Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1357 |
179.3 |
9500450 |
96.1% |
9129932 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,225,050 |
A→G |
E1215G (GAG→GGG) |
metH → |
B12‑dependent homocysteine‑N5‑methyltetrahydrofolate transmethylase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,225,050 | 0 | A | G | 99.2%
| 404.9
/ ‑4.6
| 127 | E1215G (GAG→GGG) | metH | B12‑dependent homocysteine‑N5‑methyltetrahydrofolate transmethylase |
| Reads supporting (aligned to +/- strand): ref base A (1/0); new base G (70/56); total (71/56) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.40e-01 |
Only 100 of 128 total aligned reads displayed.
CGGACAGCAAGTACTACGCTGTAGCACAAATTCAGCGCGATCAGGTTGAAGATTATGCCCGCCGTAAAGGTATGAGCGTTACCGAAGTTGAGCGCTGGCTGGCACCGAATCTGGGGTATGACGCGGACTGATTCACAAATCTGTCACTTTTCCTTACAACAAACAGGGCGCTCAATGAG > NC_000913/4224960‑4225138
|
cGGACAGCAAGTACTACGCTGTAGCACAAATTCAGCGCGATCAGGTTGAAGATTATGCCCGCCGTAAAGGTATGAGCGTTACCGAAGTTGGgc > 1:173764/1‑93 (MQ=255)
gACAGCAATTACTACGCTGTAGCAAAAATCCAGCGCGATCAGGTTGAAGATTATGCCCGCCGTAAAGGTATGAGCGTTACCGAAGTTGGgcgc < 2:1533238/93‑1 (MQ=255)
gACAGAAAGTACTCCGTTGAAGCAAAAATCCAGCGCGATAAGGTTGAAGATTATGCCCGCCGTAAAGGTATGAGCGTTACCGAAGTTGGgcgc < 1:900124/93‑1 (MQ=255)
aCAGCAAGTACTACGCTGTAGCACAAATTCAGCGCGATCAGGTTGAAGATTATGCCCGCCGTAAAGGTATGAGCGTTACCGAAGTTGGGCgct < 1:1204883/93‑1 (MQ=255)
aCAGCAAGTACTACGCTGTAGCACAAATTCAGCGCGATCAGGTTGAAGATTATGCCCGCCGTAAAGGTATGAGCGTTACCGAAGTTGGGCgct > 2:4484166/1‑93 (MQ=255)
aGCAAGTACTACGCTGTAGCACAAATTCAGCGCGATCAGGTTGAAGATTATGCCCGCCGTAAAGGTATGAGCGTTACCGAGGTTGGGCgctgg > 1:1276065/1‑93 (MQ=255)
gCAAGTACTACGCTGTAGCACAAATTCAGCGCGATCAGGTTGAAGATTATGCCCGCCGTAAAGGTATGAGCGTTACCGAAGTTGGGCgctggt > 2:1279865/1‑92 (MQ=255)
gCAAGTACTACGCTGTAGCACAAATTCAGCGCGATCAGGTTGAAGATTATGCCCGCCGTAAAGGTATGAGCGTTACCGAAGTTGGGCgctggc < 2:1588489/93‑1 (MQ=255)
aaGTACTACGCTGTAGCACAAATTCAGCGCGATCAGGTTGAAGATTATGCCCGCCGTAAAGGTATGAGCGTTACCGAAGTTGGGCgctggctg < 2:2906276/93‑1 (MQ=255)
aGTACTACGCTGTAGCACAAATTCAGCGCGATCAGGTTGAAGATTATGCCCGCCGTAAAGGTATGAGCGTTACCGAAGTTGGGCGctggctgg > 1:726793/1‑93 (MQ=255)
aGTACTACGCTGTAGCACAAATTCAGCGCGATCAGGTTGAAGATTATGCCCGCCGTAAAGGTATGAGCGTTACCGAAGTTGGGCGctggctgg > 2:3427510/1‑93 (MQ=255)
gTACTACGCTGTAGCACAAATTCAGCGCGATCAGGTTGAAGATTATGCCCGCCGTAAAGGTATGAGCGTTACCGAAGTTGGGCGCtggctggc > 2:3642999/1‑93 (MQ=255)
gTACTACGCTGTAGCACAAATTCAGCGCGATCAGGTTGAAGATTATGCCCGCCGTAAAGGTATGAGCGTTACCGAAGTTGGGCGCtggctggc > 2:3702213/1‑93 (MQ=255)
gTACTACGCTGTAGCACAAATTCAGCGCGATCAGGTTGAAGATTATGCCCGCCGTAAAGGTATGAGCGTTACCGAAGTTGGGCGCtggctggc > 1:4182653/1‑93 (MQ=255)
actacGCTGTAGCACAAATTCAGCGCGATCAGGTTGAAGATTATGCCCGCCGTAAAGGTATGAGCGTTACCGAAGTTGGGCGCTGGCTGGCAc > 1:1093238/1‑93 (MQ=255)
ctacGCTGTAGCACAAATTCAGCGCGATCAGGTTGAAGATTATGCCCGCCGTAAAGGTATGAGCGTTACCGAAGTTGGGCGCTGGCTGGCAcc < 2:1998894/93‑1 (MQ=255)
cacGCTGTAGCACAAATTCCGCGCGATCAGTTTGAAGTTTATGCCCGCCGTAAAGGTATGAGCGTTACCGAAGTTGGGCGCTGGCTGGCACCg < 1:1812085/92‑1 (MQ=255)
acGCTGTAGCACAAATTCAGCGCGATCAGGTTGAAGATTATGCCCGCCGTAAAGGTATGAGCGTTACCGAAGTTGGGCGCTGGCTGGCACCGa > 1:2297482/1‑93 (MQ=255)
cGCTGTAGCACAAATTCAGGGCGATGAGGGTGAAAGTTAGCCCCGCCGTAAAGGTATGAGCGTTACCGAAGTTGGGCGCTGGCTGGCACCGaa < 1:1893278/93‑1 (MQ=255)
cGCTGTAGCAAAAATTCGGCGCGATCGGGTTGAAGATTATGCCCGCCGTAAAGGTATGAGCGTTACCGAAGTTGGGCGCTGGCTGGCACCGaa < 1:1893279/93‑1 (MQ=255)
gCTGTAGCACAAATTCAGCGCGATCAGGTTGAAGATTATGCCCGCCGTAAAGGTATGAGCGTTACCGAAGTTGGGCGCTGGCTGGCACCGAAt > 2:2884569/1‑93 (MQ=255)
cTGTAGCACAAATTCAGCGCGATCAGGTTGAAGATTATGCCCGCCGTAAAGGTATGAGCGTTACCGAAGTTGGGCGCTGGCTGGCACCGAATc > 2:4055429/1‑93 (MQ=255)
tGTAGCACAATTTCAGCGCGATCAGGTGAAAGATTATGCCCGCCGTAAAGGTATGAGCGTTACCGAAGTTGGGCGCTTGCTGGCACCGAATCt < 2:1884753/93‑1 (MQ=255)
tGTAGCACAAATTCAGCGCGATCAGGTTGAAGATTATGCCCGCCGTAAAGGTATGAGCGTTACCGAAGTTGGGCGCTGGCTGGCACCGAATCt > 1:3851146/1‑93 (MQ=255)
tAGCACAATTTAAGCGAGATCAGTTTAAAGATTATGCCCGCCGTAAAGGTATGAGCGTTACCGAAGTTGGGCGCTGGCTGGCACCGAATCTgg < 1:2668311/93‑1 (MQ=255)
tAGCACAAATTCAGCGCGATCAGGTTGAAGATTATGCCCGCCGTAAAGGTATGAGCGTTACCGAAGTTGGGCGCTGGCTGGCACCGAATCTgg < 1:1485805/93‑1 (MQ=255)
gCACAAATTCAGCGCGATCAGGTTGAAGATTATGCCCGCCGTAAAGGTATGAGCGTTACCGAAGTTGGGCGCTGGCTGGCACCGAATCTgggg > 2:1036797/1‑93 (MQ=255)
ccacaAATTCGGCGCGATCAGTTTGAAGTTTATCCCCGCCGTAAAGGTATGAGCGTTACCGAAGTTGGGCGCTGGCTGGCACCGAATCTgggg < 1:2235769/92‑1 (MQ=255)
cacaAATTCAGCGCGATCAGGTTGAAGATTATGCCCGCCGTAAAGGGATGAGCGTTACCGAAGTTGGGCGCTGGCTGGCACCGAATCTGGGGt > 2:2233497/1‑93 (MQ=255)
caAATTCAGCGCGATCAGGTTGAAGATTATGCCCGCCGTAAAGGTATGAGCGTTACCGAAGTTGGGCGCTGGCTGGCACCGAATCTGGGGTAt > 2:1118941/1‑93 (MQ=255)
acaaTGCAGCGCTATGAGGTTGAACATTAGGCCCGCCGTAAAGGTATGAGCGTTACCGAAGTTGGGCGCTGGCTGGCACCGAATCTGGGGTAt < 1:2580900/91‑1 (MQ=255)
aaaTTCAGCGCGATCAGGTTGAAGATTATGCCCGCCGTAAAGGTATGAGCGTTACCGAAGTTGGGCGCTGGCTGGCACCGAATCTGGGGTATg > 2:3659385/1‑93 (MQ=255)
aaaTTCAGCGCGATCAGGTTGAAGATTATGCCCGCCGTAAAGGTATGAGCGTTACCGAAGTTGGGCGCTGGCTGGCACCGAATCTGGGGTATg > 2:43858/1‑93 (MQ=255)
aaTTCAGCGCGATCAGGTTGAAGATTATGCCCGCCGTAAAGGTATGAGCGTTACCGAAGTTGGGCGCTGGCTGGCACCGAATCTGGGGTATGa > 1:2398501/1‑93 (MQ=255)
aaTTCAGCGCGATCAGGTTGAAGATTATGCCCGCCGTAAAGGTATGAGCGTTACCGAAGTTGGGCGCTGGCTGGCACCGAATCTGGGGTATGa > 2:628003/1‑93 (MQ=255)
aTTCAGCGCGATCAGGTTGAAGATTATGCCCGCCGTAAAGGTATGAGCGTTACCGAAGTTGGGCGCTGGCTGGCACCGAATCTGGGGTATGag > 2:4491045/1‑92 (MQ=255)
tCAGCGCGATCAGGTTGAAGATTATGCCCGCCGTAAAGGTATGAGCGTTACCGAAGTTGGGCGCTGGCTGGCACCGGATCTGGGGTATGAcgg > 2:2704560/1‑92 (MQ=255)
tCAGCGCGATCAGGTTGAAGATTATGCCCGCCGTAAAGGTATGAGCGTTACCGAAGTTGGGCGCTGGCTGGCACCGAATCTGGGGTATGAcgc < 1:3668157/93‑1 (MQ=255)
tCAGCGCGATCAGGTTGAAGATTATGCCCGCCGTAAAGGTATGAGCGTTACCGAAGTTGGGCGCTGGCTGGCACCGAATCTGGGGTATGAcgc > 1:2075594/1‑93 (MQ=255)
cAGCGCGATCAGGTTGAAGATTATGCCCGCCGTAAAGGTATGAGCGTTACCGAAGTTGGGCGCTGGCTGGCACCGAATCTGGGGTATGAcgcg > 1:2887748/1‑93 (MQ=255)
gcgcGATCAGGTTGAAGATTATGCCCGCCGTAAAGGTATGAGCGTTACCGAAGTTGGGCGCTGGCTGGCACCGAATCTGGGGTATGACGCGGa > 2:4412945/1‑93 (MQ=255)
gcgcGATCAGGTTGAAGATTATGCCCGCCGTAAAGGTATGAGCGTTACCGAAGTTGGGCGCTGGCTGGCACCGAATCTGGGGTATGACGCGGa > 1:1635177/1‑93 (MQ=255)
ggcgATCAGGTTGAAGATTATGCCCGCCGTAAAGGTATGAGCGTTACCGAAGTTGGGCGCTGGCTGGCACCGAATCTGGGGTATGACGCGGAc < 1:4408131/92‑1 (MQ=255)
gcgATCAGGTTGAAGATTATGCCCGCCGTAAAGGTATGAGCGTTACCGAAGTTGGGCGCTGGCTGGCACCGAATCTGGGGTATGACGCGGACt > 1:3165791/1‑93 (MQ=255)
gcgATCAGGTTGAAGATTATGCCCGCCGTAAAGGTATGAGCGTTACCGAAGTTGGGCGCTGGCTGGCACCGAATCTGGGGTATGACGCGGACt > 1:3165790/1‑93 (MQ=255)
cgATCAGGTTGAAGATTATGCCCGCCGTAAAGGTATGAGCGTTACCGAAGTTGGGCGCTGGCTGGCACCGAATCTGGGGTATGACGCGGACTg > 1:4519443/1‑93 (MQ=255)
gATCAGGTTGAAGATTATGCCCGCCGTAAAGGTATGAGCGTTACCGAAGTTGGGCGCTGGCTGGCACCGAATCTGGGGTATGACGCGGACTGa > 1:1675493/1‑93 (MQ=255)
gATCAGGTTGAAGATTATGCCCGCCGTAAAGGTATGAGCGTTACCGAAGTTGGGCGCTGGCTGGCACCGAATCTGGGGTATGACGCGGACTGa > 1:2224376/1‑93 (MQ=255)
gATCAGGTTGAAGATTATGCCCGCCGTAAAGGTATGAGCGTTACCGAAGTTGGGCGCTGGCTGGCACCGAATCTGGGGTATGACGCGGACTGa > 1:535364/1‑93 (MQ=255)
gccAGGTTGAAGATGAGCCCCGCCGTAAAGGTATGAGCGTTACCGAAGTTGGGCGCTGGCTGGCACCGAATCTGGGGTATGACGCGGACTGAt < 2:1874184/91‑1 (MQ=255)
aTCAGGTTGAAGATTATGCCCGCCGTAAAGGTATGAGCGTTACCGAAGTTGGGCGCTGGCTGGCACCGAATCTGGGGTATGACGCGGACTGAt < 1:4237229/93‑1 (MQ=255)
aTCAGGTTGAAGATTATGCCCGCCGTAAAGGTATGAGCGTTACCGAAGTTGGGCGCTGGCTGGCACCGAATCTGGGGTATGACGCGGACTGAt > 1:4579741/1‑93 (MQ=255)
aTCAGGTTGAAGATTATGCCCGCCGTAAAGGTATGAGCGTTACCGAAGTTGGGCGCTGGCTGGCACCGAATCTGGGGTATGACGCGGACTGAt > 1:481441/1‑93 (MQ=255)
atggTTGAAAATTGTCGCCGCCGTAAAGGTATGTGCGTTACCGAAGTTGGGCGCTGGCTGGCACCGAATCTGGGGTATGACGCGGACTGATTc < 1:4571703/91‑1 (MQ=255)
aGGTTGAAGATTATGCCCGCCGTAAAGGTATGAGCGTTACCGAAGTTGGGCGCTGGCTGGCACCGAATCTGGGGTATGACGCGGACTGATTca > 2:2162695/1‑93 (MQ=255)
aGGTTGAAGATTATGCCCGCCGTAAAGGTATGAGCGTTACCGAAGTTGGGCGCTGGCTGGCACCGAATCTGGGGTATGACGCGGACTGATTca > 1:1594584/1‑93 (MQ=255)
tGAAGATTATGCCCGCCGTAAAGGTATGAGCGTTACCGAAGTTGGGCGCTGGCTGGCACCGAATCTGGGGTATGACGCGGACTGATTCACaaa > 1:3691687/1‑93 (MQ=255)
aaGATTATGCCCGCCGTAAAGGTATGAGCGTTACCGAAGTTGGGCGCTGGCTGGAACCGAATCTGGGGTATGACGCGGACTGATTCACAAATc > 2:4228758/1‑93 (MQ=255)
aGATTATGCCCGCCGTAAAGGTATGAGCGTTACCGAAGTTGGGCGCTGGCTGGCACCGAATCTGGGGTATGACGCGGACTGATTCACAAATCt > 2:1310786/1‑93 (MQ=255)
ttATGCCCGCCGTAAAGGTATGAGCGTTACCGAAGTTGGGCGCTGGCTGGCACCGAATCTGGGGTATGACGCGGACTGATTCACAAATCTGTc > 1:4319014/1‑93 (MQ=255)
ttATGCCCGCCGTAAAGGTATGAGCGTTACCGAAGTTGGGCGCTGGCTGGCACCGAATCTGGGGTATGACGCGGACTGATTCACAAATCTGTc > 2:1512010/1‑93 (MQ=255)
tgccccGCCGTAAAGGTATGAGCGTTACCGAAGTTGGGCGCTGGCTGGCACCGAATCTGGGGTATGACGCGGACTGATTCACAAATCTGTCAc < 1:1167720/90‑1 (MQ=255)
tGCCCGCCGTAAAGGTATGAGCGTTACCGAAGTTGGGCGCTGGCTGGCACCGAATCTGGGGTATGACGCGGACTGATTCACAAATCTGTCACt > 1:4707766/1‑93 (MQ=255)
gCCCGCCGTAAAGGTATGAGCGTTACCGAAGTTGGGCGCTGGCTGGCACCGAATCTGGGGGATGACGCGGACTGATTCACAAATCTGTCACtt > 1:392527/1‑93 (MQ=255)
ccgccgTAAAGGTATGAGCGTTACCGAAGTTGGGCGCTGGCTGGCACCGAATCTGGGGTATGACGCGGACTGATTCACAAATCTGTCACtttt < 2:2013930/93‑1 (MQ=255)
ccgccgTAAAGGTATGAGCGTTACCGAAGTTGGGCGCTGGCTGGCACCGAATCTGGGGTATGACGCGGACTGATTCACAAATCTGTCACtttt > 1:1902397/1‑93 (MQ=255)
ccgccgTAAAGGTATGAGCGTTACCGAAGTTGGGCGCTGGCTGGCACCGAATCTGGGGTATGACGCGGACTGATTCACAAATCTGTCACtttt > 2:2662231/1‑93 (MQ=255)
ccgccgTAAAGGTATGAGCGTTACCGAAGTTGAGCGCTGGCTGGCACCGAATCTGGGGTATGACGCGGACTGATTCACAAATCTGTCACtttt > 1:4703306/1‑93 (MQ=255)
cgccgTAAAGGTATGAGCGTTACCGAAGTTGGGCGCTGGCTGGCACCGAATCTGGGGTATGACGCGGACTGATTCACAAATCTGTCACTTTTc < 2:3340603/93‑1 (MQ=255)
ccgTAAAGGTATGAGCGTTACCGAAGTTGGGCGCTGGCTGGCACCGAATCTGGGGTATGACGCGGACTGATTCACAAATCTGTCACTTTTCCt < 1:4009806/93‑1 (MQ=255)
ccgTAAAGGTATGAGCGTTACCGAAGTTGGGCGCTGGCTGGCACCGAATCTGGGGTATGACGCGGACTGATTCACAAATCTGTCACTTTTCCt < 1:3667571/93‑1 (MQ=255)
cgTAAAGGTATGAGCGTTACCGAAGTTGGGCGCTGGCTGGCACCGAATCTGGGGTATGACGCGGACTGATTCACAAATCTGTCACTTTTCCtt < 2:829322/93‑1 (MQ=255)
cgTAAAGGTATGAGCGTTACCGAAGTTGGGCGCTGGCTGGCACCGAATCTGGGGTATGACGCGGACTGATTCACAAATCTGTCACTTTTCCtt > 1:1757700/1‑93 (MQ=255)
gTAAAGGTATGAGCGTTACCGAAGTTGGGCGCTGGCTGGCACCGAATCTGGGGTATGACGCGGACTGATTCACAAATCTGTCACTTTTCCTTa < 1:602848/93‑1 (MQ=255)
tAAAGGTATGAGCGTTACCGAAGTTGGGCGCTGGCTGGCACCGAATCTGGGGTATGACGCGGACTGATTCACAAATCTGTCACTTTTCCTTac > 1:3083387/1‑93 (MQ=255)
aaaGGTATGAGCGTTACCGAAGTTGGGCGCTGGCTGGCACCGAATCTGGGGTATGACGCGGACTGATTCACAAATCTGTCACTTTTCCTTaca < 1:2446862/93‑1 (MQ=255)
aGGTATGAGCGTTGCCGAAGTTGGGCGCTGGCTGGCACCGAATCTGGGGTATGACGCGGACTGATTCACAAATCTGTCACTTTTCCTTacaac < 1:2968687/93‑1 (MQ=255)
aGGTATGAGCGTTACCGAAGTTGGGCGCTGGCTGGCACCGAATCTGGGGTATGACGCGGACTGATTCATAAATCTGTCACTTTTCCTTacaac < 2:4593545/93‑1 (MQ=255)
aGGTATGAGCGTTACCGAAGTTGGGCGCTGGCTGGCACCGAATCTGGGGTATGACGCGGACTGATTCACAAATCTGTCACTTTTCCTTacaac < 2:4287562/93‑1 (MQ=255)
ggTATGAGCGTTACCGAAGTTGGGCGCTGGCTGGCACCGAATCTGGGGTATGACGCGGACTGATTCACAAATCTGTCACTTTTCCTTacaaca > 1:2314410/1‑93 (MQ=255)
gTATGAGCGTTACCGAAGTTGGGCGCTGGCTGGCACCGAATCTGGGGTATGACGCGGACTGATTCACAAATCTGTCACTTTTCCTTAcaacaa < 1:3942729/93‑1 (MQ=255)
aTGAGCGTTACCGAAGTTGGGCGCTGGCTGGCACCGAATCTGGGGTATGACGCGGACTGATTCACAAATCTGTCACTTTTCCTTACaacaaac < 1:461062/93‑1 (MQ=255)
tGAGCGTTACCGAAGTTGGGCGCTGGCTGGCACCGAATCTGGGGTATGACGCGGACTGATTCACAAATCTGTCACTTTTCCTTACaacaaaca < 1:254960/93‑1 (MQ=255)
gAGCGTTACCGAAGTTGGGCGCTGGCTGGCACCGAATCTGGGGTATGACGCGGACTGATTCACAAATCTGTCACTTTTCCTTACAACAAACAg < 1:2971321/93‑1 (MQ=255)
gAGCGTTACCGAAGTTGGGCGCTGGCTGGCACCGAATCTGGGGTATGACGCGGACTGATTCACAAATCTGTCACTTTTCCTTACAACAAACAg < 1:990640/93‑1 (MQ=255)
gAGCGTTACCGAAGTTGGGCGCTGGCTGGCACCGAATCTGGGGTATGACGCGGACTGATTCACAAATCTGTCACTTTTCCTTACAACAAACAg < 2:1459624/93‑1 (MQ=255)
aGCGTTACCGAAGTTGGGCGCTGGCTGGCACCGAATCTGGGGTATGACGCGGACTGATTCACAAATCTGTCACTTTTCCTTACAACAAACAgg < 2:2384560/93‑1 (MQ=255)
aGCGTTACCGAAGTTGGGCGCTGGCTGGCACCGAATCTGGGGTATGACGCGGACTGATTCACAAATCTGTCACTTTTCCTTACAACAAACAgg < 2:4372561/93‑1 (MQ=255)
cGTTACCGAAGTTGGGCGCTGGCTGGCACCGAATCTGGGGTATGACGCGGACTGATTCACAAATCTGTCACTTTTCCTTACAACAAACAGGgc > 2:1290287/1‑93 (MQ=255)
gTTACCGAAGTTGGGCGCTGGCTGGCACCGAATCTGGGGTATGACGCGGACTGATTCACAAATCTGTCACTTTTCCTTACAACAAACAGGgcg > 1:2931242/1‑93 (MQ=255)
gTTACCGAAGTTGGGCGCTGGCTGGCACCGAATCTGGGGTATGACGCGGACTGATTCACAAATCTGTCACTTTTCCTTACAACAAACAGGgcg > 2:4633291/1‑93 (MQ=255)
gTTACCGAAGTTGGGCGCTGGCTGGCACCGAATCTGGGGTATGACGCGGACTGATTCACAAATCTGTCACTTTTCCTTACAACAAACAGGgcg > 1:1602137/1‑93 (MQ=255)
ttACCGAAGTTGGGCGCTGGCTGGCACCGAATCTGGGGTATGACGCGGACTGATTCACAAATCTGTCACTTTTCCTTACAACAAACAGGgcgc < 2:616394/93‑1 (MQ=255)
tACCGAAGTTGGGCGCTGGCTGGCACCGAATCTGGGGTATGACGCGGACTGATTCACAAATCTGTCACTTTTCCTTACAACAAACAGGGCGCt < 2:3761086/93‑1 (MQ=255)
gccGAAGTTGGGCGCTGGCTGGCACCGAATCTGGGGTATGACGCGGACTGATTCACAAATCTGTCACTTTTCCTTACAACAAACAGGGCGCTc < 2:1110149/92‑1 (MQ=255)
aCCGAAGTTGGGCGCTGGCTGGCACCGAATCTGGGGTATGACGCGGACTGATTCACAAATCTGTCACTTTTCCTTACAACAAACAGGGCGCTc < 2:3859691/93‑1 (MQ=255)
cGAAGTTGGGCGCTGGCTGGCACCGAATCTGGGGTATGACGCGGACTGATTCACAAATCTGTCACTTTTCCTTACAACAAACAGGGCGCTCaa < 1:342606/93‑1 (MQ=255)
gAAGTTGGGCGCTGGCTGGCACCGAATCTGGGGTATGACGCGGACTGATTCACAAATCTGTCACTTTTCCTTACAACAAACAGGGCGCTCAAt > 1:4431909/1‑93 (MQ=255)
aGTTGGGCGCTGGCTGGCACCGAATCTGGGGTATGACGCGGACTGATTCACAAATCTGTCACTTTTCCTTACAACAAACAGGGCGCTCAATGa > 2:3895762/1‑93 (MQ=255)
gTTGGGCGCTGGCTGGCACCGAATCTGGGGTATGACGCGGACTGATTCACAAATCTGTCACTTTTCCTTACAACAAACAGGGCGCTCAATGAg < 1:4246845/93‑1 (MQ=255)
|
CGGACAGCAAGTACTACGCTGTAGCACAAATTCAGCGCGATCAGGTTGAAGATTATGCCCGCCGTAAAGGTATGAGCGTTACCGAAGTTGAGCGCTGGCTGGCACCGAATCTGGGGTATGACGCGGACTGATTCACAAATCTGTCACTTTTCCTTACAACAAACAGGGCGCTCAATGAG > NC_000913/4224960‑4225138
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
ACCCGGACAGCAAGTACTACGCTGTAGCACAAATTCAGCGCGATCAGGTTGAAGATTATGCCCGCCGTAAAGGTATGAGCGTTACCGAAGTTGAGCGCTGGCTGGCACCGAATCTGGGGTATGACGCGGACTGATTCACAAATCTGTCACTTTTCCTTACAACAAACAGGGCGCTCAATGAGTGC > NC_000913/4224957‑4225141
|
ACCCGGACAGCAAGTACTACGCTGTAGCACAAATTCAGCGCGATCAGGTTGAAGATTATGCCCGCCGTAAAGGTATGAGCGTTACCGAAGTTGG > SRR4302544.4718137/1‑94 (MQ=60)
ccgggacagaaggtactaccttgaAGCACAATTTCAGCGCGATTAGGTTGAAGATTAGGCCCGCCGTAAAGGTATGAGCGTTACCGAAGTTGGG < SRR4302544.3504661/70‑1 (MQ=60)
CCCGGACAGAAAGTACTACGCTTTAGCACAAATTCAGCGCGATCAGGTGAAAGATTATCCCCGCCGTAAAGGTATGAGCGTTACCGAAGTTGGG < SRR4302544.1225287/94‑1 (MQ=60)
CCGGACAGCAAGTACTACGCTGTAGCACAAATTCAGCGCGATCAGGTTGAAGATTATGCCCGCCGTAAAGGTATGAGCGTTACCGAAGTTGGGC > SRR4302544.175478/1‑94 (MQ=60)
GGACAGCAAGTACTACGCTGTAGCACAAATTCAGCGCGATCAGGTTGAAGATTATGCCCGCCGTAAAGGTATGAGCGTTACCGAAGTTGGGCGC > SRR4302544.2265498/1‑94 (MQ=60)
GACAGAAAGTACTCCGTTGAAGCAAAAATCCAGCGCGATAAGGTTGAAGATTATGCCCGCCGTAAAGGTATGAGCGTTACCGAAGTTGGGCGCT < SRR4302544.909029/94‑1 (MQ=60)
ACAGCAAGTACTACGCTGTAGCACAAATTCAGCGCGATCAGGTTGAAGATTATGCCCGCCGTAAAGGTATGAGCGTTACCGAAGTTGGGCGCTG < SRR4302544.1216820/94‑1 (MQ=60)
CAGCAAGTACTACGCTGTAGCACAAATTCAGCGCGATCAGGTTGAAGATTATGCCCGCCGTAAAGGTATGAGCGTTACCGAGGTTGGGCGCTGG > SRR4302544.1288629/1‑94 (MQ=60)
CAAGTACTACGCTGTAGCACAAATTCAGCGCGATCAGGTTGAAGATTATGCCCGCCGTAAAGGTATGAGCGTTACCGAAGTTGGGCGCTGGCTG > SRR4302544.3738868/1‑94 (MQ=60)
AAGTACTACGCTGTAGCACAAATTCAGCGCGATCAGGTTGAAGATTATGCCCGCCGTAAAGGTATGAGCGTTACCGAAGTTGGGCGCTGGCTGG > SRR4302544.733925/1‑94 (MQ=60)
AGTACTACGCTGTAGCACAAATTCAGCGCGATCAGGTTGAAGATTATGCCCGCCGTAAAGGTATGAGCGTTACCGAAGTTGGGCGCTGGCTGGC > SRR4302544.4224075/1‑94 (MQ=60)
TACTACGCTGTAGCACAAATTCAGCGCGATCAGGTTGAAGATTATGCCCGCCGTAAAGGTATGAGCGTTACCGAAGTTGGGCGCTGGCTGGCAC > SRR4302544.1104115/1‑94 (MQ=60)
TACGCTGTAGCACAAATTCAGCGCGATCAGGTTGAAGATTATGCCCGCCGTAAAGGTATGAGCGTTACCGAAGTTGGGCGCTGGCTGGCACCGA > SRR4302544.2319158/1‑94 (MQ=60)
CACGCTGTAGCACAAATTCCGCGCGATCAGTTTGAAGTTTATGCCCGCCGTAAAGGTATGAGCGTTACCGAAGTTGGGCGCTGGCTGGCACCGA < SRR4302544.1829779/94‑1 (MQ=60)
CGCTGTAGCACAAATTCAGGGCGATGAGGGTGAAAGTTAGCCCCGCCGTAAAGGTATGAGCGTTACCGAAGTTGGGCGCTGGCTGGCACCGAAT < SRR4302544.1911571/94‑1 (MQ=60)
CGCTGTAGCAAAAATTCGGCGCGATCGGGTTGAAGATTATGCCCGCCGTAAAGGTATGAGCGTTACCGAAGTTGGGCGCTGGCTGGCACCGAAT < SRR4302544.1911572/94‑1 (MQ=60)
CTGTAGCACAAATTCAGCGCGATCAGGTTGAAGATTATGCCCGCCGTAAAGGTATGAGCGTTACCGAAGTTGGGCGCTGGCTGGCACCGAATCT > SRR4302544.3889373/1‑94 (MQ=60)
TAGCACAATTTAAGCGAGATCAGTTTAAAGATTATGCCCGCCGTAAAGGTATGAGCGTTACCGAAGTTGGGCGCTGGCTGGCACCGAATCTGGG < SRR4302544.2693889/94‑1 (MQ=60)
TAGCACAAATTCAGCGCGATCAGGTTGAAGATTATGCCCGCCGTAAAGGTATGAGCGTTACCGAAGTTGGGCGCTGGCTGGCACCGAATCTGGG < SRR4302544.1500485/94‑1 (MQ=60)
CCACAAATTCGGCGCGATCAGTTTGAAGTTTATCCCCGCCGTAAAGGTATGAGCGTTACCGAAGTTGGGCGCTGGCTGGCACCGAATCTGGGGT < SRR4302544.2256794/94‑1 (MQ=60)
acaatgcagcgctatgAGGTTGAACATTAGGCCCGCCGTAAAGGTATGAGCGTTACCGAAGTTGGGCGCTGGCTGGCACCGAATCTGGGGTATG < SRR4302544.2605704/78‑1 (MQ=60)
CAAATTCAGCGCGATCAGGTTGAAGATTATGCCCGCCGTAAAGGTATGAGCGTTACCGAAGTTGGGCGCTGGCTGGCACCGAATCTGGGGTATG > SRR4302544.4323748/1‑94 (MQ=60)
AAATTCAGCGCGATCAGGTTGAAGATTATGCCCGCCGTAAAGGTATGAGCGTTACCGAAGTTGGGCGCTGGCTGGCACCGAATCTGGGGTATGA > SRR4302544.2421249/1‑94 (MQ=60)
aatccggcgcaaccagtgtgaagatttcGCCCGCCGTAAAGGTATGAGCGTTACCGAAGTTGGGCGCTGGCTGGCACCGAATCTGGGGTATGAC < SRR4302544.4187534/66‑1 (MQ=60)
TTCAGCGCGATCAGGTTGAAGATTATGCCCGCCGTAAAGGTATGAGCGTTACCGAAGTTGGGCGCTGGCTGGCACCGAATCTGGGGTATGACGC > SRR4302544.2095540/1‑94 (MQ=60)
TCAGCGCGATCAGGTTGAAGATTATGCCCGCCGTAAAGGTATGAGCGTTACCGAAGTTGGGCGCTGGCTGGCACCGAATCTGGGGTATGACGCG > SRR4302544.2915591/1‑94 (MQ=60)
TCAGCGCGATCAGGTTGAAGATTATGCCCGCCGTAAAGGTATGAGCGTTACCGAAGTTGGGCGCTGGCTGGCACCGAATCTGGGGTATGACGCG < SRR4302544.3704736/94‑1 (MQ=60)
AGCGCGATCAGGTTGAAGATTATGCCCGCCGTAAAGGTATGAGCGTTACCGAAGTTGGGCGCTGGCTGGCACCGAATCTGGGGTATGACGCGGA > SRR4302544.1651273/1‑94 (MQ=60)
GGCGATCAGGTTGAAGATTATGCCCGCCGTAAAGGTATGAGCGTTACCGAAGTTGGGCGCTGGCTGGCACCGAATCTGGGGTATGACGCGGACT < SRR4302544.4452650/94‑1 (MQ=60)
GGCGATCAGGTGGAAGATTATGCCCGCCGTAAAGGTATGAGCGTTACCGAAGTTGGGCGCTGGCTTGCACCGAATCTGGGGTATGACGCGGACT < SRR4302544.1373836/94‑1 (MQ=60)
CGCGATCAGGTTGAAGATTATGCCCGCCGTAAAGGTATGAGCGTTACCGAAGTTGGGCGCTGGCTGGCACCGAATCTGGGGTATGACGCGGACT > SRR4302544.3195914/1‑94 (MQ=60)
CGCGATCAGGTTGAAGATTATGCCCGCCGTAAAGGTATGAGCGTTACCGAAGTTGGGCGCTGGCTGGCACCGAATCTGGGGTATGACGCGGACT > SRR4302544.3195913/1‑94 (MQ=60)
gcaaagagaTTGAAGTTTATGCCCGCCGTAAAGGTATGAGCGTTACCGAAGTTGGGCGCTGGCTGGCACCGAATCTGGGGTATGACGCGGACTG < SRR4302544.4502543/85‑1 (MQ=60)
GCGATCAGGTTGAAGATTATGCCCGCCGTAAAGGTATGAGCGTTACCGAAGTTGGGCGCTGGCTGGCACCGAATCTGGGGTATGACGCGGACTG > SRR4302544.4564697/1‑94 (MQ=60)
CGATCAGGTTGAAGATTATGCCCGCCGTAAAGGTATGAGCGTTACCGAAGTTGGGCGCTGGCTGGCACCGAATCTGGGGTATGACGCGGACTGA > SRR4302544.2245303/1‑94 (MQ=60)
CGATCAGGTTGAAGATTATGCCCGCCGTAAAGGTATGAGCGTTACCGAAGTTGGGCGCTGGCTGGCACCGAATCTGGGGTATGACGCGGACTGA > SRR4302544.1691994/1‑94 (MQ=60)
CGATCAGGTTGAAGATTATGCCCGCCGTAAAGGTATGAGCGTTACCGAAGTTGGGCGCTGGCTGGCACCGAATCTGGGGTATGACGCGGACTGA > SRR4302544.540660/1‑94 (MQ=60)
GATCAGGTTGAAGATTATGCCCGCCGTAAAGGTATGAGCGTTACCGAAGTTGGGCGCTGGCTGGCACCGAATCTGGGGTATGACGCGGACTGAT > SRR4302544.4625355/1‑94 (MQ=60)
GATCAGGTTGAAGATTATGCCCGCCGTAAAGGTATGAGCGTTACCGAAGTTGGGCGCTGGCTGGCACCGAATCTGGGGTATGACGCGGACTGAT > SRR4302544.486152/1‑94 (MQ=60)
ATCAGGTTGAAGATTATGCCCGCCGTAAAGGTATGAGCGTTACCGAAGTTGGGCGCTGGCTGGCACCGAATCTGGGGTATGACGCGGACTGATT < SRR4302544.4280416/94‑1 (MQ=60)
atggttgaaaattgtcgCCGCCGTAAAGGTATGTGCGTTACCGAAGTTGGGCGCTGGCTGGCACCGAATCTGGGGTATGACGCGGACTGATTCA < SRR4302544.4617267/77‑1 (MQ=60)
CAGGTTGAAGATTATGCCCGCCGTAAAGGTATGAGCGTTACCGAAGTTGGGCGCTGGCTGGCACCGAATCTGGGGTATGACGCGGACTGATTCA > SRR4302544.1610287/1‑94 (MQ=60)
AGGTTGAAGATTATGCCCGCCGTAAAGGTATGAGCGTTACCGAAGTTGGGCGCTGGCTGGCACCGAATCTGGGGTATGACGCGGACTGATTCAC > SRR4302544.3102109/1‑94 (MQ=60)
TTGAAGATTATGCCCGCCGTAAAGGTATGAGCGTTACCGAAGTTGGGCGCTGGCTGGCACCGAATCTGGGGTATGACGCGGACTGATTCACAAA > SRR4302544.3728472/1‑94 (MQ=60)
TGAAGATTATGCCCGCCGTAAAGGTATGAGCGTTACCGAAGTTGGGCGCTGGCTGGCACCGAATCTGGGGTATGACGCGGACTGATTCACAAAT > SRR4302544.4206234/1‑94 (MQ=60)
ATTATGCCCGCCGTAAAGGTATGAGCGTTACCGAAGTTGGGCGCTGGCTGGCACCGAATCTGGGGTATGACGCGGACTGATTCACAAATCTGTC > SRR4302544.4363012/1‑94 (MQ=60)
ATTATGCCCGCCGTAAAGGTATGAGCGTTACCGAAGTTGGGCGCTGGCTGGCACCGAATCTGGGGTATGACGCGGACTGATTCACAAATCTGTC > SRR4302544.3674203/1‑94 (MQ=60)
tgcCCCGCCGTAAAGGTATGAGCGTTACCGAAGTTGGGCGCTGGCTGGCACCGAATCTGGGGTATGACGCGGACTGATTCACAAATCTGTCACT < SRR4302544.1179364/91‑1 (MQ=60)
ATGCCCGCCGTAAAGGTATGAGCGTTACCGAAGTTGGGCGCTGGCTGGCACCGAATCTGGGGTATGACGCGGACTGATTCACAAATCTGTCACT > SRR4302544.4754282/1‑94 (MQ=60)
ATGCCCGCCGTAAAGGTATGAGCGTTACCGAAGTTGGGCGCTGGCTGGCACCGAATCTGGGGTATGACGCGGACTGATTCACAAATCTGTCACT > SRR4302544.1777946/1‑94 (MQ=60)
TGCCCGCCGTAAAGGTATGAGCGTTACCGAAGTTGGGCGCTGGCTGGCACCGAATCTGGGGGATGACGCGGACTGATTCACAAATCTGTCACTT > SRR4302544.396507/1‑94 (MQ=60)
CCCGCCGTAAAGGTATGAGCGTTACCGAAGTTGGGCGCTGGCTGGCACCGAATCTGGGGTATGACGCGGACTGATTCACAAATCTGTCACTTTT > SRR4302544.1920779/1‑94 (MQ=60)
CCCGCCGTAAAGGTATGAGCGTTACCGAAGTTGAGCGCTGGCTGGCACCGAATCTGGGGTATGACGCGGACTGATTCACAAATCTGTCACTTTT > SRR4302544.4749792/1‑94 (MQ=60)
CCGTAAAGGTATGAGCGTTACCGAAGTTGGGCGCTGGCTGGCACCGAATCTGGGGTATGACGCGGACTGATTCACAAATCTGTCACTTTTCCTT > SRR4302544.1774902/1‑94 (MQ=60)
CCGTAAAGGTATGAGCGTTACCGAAGTTGGGCGCTGGCTGGCACCGAATCTGGGGTATGACGCGGACTGATTCACAAATCTGTCACTTTTCCTT < SRR4302544.4049695/94‑1 (MQ=60)
CCGTAAAGGTATGAGCGTTACCGAAGTTGGGCGCTGGCTGGCACCGAATCTGGGGTATGACGCGGACTGATTCACAAATCTGTCACTTTTCCTT < SRR4302544.3704145/94‑1 (MQ=60)
GTAAAGGTATGAGCGTTACCGAAGTTGGGCGCTGGCTGGCACCGAATCTGGGGTATGACGCGGACTGATTCACAAATCTGTCACTTTTCCTTAC < SRR4302544.608761/94‑1 (MQ=60)
GTAAAGGTATGAGCGTTACCGAAGTTGGGCGCTGGCTGGCACCGAATCTGGGGTATGACGCGGACTGATTCACAAATCTGTCACTTTTCCTTAC > SRR4302544.3112760/1‑94 (MQ=60)
TAAAGGTATGAGCGTTACCGAAGTTGGGCGCTGGCTGGCACCGAATCTGGGGTATGACGCGGACTGATTCACAAATCTGTCACTTTTCCCTACA > SRR4302544.2046251/1‑94 (MQ=60)
AAAGGTATGAGCGTTACCGAAGTTGGGCGCTGGCTGGCACCGAATCTGGGGTATGACGCGGACTGATTCACAAATCTGTCACTTTTCCTTACAA < SRR4302544.2470190/94‑1 (MQ=60)
AGGTATGAGCGTTGCCGAAGTTGGGCGCTGGCTGGCACCGAATCTGGGGTATGACGCGGACTGATTCACAAATCTGTCACTTTTCCTTACAACA < SRR4302544.2997158/94‑1 (MQ=60)
AGGTATGAGCGTTACCGAAGTTGGGCGCTGGCTGGCACCGAATCTGGGGTATGACGCGGACTGATTCACAAATCTGTCACTTTTCCTTACAACA > SRR4302544.2336310/1‑94 (MQ=60)
AGGTATGAGCGTTACCGAAGTTGGGCGCTGGCTGGCACCGAATCTGGGGTATGACGCGGACTGATTCACAAATCTGTCACTTTTCCTTACAACA < SRR4302544.2738841/94‑1 (MQ=60)
GTATGAGCGTTACCGAAGTTGGGCGCTGGCTGGCACCGAATCTGGGGTATGACGCGGACTGATTCACAAATCTGTCACTTTTCCTTACAACAAA < SRR4302544.3981902/94‑1 (MQ=60)
ATGAGCGTTACCGAAGTTGGGCGCTGGCTGGCACCGAATCTGGGGTATGACGCGGACTGATTCACAAATCTGTCACTTTTCCTTACAACAAACA < SRR4302544.465594/94‑1 (MQ=60)
TGAGCGTTACCGAAGTTGGGCGCTGGCTGGCACCGAATCTGGGGTATGACGCGGACTGATTCACAAATCTGTCACTTTTCCTTACAACAAACAG < SRR4302544.257664/94‑1 (MQ=60)
TGAGCGTTACCGAAGTTGGCCGCTGGCTGGCACCGAATCTGGGGTATGACGCGGACTGATTCACAAATCTGTCACTTTTCCTTACAACAAACAG < SRR4302544.4662253/94‑1 (MQ=60)
GAGCGTTACCGAAGTTGGGCGCTGGCTGGCACCGAATCTGGGGTATGACGCGGACTGATTCACAAATCTGTCACTTTTCCTTACAACAAACAGG < SRR4302544.1688616/94‑1 (MQ=60)
GAGCGTTACCGAAGTTGGGCGCTGGCTGGCACCGAATCTGGGGTATGACGCGGACTGATTCACAAATCTGTCACTTTTCCTTACAACAAACAGG > SRR4302544.4586456/1‑94 (MQ=60)
GAGCGTTACCGAAGTTGGGCGCTGGCTGGCACCGAATCTGGGGTATGACGCGGACTGATTCACAAATCTGTCACTTTTCCTTACAACAAACAGG < SRR4302544.1000394/94‑1 (MQ=60)
GAGCGTTACCGAAGTTGGGCGCTGGCTGGCACCGAATCTGGGGTATGACGCGGACTGATTCACAAATCTGTCACTTTTCCTTACAACAAACAGG < SRR4302544.2999807/94‑1 (MQ=60)
CGTTACCGAAGTTGGGCGCTGGCTGGCACCGAATCTGGGGTATGACGCGGACTGATTCACAAATCTGTCACTTTTCCTTACAACAAACAGGGCG > SRR4302544.2959410/1‑94 (MQ=60)
CGTTACCGAAGTTGGGCGCTGGCTGGCACCGAATCTGGGGTATGACGCGGACTGATTCACAAATCTGTCACTTTTCCTTACAACAAACAGGGCG > SRR4302544.1617934/1‑94 (MQ=60)
CGAAGTTGGGCGCTGGCTGGCACCGAATCTGGGGTATGACGCGGACTGATTCACAAATCTGTCACTTTTCCTTACAACAAACAGGGCGCTCAAT < SRR4302544.346146/94‑1 (MQ=60)
CGAAGTTGGGCGCTGGCTGGCACCGAATCTGGGGTATGACGCGGACTGATTCACAAATCTGTCACTTTTCCTTACAACAAACAGGGCGCTCAAT > SRR4302544.4476621/1‑94 (MQ=60)
GAAGTTGGGCGCTGGCTGGCACCGAATCTGGGGTATGACGCGGACTGATTCACAAATCTGTCACTTTTCCTTACAACAAACAGGGCGCTCAATG > SRR4302544.546672/1‑94 (MQ=60)
GTTGGGCGCTGGCTGGCACCGAATCTGGGGTATGACGCGGACTGATTCACAAATCTGTCACTTTTCCTTACAACAAACAGGGCGCTCAATGAGC < SRR4302544.4290140/94‑1 (MQ=60)
GTTGGGCGCTGGCTGGCACCGAATCTGGGGTATGACGCGGACTGATTCACAAATCTGTCACTTTTCCTTACAACAAACAGGGCGCTCAATGAGC < SRR4302544.2472985/94‑1 (MQ=60)
TGGGCGCTGGCTGGCACCGAATCTGGGGTATGACGCGGACTGATTCACAAATCTGTCACTTTTCCTTACAACAAACAGGGCGCTCAATGAGCGC > SRR4302544.1635338/1‑94 (MQ=60)
TGGGCGCTGGCTGGCACCGAATCTGGGGTATGACGCGGACTGATTCACAAATCTGTCACTTTTCCTTACAACAAACAGGGCGCTCAATGAGCGC > SRR4302544.1046904/1‑94 (MQ=60)
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ACCCGGACAGCAAGTACTACGCTGTAGCACAAATTCAGCGCGATCAGGTTGAAGATTATGCCCGCCGTAAAGGTATGAGCGTTACCGAAGTTGAGCGCTGGCTGGCACCGAATCTGGGGTATGACGCGGACTGATTCACAAATCTGTCACTTTTCCTTACAACAAACAGGGCGCTCAATGAGTGC > NC_000913/4224957‑4225141
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
