Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1357 |
179.3 |
9500450 |
96.1% |
9129932 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,225,139 |
T→C |
intergenic (+49/‑171) |
metH → / → yjbB |
B12‑dependent homocysteine‑N5‑methyltetrahydrofolate transmethylase/putative alpha helix protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,225,139 | 0 | T | C | 92.6%
| 253.4
/ 9.0
| 95 | intergenic (+49/‑171) | metH/yjbB | B12‑dependent homocysteine‑N5‑methyltetrahydrofolate transmethylase/putative alpha helix protein |
| Reads supporting (aligned to +/- strand): ref base T (5/2); new base C (46/42); total (51/44) |
| Fisher's exact test for biased strand distribution p-value = 4.45e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.12e-01 |
Only 100 of 113 total aligned reads displayed.
GAGCGCTGGCTGGCACCGAATCTGGGGTATGACGCGGACTGATTCACAAATCTGTCACTTTTCCTTACAACAAACAGGGCGCTCAATGAGTGCCCTGTCTCTTTATTAATATGAAACACTTATACTGGAAACAGGCT‑GGAATAATCTTAGCCGGAAAAACGAATGTCAAAAGGCACAG > NC_000913/4225049‑4225226
|
gggcgcTGGCTGGCACCGAATCTGGGGTATGACGCGGACTGATTCACAAATCTGTCACTTTTCCTTACAACAAACAGGGCGCTCAATGAgcgc > 1:1036598/3‑93 (MQ=255)
gggcgcTGGCTGGCACCGAATCTGGGGTATGACGCGGACTGATTCACAAATCTGTCACTTTTCCTTACAACAAACAGGGCGCTCAATGAgcgc > 1:1619385/3‑93 (MQ=255)
ggcgcTGGCTGGCACCGAATCTGGGGTATGACGCGGACTGATTCACAAATCTGTCACTTTTCCTTACAACAAACAGGGCGCTCAATGAGCGcc < 2:69503/92‑1 (MQ=255)
gcgcTGGCTGGCACCGAATCTGGGGTATGACGCGGACTGATTCACAAATCTGTCACTTTTCCTTACAACAAACAGGGCGCTCAATGAGCGccc < 1:3501655/93‑1 (MQ=255)
gcgcTGGCTGGCACCGAATCTGGGGTATGACGCGGACTGATTCACAAATCTGTCACTTTTCCTTACAACAAACAGGGCGCTCAATGAGCGccc < 1:2591310/93‑1 (MQ=255)
gcgcTGGCTGGCACCGAATCTGGGGTATGACGCGGACTGATTCACAAATCTGTCACTTTTCCTTACAACAAACAGGGCGCTCAATGAGCGccc < 2:4554733/93‑1 (MQ=255)
tggctggcACCGAATCTGGGGTATGACGCGGACTGATTCACAAATCTGTCACTTTTCCTTACAACAAACAGGGCGCTCAATGAGCGCCCTGtc < 1:4694870/93‑1 (MQ=255)
tggctggcACCGAATCTGGGGTATGACGCGGACTGATTCACAAATCTGTCACTTTTCCTTACAACAAACAGGGCGCTCAATGAGCGCCCTGtc < 1:4005787/93‑1 (MQ=255)
tggctggcACCGAATCTGGGGTATGACGCGGACTGATTCACAAATCTGTCACTTTTCCTTACAACAAACAGGGCGCTCAATGAGCGCCCTGtc < 2:1617809/93‑1 (MQ=255)
ggctggcACCGAATCTGGGGTATGACGCGGACTGATTCACAAATCTGTCACTTTTCCTTACAACAAACAGGGCGCTCAATGAGCGCCCTGtct > 1:2311024/1‑93 (MQ=255)
gctggcACCGAATCTGGGGTATGACGCGGACTGATTCACAAATCTGTCACTTTTCCTTACAACAAACAGGGCGCTCTATGAGCGCCCTGtctc > 1:4219409/1‑93 (MQ=255)
gctggcACCGAATCTGGGGTATGACGCGGACTGATTCACAAATCTGTCACTTTTCCTTACAACAAACAGGGCGCTCAATGAGCCCCCTGtctc < 2:1637749/93‑1 (MQ=255)
ctggcACCGAATCTGGGGTATGACGCGGACTGATTCACAAATCTGTCACTTTTCCTTACAACAAACAGGGCGCTCAATGAGCGCCCTGTctct > 2:1105845/1‑93 (MQ=255)
ctggcACCGAATCTGGGGTATGACGCGGACTGATTCACAAATCTGTCACTTTTCCTTACAACAAACAGGGCGCTCAATGAGCGCCCTGTctct > 2:1228678/1‑93 (MQ=255)
tggcACCGAATCTGGGGTATGACGCGGACTGATTCACAAATCTGTCACTTTTCCTTACAACAAACAGGGCGCTCAATGAGCGCCCTGTCTCtt < 2:1673729/93‑1 (MQ=255)
tggcACCGAATCTGGGGTATGACGCGGACTGATTCACAAATCTGTCACTTTTCCTTACAACAAACAGGGCGCTCAATGAGCGCCCTGTCTCtt < 1:2499506/93‑1 (MQ=255)
ggcACCGAATCTGGGGTATGACGCGGACTGATTCACAAATCTGTCACTTTTCCTTACAACAAACAGGGCGCTCAATGAGCGCCCTGTCTCttt > 2:2103401/1‑93 (MQ=255)
ggcACCGAAGCTGGGGTGTGACGCGGACTGATTCACAAATCTGTCATTTTGCATTACAACAAACAGGGCGTTCAATGAGCGCCCTGTCTCttt < 2:1700663/93‑1 (MQ=255)
gcACCGAATCTGGGGTATGACGCGGACTGATTCACAAATCTGTCACTTTTCCTTACAACAAACAGGGCGCTCAATGAGTGCCCTGTCTCTtta < 1:740660/93‑1 (MQ=255)
gcACCGAATCTGGGGTATGACGCGGACTGATTCACAAATCTGTCACTTTTCCTTACAACAAACAGGGCGCTCAATGAGCGCCCTGTCTCtttt > 2:2747760/1‑92 (MQ=255)
aCCGAATCTGGGGTATGACGCGGACTGATTCACAAATCTGTCACTTTTCCTTACAACAAACAGGGCGCTCAATGAGCGCCCTGTCTCTttatt < 1:1539735/93‑1 (MQ=255)
aaTCTGGGGTATGACGCGGACTGATTCACAAATCTGTCACTTTTCCTTACAACAAACAGGGCGCTCCATGAGCGCTCTGTCTCTTTATTtata > 1:4220022/1‑93 (MQ=255)
tGGGGTATGACGCGGACTGATTCACAAATCTGTCACTTTTCCTTACAACAAACAGGGCGCTCAATGAGCGCCCTGTCTCTTTATTAATATGaa > 1:1245056/1‑93 (MQ=255)
tGGGGTATGACGCGGACTGATTCACAAATCTGTCACTTTTCCTTACAACAAACAGGGCGCTCAATGAGCGCCCTGTCTCTTTATTAATATGaa > 2:3284300/1‑93 (MQ=255)
tGGGGTATGACGCGGACTGATTCACAAATCTGTCACTTTTCCTTACAACAAACAGGGCGCTCAATGAGCGCCCTGTCTCTTTATTAATATGaa > 2:1528494/1‑93 (MQ=255)
ggggTATGACGCGGACTGATTCACAAATCTGTCACTTTTCCTTACAACAAACAGGGCGCTCAATGAGCGCCCTGTCTCTTTATTAATATGaaa < 2:3762880/93‑1 (MQ=255)
gggTATGACGCGGACTGATTCACAAATCTGTCACTTTTCCTTACAACAAACAGGGCGCTCAATGAGCGCCCTGTCTCTTTATTAATATGAAac < 1:3311950/93‑1 (MQ=255)
gTATGGCGGGAACTGATTCACAAATCTGTCACTTTTCCTTACAACAAACAGGGCTCTCAATGAGCGCCCTGTCTCTTTATTAATATGAAacac < 2:2374154/93‑1 (MQ=255)
tATGACGCGGACTGATTCACAAATCTGTCACTTTTCCTTACAACAAACAGGGCGCTCAATGAGCGCCCTGTCTCTTTATTAATATGAAACACt < 1:2302347/93‑1 (MQ=255)
aTGACGAGCACTTATTCAAAACTCTAACACTTTACTTAACAACAACCGGGGCCCGCAAGGGGCGCCCTGTCTCTTTATTAATATGAAACACtt < 2:3591747/93‑1 (MQ=255)
tGACGCGGACTGATTCACAAATCTGTCACTTTTCCTTACAACAAACAGGGCGCTCAATGAGTGACCTGTCTCTTTATTAATATGAAACACTta > 1:1574009/1‑93 (MQ=255)
aCGCGGACTGATTCACAAATCTGTCACTTTTCCTTACAACAAACAGGGCGCTCAATGAGCGCCCTGTCTCTTTATTAATATGAAACACTtata < 1:3301162/93‑1 (MQ=255)
gcgGACTGATCCACAAATCTGTCACTTTTCCTTACAACAAACAGGGCGCTCAATGAGCGCCCTGTCTCTTTATTAATATGAAACACTTATACt < 2:390043/93‑1 (MQ=255)
cgGACTGATTCACAAATCTGTCACTTTTCCTTACAACAAACAGGGCGCTCAATGAGCGCCCTGTCTCTTTATTAATATGAAACACTTATACTg < 1:549841/93‑1 (MQ=255)
ggACTGATTCACAAATCTGTCACTTTTCCTTACAACAAACAGGGCGCTCAATGAGCGCCCTGTCTCTTTATTAATATGAAACACTTATACTgg > 2:4460082/1‑93 (MQ=255)
gACTGATTCACAAATCTGTCACTTTTCCTTACAACAAACAGGGCGCTCAATGAGCGCCCTGTCTCTTTATTAATATGAAACACTTATACTGGa > 1:3911562/1‑93 (MQ=255)
gACTGATTCACAAATCTGTCACTTTTCCTTACAACAAACAGGGCGCTCAATGAGCGCCCTGTCTCTTTATTAATATGAAACACTTATACTGGa > 1:3553357/1‑93 (MQ=255)
gACTGATTCACAAATCTGTCACTTTTCCTTACAACAAACAGGGCGCCCAAAGAGCGCCCTGGCCCCCTTTTAATAAGAAAAACATacacaaga > 1:4204617/1‑89 (MQ=255)
cTGATTCACAAATCTGTCACTTTTCCTTACAACAAACAGGGCGCTCAATGAGCGCCCCGTCTCTTTTTTAATATGAAACACTTATACTGGaaa > 2:142943/1‑93 (MQ=255)
tGATTCACAAATCTGTCACTTTCCCTTACAACAAACAGGGCGCTCAATGAGCGCCCTGTCTCTTTATTAATATGAAACACTTATACTGGAAAc < 2:3000715/93‑1 (MQ=255)
gATTCACAAATCTGTCACTTTTCCTTACAACAAACAGGGCGCTCAATGAGCGCCCTGTCTCTTTATTAATATGAAACACTTATACTGGAAACa > 1:4572993/1‑93 (MQ=255)
ttCACAAATCTGTCACTTTTCCTTACAACAAACAGGGCGCTCAATGAGCGCCCTGTCTCTTTATTAATATGAAACACTTATACTGGAAACAgg > 1:2198596/1‑93 (MQ=255)
ttCACAAATCTGTCACTTTTCCTTACAACAAACAGGGCGCTCAATGAGCGCCCTGTCTCTTTATTAATATGAAACACTTATACTGGAAACAgg > 1:2623059/1‑93 (MQ=255)
tCAAAAATCTGTCACTTTTCCTTACAACAAACGGGGCGCTCAATGAGCCCCCTGTCTCTTTATTAATATGAAACACTTATACTGGAAACAGGc < 1:1154871/93‑1 (MQ=255)
acaAATCTGTCACTTTTCCTTACAACAAACGGGGCGCTCAATGAGCGCCCTGTCTCTTTATTAATATGAAACACTTATACTGGAAACAGGCT‑g < 1:1336055/93‑1 (MQ=255)
acaAATCTGTCACTTTTCCTTACAACAAACAGGGCGCTCAATGAGCGCCCTGTCTCTTTATTAATATGAAACACTTATACTGGAAACAGGCT‑g < 2:4554091/93‑1 (MQ=255)
caAATCTGTCACTTTTCCTTACAACAAACAGGGCGCTCAATGAGCGCCCTGTCTCTTTATTAATATGAAACACTTATACTGGAAACAGGCT‑gg < 1:636111/93‑1 (MQ=255)
caAATCTGTCACTTTTCCTTACAACAAACAGGGCGCTCAATGAGCGCCCTGTCTCTTTATTAATATGAAACACTTATACTGGAAAAAGGCT‑gg > 2:1271649/1‑93 (MQ=255)
aaaTCTGTCACTTTTCCTTACAACAAACAGGGCGCTCAATGAGTGCCCTGTCTCTTTATTCATATGAAACACTTATACTGGAAACAGGCT‑GGa > 1:2967095/1‑93 (MQ=255)
aaTCTGTCACTTTTCCTTACAACAAACAGGGCGCTCAATGAGCGCCCTGTCTCTTTATTAATATGAAACACTTATACTGGAAACAGGCT‑GGaa > 1:314942/1‑93 (MQ=255)
aaTCTGTCACTTTTCCTTACAACAAACAGGGCGCTCAATGAGCGCCCTGTCTCTTTATTAATATGAAACACTTATACTGGAAACAGGCT‑GGaa < 2:4047678/93‑1 (MQ=255)
aaTCCGCCACTTTTCCCTACAAAAAACGGGGCGCTCAACAATCCCCCTGTCTCTTTATTAATATGAAACCCTTATACTGGAAACAGGCT‑GGaa < 1:1279865/93‑1 (MQ=255)
agcTGTCCTTTTTCCTAACAACAAAAGGGGCATGAAATGAGCGCCCTGTCTCTTTATTAATATGAAACACTTATACTGGAAACAGGCT‑GGaat < 2:1303997/91‑1 (MQ=255)
tCTGTCACTTTTCCTTACAACAAACAGGGCGCTCAATGAGCGCCCTGTCTCTTTATTAATATGAAACACTTATACTGGAAACAGGCT‑GGaata > 2:2459906/1‑93 (MQ=255)
tCTGTCACTTTTCCTTACAACAAACAGGGCGCTCAATGAGCGCCCTGTCTCTTTATTAATATGAAACACTTATACTGGAAACAGGCT‑GGaata > 1:1156548/1‑93 (MQ=255)
tGTCACTTTTCCTTACAACAAACAGGGCGCTCAATGAGCGCCCTGTCTCTTTATTAATATGAAACACTTATACTGGAAACAGGCT‑GGaataat > 1:489683/1‑93 (MQ=255)
gTCACTTTTCCTTACAACAAAGAGGGCGCTCAATGAGCGCCCTGTCTCTTTATTAATATGAAACACTTATACTGGAAACAGGCT‑GGAATAATc < 2:441335/93‑1 (MQ=255)
gTCACTTTTCCTTACAACAAACAGGGCGCTCAATGAGCGCCCTGTCTCTTTATTAATATGAAACACTTATACTGGAAACAGGCT‑GGAATAATc > 1:1661322/1‑93 (MQ=255)
gTCACTTTTCCTTACAACAAACAGGGCGCTCAATGAGCGCCCTGTCTCTTTATTAATATGAAACACTTATACTGGAAACAGGCT‑GGAATAATc > 2:2816590/1‑93 (MQ=255)
tCACTTTTCCTTACAACAAACAGGGCGCTCAATGAGCGCCCTGTCTCTTTATTAATATGAAACACTTATACTGGAAACAGGCT‑GGAATAATCt < 2:1562804/93‑1 (MQ=255)
tCACTGTTCCTTACAACAAACAGGGCGCTCAATGAGCTCCCTGTCTCTTTATTAATATGAAACACTTATACTGGAAACAGGCT‑GGAATAATCt < 1:746581/93‑1 (MQ=255)
cACTTTTCCTTACAACAAACAGGGCGCTCAATGAGCGCCCTGTCTCTTTATTAATATGAAACACTTATACTGGAAACAGGCT‑GGGATAATCtt > 2:2768917/1‑93 (MQ=255)
ccTTTTCCTTACAACAAACAGGGCGCTCAATGAGCGCCCTGTCTCTTTATTAATATGAAACACTTATACTGGAAACAGGCT‑GGAATAATCTTa < 2:1609870/92‑1 (MQ=255)
ttttCCTTACAACAAACAGGGCGCTCAATGAGTGCCCTGTCTCTTTATTAATATGAAACACTTATACTGGAAACAGGCT‑GGAATAATCTTAGc < 2:2004668/93‑1 (MQ=255)
ttttCCTAACAACAAACAGGGCGCTAAATGAGCCCCCTGTCTCTTTATTAATATGAAACACTTATACTGGAAACAGGCT‑GGAATAATCTTAGc < 1:2035410/93‑1 (MQ=255)
tCCTTACAACAAACAGGGGGCTCCAAGAGGGCCCCGTCTCTTTTTTTATATTTAAAACTTATAATCGGAACAGGCTGGGAAAAACTTTAGCCg > 2:1876739/1‑93 (MQ=255)
tCCTTACAACAAACAGGGCGCTCAATGAGCGCCCTGTCTCTTTATTAATATGAAACACTTATACTGGAAACAGGCT‑GGAATAATCTTAGCCgg < 1:3971618/93‑1 (MQ=255)
tCCTTACAACAAACAGGGCGCTCAATGAGCGCCCTGTCTCTTTATTAATATGAAACACTTATACTGGAAACAGGCT‑GGAATAATCTTAGCCgg < 2:3851146/93‑1 (MQ=255)
ccTTACAACAAACAGGGCGCTCAATGAGCGCCCTGTCTCTTTATTAATATGAAACACTTATACTGGAAACAAGCT‑GGAATAATATTAGCCGGa > 2:458164/1‑93 (MQ=255)
cTTACAACAAACAGGGCGCTCAATGAGTGCCCTGTCTCTTTATTAATATGAAACACTTATACTGGAAACAGGCT‑GGAATAATCTTAGCCGGaa > 1:1975538/1‑93 (MQ=255)
ttACAACAAACAGGGCGCTCAATGAGCGCCCTGTCTCTTTATTAATATGAAACACTTATACTGGAAACAGGCT‑GGGATAATCTTAGCCGTaaa > 1:527562/1‑93 (MQ=255)
ttACAACAAACAGGGCGCTCAATGAGCGCCCTGTCTCTTTATTAATATGAAACACTTATACTGGAAACAGGCT‑GGAATAATCTTAGCCGGaaa > 2:3142556/1‑93 (MQ=255)
ttACAACAAACAGGGCGCTCAATGAGCGCCCTGTCTCTTTATTAATATGAAACACTTATACTGGAAACAGGCT‑GGAATAATCTTAGCCGGaaa < 2:2788553/93‑1 (MQ=255)
acaacaAACAGGGCGCTCAATGAGCGCCCTGTCTCTTTATTAATATGAAACACTTATACTGGAAACAGGCT‑GGAATAATCTTAGCCGGaaaaa > 1:4085365/1‑93 (MQ=255)
aacaaacaGGGCGCTCAATGAGCGCCCTGTCTCTTTATTAATATGAAACACTTATACTGGAAACAGGCT‑GGAATAATCTTAGCCGGCAAAACg > 2:235014/1‑93 (MQ=255)
aacaaacaGGGCGCTCAATGAGCGCCCTGTCTCTTTATTAATATGAAACACTTATACTGGAAACAGGCT‑GGAATAATCTTAGCCGGAAAAACg < 1:4424948/93‑1 (MQ=255)
aacaaacaGGGCGCTCAATGAGCGCCCTGTCTCTTTATTAATATGAAACACTTATACTGGAAACAGGCT‑GGAATAATCTTAGCCGGAAAAACg > 1:4330243/1‑93 (MQ=255)
aaaaaacaGGGCGCTCAATGAGCGCCCTGTCTCTTTATTAATATGAAACACTTATACTGGAAACAGGCT‑GGAATAATCTTAGCCGGAAAAACg < 1:3012164/90‑1 (MQ=255)
aaaaacgGGGCGCTAAATGAGCTCCCTGTCTCTTTATTAATATGAAACACTTATACTGGAAACAGGCT‑GGAATAATCTTAGCCGGAAAAACGa < 2:3447524/91‑1 (MQ=255)
aaaaacgGGGCGCTAAATGAGCTCCCTGTCTCTTTATTAATATGAAACACTTATACTGGAAACAGGCT‑GGAATAATCTTAGCCGGAAAAACGa < 1:4172137/91‑1 (MQ=255)
caaacaGGGCGCTCAATGAGCGCCCTGTCTCTTTATTAATATGAAACACTTATACTGGAAACAGGCT‑GGAATAATCTTAGCCGGAAAAACGaa > 1:2389164/1‑93 (MQ=255)
aaaacaGGGCGCTCAATGAGCGCCCTGTCTCTTTATTAATATGAAACACTTATACTGGAAACAGGCT‑GGAATAATCTTAGCCGGAAAAACGaa < 1:2233497/92‑1 (MQ=255)
aaacaGGGCGCTCAATGAGCGCCCTGTCTCTTTATTAATATGAAACACTTATACTGGAAACAGGCT‑GGAATAATCTTAGCCGGAAAAACGAAt > 1:3123141/1‑93 (MQ=255)
agcggggCACTCAGGGAGCCCCCTGTCTCTTTATTAATATGAAACACTTATACTGAAAACAGGCT‑GGAATAATCTTAGCCGGAAAAACGAATg < 2:4215167/89‑1 (MQ=255)
aacaGGGCGCTCAATGAGCGCCCTGTCTCTTTTTTAATATGAAACACTTATACTGGAAACAGGCT‑GGAATAATCTTAGCCGGAAAAAAGAATg > 1:1959440/1‑93 (MQ=255)
acggggCGCTCAATGAGCCCCCTGTCTCTTTATTAATATGAAACACTTATACTGGAAACAGGCT‑GGAATAATCTTAGCCGGAAAAACGAATGt < 1:309447/90‑1 (MQ=255)
caGGGCGCTCAATGAGTGCCCTGTCTCTTTATTAATATGAAACACTTATACTGGAAACAGGCT‑GGAATAATCTTAGCCGGAAAAACGAATATc > 2:4006359/1‑93 (MQ=255)
caGGGCGCTCAATGAGCGCCCTGTCTCTTTATTAATATGAAACACTTATACTGGAAACAGGCT‑GGAATAATCTTAGCCGGAAAAACGAATGTc < 1:2694478/93‑1 (MQ=255)
caGGGCGCTCAATGAGCGCCCTGTCTCTTTATTAATATGAAACACTTATACTGGAAACAGGCT‑GGAATAATCTTAGCCGGAAAAAAGAATGTc > 1:4545064/1‑93 (MQ=255)
aGGGCGCTCAATGAGCGCCCTGTCTCTTTATTAATATGAAACACTTATACTGGAAACAGGCT‑GGAATAATCTTAGCCGGAAAAACGAATGTCa > 1:2909787/1‑93 (MQ=255)
gggCGCTCAATGAGCGCCCTGTCTCTTTATTAATATGAAACACTTATACTGGAAACAGGCT‑GGAATAATCTTAGCCGGAAAAACGAATGTCaa > 2:1052547/1‑93 (MQ=255)
gcgcTCAATGAGCGCCCTGTCTCTTTATTAATATGAAACACTTATACTGGAAACAGGCT‑GGAATAATCTTAGCCGGAAAAACGAATGTCaaaa < 2:2224376/93‑1 (MQ=255)
gcTCAATGAGCGCCCTGTCTCTTTATTAATATGAAACACTTATACTGGAAACAGGCT‑GGAATAATCTTAGCCGGAAAAACGAATGTCAAAAgg > 1:1038196/1‑93 (MQ=255)
gcTCAATGAGCGCCCTGTCTCTTTATTAATATGAAACACTTATACTGGAAACAGGCT‑GGAATAATCTTAGCCGGAAAAACGAATGTCAAAAgg > 2:3801448/1‑93 (MQ=255)
gcTCAATGAGCGCCCTGTCTCTTTATTAATATGAAACACTTATACTGGAAACAGGCT‑GGAATAATCTTAGCCGGAAAAACGAATGTCAAAAgg > 1:1320567/1‑93 (MQ=255)
gcTCAATGAGCGCCCTGTCTCTTTATTAATATGAAACACTTATACTGGAAACAGGCT‑GGAATAATCTTAGCCGGAAAAACGAATGTCAAAAgg > 2:1592270/1‑93 (MQ=255)
gcTCAATGAGCGCCCTGTCTCTTTATTAATATGAAACACTTATACTGGAAACAGGCT‑GGAATAATCTTAGCCGGAAAAACGAATGTCAAAAgg < 1:1512010/93‑1 (MQ=255)
tCAATGAGCGCCCTGTCTCTTTATTAATATGAAACACTTATACTGGAAACAGGCT‑GGAATAATCTTAGCCGGAAAAACGAATGTCAAAAggga > 1:945388/1‑91 (MQ=255)
aTGAGCGCCCTGTCTCTTTATTAATATGAAACACTTATACTGGAAACAGGCT‑GGAATAATCTTAGCCGGAAAAACGAATGTCAAAAGGCACAg > 2:1115223/1‑93 (MQ=255)
aTGAGCGCCCTGTCTCTTTATTAATATGAAACACTTATACTGGAAACAGGCT‑GGAATAATCTTAGCCGGAAAAACGAATGTCAAAAGGCACAg > 2:2916311/1‑93 (MQ=255)
|
GAGCGCTGGCTGGCACCGAATCTGGGGTATGACGCGGACTGATTCACAAATCTGTCACTTTTCCTTACAACAAACAGGGCGCTCAATGAGTGCCCTGTCTCTTTATTAATATGAAACACTTATACTGGAAACAGGCT‑GGAATAATCTTAGCCGGAAAAACGAATGTCAAAAGGCACAG > NC_000913/4225049‑4225226
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GTTGAGCGCTGGCTGGCACCGAATCTGGGGTATGACGCGGACTGATTCACAAATCTGTCACTTTTCCTTACAACAAACAGGGCGCTCAATGAGTGCCCTGTCTCTTTATTAATATGAAACACTTATACTGGAAACAGGCTGGAATAATCTTAGCCGGAAAAACGAATGTCAAAAGGCACAGTAAAGA > NC_000913/4225046‑4225232
|
GTTGGGCGCTGGCTGGCACCGAATCTGGGGTATGACGCGGACTGATTCACAAATCTGTCACTTTTCCTTACAACAAACAGGGCGCTCAATGAGC < SRR4302544.2472985/94‑1 (MQ=60)
GTTGGGCGCTGGCTGGCACCGAATCTGGGGTATGACGCGGACTGATTCACAAATCTGTCACTTTTCCTTACAACAAACAGGGCGCTCAATGAGC < SRR4302544.4290140/94‑1 (MQ=60)
TGGGCGCTGGCTGGCACCGAATCTGGGGTATGACGCGGACTGATTCACAAATCTGTCACTTTTCCTTACAACAAACAGGGCGCTCAATGAGCGC > SRR4302544.1046904/1‑94 (MQ=60)
TGGGCGCTGGCTGGCACCGAATCTGGGGTATGACGCGGACTGATTCACAAATCTGTCACTTTTCCTTACAACAAACAGGGCGCTCAATGAGCGC > SRR4302544.1635338/1‑94 (MQ=60)
GCGCTGGCTGGCACCGAATCTGGGGTATGACGCGGACTGATTCACAAATCTGTCACTTTTCCTTACAACAAACAGGGCGCTCAATGAGCGCCCT < SRR4302544.2616234/94‑1 (MQ=60)
GCGCTGGCTGGCACCGAATCTGGGGTATGACGCGGACTGATTCACAAATCTGTCACTTTTCCTTACAACAAACAGGGCGCTCAATGAGCGCCCT < SRR4302544.3208580/94‑1 (MQ=60)
GCGCTGGCTGGCACCGAATCTGGGGTATGACGCGGACTGATTCACAAATCTGTCACTTTTCCTTACAACAAACAGGGCGCTCAATGAGCGCCCT < SRR4302544.3535061/94‑1 (MQ=60)
CGCTGGCTGGCACCGAATCTGGGGTATGACGCGGACTGATTCACAAATCTGTCACTTTTCATTACAACAAACAGGGCGCTCAATGAGCGCCCTG < SRR4302544.94162/94‑1 (MQ=60)
TGGCTGGCACCGAATCTGGGGTATGACGCGGACTGATTCACAAATCTGTCACTTTTCCTTACAACAAACAGGGCGCTCAATGAGCGCCCTGTCT < SRR4302544.4741228/94‑1 (MQ=60)
TGGCTGGCACCGAATCTGGGGTATGACGCGGACTGATTCACAAATCTGTCACTTTTCCTTACAACAAACAGGGCGCTCAATGAGCGCCCTGTCT < SRR4302544.4045649/94‑1 (MQ=60)
TGGCTGGCACCGAATCTGGGGTATGACGCGGACTGATTCACAAATCTGTCACTTTTCCTTACAACAAACAGGGCGCTCAATGAGCGCCCTGTCT > SRR4302544.1387695/1‑94 (MQ=60)
TGGCTGGCACCGAATCTGGGGTATGACGCGGACTGATTCACAAATCTGTCACTTTTCCTTACAACAAACAGGGCGCTCAATGAGCGCCCTGTCT > SRR4302544.2332875/1‑94 (MQ=60)
GGCTGGCACCGAATCTGGGGTATGACGCGGACTGATTCACAAATCTGTCACTTTTCCTTACAACAAACAGGGCGCTCTATGAGCGCCCTGTCTC > SRR4302544.4262130/1‑94 (MQ=60)
TGGCACCGAATCTGGGGTATGACGCGGACTGATTCACAAATCTGTCACTTTTCCTTACAACAAACAGGGCGCTCAATGAGCGCCCTGTCTCTTT < SRR4302544.2523467/94‑1 (MQ=60)
GCACCGAATCTGGGGTATGACGCGGACTGATTCACAAATCTGTCACTTTTCCTTACAACAAACAGGGCGCTCAATGAGTGCCCTGTCTCTTTAT < SRR4302544.747912/94‑1 (MQ=60)
ACCGAATCTGGGGTATGACGCGGACTGATTCACAAATCTGTCACTTTTCCTTACAACAAACAGGGCGCTCAATGAGCGCCCTGTCTCTTTATTA < SRR4302544.1555034/94‑1 (MQ=60)
GAATCTGGGGTATGACGCGGACTGATTCACAAATCTGTCACTTTTCCTTACAACAAACAGGGCGCTCCATGAGCGCTCTGTCTCTTTATTTATA > SRR4302544.4262760/1‑94 (MQ=60)
CTGGGGTATGACGCGGACTGATTCACAAATCTGTCACTTTTCCTTACAACAAACAGGGCGCTCAATGAGCGCCCTGTCTCTTTATTAATATGAA > SRR4302544.1257327/1‑94 (MQ=60)
GGGTATGACGCGGACTGATTCACAAATCTGTCACTTTTCCTTACAACAAACAGGGCGCTCAATGAGCGCCCTGTCTCTTTATTAATATGAAACA < SRR4302544.3343489/94‑1 (MQ=60)
GTATGACGCGGACTGATTCACAAATCTGTCACTTTTCCTTACAACAAACAGGGCGCTCAATGAGCGCCCTGTCTCTTTATTAATATGAAACACT > SRR4302544.412825/1‑94 (MQ=60)
TATGACGCGGACTGATTCACAAATCTGTCACTTTTCCTTACAACAAACAGGGCGCTCAATGAGCGCCCTGTCTCTTTATTAATATGAAACACTT < SRR4302544.2324090/94‑1 (MQ=60)
ATGACGCGGACTGATTCACAAATCTGTCACTTTTCCTTACAACAAACAGGGCGCTCAATGAGTGACCTGTCTCTTTATTAATATGAAACACTTA > SRR4302544.1589569/1‑94 (MQ=60)
TGACGCGGACTGATTCACAAATCTGTCACTTTTCCTTACAACAAACAGGGCGCTCAATGAGCGCCCTGTCTCTTTATTAATATGAAACACTTAT < SRR4302544.4669221/94‑1 (MQ=60)
ACGCGGACTGATTCACAAATCTGTCACTTTTCCTTACAACAAACAGGGCGCTCAATGAGCGCCCTGTCTCTTTATTAATATGAAACACTTATAC < SRR4302544.3332604/94‑1 (MQ=60)
CGGACTGATTCACAAATCTGTCACTTTTCCTTACAACAAACAGGGCGCTCAATGAGCGCCCTGTCTCTTTATTAATATGAAACACTTATACTGG < SRR4302544.555230/94‑1 (MQ=60)
GGACTGATTCACAAATCTGTCACTTTTCCTTACAACAAACAGGGCGCTCAATGAGCGCCCTGTCTCTTTATTAATATGAAACACTTATACTGGA > SRR4302544.3950420/1‑94 (MQ=60)
GGACTGATTCACAAATCTGTCACTTTTCCTTACAACAAACAGGGCGCTCAATGAGCGCCCTGTCTCTTTATTAATATGAAACACTTATACTGGA > SRR4302544.3587397/1‑94 (MQ=60)
TGATTCACAAATCTGTCACTTTTCCTTACAACAAACAGGGCGCTCAATGAGCGCCCTGTCTCTTTATTAATATGAAACACTTATACTGGAAACA > SRR4302544.4618561/1‑94 (MQ=60)
TGATTCACAAATCTGTCACTTTTCCTTACAACAAACAGGGCGCTCAATGAGCGCCCTGTCTCTTTATTAATATGAAACACTTATACTGGAAACA < SRR4302544.2107651/94‑1 (MQ=60)
GATTCACAAATCTGTCACTTTTCCTTACAACAAACAGGGCGCTCCATGAGCGCCCTGTCTCTTTATTAATATGAAACACTTATACTGGAAACAG > SRR4302544.2705867/1‑94 (MQ=60)
ATTCACAAATCTGTCACTTTTCCTTACAACAAACAGGGCGCTCAATGAGCGCCCTGTCTCTTTATTAATATGAAACACTTATACTGGAAACAGG > SRR4302544.2648212/1‑94 (MQ=60)
ATTCACAAATCTGTCACTTTTCCTTACAACAAACAGGGCGCTCAATGAGCGCCCTGTCTCTTTATTAATATGAAACACTTATACTGGAAACAGG > SRR4302544.2219318/1‑94 (MQ=60)
TCAAAAATCTGTCACTTTTCCTTACAACAAACGGGGCGCTCAATGAGCCCCCTGTCTCTTTATTAATATGAAACACTTATACTGGAAACAGGCT < SRR4302544.1166359/94‑1 (MQ=60)
ACAAATCTGTCACTTTTCCTTACAACAAACGGGGCGCTCAATGAGCGCCCTGTCTCTTTATTAATATGAAACACTTATACTGGAAACAGGCTGG < SRR4302544.1349228/94‑1 (MQ=60)
CAAATCTGTCACTTTTCCTTACAACAAACAGGGCGCTCAATGAGTGCCCTGTCTCTTTATTCATATGAAACACTTATACTGGAAACAGGCTGGA > SRR4302544.2995559/1‑94 (MQ=60)
CAAATCTGTCACTTTTCCTTACAACAAACAGGGCGCTCAATGAGCGCCCTGTCTCTTTATTAATATGAAACACTTATACTGGAAACAGGCTGGA < SRR4302544.642383/94‑1 (MQ=60)
AAATCTGTCACTTTTCCTTACAACAAACAGGGCGCTCAATGAGCGCCCTGTCTCTTTATTAATATGAAACACTTATACTGGAAACAGGCTGGAA > SRR4302544.318214/1‑94 (MQ=60)
ATCTGTCACTTTTCCTTACAACAAACAGGGCGCTCAATGAGCGCCCTGTCTCTTTATTAATATGAAACACTTATACTGGAAACAGGCTGGAATA > SRR4302544.1168059/1‑94 (MQ=60)
CTGTCACTTTTCCTTACAACAAACAGGGCGCTCAATGAGCGCCCTGTCTCTTTATTAATATGAAACACTTATACTGGAAACAGGCTGGAATAAT > SRR4302544.494487/1‑94 (MQ=60)
TGTCACTTTTCCTTACAACAAACAGGGCGCTCAATGAGCGCCCTGTCTCTTTATTAATATGAAACACTTATACTGGAAACAGGCTGGAATAATC > SRR4302544.1677682/1‑94 (MQ=60)
TCACTGTTCCTTACAACAAACAGGGCGCTCAATGAGCTCCCTGTCTCTTTATTAATATGAAACACTTATACTGGAAACAGGCTGGAATAATCTT < SRR4302544.753897/94‑1 (MQ=60)
TTTTCCTAACAACAAACAGGGCGCTAAATGAGCCCCCTGTCTCTTTATTAATATGAAACACTTATACTGGAAACAGGCTGGAATAATCTTAGCC < SRR4302544.2055083/94‑1 (MQ=60)
TCCTTACAACAAACAGGGCGCTCAATGAGCGCCCTGTCTCTTTATTAATATGAAACACTTATACTGGAAACAGGCTGGAATAATCTTAGCCGGA < SRR4302544.4011125/94‑1 (MQ=60)
CCTTACAACAAACAGGGCGCTCAATGAGTGCCCTGTCTCTTTATTAATATGAAACACTTATACTGGAAACAGGCTGGAATAATCTTAGCCGGAA > SRR4302544.1994736/1‑94 (MQ=60)
CTTACAACAAACAGGGCGCTCAATGAGCGCCCTGTCTCTTTATTAATATGAAACACTTATACTGGAAACAGGCTGGGATAATCTTAGCCGTAAA > SRR4302544.532798/1‑94 (MQ=60)
TACAACAAACAGGGCGCTCAATGAGCGCCCTGTCTCTTTATTAATATGAAACACTTATACTGGAAACAGGCTGGAATAATCTTAGCCGGAAAAA > SRR4302544.4125997/1‑94 (MQ=60)
CAACAAACAGGGCGCTCAATGAGCGCCCTGTCTCTTTATTAATATGAAACACTTATACTGGAAACAGGCTGGAATAATCTTAGCCGGAAAAACG > SRR4302544.4374337/1‑94 (MQ=60)
AACAAACAGGGCGCTCAATGAGCGCCCTGTCTCTTTATTAATATGAAACACTTATACTGGAAACAGGCTGGAATAATCTTAGCCGGAAAAACGA < SRR4302544.4469588/94‑1 (MQ=60)
AAAAAACAGGGCGCTCAATGAGCGCCCTGTCTCTTTATTAATATGAAACACTTATACTGGAAACAGGCTGGAATAATCTTAGCCGGAAAAACGA < SRR4302544.3041041/94‑1 (MQ=60)
ACAAACAGGGCGCTCAATGAGCGCCCTGTCTCTTTATTAATATGAAACACTTATACTGGAAACAGGCTGGAATAATCTTAGCCGGAAAAACGAA > SRR4302544.2411788/1‑94 (MQ=60)
AAAAACGGGGCGCTAAATGAGCTCCCTGTCTCTTTATTAATATGAAACACTTATACTGGAAACAGGCTGGAATAATCTTAGCCGGAAAAACGAA < SRR4302544.4213463/94‑1 (MQ=60)
CAAACAGGGCGCTCAATGAGCGCCCTGTCTCTTTATTAATATGAAACACTTATACTGGAAACAGGCTGGAATAATCTTAGCCGGAAAAACGAAT > SRR4302544.3152825/1‑94 (MQ=60)
AAAACAGGGCGCTCAATGAGCGCCCTGTCTCTTTATTAATATGAAACACTTATACTGGAAACAGGCTGGAATAATCTTAGCCGGAAAAACGAAT < SRR4302544.2254503/94‑1 (MQ=60)
AAACAGGGCGCTCAATGAGCGCCCTGTCTCTTTTTTAATATGAAACACTTATACTGGAAACAGGCTGGAATAATCTTAGCCGGAAAAAAGAATG > SRR4302544.1978452/1‑94 (MQ=60)
ACGGGGCGCTCAATGAGCCCCCTGTCTCTTTATTAATATGAAACACTTATACTGGAAACAGGCTGGAATAATCTTAGCCGGAAAAACGAATGTC < SRR4302544.312667/94‑1 (MQ=60)
ACAGGGCGCTCAATGAGCGCCCTGTCTCTTTATTAATATGAAACACTTATACTGGAAACAGGCTGGAATAATCTTAGCCGGAAAAAAGAATGTC > SRR4302544.4590469/1‑94 (MQ=60)
CAGGGCGCTCAATGAGCGCCCTGTCTCTTTATTAATATGAAACACTTATACTGGAAACAGGCTGGAATAATCTTAGCCGGAAAAACGAATGTCA > SRR4302544.2937781/1‑94 (MQ=60)
CAGGGCGCTCAATGAGCGCCCTGTCTCTTTATTAATATGAAACACTTATACTGGAAACAGGCTGGAATAATCTTAGCCGGAAAAACGAATGTCA < SRR4302544.2720344/94‑1 (MQ=60)
CGCTCAATGAGCGCCCTGTCTCTTTATTAATATGAAACACTTATACTGGAAACAGGCTGGAATAATCTTAGCCGGAAAAACGAATGTCAAAAGG > SRR4302544.1048512/1‑94 (MQ=60)
CGCTCAATGAGCGCCCTGTCTCTTTATTAATATGAAACACTTATACTGGAAACAGGCTGGAATAATCTTAGCCGGAAAAACGAATGTCAAAAGG > SRR4302544.1333556/1‑94 (MQ=60)
GCTCAATGAGCGCCCTGTCTCTTTATTAATATGAAACACTTATACTGGAAACAGGCTGGAATAATCTTAGCCGGAAAAACGAATGTCAAAAGGC < SRR4302544.1526996/94‑1 (MQ=60)
CTCAATGAGCGCCCTGTCTCTTTATTAATATGAAACACTTATACTGGAAACAGGCTGGAATAATCTTAGCCGGAAAAACGAATGTCAAAAGGGA > SRR4302544.954699/1‑94 (MQ=60)
GAGCGCCCTGTCTCTTTATTAATATGAAACACTTATACTGGAAACAGGCTGGAATAATCTTAGCCGGAAAAACGAATGTCAAAAGGCACAGTAA > SRR4302544.288703/1‑94 (MQ=60)
CGCCCTGTCTCTTTATTAATATGAAACACTTATACTGGAAACAGGCTGGAATAATCTTAGCCGGAAAAACGAATGTCAAAAGGCACAGTAAAGA > SRR4302544.4619386/1‑94 (MQ=60)
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GTTGAGCGCTGGCTGGCACCGAATCTGGGGTATGACGCGGACTGATTCACAAATCTGTCACTTTTCCTTACAACAAACAGGGCGCTCAATGAGTGCCCTGTCTCTTTATTAATATGAAACACTTATACTGGAAACAGGCTGGAATAATCTTAGCCGGAAAAACGAATGTCAAAAGGCACAGTAAAGA > NC_000913/4225046‑4225232
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
