Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1357 |
179.3 |
9500450 |
96.1% |
9129932 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,265,202 |
A→G |
L170L (TTA→TTG) |
tyrB → |
tyrosine aminotransferase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,265,202 | 0 | A | G | 97.7%
| 414.6
/ ‑1.8
| 133 | L170L (TTA→TTG) | tyrB | tyrosine aminotransferase |
| Reads supporting (aligned to +/- strand): ref base A (1/2); new base G (67/63); total (68/65) |
| Fisher's exact test for biased strand distribution p-value = 6.14e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.97e-01 |
Only 100 of 141 total aligned reads displayed.
GGCTGGATTCGAAGTGAGTACTTACCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTACCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGATCAGTGGGATGCGGTGATTGA > NC_000913/4265112‑4265291
|
ggCTGGATTCGAAGTGAGTACTTACCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACACTGAAAACATTAcc < 2:1594434/93‑1 (MQ=255)
gCTGGATTCGAAGTGAGTACTTACCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCt > 2:3256256/1‑93 (MQ=255)
gCTGGATTCGAAGTGAGTACTTACCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCt > 2:4638858/1‑93 (MQ=255)
gtGGATTCGAAGTGAGTACTTACCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTg < 1:1436831/92‑1 (MQ=255)
cTGGATTCGAAGTGAGTACTTACCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGACAACATTACCTg > 1:4656711/1‑93 (MQ=255)
ggATTCGAAGTGAGTACTTACCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATtgcctgcc > 2:2514284/1‑93 (MQ=255)
ggATTCGAAGTGAGTACTTACCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATtgcctgcc > 1:2988378/1‑93 (MQ=255)
ttCGAAGTGAGTACTTACCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGc > 1:1051507/1‑93 (MQ=255)
tCGAAGTGAGTACTTACCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCa < 1:2472380/93‑1 (MQ=255)
gAAGTGAGTACTTACCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGt > 2:788396/1‑93 (MQ=255)
gAAGTGAGTACTTACCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGt > 2:764318/1‑93 (MQ=255)
gAAGTGAGTACTTACCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGt < 2:1601552/93‑1 (MQ=255)
aaGTGAGTACTTACCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTa > 2:603539/1‑93 (MQ=255)
aGTGAGTACTTACCCCTGGTATGACGAAGCGACTAACGGCGTGCTCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTAt < 1:3280620/93‑1 (MQ=255)
aGTGAGTACTTACCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTAt > 1:2793861/1‑93 (MQ=255)
gTGAGTACTTACCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTAtt > 1:1896313/1‑93 (MQ=255)
tGAGTACTTACCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATtg > 2:4047133/1‑93 (MQ=255)
tGAGTACTTACCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATtg < 1:4144991/93‑1 (MQ=255)
gAGTACTTACCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATtgt < 1:4544206/93‑1 (MQ=255)
gTACTTATCCCTGGGATGACGAAGCGACTAACGGCGTACGCTTTAATGACCTGGTGGCGGCGATGAAAACATTGCCTGCCCGCAGTATtgtgc < 2:3903644/93‑2 (MQ=255)
gTACTTACCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTgtgt < 2:1228246/93‑1 (MQ=255)
gTACTTACCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTgtgt < 1:1716109/93‑1 (MQ=255)
gTACTTACCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTgtgt < 1:4200148/93‑1 (MQ=255)
tACTTACCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGtt < 2:3134172/93‑1 (MQ=255)
tACTTACCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGtt < 2:3004626/93‑1 (MQ=255)
tACTTACCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGtt < 2:3883293/93‑1 (MQ=255)
tACTTACCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGtt < 2:3608118/93‑1 (MQ=255)
tACCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGGCCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTtgctg < 1:4704631/93‑1 (MQ=255)
aCCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTtgctgc < 1:3016071/93‑1 (MQ=255)
cccTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCAt > 2:1067694/1‑93 (MQ=255)
cccTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCAt > 2:1819557/1‑93 (MQ=255)
ccTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATc > 1:1252681/1‑93 (MQ=255)
cTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATcc < 2:2166549/93‑1 (MQ=255)
tGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCa > 2:1069265/1‑93 (MQ=255)
ggTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAACCATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCAt < 1:3514715/93‑1 (MQ=255)
ggTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCAt < 2:1810237/93‑1 (MQ=255)
aCGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGcc > 1:1397737/1‑93 (MQ=255)
aCGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGcc < 1:2422076/93‑1 (MQ=255)
cGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCca > 1:1796512/1‑93 (MQ=255)
cGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCca > 1:1796513/1‑93 (MQ=255)
cGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCca > 1:2114922/1‑93 (MQ=255)
gAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCcac > 2:5726/1‑93 (MQ=255)
gAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCcac > 2:1234440/1‑93 (MQ=255)
aGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACaa < 2:1774956/93‑1 (MQ=255)
gCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAAc > 1:1649446/1‑93 (MQ=255)
gCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAAc < 2:858497/93‑1 (MQ=255)
gACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAAccc < 1:3377309/93‑1 (MQ=255)
gACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAAccc < 1:3074942/93‑1 (MQ=255)
aCTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCa < 1:909025/93‑1 (MQ=255)
cTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCaa > 1:2905735/1‑93 (MQ=255)
cTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCaa > 2:3496408/1‑93 (MQ=255)
cTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCaa > 1:3649818/1‑93 (MQ=255)
tAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAAc > 2:2827874/1‑93 (MQ=255)
tAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAAc < 1:3993995/93‑1 (MQ=255)
aCGGCGTGCGCTTTAATTACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACgg > 1:3924090/1‑93 (MQ=255)
aCGGCGCGCTCTTTAATGACCTGTTGGCGGAGTTGAAAACATTGCCTGCCCTCAGTATTGTGTTGCTGCATGCATGTTGCCACAACCCAACgg < 1:913502/93‑1 (MQ=255)
cGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACggg > 2:2507212/1‑93 (MQ=255)
cGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACggg > 2:3755081/1‑93 (MQ=255)
cGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACggg < 1:2309039/93‑1 (MQ=255)
ggCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCCCTATTGTGTTGCTGCATTCATGTTGCCACAACCCAACgaga > 2:2938407/1‑90 (MQ=255)
ggCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGt < 1:882388/93‑1 (MQ=255)
gCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTg < 2:1155004/93‑1 (MQ=255)
gcgcTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGa < 2:879146/93‑1 (MQ=255)
gcgcTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGa > 1:109606/1‑93 (MQ=255)
gcgcTTGAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTAGTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGa < 1:1153671/93‑1 (MQ=255)
gcTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGCGCCGAtc > 1:67578/1‑93 (MQ=255)
cTTTAGTGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGAtct < 2:1994602/93‑1 (MQ=255)
cTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGAtct < 2:722502/93‑1 (MQ=255)
cTTTAAGGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGAtct < 2:1994603/93‑1 (MQ=255)
tttAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGAtctc < 2:3065739/93‑1 (MQ=255)
ttAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCa > 2:4534913/1‑93 (MQ=255)
ttAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCAAACGGGTGCCGATCTCa > 1:2492861/1‑93 (MQ=255)
aaTGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACt < 2:1930342/93‑1 (MQ=255)
aTGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACAGGTGCCGATCTCACTa > 2:4697327/1‑93 (MQ=255)
gACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAAt > 1:2553901/1‑93 (MQ=255)
aCCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATg < 2:1644332/93‑1 (MQ=255)
aCCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATg < 1:2996828/93‑1 (MQ=255)
ccTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGa < 1:1317484/93‑1 (MQ=255)
ccTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGa > 2:4629839/1‑93 (MQ=255)
cTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGAt > 2:428933/1‑93 (MQ=255)
tGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGATc < 1:3781656/93‑1 (MQ=255)
tGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGATCAGt < 1:2752596/93‑1 (MQ=255)
tGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGATCAGt < 1:2045948/93‑1 (MQ=255)
gCGACGCTGAAAACATTGCCTGCCCGCAGTATTGGGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGATCAGTgg < 2:2450143/93‑1 (MQ=255)
ggACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGATCAGTggg < 1:2410862/92‑1 (MQ=255)
aCGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGATCAGTGGGAt > 2:4323156/1‑93 (MQ=255)
aCGCTGAAAACATTACCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGATCAGTGGGAt < 1:1580947/93‑1 (MQ=255)
gttGAGAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGATCAGTGGGATGc < 2:2255083/91‑1 (MQ=255)
cTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGATCAGTGGGATGCg > 1:1471765/1‑93 (MQ=255)
cTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGATCAGTGGGATGCg > 2:1566169/1‑93 (MQ=255)
tGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGATCAGTGGGATGCgg > 2:4708566/1‑93 (MQ=255)
aaaCATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGATCAGTGGGATGCGGTGa < 1:893172/93‑1 (MQ=255)
aaaCATTGCCTGCCCGCAGGATTGTGTTGCTGCATCAAGGTTGCCGCAACCCAACGGGTGCCGATCTCACTAATGATCAGTGGGATGCGGTGa < 1:2352470/93‑1 (MQ=255)
aaCATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGATCAGTGGGATGCGGTGAt < 1:980361/93‑1 (MQ=255)
aCATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGATCAGTGGGATGCGGTGAtt < 1:441579/93‑1 (MQ=255)
cATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGATCAGTGGGATGCGGTGATTg < 1:2962020/93‑1 (MQ=255)
cATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGATCAGTGGGATGCGGTGATTg < 2:1945833/93‑1 (MQ=255)
cATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGATCAGTGGGATGCGGTGATTg > 1:3131353/1‑93 (MQ=255)
aTTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGGTCTCACTAATGATCAGTGGGATGCGGTGATTGa > 1:3287706/1‑93 (MQ=255)
aTTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGATCAGTGGGATGCGGTGATTGa > 2:2009205/1‑93 (MQ=255)
|
GGCTGGATTCGAAGTGAGTACTTACCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTACCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGATCAGTGGGATGCGGTGATTGA > NC_000913/4265112‑4265291
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CGGGGCTGGATTCGAAGTGAGTACTTACCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTACCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGATCAGTGGGATGCGGTGATTGAAA > NC_000913/4265109‑4265293
|
CGGGGCTGGATTCGAAGTGAGTACTTACCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTG > SRR4302544.4546817/1‑94 (MQ=60)
GGGCTGGATTCGAAGTGAGTACTTACCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCC > SRR4302544.914148/1‑94 (MQ=60)
GGGCTGGATTCGAAGTGAGTACTTACCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCC < SRR4302544.3516326/94‑1 (MQ=60)
GGGCTGGATTCGAAGTGAGTACTTACCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCC < SRR4302544.790916/94‑1 (MQ=60)
GGCTGGATTCGAAGTGAGTACTTACCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCT < SRR4302544.1249978/94‑1 (MQ=60)
GCTGGATTCGAAGTGAGTACTTACCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGACAACATTACCTG > SRR4302544.4702784/1‑94 (MQ=60)
GTGGATTCGAAGTGAGTACTTACCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGC < SRR4302544.1451137/94‑1 (MQ=60)
TGGATTCGAAGTGAGTACTTACCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCC > SRR4302544.3017037/1‑94 (MQ=60)
ATTCGAAGTGAGTACTTACCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGC > SRR4302544.1061927/1‑94 (MQ=60)
TCGAAGTGAGTACTTACCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAG < SRR4302544.2496016/94‑1 (MQ=60)
AAGTGAGTACTTACCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGCAAACATTGCCTGCCCGCAGTAT > SRR4302544.818257/1‑94 (MQ=60)
AAGTGAGTACTTACCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTAT > SRR4302544.2820763/1‑94 (MQ=60)
AGTGAGTACTTACCCCTGGTATGACGAAGCGACTAACGGCGTGCTCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATT < SRR4302544.3311884/94‑1 (MQ=60)
AGTGAGTACTTACCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATT > SRR4302544.1914639/1‑94 (MQ=60)
TGAGTACTTACCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGT < SRR4302544.4186025/94‑1 (MQ=60)
GAGTACTTACCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTG < SRR4302544.4589605/94‑1 (MQ=60)
AGTACTTACCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGT > SRR4302544.2121298/1‑94 (MQ=60)
GTACTTACCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTT < SRR4302544.4242070/94‑1 (MQ=60)
GTACTTACCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTT < SRR4302544.1732983/94‑1 (MQ=60)
GTACTTACCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTT < SRR4302544.4087444/94‑1 (MQ=60)
GTACTTACCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTT < SRR4302544.305582/94‑1 (MQ=60)
CTTACCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCGGTATTGTGTTGCT > SRR4302544.1690274/1‑94 (MQ=60)
TACCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGGCCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGC < SRR4302544.4751125/94‑1 (MQ=60)
ACCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCA < SRR4302544.3044986/94‑1 (MQ=60)
CCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATC > SRR4302544.1265006/1‑94 (MQ=60)
CCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATC > SRR4302544.3012473/1‑94 (MQ=60)
GGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAACCATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATG < SRR4302544.3548254/94‑1 (MQ=60)
TATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTT < SRR4302544.996401/94‑1 (MQ=60)
GACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCC > SRR4302544.1411669/1‑94 (MQ=60)
ACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCA > SRR4302544.1814081/1‑94 (MQ=60)
ACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCA < SRR4302544.2445140/94‑1 (MQ=60)
ACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCA > SRR4302544.2135244/1‑94 (MQ=60)
ACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCA > SRR4302544.1814080/1‑94 (MQ=60)
AGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAAC > SRR4302544.1665719/1‑94 (MQ=60)
GACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCA < SRR4302544.3409546/94‑1 (MQ=60)
GACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCA < SRR4302544.3104247/94‑1 (MQ=60)
ACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAA > SRR4302544.2933711/1‑94 (MQ=60)
ACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAA > SRR4302544.3686235/1‑94 (MQ=60)
ACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAA < SRR4302544.918008/94‑1 (MQ=60)
TAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACG > SRR4302544.2883420/1‑94 (MQ=60)
TAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACG < SRR4302544.4033752/94‑1 (MQ=60)
AACGGCGTGCGCTTTAATTACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGG > SRR4302544.3963069/1‑94 (MQ=60)
ACGGCGCGCTCTTTAATGACCTGTTGGCGGAGTTGAAAACATTGCCTGCCCTCAGTATTGTGTTGCTGCATGCATGTTGCCACAACCCAACGGG < SRR4302544.922533/94‑1 (MQ=60)
CGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGT > SRR4302544.4278158/1‑94 (MQ=60)
CGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGT < SRR4302544.2330868/94‑1 (MQ=60)
GGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTG < SRR4302544.891130/94‑1 (MQ=60)
GGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTG < SRR4302544.1824705/94‑1 (MQ=60)
TGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGA > SRR4302544.110607/1‑94 (MQ=60)
GCGCTTGAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTAGTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGAT < SRR4302544.1165145/94‑1 (MQ=60)
CGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGCGCCGATC > SRR4302544.68250/1‑94 (MQ=60)
CTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTC > SRR4302544.4605673/1‑94 (MQ=60)
TTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCAAACGGGTGCCGATCTCA > SRR4302544.2516735/1‑94 (MQ=60)
ATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAA > SRR4302544.149185/1‑94 (MQ=60)
TGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAAT > SRR4302544.2578419/1‑94 (MQ=60)
TGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAAT > SRR4302544.2578420/1‑94 (MQ=60)
ACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGA < SRR4302544.3025567/94‑1 (MQ=60)
CCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGAT < SRR4302544.1330439/94‑1 (MQ=60)
TGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGATCA < SRR4302544.3819108/94‑1 (MQ=60)
TGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGATCA > SRR4302544.1398651/1‑94 (MQ=60)
TGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGATCAGTG < SRR4302544.2065666/94‑1 (MQ=60)
TGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGATCAGTG < SRR4302544.2779099/94‑1 (MQ=60)
GGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGATCAGTGGGA < SRR4302544.2433775/94‑1 (MQ=60)
CACGCTGAAACCATTCCCTGCCCGCATTCTTGTGTTGCTCCATCCCTGTTTCCACCCCCCAACGGGTGCCGATCTCACTAATGATCAGTGGGAT < SRR4302544.1109553/94‑1 (MQ=50)
GCGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGATCAGTGGGATG < SRR4302544.2455093/94‑1 (MQ=60)
ACGCTGAAAACATTACCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGATCAGTGGGATG < SRR4302544.1596570/94‑1 (MQ=60)
GCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGATCAGTGGGATGCG > SRR4302544.1486339/1‑94 (MQ=60)
TGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGATCCGTGGGATGCGGT > SRR4302544.3481384/1‑94 (MQ=60)
TGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGATCAGTGGGATGCGGT > SRR4302544.2377234/1‑94 (MQ=60)
GAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGATCAGTGGGATGCGGTG > SRR4302544.3305527/1‑94 (MQ=60)
AAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGATCAGTGGGATGCGGTGAT > SRR4302544.373895/1‑94 (MQ=60)
AAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGATCAGTGGGATGCGGTGAT < SRR4302544.902009/94‑1 (MQ=60)
AAACATTGCCTGCCCGCAGGATTGTGTTGCTGCATCAAGGTTGCCGCAACCCAACGGGTGCCGATCTCACTAATGATCAGTGGGATGCGGTGAT < SRR4302544.2374757/94‑1 (MQ=60)
AACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGATCAGTGGGATGCGGTGATT < SRR4302544.989966/94‑1 (MQ=60)
ACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGATCAGTGGGATGCGGTGATTG < SRR4302544.446002/94‑1 (MQ=60)
ACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGATCAGTGGGATGCGGTGATTG > SRR4302544.3161105/1‑94 (MQ=60)
CATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGGTCTCACTAATGATCAGTGGGATGCGGTGATTGA > SRR4302544.3319031/1‑94 (MQ=60)
CATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGATCAGTGGGATGCGGTGATTGA < SRR4302544.2990450/94‑1 (MQ=60)
ATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACCACCCAACGGGTGCCGATCTCACTAATGATCCGTGGGATGCGGTGATTGAA > SRR4302544.3945714/1‑94 (MQ=60)
TTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGATCAGTGGGATGCGGTGATTGAAA > SRR4302544.2475665/1‑94 (MQ=60)
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CGGGGCTGGATTCGAAGTGAGTACTTACCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTACCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGATCAGTGGGATGCGGTGATTGAAA > NC_000913/4265109‑4265293
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
