Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1475	266.7	13469680	98.2%	13227225	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,265,202	A→G	L170L (TTA→TTG)	tyrB →	tyrosine aminotransferase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,265,202	0	A	G	100.0%	790.6 / NA	243	L170L (TTA→TTG)	tyrB	tyrosine aminotransferase
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (128/115); total (128/115)

Only 100 of 255 total aligned reads displayed.

GGCTGGATTCGAAGTGAGTACTTACCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTACCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGATCAGTGGGATGCGGTGATTGA  >  NC_000913/4265112‑4265291

 gCTGGATTCGAAGTGAGTACTTACCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCt                                                                                        <  2:4210495/93‑1 (MQ=255)

 gCTGGATACGAAGTGAGTACTTACCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCt                                                                                        <  1:6725160/93‑1 (MQ=255)

    ggATTCGAAGTGAGTACTTACCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATtgcctgcc                                                                                     >  1:497840/1‑93 (MQ=255)

    ggATTCGAAGTGAGTACTTACCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATtgcctgcc                                                                                     >  1:5230389/1‑93 (MQ=255)

    ggATTCGAAGTGAGTACTTACCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATtgcctgcc                                                                                     >  2:251485/1‑93 (MQ=255)

    ggATTCGAAGTGAGTACTTACCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATtgcctgcc                                                                                     >  1:6397392/1‑93 (MQ=255)

    ggATTCGAAGTGAGTACTTACCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATtgcctgcc                                                                                     >  2:1176777/1‑93 (MQ=255)

     gATTCGAAGTGAGTACTTACCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGccc                                                                                    <  2:476976/93‑1 (MQ=255)

     gATTCGAAGTGAGTACTTACCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGccc                                                                                    >  2:4594519/1‑93 (MQ=255)

     gATTCGAAGTGAGTACTTACCCCTGGTATGACGAAGCAACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGccc                                                                                    <  1:2087583/93‑1 (MQ=255)

      aTTCGAAGTGAGTACTTACCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCg                                                                                   <  1:604370/93‑1 (MQ=255)

       ttCGAAGTGAGTACTTACCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGc                                                                                  >  2:4492499/1‑93 (MQ=255)

        tCGAAGTGAGTACTTACCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCa                                                                                 <  2:6625302/93‑1 (MQ=255)

          gAAGTGAGTACTTACCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGt                                                                               >  1:1912253/1‑93 (MQ=255)

          gAAGTGAGTACTTACCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGt                                                                               <  1:3362976/93‑1 (MQ=255)

           aaGTGAGTACTTACCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTa                                                                              >  2:5879301/1‑93 (MQ=255)

           aaGTGAGTACTTACCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTa                                                                              >  2:1699404/1‑93 (MQ=255)

              tGAGTACTTACCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGATCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATtg                                                                           <  1:5436360/93‑1 (MQ=255)

                 gTACTTACCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTgtgt                                                                        <  2:5734028/93‑1 (MQ=255)

                  tACTTACCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGtt                                                                       <  2:2888803/93‑1 (MQ=255)

                   aCTTACCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTtg                                                                      <  1:2625/93‑1 (MQ=255)

                    cTTACCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTtgc                                                                     <  2:2982219/93‑1 (MQ=255)

                     ttACCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTtgct                                                                    >  1:3276493/1‑93 (MQ=255)

                        ccccTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCa                                                                 <  2:3286335/93‑1 (MQ=255)

                         cccTGGTAGGACGAAGCGATTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCAt                                                                >  1:6555357/1‑93 (MQ=255)

                          ccTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATc                                                               <  1:4615030/93‑1 (MQ=255)

                           cTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATcc                                                              >  2:5367669/1‑93 (MQ=255)

                           cTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATcc                                                              >  1:6261916/1‑93 (MQ=255)

                           cTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATcc                                                              >  2:4382764/1‑93 (MQ=255)

                            tGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCa                                                             <  1:416187/93‑1 (MQ=255)

                            tGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCa                                                             <  1:3798208/93‑1 (MQ=255)

                            tGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCa                                                             <  1:4767258/93‑1 (MQ=255)

                             ggTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCAt                                                            >  2:4837092/1‑93 (MQ=255)

                               tATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGt                                                          <  2:3490516/93‑1 (MQ=255)

                               tATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGt                                                          <  1:1099098/93‑1 (MQ=255)

                                aTGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGtt                                                         <  2:3448670/93‑1 (MQ=255)

                                aTGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGtt                                                         <  1:5865071/93‑1 (MQ=255)

                                aTGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGtt                                                         >  2:5169651/1‑93 (MQ=255)

                                   aCGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGcc                                                      >  1:1831206/1‑93 (MQ=255)

                                   aCGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGcc                                                      >  1:3044036/1‑93 (MQ=255)

                                       aGCTACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCATaa                                                  >  1:2728987/1‑93 (MQ=255)

                                       aGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACaa                                                  >  1:1501523/1‑93 (MQ=255)

                                        gCGACTAACGGCGTCCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAAc                                                 <  1:2467730/93‑1 (MQ=255)

                                          gACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAAccc                                               <  2:5890656/93‑1 (MQ=255)

                                          gACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAAccc                                               >  2:380921/1‑93 (MQ=255)

                                          gACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAAccc                                               <  2:2564187/93‑1 (MQ=255)

                                           aCTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCa                                              >  2:6369575/1‑93 (MQ=255)

                                           aCTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCa                                              >  2:6307302/1‑93 (MQ=255)

                                           aCTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCa                                              >  1:742878/1‑93 (MQ=255)

                                           aCTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCa                                              >  1:593278/1‑93 (MQ=255)

                                            cTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCaa                                             <  2:4067618/93‑1 (MQ=255)

                                              aaCGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACg                                           >  2:186528/1‑93 (MQ=255)

                                              aaCGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACg                                           >  2:3051011/1‑93 (MQ=255)

                                               aCGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACgg                                          >  1:1188783/1‑93 (MQ=255)

                                               aCGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACgg                                          >  1:2247913/1‑93 (MQ=255)

                                                cGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACggg                                         >  1:4002364/1‑93 (MQ=255)

                                                cGGCGTGCGCTTTAATGACCTGCTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACggg                                         <  2:6509432/93‑1 (MQ=255)

                                                   cGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGc                                      >  2:1298497/1‑93 (MQ=255)

                                                    gTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATGCATGTTGCCACAACCCAACGGGTGcc                                     <  2:2078040/93‑1 (MQ=255)

                                                    gTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGcc                                     <  2:3183817/93‑1 (MQ=255)

                                                    gTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGcc                                     <  1:6144162/93‑1 (MQ=255)

                                                    gTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGcc                                     <  1:5636872/93‑1 (MQ=255)

                                                      gcgcTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGa                                   >  2:3120032/1‑93 (MQ=255)

                                                               tGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACCACCCAACGGGTGCCGATCTCACTaa                          <  2:730654/93‑1 (MQ=255)

                                                               tGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTaa                          <  1:492820/93‑1 (MQ=255)

                                                                gACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAAt                         >  2:153154/1‑93 (MQ=255)

                                                                gACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAAt                         <  1:4282438/93‑1 (MQ=255)

                                                                  ccTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGa                       >  1:3746467/1‑93 (MQ=255)

                                                                   cTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGAt                      <  2:4982687/93‑1 (MQ=255)

                                                                   cTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGAt                      >  1:2096991/1‑93 (MQ=255)

                                                                   cTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGAt                      >  2:2835058/1‑93 (MQ=255)

                                                                    tGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGATc                     >  2:1216256/1‑93 (MQ=255)

                                                                        ggCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGATCAGTg                 <  1:4325765/93‑1 (MQ=255)

                                                                         gCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGATCAGTgg                <  2:1743333/93‑1 (MQ=255)

                                                                         gCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGATCAGTgg                <  2:6593775/93‑1 (MQ=255)

                                                                           gACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGATCAGTGGGa              <  1:1586710/93‑1 (MQ=255)

                                                                            aCGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGATCAGTGGGAt             <  2:2374540/93‑1 (MQ=255)

                                                                            aCGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGAGCAGTGGGAt             <  1:894874/93‑1 (MQ=255)

                                                                              gCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGATCAGTGGGATGc           <  1:4461228/93‑1 (MQ=255)

                                                                              gCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGATCAGTGGGATGc           >  2:6105635/1‑93 (MQ=255)

                                                                               cTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGATCAGTGGGATGCg          >  1:385977/1‑93 (MQ=255)

                                                                                tGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGATCAGTGGGATGCgg         >  2:1109519/1‑93 (MQ=255)

                                                                                tGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGATCAGTGGGATGCgg         >  2:2425317/1‑93 (MQ=255)

                                                                                tGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGATCAGTGGGATGCgg         >  1:14358/1‑93 (MQ=255)

                                                                                tGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGATCAGTGGGATGCgg         >  1:1677382/1‑93 (MQ=255)

                                                                                tGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGATCAGTGGGATGCgg         >  1:4733133/1‑93 (MQ=255)

                                                                                 gAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGATCAGTGGGATGCGGt        >  2:742027/1‑93 (MQ=255)

                                                                                  aaaaCATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGATCAGTGGGATGCGGTg       >  2:912026/1‑93 (MQ=255)

                                                                                  aaaaCATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGATCAGTGGGATGCGGTg       >  2:6554305/1‑93 (MQ=255)

                                                                                  aaaaCATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGATCAGTGGGATGCGGTg       <  1:2386631/93‑1 (MQ=255)

                                                                                  aaaaCATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGATCAGTGGGATGCGGTg       >  2:1577953/1‑93 (MQ=255)

                                                                                    aaCATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGATCAGTGGGATGCGGTGAt     <  1:3440227/93‑1 (MQ=255)

                                                                                    aaCATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGCTGCCACAACCCAACGGGTGCCGATCTCACTAATGATCAGTGGGATGAGGAGAt     >  1:800700/1‑93 (MQ=255)

                                                                                     aCATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGATCAGTGGGATGCGGTGAtt    >  1:4386730/1‑93 (MQ=255)

                                                                                     aCATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGATCAGTGGGATGCGGTGAtt    <  2:3747429/93‑1 (MQ=255)

                                                                                     aCATTGCCTGCCCGCAGTATAGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGATCAGTGGGATGCGGTGAtt    >  1:6452416/1‑93 (MQ=255)

                                                                                      cATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGATCAGTGGGATGCGGTGATTg   <  1:2872659/93‑1 (MQ=255)

                                                                                      cATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGATCAGTGGGATGCGGTGATTg   >  2:5511463/1‑93 (MQ=255)

                                                                                       aTTGCCTGCCCGCAGTATTGTGTTGCTGCATGCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGATCAGTGGGATGCGGTGATTGa  <  2:5688806/93‑1 (MQ=255)

                                                                                       aTTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGATCAGTGGGATGCGGTGATTGa  >  1:2201208/1‑93 (MQ=255)

GGCTGGATTCGAAGTGAGTACTTACCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTACCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGATCAGTGGGATGCGGTGATTGA  >  NC_000913/4265112‑4265291

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CGGGGCTGGATTCGAAGTGAGTACTTACCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTACCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGATCAGTGGGATGCGGTGATTGAAAT  >  NC_000913/4265109‑4265294

CGGGGCTGGATTCGAAGTGAGTACTTACCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTG                                                                                              <  SRR4302536.3236557/94‑1 (MQ=60)

  GGGCTGGATTCGAAGTGAGTACTTACCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCC                                                                                            <  SRR4302536.5292553/94‑1 (MQ=60)

    GCTGGATTCGAAGTGAGTACTTACCCCTGTATTGACGAAGGGACTAACGGCTTGCGCTTTAATGCCCTGTTGGGGACGTTGAAACCATTGCCTG                                                                                          >  SRR4302536.704084/1‑94 (MQ=42)

    GCTGGATTCGAAGTGAGTACTTACCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTG                                                                                          <  SRR4302536.5075670/94‑1 (MQ=60)

    GCTGGATACGAAGTGAGTACTTACCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTG                                                                                          <  SRR4302536.6924922/94‑1 (MQ=60)

     CTGGATTCGAAGTGAGTACTTACCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGC                                                                                         >  SRR4302536.483284/1‑94 (MQ=60)

      TGGATTCGAAGTGAGTACTTACCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCC                                                                                        >  SRR4302536.6588309/1‑94 (MQ=60)

      TGGATTCGAAGTGAGTACTTACCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCC                                                                                        >  SRR4302536.5386232/1‑94 (MQ=60)

      TGGATTCGAAGTGAGTACTTACCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCC                                                                                        >  SRR4302536.510686/1‑94 (MQ=60)

       GGATTCGAAGTGAGTACTTACCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCC                                                                                       <  SRR4302536.1921964/94‑1 (MQ=60)

       GGATTCGAAGTGAGTACTTACCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCC                                                                                       <  SRR4302536.2796551/94‑1 (MQ=60)

       GGATTCGAAGTGAGTACTTACCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCC                                                                                       <  SRR4302536.3515665/94‑1 (MQ=60)

        GATTCGAAGTGAGTACTTACCCCTGGTATGACGAAGCAACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCG                                                                                      <  SRR4302536.2150417/94‑1 (MQ=60)

         ATTCGAAGTGAGTACTTACCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGC                                                                                     >  SRR4302536.4908739/1‑94 (MQ=60)

         ATTCGAAGTGAGTACTTACCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGC                                                                                     <  SRR4302536.622264/94‑1 (MQ=60)

         ATTCGAAGTGAGTACTTACCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGC                                                                                     <  SRR4302536.2152892/94‑1 (MQ=60)

           TCGAAGTGAGTACTTACCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAACACATTGCCTGCCCGCAG                                                                                   >  SRR4302536.3974198/1‑94 (MQ=60)

           TCGAAGTGAGTACTTACCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAG                                                                                   >  SRR4302536.4827040/1‑94 (MQ=60)

           TCGAAGTGAGTACTTACCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAG                                                                                   <  SRR4302536.739620/94‑1 (MQ=60)

            CGAAGTGAGTACTTACCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGT                                                                                  >  SRR4302536.1969786/1‑94 (MQ=60)

            CGAAGTGAGTACTTACCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGT                                                                                  <  SRR4302536.155433/94‑1 (MQ=60)

            CGAAGTGAGTACTTACCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGT                                                                                  >  SRR4302536.3862154/1‑94 (MQ=60)

            CGAAGTGAGTACTTACCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGT                                                                                  >  SRR4302536.5657152/1‑94 (MQ=60)

             GAAGTGAGTACTTACCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTA                                                                                 <  SRR4302536.3462849/94‑1 (MQ=60)

             GAAGTGAGTACTTACCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTA                                                                                 >  SRR4302536.628506/1‑94 (MQ=60)

              AAGTGAGTACTTACCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGACAACATTGCCTGCCCGCAGTAT                                                                                >  SRR4302536.789026/1‑94 (MQ=60)

              AAGTGAGTACTTACCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTAT                                                                                <  SRR4302536.3248031/94‑1 (MQ=60)

              AAGTGAGTACTTACCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTAT                                                                                <  SRR4302536.1453010/94‑1 (MQ=60)

              AAGTGAGTACTTACCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTAT                                                                                >  SRR4302536.1989757/1‑94 (MQ=60)

              AAGTGAGTACTTACCCCTGGTATGACGAAGCGACTAACGGCGCGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTAT                                                                                >  SRR4302536.2998899/1‑94 (MQ=60)

               AGTGAGTACTTACCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATT                                                                               >  SRR4302536.2539644/1‑94 (MQ=60)

               AGTGAGTACTTACCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATT                                                                               <  SRR4302536.4690745/94‑1 (MQ=60)

                GTGAGTACTTACCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTG                                                                              <  SRR4302536.2285784/94‑1 (MQ=60)

                 TGAGTACTTACCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGATCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGT                                                                             <  SRR4302536.5598923/94‑1 (MQ=60)

                  GAGTACTTACCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTG                                                                            <  SRR4302536.5106871/94‑1 (MQ=60)

                    GTACTTACCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTT                                                                          >  SRR4302536.6187519/1‑94 (MQ=60)

                     TACTTACCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTG                                                                         <  SRR4302536.3870055/94‑1 (MQ=60)

                      ACTTACCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGC                                                                        <  SRR4302536.2699/94‑1 (MQ=60)

                       CTTACCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCT                                                                       >  SRR4302536.3372782/1‑94 (MQ=60)

                         TACCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGC                                                                     >  SRR4302536.2645647/1‑94 (MQ=60)

                          ACCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCA                                                                    <  SRR4302536.3995072/94‑1 (MQ=60)

                          ACCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCA                                                                    >  SRR4302536.2939374/1‑94 (MQ=60)

                           CCCCTGGTAGGACGAAGCGATTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCAT                                                                   >  SRR4302536.6750547/1‑94 (MQ=60)

                             CCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCC                                                                 <  SRR4302536.4753657/94‑1 (MQ=60)

                             CCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCC                                                                 >  SRR4302536.6448467/1‑94 (MQ=60)

                              CTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCA                                                                <  SRR4302536.6857886/94‑1 (MQ=60)

                               TGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCAT                                                               <  SRR4302536.3911489/94‑1 (MQ=60)

                               TGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCAT                                                               <  SRR4302536.427161/94‑1 (MQ=60)

                               TGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCAT                                                               <  SRR4302536.4910828/94‑1 (MQ=60)

                                GGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATT                                                              >  SRR4302536.4292737/1‑94 (MQ=60)

                                 GTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGT                                                             >  SRR4302536.1245900/1‑94 (MQ=60)

                                  TATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTT                                                            <  SRR4302536.1132064/94‑1 (MQ=60)

                                  TATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTT                                                            <  SRR4302536.671013/94‑1 (MQ=60)

                                   ATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTG                                                           <  SRR4302536.6039831/94‑1 (MQ=60)

                                    TGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGC                                                          >  SRR4302536.783257/1‑94 (MQ=60)

                                    TGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGC                                                          >  SRR4302536.5151463/1‑94 (MQ=60)

                                     GACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCC                                                         >  SRR4302536.3133502/1‑94 (MQ=60)

                                     GACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCC                                                         >  SRR4302536.1886412/1‑94 (MQ=60)

                                      ACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCA                                                        <  SRR4302536.851221/94‑1 (MQ=60)

                                      ACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCA                                                        <  SRR4302536.4423937/94‑1 (MQ=60)

                                       CGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGGCAC                                                       >  SRR4302536.1803903/1‑94 (MQ=60)

                                       CGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCAC                                                       <  SRR4302536.6122358/94‑1 (MQ=60)

                                       CGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCAC                                                       <  SRR4302536.964002/94‑1 (MQ=60)

                                         AAGCTACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCATAA                                                     >  SRR4302536.2810345/1‑94 (MQ=60)

                                         AAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAA                                                     >  SRR4302536.6356614/1‑94 (MQ=60)

                                         AAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAA                                                     >  SRR4302536.1545805/1‑94 (MQ=60)

                                          AGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAAC                                                    >  SRR4302536.5301562/1‑94 (MQ=60)

                                           GCGACTAACGGCGTCCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACC                                                   <  SRR4302536.2542231/94‑1 (MQ=60)

                                             GACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCA                                                 <  SRR4302536.5807065/94‑1 (MQ=60)

                                             GACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCA                                                 >  SRR4302536.4252206/1‑94 (MQ=60)

                                             GACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCA                                                 >  SRR4302536.609315/1‑94 (MQ=60)

                                             GACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCA                                                 >  SRR4302536.764680/1‑94 (MQ=60)

                                             GACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCA                                                 >  SRR4302536.155952/1‑94 (MQ=60)

                                              ACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAA                                                >  SRR4302536.5634071/1‑94 (MQ=60)

                                              ACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAA                                                <  SRR4302536.6380018/94‑1 (MQ=60)

                                              ACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAA                                                <  SRR4302536.4494223/94‑1 (MQ=60)

                                                TAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACG                                              >  SRR4302536.1996157/1‑94 (MQ=60)

                                                 AACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGG                                             <  SRR4302536.2225609/94‑1 (MQ=60)

                                                 AACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGG                                             >  SRR4302536.923380/1‑94 (MQ=60)

                                                 AACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGG                                             >  SRR4302536.2315956/1‑94 (MQ=60)

                                                 AACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGG                                             >  SRR4302536.1224532/1‑94 (MQ=60)

                                                 AACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCGGCATCCATGTTGCCACAACCCAACGG                                             <  SRR4302536.4372137/94‑1 (MQ=60)

                                                  ACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGG                                            >  SRR4302536.4121126/1‑94 (MQ=60)

                                                  ACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGG                                            >  SRR4302536.1725587/1‑94 (MQ=60)

                                                      CGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCG                                        >  SRR4302536.4492395/1‑94 (MQ=60)

                                                       GTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCG                                       <  SRR4302536.6327231/94‑1 (MQ=60)

                                                       GTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCG                                       <  SRR4302536.6826389/94‑1 (MQ=60)

                                                       GTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCG                                       <  SRR4302536.5804332/94‑1 (MQ=60)

                                                            CTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTC                                  >  SRR4302536.6621828/1‑94 (MQ=60)

                                                             TTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCA                                 <  SRR4302536.3828243/94‑1 (MQ=60)

                                                               TAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACT                               <  SRR4302536.3398946/94‑1 (MQ=60)

                                                                AATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCCACGGGTGCCGATCTCACTA                              >  SRR4302536.4101846/1‑94 (MQ=60)

                                                                 GTGACCTGTTGGCGACGCTGAAAACATTGCCCGCCCGCAGTAATGTGTTGCTGCATCCATGTTGCCACAACCCAACAGGCGACGATCTTACTAA                             >  SRR4302536.2466513/1‑94 (MQ=60)

                                                                  TGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAAT                            <  SRR4302536.505572/94‑1 (MQ=60)

                                                                   GACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATG                           <  SRR4302536.4410266/94‑1 (MQ=60)

                                                                   GACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATG                           <  SRR4302536.2187477/94‑1 (MQ=60)

                                                                    ACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGA                          >  SRR4302536.3858459/1‑94 (MQ=60)

                                                                     CCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGAT                         >  SRR4302536.2160065/1‑94 (MQ=60)

                                                                      CTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACT‑ATGATCA                       <  SRR4302536.118329/94‑1 (MQ=60)

                                                                       TGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGATCA                       <  SRR4302536.6570641/94‑1 (MQ=60)

                                                                           GGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGATCAGTGG                   <  SRR4302536.2370803/94‑1 (MQ=60)

                                                                           GGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGATCAGTGG                   <  SRR4302536.4455294/94‑1 (MQ=60)

                                                                            GCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGATCAGTGGG                  <  SRR4302536.2501956/94‑1 (MQ=60)

                                                                             CGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGATCAGTGGGA                 >  SRR4302536.1019902/1‑94 (MQ=60)

                                                                             CGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGATCAGTGGGA                 <  SRR4302536.460104/94‑1 (MQ=60)

                                                                             CGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCAACAACCCAACGGGTGCCGATCTCACTAATGATCAGTGGGA                 >  SRR4302536.1801182/1‑94 (MQ=60)

                                                                              GACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGATCAGTGGGAT                <  SRR4302536.1633145/94‑1 (MQ=60)

                                                                               ACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCCTCCATGTTGCCACAACCCAACGGGGGCCGATCTCACTAATGATCAGTGGGATG               >  SRR4302536.1532911/1‑94 (MQ=60)

                                                                               ACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGATCAGTGGGATG               >  SRR4302536.5509308/1‑94 (MQ=60)

                                                                               ACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGAGCAGTGGGATG               <  SRR4302536.921235/94‑1 (MQ=60)

                                                                                 GCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGATCAGTGGGATGCG             <  SRR4302536.2986956/94‑1 (MQ=60)

                                                                                 GCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGATCAGTGGGATGCG             <  SRR4302536.3403550/94‑1 (MQ=60)

                                                                                 GCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGATCAGTGGGATGCG             >  SRR4302536.396162/1‑94 (MQ=60)

                                                                                 GCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGATCAGTGGGATGCG             <  SRR4302536.4595285/94‑1 (MQ=60)

                                                                                  CTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGATCAGTGGGATGCGG            >  SRR4302536.4875579/1‑94 (MQ=60)

                                                                                  CTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGATCAGTGGGATGCGG            >  SRR4302536.2760330/1‑94 (MQ=60)

                                                                                  CTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGATCAGTGGGATGCGG            >  SRR4302536.6076514/1‑94 (MQ=60)

                                                                                  CTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGATCAGTGGGATGCGG            >  SRR4302536.14773/1‑94 (MQ=60)

                                                                                  CTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGATCAGTGGGATGCGG            >  SRR4302536.1726010/1‑94 (MQ=60)

                                                                                   TGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGATCAGTGGGATGCCGT           >  SRR4302536.2291548/1‑94 (MQ=60)

                                                                                   TAAAACCATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTCCCACAACCCATCGGGTGCCGATCTCACTAATGATCAGTGGGATGCGGT           <  SRR4302536.4928135/94‑1 (MQ=60)

                                                                                    GAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGATCAGTGGGATGCGGTG          <  SRR4302536.4534795/94‑1 (MQ=60)

                                                                                     AAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGATCAGTGGGATGCGGTGA         <  SRR4302536.2458901/94‑1 (MQ=60)

                                                                                     AAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGATCAGTGGGATGCGGTGA         >  SRR4302536.6595377/1‑94 (MQ=60)

                                                                                      AAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGATCAGTGGGATGCGGTGAT        >  SRR4302536.6068556/1‑94 (MQ=60)

                                                                                      AAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGCTGCCACAACCCAACGGGTGCCGATCTCACTAATGATCAGTGGGATGAGGAGAT        >  SRR4302536.824178/1‑94 (MQ=60)

                                                                                       AACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGATCAGTGGGATGCGGTGATT       >  SRR4302536.4517738/1‑94 (MQ=60)

                                                                                       AACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGATCAGTGGGATGCGGTGATC       <  SRR4302536.3542681/94‑1 (MQ=60)

                                                                                       AACATTGCCTGCCCGCAGTATAGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGATCAGTGGGATGCGGTGATT       >  SRR4302536.6645126/1‑94 (MQ=60)

                                                                                         CATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGATCAGTGGGATGCGGTGATTGA     >  SRR4302536.3472308/1‑94 (MQ=60)

                                                                                         CATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGATCAGTGGGATGCGGTGATTGA     >  SRR4302536.2267659/1‑94 (MQ=60)

                                                                                         CATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGATCAGTGGGATGCGGTGATTGA     <  SRR4302536.2957478/94‑1 (MQ=60)

                                                                                          ATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGATCAGTGGGATGCGGTGATTGAA    >  SRR4302536.2489494/1‑94 (MQ=60)

                                                                                           TTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGATCAGTGGGATGCGGTGATTGAAA   >  SRR4302536.2485362/1‑94 (MQ=60)

                                                                                            TGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGATCAGTGGGATGCGGTGATTGAAAT  <  SRR4302536.75324/94‑1 (MQ=60)

CGGGGCTGGATTCGAAGTGAGTACTTACCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTACCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGATCAGTGGGATGCGGTGATTGAAAT  >  NC_000913/4265109‑4265294

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 7 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`