Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1475	266.7	13469680	98.2%	13227225	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,729,644	T→C	M845T (ATG→ACG)	lhr →	Lhr

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,729,644	0	T	C	100.0%	798.2 / NA	242	M845T (ATG→ACG)	lhr	Lhr
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (130/112); total (130/112)

Only 100 of 249 total aligned reads displayed.

TCAGGGATATCCGGATTTTCCGGTCATTCTCGAAACCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGATGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTCGCCTTTCGCCACAAGTTTATTGTTCGGCTATG  >  NC_000913/1729555‑1729733

 cAGGGATATCCGGATTTTCCGGTCATTCTCGAAACCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGt                                                                                       >  2:3332567/1‑93 (MQ=255)

           cGGATTTTCCGGTCATTCTCGAAACCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACg                                                                             <  2:4844720/93‑1 (MQ=255)

             gATTTTCCGGTCATTCTCGAAACCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGt                                                                           <  1:1034329/93‑1 (MQ=255)

             gATTTTCCGGTCATTCTCGAAACCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGt                                                                           <  1:340738/93‑1 (MQ=255)

             gATTTTCCGGTCATTCTCGAAACCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGt                                                                           <  2:4640707/93‑1 (MQ=255)

              aTTTTCCGGTCATTCTCGAAACCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTg                                                                          <  1:461850/93‑1 (MQ=255)

              aTTTTCCGGTCATTCTCGAAACCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTg                                                                          >  1:4275983/1‑93 (MQ=255)

               ttttCCGGTCATTCTCGAAACCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTgg                                                                         <  2:5498646/93‑1 (MQ=255)

               ttttCCGGTCATTCTCGAAACCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTgg                                                                         >  2:2578926/1‑93 (MQ=255)

               ttttCCGGTCATTCTCGAAACCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTgg                                                                         <  2:4362719/93‑1 (MQ=255)

               ttttCCGGTCATTCTCGAAACCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTgg                                                                         >  1:4412277/1‑93 (MQ=255)

                tttCCGGTCATTCTCGAAACCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGc                                                                        <  2:63018/93‑1 (MQ=255)

                   ccGGTCATTCTCGAAACCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGaa                                                                     >  1:2225640/1‑93 (MQ=255)

                     ggTCATTCTCGAAACCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAAt                                                                   <  1:2509540/93‑1 (MQ=255)

                      gTCATTCTCGAAACCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAAtt                                                                  >  1:3604971/1‑93 (MQ=255)

                       tCATTCTCGAAACCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTc                                                                 <  1:2334591/93‑1 (MQ=255)

                       tCATTCTCGAAACCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTc                                                                 <  2:4318763/93‑1 (MQ=255)

                         aTTCTCGAAACCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCaa                                                               <  2:2785737/93‑1 (MQ=255)

                         aTTCTCGAAACCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCaa                                                               >  2:5787943/1‑93 (MQ=255)

                          ttCTCGAAACCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCaaa                                                              >  2:1292762/1‑93 (MQ=255)

                            ctcGAAGCCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAata                                                            <  2:6162792/93‑1 (MQ=255)

                            ctcGAAACCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAata                                                            <  1:6264934/93‑1 (MQ=255)

                             tcGAAACCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAatat                                                           >  1:5120225/1‑93 (MQ=255)

                               gAAACCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATcc                                                         >  2:1663227/1‑93 (MQ=255)

                                aaaCCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCg                                                        <  1:3091969/93‑1 (MQ=255)

                                aaaCCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCg                                                        >  2:4529945/1‑93 (MQ=255)

                                aaaCCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCg                                                        >  1:1895294/1‑93 (MQ=255)

                                aaaCCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCg                                                        >  1:1408453/1‑93 (MQ=255)

                                 aaCCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGa                                                       >  1:5565855/1‑93 (MQ=255)

                                 aaCCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGa                                                       <  1:5205106/93‑1 (MQ=255)

                                  aCCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGAt                                                      >  2:895545/1‑93 (MQ=255)

                                  aCCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGAt                                                      <  1:4486714/93‑1 (MQ=255)

                                   cccTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATg                                                     >  2:2861002/1‑93 (MQ=255)

                                   cccTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATg                                                     >  1:287918/1‑93 (MQ=255)

                                    ccTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGt                                                    >  2:6703908/1‑93 (MQ=255)

                                    ccTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGt                                                    >  1:164379/1‑93 (MQ=255)

                                     cTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTa                                                   >  2:699090/1‑93 (MQ=255)

                                     cTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTa                                                   >  1:5542371/1‑93 (MQ=255)

                                        cgcgAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACg                                                >  1:3691458/1‑93 (MQ=255)

                                         gcgAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGa                                               <  2:4204974/93‑1 (MQ=255)

                                         gcgAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGa                                               >  1:2001041/1‑93 (MQ=255)

                                          cgAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGAc                                              <  1:3508860/93‑1 (MQ=255)

                                           gAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGAcc                                             >  2:529908/1‑93 (MQ=255)

                                            aaTGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCa                                            >  1:4980444/1‑93 (MQ=255)

                                            aaTGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCa                                            >  1:4213564/1‑93 (MQ=255)

                                             aTGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCAc                                           <  2:4906422/93‑1 (MQ=255)

                                             aTGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCAc                                           <  1:1484432/93‑1 (MQ=255)

                                             aTGTCTGCAAGATGTTTATGATCTTCCCGCACGGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCAc                                           <  2:5124928/93‑1 (MQ=255)

                                              tGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACt                                          >  2:5336113/1‑93 (MQ=255)

                                              tGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACt                                          >  2:1695364/1‑93 (MQ=255)

                                               gTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTa                                         <  2:5939949/93‑1 (MQ=255)

                                               gTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTa                                         >  2:105440/1‑93 (MQ=255)

                                               gTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTa                                         <  2:6587793/93‑1 (MQ=255)

                                               gTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTa                                         >  1:1148756/1‑93 (MQ=255)

                                                tCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTAc                                        >  2:124912/1‑93 (MQ=255)

                                                  tGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGc                                      >  2:3116203/1‑93 (MQ=255)

                                                   gCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGcc                                     >  1:6200068/1‑93 (MQ=255)

                                                     aaGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCt                                   <  1:5817787/93‑1 (MQ=255)

                                                      aGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTc                                  >  1:2500233/1‑93 (MQ=255)

                                                      aGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTc                                  >  2:6088096/1‑93 (MQ=255)

                                                       gATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTCg                                 >  1:5481802/1‑93 (MQ=255)

                                                       gATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTCg                                 >  2:1419179/1‑93 (MQ=255)

                                                        aTGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTCGc                                <  1:886012/93‑1 (MQ=255)

                                                        aTGTTTATGATCTTCCCGCAATGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTCGc                                >  1:6455750/1‑93 (MQ=255)

                                                         tGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTCGcc                               >  2:6431123/1‑93 (MQ=255)

                                                         tGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTCGcc                               >  2:5619071/1‑93 (MQ=255)

                                                         tGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTCGcc                               >  2:4743403/1‑93 (MQ=255)

                                                           tttATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTCGCCtt                             <  1:6021605/93‑1 (MQ=255)

                                                           tttATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTCGCCtt                             >  1:706573/1‑93 (MQ=255)

                                                            ttATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTCGCCttt                            >  2:2953160/1‑93 (MQ=255)

                                                             tATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATTCGATGTAACGACCACTACGCCCTCGCCTTTc                           >  2:2729869/1‑93 (MQ=255)

                                                             tATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTCGCCTTTc                           <  1:3472780/93‑1 (MQ=255)

                                                             tATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTCGCCTTTc                           <  2:5549978/93‑1 (MQ=255)

                                                                gATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTCGCCTTTCGcc                        <  2:3460452/93‑1 (MQ=255)

                                                                gATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTCGCCTTTCGcc                        <  1:5783595/93‑1 (MQ=255)

                                                                gATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTCGCCTTTCGcc                        >  1:3221968/1‑93 (MQ=255)

                                                                 aTCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTCGCCTTTCGCca                       >  1:3724633/1‑93 (MQ=255)

                                                                  tCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTCGCCTTTCGCcac                      >  2:2336250/1‑93 (MQ=255)

                                                                   cTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTCGCCTTTCGCcaca                     >  2:201373/1‑93 (MQ=255)

                                                                    ttCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTCGCCTTTCGCCACaa                    >  2:4333591/1‑93 (MQ=255)

                                                                    ttCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTCGCCTTTCGCCACaa                    >  1:1814807/1‑93 (MQ=255)

                                                                     tCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTCGCCTTTCGCCACAAg                   <  2:2618720/93‑1 (MQ=255)

                                                                      cccGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTCGCCTTTCGCCACAAGt                  >  1:3944411/1‑93 (MQ=255)

                                                                      cccGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTCGCCTTTCGCCACAAGt                  >  1:1523955/1‑93 (MQ=255)

                                                                       ccGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTCGCCTTTCGCCACAAGtt                 <  2:5239601/93‑1 (MQ=255)

                                                                       ccGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTCGCCTTTCGCCACAAGtt                 <  2:3075046/93‑1 (MQ=255)

                                                                       acGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTCGCCTTTCGCCACAAGtt                 >  2:2145167/2‑93 (MQ=255)

                                                                         gCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTCGCCTTTCGCCACAAGTTTa               <  1:640705/93‑1 (MQ=255)

                                                                         gCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTCGCCTTTCGCCACAAGTTTa               >  2:1928165/1‑93 (MQ=255)

                                                                          cACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTCGCCTTTCGCCACAAGTTTAt              <  2:4030516/93‑1 (MQ=255)

                                                                           aCTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTCGCCTTTCGCCAGAAGTTTAtt             >  1:274087/1‑93 (MQ=255)

                                                                           aCTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTCGCCTTTCGCCACAAGTTTAtt             <  1:4029339/93‑1 (MQ=255)

                                                                           aCTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTCGCCTTTCGCCACAAGTTTAtt             <  2:3658180/93‑1 (MQ=255)

                                                                           aCTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTCGCCTTTCGCCACAAGTTTAtt             <  1:6063345/93‑1 (MQ=255)

                                                                            cTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTCGCCTTTCGCCACAAGTTTATTg            >  1:4773813/1‑93 (MQ=255)

                                                                              ggAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTCGCCTTTCGCCACAAGTTTATTGtt          >  2:3539862/1‑93 (MQ=255)

                                                                               gAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTCGCCTTTCGCCACAAGTTTATTGTTc         >  2:5407840/1‑93 (MQ=255)

                                                                                  cGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTCGCCTTTCGCCACAAGTTTATTGTTCGGc      <  2:4074795/93‑1 (MQ=255)

                                                                                    tttGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTCGCCTTTCGCCACAAGTTTATTGTTCGGCTa    <  2:3897872/93‑1 (MQ=255)

                                                                                     ttGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTCGCCTTTCGCCACAAGTTTATTGTTCGGCTAt   <  1:6488258/93‑1 (MQ=255)

TCAGGGATATCCGGATTTTCCGGTCATTCTCGAAACCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGATGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTCGCCTTTCGCCACAAGTTTATTGTTCGGCTATG  >  NC_000913/1729555‑1729733

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 21 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

TCGCTCAGGGATATCCGGATTTTCCGGTCATTCTCGAAACCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGATGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTCGCCTTTCGCCACAAGTTTATTGTTCGGCTATGTCG  >  NC_000913/1729551‑1729736

TCGCTCAGGGATATCCGGATTTTCCGGTCATTCTCGAGACCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGAC                                                                                              <  SRR4302536.5862564/94‑1 (MQ=60)

 CGCTCAGGGATATCCGGATTTTCCGGTCATTCTCGAAACCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACG                                                                                             <  SRR4302536.6187427/94‑1 (MQ=60)

 CGCTCAGGGATATCCGGATTTTCCGGTCATTCTCGAAACCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACG                                                                                             <  SRR4302536.6424674/94‑1 (MQ=60)

      AGGGATATCCGGATTTTCCGGTCATTCTCGAAACCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCTCGCACTGGAACGTTTGACGCGTCG                                                                                        >  SRR4302536.5345604/1‑94 (MQ=60)

      AGGGATATCCGGATTTTCCGGTCATTCTCGAAACCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCG                                                                                        <  SRR4302536.3832078/94‑1 (MQ=60)

           TATCCGGATTTTCCGGTCATTCTCGAAACCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGA                                                                                   <  SRR4302536.5717628/94‑1 (MQ=60)

             TCCGGATTTTCCGGTCATTCTCGAAACCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAAC                                                                                 <  SRR4302536.3467460/94‑1 (MQ=60)

                GGATTTTCCGGTCATTCTCGAAACCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGT                                                                              <  SRR4302536.1305460/94‑1 (MQ=60)

                 GATTTTCCGGTCATTCTCGAAACCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTG                                                                             <  SRR4302536.1064994/94‑1 (MQ=60)

                 GATTTTCCGGTCATTCTCGAAACCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTG                                                                             >  SRR4302536.4403441/1‑94 (MQ=60)

                 GATTTTCCGGTCATTCTCGAAACCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTG                                                                             <  SRR4302536.349764/94‑1 (MQ=60)

                  ATTTTCCGGTCATTCTCGAAACCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGG                                                                            <  SRR4302536.3861014/94‑1 (MQ=60)

                  ATTTTCCGGTCATTCTCGAAACCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGG                                                                            >  SRR4302536.4544305/1‑94 (MQ=60)

                  ATTTTCCGGTCATTCTCGAAACCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGG                                                                            <  SRR4302536.473914/94‑1 (MQ=60)

                   TTTTCCGGTCATTCTCGAAACCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGC                                                                           <  SRR4302536.6316148/94‑1 (MQ=60)

                   TTTTCCGGTCATTCTCGAAACCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGC                                                                           >  SRR4302536.2979429/1‑94 (MQ=60)

                     TTCCGGTCATTCTCGAAACCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGA                                                                         >  SRR4302536.3838010/1‑94 (MQ=60)

                      TCCGGTCATTCTCGAAACCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAA                                                                        >  SRR4302536.2292960/1‑94 (MQ=60)

                       CCGGTCATTCTCGAAACCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAA                                                                       >  SRR4302536.3742177/1‑94 (MQ=60)

                       CCGGTCATTCTCGAAACCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAA                                                                       >  SRR4302536.2106084/1‑94 (MQ=60)

                         GGTCATTCTCGAAACCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATT                                                                     >  SRR4302536.3712777/1‑94 (MQ=60)

                         GGTCATTCTCGAAACCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATT                                                                     <  SRR4302536.4392407/94‑1 (MQ=60)

                         GGTCATTCTCGAAACCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATT                                                                     <  SRR4302536.2585213/94‑1 (MQ=60)

                         GGTCATTCTCGAAACCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATT                                                                     >  SRR4302536.2580549/1‑94 (MQ=60)

                         GGTCATTCTCGAAACCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATT                                                                     <  SRR4302536.6192893/94‑1 (MQ=60)

                          GTCATCCTCGAAACCCTACGCGAATGCCTGCAAGATGCTTATGATCCGCCCGGACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTC                                                                    <  SRR4302536.5327198/94‑1 (MQ=60)

                           TCATTCTCGAAACCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCA                                                                   <  SRR4302536.2405432/94‑1 (MQ=60)

                            CATTCTCGAAACCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTAGACGCGTCGCCTGAACGGTGGCGAAATTCAA                                                                  >  SRR4302536.3759370/1‑94 (MQ=60)

                              TTCTCGAAACCCTACGCGAATGTCTGCCAGATTTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAAT                                                                <  SRR4302536.896420/94‑1 (MQ=60)

                              TTCTCGAAACCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAAT                                                                <  SRR4302536.5657133/94‑1 (MQ=60)

                              TTCTCGAAACCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAAT                                                                >  SRR4302536.6350377/1‑94 (MQ=60)

                              TTCTCGAAACCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAAT                                                                <  SRR4302536.6791392/94‑1 (MQ=60)

                               TCTCGAAACCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATA                                                               <  SRR4302536.1540145/94‑1 (MQ=60)

                                CTCGAAACCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATAT                                                              >  SRR4302536.5273214/1‑94 (MQ=60)

                                CTCGAAACCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATAT                                                              <  SRR4302536.6451570/94‑1 (MQ=60)

                                CTCGAAACCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATAT                                                              <  SRR4302536.4710200/94‑1 (MQ=60)

                                CTCGAAACCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATAT                                                              <  SRR4302536.1613997/94‑1 (MQ=60)

                                  CGAAACCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCC                                                            <  SRR4302536.789607/94‑1 (MQ=60)

                                  CGAAACCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCC                                                            <  SRR4302536.5680720/94‑1 (MQ=60)

                                   GAAACCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCG                                                           >  SRR4302536.1450343/1‑94 (MQ=60)

                                   GAAACCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCG                                                           >  SRR4302536.1952345/1‑94 (MQ=60)

                                   GAAACCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCG                                                           >  SRR4302536.2261265/1‑94 (MQ=60)

                                    AAACCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGA                                                          >  SRR4302536.5906254/1‑94 (MQ=60)

                                    AAACCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGA                                                          >  SRR4302536.5731586/1‑94 (MQ=60)

                                    AAACCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGA                                                          >  SRR4302536.405160/1‑94 (MQ=60)

                                    AAACCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGA                                                          <  SRR4302536.3182349/94‑1 (MQ=60)

                                     AACCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGAT                                                         <  SRR4302536.5360263/94‑1 (MQ=60)

                                     AACCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGAT                                                         >  SRR4302536.3200638/1‑94 (MQ=60)

                                      ACCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATG                                                        <  SRR4302536.524838/94‑1 (MQ=60)

                                      ACCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATG                                                        <  SRR4302536.4621454/94‑1 (MQ=60)

                                      ACCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATG                                                        >  SRR4302536.295571/1‑94 (MQ=60)

                                       CCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGT                                                       >  SRR4302536.168659/1‑94 (MQ=60)

                                       CCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGT                                                       >  SRR4302536.6623569/1‑94 (MQ=60)

                                        CCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTA                                                      >  SRR4302536.3609652/1‑94 (MQ=60)

                                        CCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTA                                                      >  SRR4302536.5707529/1‑94 (MQ=60)

                                        CCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTA                                                      <  SRR4302536.2837727/94‑1 (MQ=60)

                                        CCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTA                                                      <  SRR4302536.1597479/94‑1 (MQ=60)

                                           ACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACG                                                   <  SRR4302536.3598840/94‑1 (MQ=60)

                                           ACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACG                                                   >  SRR4302536.3801864/1‑94 (MQ=60)

                                            CGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGA                                                  >  SRR4302536.2061264/1‑94 (MQ=60)

                                            CGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGA                                                  >  SRR4302536.3566724/1‑94 (MQ=60)

                                            CGCGAAGGTCTGCAAGATCTTTATGATCTTCCCGCCCTGGAACGTTTGACGCGTCGCTTGAGCGGTGGCGAAATTCAAATACCCGATGTAACcg                                                  <  SRR4302536.5828288/94‑3 (MQ=60)

                                              CGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACC                                                <  SRR4302536.3613603/94‑1 (MQ=60)

                                              CGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACC                                                <  SRR4302536.1945671/94‑1 (MQ=60)

                                              CGAATGTCTGCAAGATGTTTATGATCTCCCCGCACTGGAACGTTTGACGCGTCCCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACC                                                <  SRR4302536.1952340/94‑1 (MQ=60)

                                               GAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCA                                               >  SRR4302536.5130005/1‑94 (MQ=60)

                                               GAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCA                                               >  SRR4302536.4338849/1‑94 (MQ=60)

                                                CATGTCTGCAAAATGTTTATGATCTCCCCGCACTGGAGCGTGTGACGCGTCTCCTGAGCGGTGGCGAAATTCAAATATCCGATGTAACGACCCC                                              <  SRR4302536.395421/94‑1 (MQ=60)

                                                AATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCAC                                              <  SRR4302536.4441900/94‑1 (MQ=60)

                                                 ATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACT                                             <  SRR4302536.4602382/94‑1 (MQ=60)

                                                 ATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACT                                             <  SRR4302536.4712243/94‑1 (MQ=60)

                                                 ATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACT                                             <  SRR4302536.1528286/94‑1 (MQ=60)

                                                 ATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACT                                             <  SRR4302536.1458603/94‑1 (MQ=60)

                                                  TGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTA                                            >  SRR4302536.1183300/1‑94 (MQ=60)

                                                   ttcggaAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTAC                                           <  SRR4302536.6868334/88‑1 (MQ=60)

                                                      TGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCC                                        >  SRR4302536.6384737/1‑94 (MQ=60)

                                                        CAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGGGAAATTCAAATATCCGATGTAACGACCACTACGCCCT                                      <  SRR4302536.6649910/94‑1 (MQ=60)

                                                        CAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCT                                      >  SRR4302536.1707475/1‑94 (MQ=60)

                                                        CAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCC                                      >  SRR4302536.2551235/1‑94 (MQ=60)

                                                         AAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTC                                     <  SRR4302536.2050121/94‑1 (MQ=60)

                                                         AAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTC                                     <  SRR4302536.5991092/94‑1 (MQ=60)

                                                         AAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTC                                     >  SRR4302536.2575632/1‑94 (MQ=60)

                                                          AGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTCG                                    >  SRR4302536.5645493/1‑94 (MQ=60)

                                                           GATGTTTATGATCTTCCCGCAATGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTCGC                                   >  SRR4302536.6648528/1‑94 (MQ=60)

                                                            ATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTCGCC                                  <  SRR4302536.912083/94‑1 (MQ=60)

                                                            ATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTCGCC                                  >  SRR4302536.297175/1‑94 (MQ=60)

                                                              GTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTCGCCTT                                >  SRR4302536.727232/1‑94 (MQ=60)

                                                              GTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTCGCCTT                                <  SRR4302536.4237772/94‑1 (MQ=60)

                                                               TTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTCGCCTTT                               <  SRR4302536.6201145/94‑1 (MQ=60)

                                                               TTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTCGCCTTT                               <  SRR4302536.6567914/94‑1 (MQ=60)

                                                                 TATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTCGCCTTTCG                             <  SRR4302536.3576296/94‑1 (MQ=60)

                                                                   TGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTCGCCTTTCGCC                           >  SRR4302536.3316446/1‑94 (MQ=60)

                                                                   TGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTCGCCCTTCTCC                           >  SRR4302536.3565646/1‑94 (MQ=60)

                                                                    GATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTCGCCTTTCGCCA                          >  SRR4302536.3835967/1‑94 (MQ=60)

                                                                    GATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTCGCCTTTCGCCA                          <  SRR4302536.5955736/94‑1 (MQ=60)

                                                                     ATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTCGCCTTTCGCCAC                         >  SRR4302536.5434563/1‑94 (MQ=60)

                                                                       CTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTCGCCTTTCGCCACAA                       >  SRR4302536.1869559/1‑94 (MQ=60)

                                                                        TTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTCGCCTTTCGCCACAAG                      <  SRR4302536.2818564/94‑1 (MQ=60)

                                                                         TCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTCGCCTTTCGCCACAAGT                     >  SRR4302536.657176/1‑94 (MQ=60)

                                                                         TCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTCGCCTTTCGCCACAAGT                     >  SRR4302536.1568803/1‑94 (MQ=60)

                                                                         TCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTCGCCTTTCGCCACAAGT                     >  SRR4302536.4061597/1‑94 (MQ=60)

                                                                           CCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTCGCCTTTCGCCACAAGTTT                   <  SRR4302536.585496/94‑1 (MQ=60)

                                                                           CCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTCGCCTTTCGCCACAAGTTT                   >  SRR4302536.6388273/1‑94 (MQ=60)

                                                                            CGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTCGCCTTTCGCCACAAGTTTA                  >  SRR4302536.6012060/1‑94 (MQ=60)

                                                                             GCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTCGCCTTTCGCCACAAGTTTAT                 <  SRR4302536.659602/94‑1 (MQ=60)

                                                                             GCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTCGCCTTTCGCCACAAGTTTAT                 <  SRR4302536.241535/94‑1 (MQ=60)

                                                                              CACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTCGCCTTTCGCCAGAAGTTTATT                >  SRR4302536.281377/1‑94 (MQ=60)

                                                                              CACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTCGCCTTTCGCCACAAGTTTATT                <  SRR4302536.968016/94‑1 (MQ=60)

                                                                              CACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTCGCCTTTCGCCACAAGTTTATT                <  SRR4302536.1477933/94‑1 (MQ=60)

                                                                              CACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTCGCCTTTCGCCACAAGTTTATT                >  SRR4302536.2332973/1‑94 (MQ=60)

                                                                              CACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTCGCCTTTCGCCACAAGTTTATT                >  SRR4302536.3645943/1‑94 (MQ=60)

                                                                              CACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTCGCCTTTCGCCACAAGTTTATT                >  SRR4302536.4891264/1‑94 (MQ=60)

                                                                              CACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTCGACTTTCCCCACAAGTTTATT                >  SRR4302536.4172292/1‑94 (MQ=60)

                                                                               ACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTCGCCTTTCGCCACAAGTTTATTG               <  SRR4302536.1121862/94‑1 (MQ=60)

                                                                               ACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTCGCCTTTCGCCACAAGTTTATTG               <  SRR4302536.6244231/94‑1 (MQ=60)

                                                                               ACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTCGCCTTTCGCCACAAGTTTATTG               <  SRR4302536.4148848/94‑1 (MQ=60)

                                                                               ACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTCGCCTTTCGCCACAAGTTTATTG               >  SRR4302536.4917564/1‑94 (MQ=60)

                                                                                CTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTCGCCTTTCGCCACAAGTTTATTGT              <  SRR4302536.3379204/94‑1 (MQ=60)

                                                                                CTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTCGCCTTTCGCCACAAGTTTATTGT              >  SRR4302536.2736100/1‑94 (MQ=60)

                                                                                 TGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTCGCCTTTCGCCACAAGTTTATTGTT             >  SRR4302536.4485445/1‑94 (MQ=60)

                                                                                 TGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACAACGCCCcgccttttcccaacaggttttttttc             >  SRR4302536.5058230/1‑68 (MQ=60)

                                                                                    AACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTCGCCTTTCGCCACAAGTTTATTGTTCGG          <  SRR4302536.5339603/94‑1 (MQ=60)

                                                                                     ACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTCGCCTTTCGCCACAAGTTTATTGTTCGGC         <  SRR4302536.5990511/94‑1 (MQ=60)

                                                                                      CGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTCGCCTTTCGCCACAAGTTTATTGTTCGGCT        >  SRR4302536.6671714/1‑94 (MQ=60)

                                                                                      CGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTCGCCTTTCGCCACAAGTTTATTGTTCGGCT        >  SRR4302536.5069037/1‑94 (MQ=60)

                                                                                       GTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTCGCCTTTCGCCACAAGTTTATTGTTCGGCTA       >  SRR4302536.5028798/1‑94 (MQ=60)

                                                                                         TTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTCGCCTTTCGCCACAAGTTTATTGTTCGGCTATG     <  SRR4302536.6681747/94‑1 (MQ=60)

                                                                                         TTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTCGCCTTTCGCCACAAGTTTATTGTTCGGCTATG     <  SRR4302536.6205716/94‑1 (MQ=60)

                                                                                          TGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTCGCCTTTCGCCACAAGTTTATTGTTCGGCTATGT    >  SRR4302536.709551/1‑94 (MQ=60)

                                                                                            ACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTCGCCTTTCGCCACAAGTTTATTGTTCGGCTATGTCG  <  SRR4302536.6050477/94‑1 (MQ=60)

TCGCTCAGGGATATCCGGATTTTCCGGTCATTCTCGAAACCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGATGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTCGCCTTTCGCCACAAGTTTATTGTTCGGCTATGTCG  >  NC_000913/1729551‑1729736

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 24 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`