Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1475	266.7	13469680	98.2%	13227225	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,731,175	T→C	R1355R (CGT→CGC)	lhr →	Lhr

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,731,175	0	T	C	100.0%	713.3 / NA	219	R1355R (CGT→CGC)	lhr	Lhr
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (100/119); total (100/119)

Only 100 of 227 total aligned reads displayed.

GTCGTTATTGCAGGTGGAGCCACTAAACGATACCGAAAGGATGCTGGCGCTGGCGGAAAATATGCTCGACCGCTACGGCATCATCAGTCGTCAGGCGGTGATAGCCGAAAATATCCCTGGCGGGTTTCCATCGATGCAAACGCTTTGTCGAAGTATGGAAGACTCCGGGCGAATTATGCG  >  NC_000913/1731085‑1731264

gTCGTTATTGCAGGTGGAGCCACTAAACGATACCGAAAGGATGCTGGCGCTGGCGGAAAATATGCTCGACCGCTACGGCATCATCAGTCGCCa                                                                                         <  2:5850990/93‑1 (MQ=255)

gTCGTTATTGCAGGTGGAGCCACTAAACGATACCGAAAGGATGCTGGCGCTGGCGGAAAATATGCTCGACCGCTACGGCATCATCAGTCGCCa                                                                                         >  2:5044338/1‑93 (MQ=255)

 tCGTTATTGCAGTTGGAGCCACTAAACGATACCGAAAGGATGCTGGCGCTGGCGGAAAATATGCTCGACCGCTACGGCATCATCAGTCGCCAg                                                                                        <  2:4836599/93‑1 (MQ=255)

   gTTATTGCAGGTGGAGCCACTAAACGATACCGAAAGGATGCTGGCGCTGGCGGAAAATATGCTCGACCGCTACGGCATCATCAGTCGCCAGGc                                                                                      <  2:5741706/93‑1 (MQ=255)

       ttGCAGGTGGAGCCACTAAACGATACCGAAAGGATGCTGGCGCTGGCGGAAAATATGCTCGACCGCTACGGCATCATCAGTCGCCAGGCGGTg                                                                                  >  2:5623755/1‑93 (MQ=255)

        tGCAGGTGGAGCCACTAAGCGATACCGAAAGGATGCTGGCGCTGGCGGAAAATATGCTCGACCGCTACGGCATCATCAGTCGCCAGGCGGTGa                                                                                 <  1:2704922/93‑1 (MQ=255)

        tGCAGGTGGAGCCACTAAACGATACCGAAAGGATGCTGGCGCTGGCGGAAAATATGCTCGACCGCTACGGCATCATCAGTCGCCAGGCGGTGa                                                                                 <  1:5639237/93‑1 (MQ=255)

        tGCAGGTGGAGCCACTAAACGATACCGAAAGGATGCTGGCGCTGGCGGAAAATATGCTCGACCGCTACGGCATCATCAGTCGCCAGGCGGTGa                                                                                 <  2:4342789/93‑1 (MQ=255)

         gCAGGTGGAGCCACTAAACGATACCGAAAGGATGCTGGCGCTGGCGGAAAATATGCTCGACCGCTACGGCATCATCAGTCGCCAGGCGGTGAt                                                                                <  2:2288108/93‑1 (MQ=255)

         gCAGGTGGAGCCACTAAACGATACCGAAAGGATGCTGGCGCTGGCGGAAAATATGCTCGACCGCTACGGCATCATCAGTCGCCAGGCGGTGAt                                                                                <  2:1770605/93‑1 (MQ=255)

          cAGGTGGAGCCACTAAACGATACCGAAAGGATGCTGGCGCTGGCGGAAAATATGCTCGACCGCTACGGCATCATCAGTCGCCAGGCGGTGATa                                                                               <  1:4514658/93‑1 (MQ=255)

          cAGGTGGAGCCACTAAACGATACCGAAAGGATGCTGGCGCTGGCGGAAAATATGCTCGACCGCTACGGCATCATCAGTCGCCAGGCGGTGATa                                                                               <  1:6463357/93‑1 (MQ=255)

           aGGTGGAGCCACTAAACGATACCGAAAGGATGCTGGCGCTGGCGGAAAATATGCTCGACCGCTACGGCATCATCAGTCGCCAGGCGGTGATAg                                                                              >  1:5898964/1‑93 (MQ=255)

           aGGTGGAGCCACTAAACGATACCGAAAGGATGCTGGCGCTGGCGGAAAATATGCTCGACCGCTACGGCATCATCAGTCGCCAGGCGGTGATAg                                                                              >  2:3968297/1‑93 (MQ=255)

               agAGCTACTAGACGATACCGAAAGGATGCGGGCGCTGTTGGAAAATATGCTCGACCGCTACGGCATCATCATGCGCCAGGCGGTGATAGCCGa                                                                          <  1:3693584/92‑1 (MQ=255)

                gAGCCACTAAACGAAACCGAAAGGATGCTGGCGCTGGCGGAAAATATGCTCGACCGCTACGGCATCATCAGTCGCCAGGCGGTGATAGCCGaa                                                                         <  1:1932486/93‑1 (MQ=255)

                  gCCACTAAACGATACCGAAAGGATGCTGGCGCTGGCGGAAAATATGCTCGACCGCTACGGCATCATCAGTCGCCAGGCGGTGATAGCCGaaaa                                                                       <  1:5557920/93‑1 (MQ=255)

                  gCCACTAAACGATACCGAAAGGATGCTGGCGCTGGCGGAAAATATGCTCGACCGCTACGGCATCATCAGTCGCCAGGCGGTGATAGCCGaaaa                                                                       <  1:6177548/93‑1 (MQ=255)

                   ccACTAAACGATACCGAAAGGATGCTGGCGCTGGCGGAAAATATGCTCGACCGCTACGGCATCATCAGTCGCCAGGCGGTGATAGCCGAAAat                                                                      <  2:1523404/93‑1 (MQ=255)

                    cACTAAACGATACCGAAAGGATGCTGGCGCTGGCGGAAAATATGCTCGACCGCTACGGCATCATCAGTCGCCAGGCGGTGATAGCCGAAAata                                                                     >  2:4565207/1‑93 (MQ=255)

                    cACTAAACGATACCGAAAGGATGCTGGCGCTGGCGGAAAATATGCTCGACCGCTACGGCATCATCAGTCGCCAGGCGGTGATAGCCGAAAata                                                                     >  2:4772624/1‑93 (MQ=255)

                    cACTAAACGATACCGAAAGGATGCTGGCGCTGGCGGAAAATATGCTCGACCGCTACGGCATCATCAGTCGCCAGGCGGTGATAGCCGAAAata                                                                     >  2:5699447/1‑93 (MQ=255)

                    cACTAAACGATACCGAAAGGATGCTGGCGCTGGCGGAAAATATGCTCGACCGCTACGGCATCATCAGTCGCCAGGCGGTGATAGCCGAAAata                                                                     >  2:371936/1‑93 (MQ=255)

                     aCTAAACGATACCGAAAGGATGCTGGCGCTGGCGGAAAATATGCTCGACCGCTACGGCATCATCAGTCGCCAGGCGGTGATAGCCGAAAatat                                                                    >  2:2001797/1‑93 (MQ=255)

                      cTAAACGATACCGAAAGGATGCTGGCGCTGGCGGAAAATATGCTCGACCGCTACGGCATCATCAGTCGCCAGGCGGTGATAGCCGAAAATATc                                                                   >  1:1897150/1‑93 (MQ=255)

                        aaaCGATACCGAAAGGATGCTGGCGCTGGCGGAAAATATGCTCGACCGCTACGGCATCATCAGTCGCCAGGCGGTGATAGCCGAAAATATccc                                                                 <  2:3017448/93‑1 (MQ=255)

                         aaCGATACCGAAAGGATGCTGGCGCTGGCGGAAAATATGCTCGACCGCTACGGCATCATCAGTCGCCAGGCGGTGATAGCCGAAAATATCCCt                                                                <  2:2799442/93‑1 (MQ=255)

                         aaCGATACCGAAAGGATGCTGGCGCTGGCGGAAAATATGCTCGACCGCTACGGCATCATCAGTCGCCAGGCGGTGATAGCCGAAAATATCCCt                                                                <  1:4981643/93‑1 (MQ=255)

                          aCGATACCGAAAGGATGCTGGCGCTGGCGGAAAATATGCTCGACCGCTACGGCATCATCAGTCGCCAGGCGGTGATAGCCGAAAATATCCCTg                                                               >  2:6167352/1‑93 (MQ=255)

                          aCGATACCGAAAGGATGCTGGCGCTGGCGGAAAATATGCTCGACCGCTACGGCATCATCAGTCGCCAGGCGGTGATAGCCGAAAATATCCCTg                                                               <  1:2161396/93‑1 (MQ=255)

                           cGATACCGAAAGGATGCTGGCGCTGGCGGAAAATATGCTCGACCGCTACGGCATCATCAGTCGCCAGGCGGTGATAGCCGAAAATATCCCTgg                                                              <  1:165951/93‑1 (MQ=255)

                           cGATACCGAAAGGATGCTGGCGCTGGCGGAAAATATGCTCGACCGCTACGGCATCATCAGTCGCCAGGCGGTGATAGCCGAAAATATCCCTgg                                                              <  2:4877346/93‑1 (MQ=255)

                           cGATACCGAAAGGATGCTGGCGCTGGCGGAAAATATGCTCGACCGCTACGGCATCATCAGTCGCCAGGCGGTGATAGCCGAAAATATCCCTgg                                                              <  2:2574508/93‑1 (MQ=255)

                            gATACCGAAAGGATGCTGGCGCTGGCGGAAAATATGCTCGACCGCTACGGCATCATCAGTCGCCAGGCGGTGATAGCCGAAAATATCCCTGGc                                                             <  1:4424676/93‑1 (MQ=255)

                             aTACCGAAAGGATGCTGGCGCTGGCGGAAAATATGCTCGACCGCTACGGCATCATCAGTCGCCAGGCGGTGATAGCCGAAAATATCCCTGGCg                                                            <  2:4664062/93‑1 (MQ=255)

                               aCCGAAAGGATGCTGGCGCTGGCGGAAAATATGCTCGACCGCTACGGCATCATCAGTCGCCAGGCGGTGATAGCCGAAAATATCCCTGGCggg                                                          <  1:6209723/93‑1 (MQ=255)

                               aCCGAAAGGATGCTGGCGCTGGCGGAAAATATGCTCGACCGCTACGGCATCATCAGTCGCCAGGCGGTGATAGCCGAAAATATCCCTGGCggg                                                          <  2:2246282/93‑1 (MQ=255)

                                ccGAAAGGATGCTGGCGCTGGCGGAAAATATGCTCGACCGCTACGGCATCATCAGTCGCCAGGCGGTGATAGCCGAAAATATCCCTGGCGGGt                                                         <  2:5091475/93‑1 (MQ=255)

                                ccGAAAGGATGCTGGCGCTGGCGGAAAATATGCTCGACCGCTACGGCATCATCAGTCGCCAGGCGGTGATAGCCGAAAATATCCCTGGCGGGt                                                         <  1:1812013/93‑1 (MQ=255)

                                ccGAAAGGATGCTGGCGCTGGCGGAAAATATGCTCGACCGCTACGGCATCATCAGTCGCCAGGCGGTGATAGCCGAAAATATCCCTGGCGGGt                                                         <  1:6681812/93‑1 (MQ=255)

                                 cGAAAGGATGCTGGCGCTGGCGGAAAATATGCTCGACCGCTACGGCATCATCAGTCGCCAGGCGGTGATAGCCGAAAATATCCCTGGCGGGtt                                                        <  1:3650820/93‑1 (MQ=255)

                                  gAAAGGATGCTGGCGCTGGCGGAAAATATGCTCGACCGCTACGGCATCATCAGTCGCCAGGCGGTGATAGCCGAAAATATCCCTGGCGGGttt                                                       >  1:5125048/1‑93 (MQ=255)

                                  gAAAGGATGCTGGCGCTGGCGGAAAATATGCTCGACCGCTACGGCATCATCAGTCGCCAGGCGGTGATAGCCGAAAATATCCCTGGCGGGttt                                                       >  2:3875492/1‑93 (MQ=255)

                                   aaaGGATGCTGGCGCTGGCGGAAAATATGCTCGACCGCTACGGCATCATCAGTCGCCAGGCGGTGATAGCCGAAAATATCCCTGGCGGGGTTc                                                      >  1:1162381/1‑93 (MQ=255)

                                    aaGGATGCTGGCGCTGTCGGAAAATATGCTCGACCGCTACGGCATCATCAGTCGCCAGGCGGTGATAGCCGAAAATATCCCTGGCGGGTTTcc                                                     <  1:6715127/93‑1 (MQ=255)

                                    aaGGATGCTGGCGCTGGCGGAAAATATGCTCGACCGCTACGGCATCATCAGTCGCCAGGCGGTGATAGCCGAAAATATCCCTGGCGGGTTTcc                                                     >  1:4164418/1‑93 (MQ=255)

                                    aaGGATGCTGGCGCTGGCGGAAAATATGCTCGACCGCTACGGCATCATCAGTCGCCAGGCGGTGATAGCCGAAAATATCCCTGGCGGGTTTcc                                                     >  1:3557580/1‑93 (MQ=255)

                                     aGGATGCTGGCGCTGGCGGAAAATATGCTCGACCGCTACGGCATCATCAGTCGCCAGGCGGTGATAGCCGAAAATATCCCTGGCGGGTTTCCa                                                    >  1:3116195/1‑93 (MQ=255)

                                      ggATGCTGGCGCTGGCGGAAAATATGCTCGACCGCTACGGCATCATCAGTCGCCAGGCGGTGATAGCCGAAAATATCCCTGGCGGGTTTCCAt                                                   >  1:2103572/1‑93 (MQ=255)

                                      ggATGCTGGCGCTGGCGGAAAATATGCTCGACCGCTACGGCATCATCAGTCGCCAGGCGGTGATAGCCGAAAATATCCCTGGCGGGTTTCCAt                                                   >  1:423023/1‑93 (MQ=255)

                                       gATGCTGGCGCTGGCGGAAAATATGCTCGACCGCTACGGCATCATCAGTCGCCAGGCGGTGATAGCCGAAAATATCCCTGGCGGGTTTCCATc                                                  >  2:834113/1‑93 (MQ=255)

                                            tggcgctggcgGAAAATATGCTCGACCGCTACGGCATCATCAGTCGCCAGGCGGTGATAGCCGAAAATATCCCTGGCGGGCTTCCATCGATGc                                             >  1:1526294/1‑93 (MQ=255)

                                              gcgctggcgGAAAATATGCTCGACCGCTACGGCATCATCAGTCGCCAGGCGGTGATAGCCGAAAATATCCCTGGCGGGTTTCCATCGATGCaa                                           <  2:6055079/93‑1 (MQ=255)

                                                  tggcgGAAAATATGCTCGACCGCTACGGCATCATCAGTCGCCAGGCGGTGATAGCCGAAAATATCCCTGGCGGGTTTCCATCGATGCAAACGc                                       <  2:110190/93‑1 (MQ=255)

                                                  tggcgGAAAATATGCTCGACCGCTACGGCATCATCAGTCGCCAGGCGGTGATAGCCGAAAATATCCCTGGCGGGTTTCCATCGATGCAAACGc                                       <  2:3500822/93‑1 (MQ=255)

                                                   ggcgGAAAATATGCTCGACCGCTACGGCATCATCAGTCGCCAGGCGGTGATAGCCGAAAATATCCCTGGCGGGTTTCCATCGATGCAAACGCt                                      <  1:893524/93‑1 (MQ=255)

                                                   ggcgGAAAATATGCTCGACCGCTACGGCATCATCAGTCGCCAGGCGGTGATAGCCGAAAATATCCCTGGCGGGTTTCCATCGATGCAAACGCt                                      >  1:1905752/1‑93 (MQ=255)

                                                    gcgGAAAATATGCTCGACCGCTACGGCATCATCAGTCGCCAGGCGGTGATAGCCGAAAATATCCCTGGCGGGTTTCCATCGATGCAAACGCtt                                     <  2:4120786/93‑1 (MQ=255)

                                                     cgGAAAATATGCTCGACCGCTACGGCATCATCAGTCGCCAGGCGGTGATAGCCGAAAATATCCCTGGCGGGTTTCCATCGATGCAAACGCttt                                    <  2:749416/93‑1 (MQ=255)

                                                     cgGAAAATATGCTCGACCGCTACGGCATCATCAGTCGCCAGGCGGTGATAGCCGAAAATATCCCTGGCGGGTTTCCATCGATGCAAACGCttt                                    >  2:6359620/1‑93 (MQ=255)

                                                      ggAAAATATGCTCGACCGCTACGGCATCATCAGTCGCCAGGCGGTGATAGCCGAAAATATCCCTGGCGGGTTTCCATCGATGCAAACGCtttt                                   >  1:4714709/1‑92 (MQ=255)

                                                      ggAAAATATGCTCGACCGCTACGGCATCATCAGTCGCCAGGCGGTGATAGCCGAAAATATCCCTGGCGGGTTTCCATCGATGCAAACGCTTTg                                   >  2:318407/1‑93 (MQ=255)

                                                       gAAAATATGCTCGACCGCTACGGCATCATCAGTCGCCAGGCGGTGATAGCCGAAAATATCCCTGGCGGGTTTCCATCGATGCAAACGCTTTGt                                  <  2:1615088/93‑1 (MQ=255)

                                                       gAAAATATGCTCGACCGCTACGGCATCATCAGTCGCCAGGCGGTGATAGCCGAAAATATCCCTGGCGGGTTTCCATCGATGCAAACGCTTTGt                                  <  2:4374099/93‑1 (MQ=255)

                                                        aaaaTATGCTCGACCGCTACGGCATCATCAGTCGCCAGGCGGTGATAGCCGAAAATATCCCTGGCGGGTTTCCATCGATGCAAACGCTTTGTc                                 >  1:1433190/1‑93 (MQ=255)

                                                        aaaaTATGCTCGACCGCTACGGCATCATCAGTCGCCAGGCGGTGATAGCCGAAAATATCCCTGGCGGGTTTCAATCGATGCAAACGCTTTGtg                                 >  2:367604/1‑92 (MQ=255)

                                                              tGCTCGACCGCTACGGCATCATCAGTCGCCAGGCGGTGATAGCCGAAAATATCCCTGGCGGGTTTCCATCGATGCAAACGCTTTGTCGAAGTa                           >  1:2858170/1‑93 (MQ=255)

                                                              tGCTCGACCGCTACGGCATCATCAGTCGCCAGGCGGTGATAGCCGAAAATATCCCTGGCGGGTTTCCATCGATGCAAACGCTTTGTCGAAGTa                           >  2:6706151/1‑93 (MQ=255)

                                                               gCTCGACCGCTACGGCATCATCAGTCGCCAGGCGGTGATAGCCGAAAATATCCCTGGCGGGTTTCCATCGATGCAAACGCTTTGTCGAAGTAt                          >  1:2334308/1‑93 (MQ=255)

                                                               gCTCGACCGCTACGGCATCATCAGTCGCCAGGCGGTGATAGCCGAAAATATCCCTGGCGGGTTTCCATCGATGCAAACGCTTTGTCGAAGTAt                          >  2:2450504/1‑93 (MQ=255)

                                                               gCTCGACCGCTACGGCATCATCAGTCGCCAGGCGGTGATAGCCGAAAATATCCCTGGCGGGTTTCCATCGATGCAAACGCTTTGTCGAAGTAt                          <  2:3612433/93‑1 (MQ=255)

                                                                cTCGACCGCTACGGCATCATCAGTCGCCAGGCGGTGATAGCCGAAAATATCCCTGGCGGGTTTCCATCGATGCAAACGCTTTGTCGAAGTATg                         <  1:2574432/93‑1 (MQ=255)

                                                                cTCGACCGCTACGGCATCATCAGTCGCCAGGCGGTGATAGCCGAAAATATCCCTGGCGGGTTTCCATCGATGCAAACGCTTTGTCGAAGTATg                         >  1:2114465/1‑93 (MQ=255)

                                                                 tCGACCGCTACGTCATCATCAGTCGCCAGGCGGTGATAGCCGAAAATATCCCTGGCGGGTTTCCATCGATGCAAACGCTTTGTCGAAGTATgg                        <  1:3065702/93‑1 (MQ=255)

                                                                 tCGACCGCTACGGCATCATCAGTCGCCAGGCGGTGATAGCCGCAAATATCCCTGGCGGGTTTCCATCGATGCAAACGCTTTGTCGAAGTATgg                        >  2:3569872/1‑93 (MQ=255)

                                                                    aCCGCTACGGCATCATCAGTCGCCAGGCGGTGATAGCCGAAAATATCCCTGGCGGGTTTCCATCGATGCAAACGCTTTGTCGAAGTATGGAAg                     <  1:3884911/93‑1 (MQ=255)

                                                                    aCCGCTACGGCATCATCAGTCGCCAGGCGGTGATAGCCGAAAATATCCCTGGCGGGTTTCCATCGATGCAAACGCTTTGTCGAAGTATGGAAg                     <  1:5210936/93‑1 (MQ=255)

                                                                     ccGCTACGGCATCATCAGTCGCCAGGCGGTGATAGCCGAAAATATCCCTGGCGGGTTTCCATCGATGCAAACGCTTTGTCGAAGTATGGAAGa                    <  2:1218640/93‑1 (MQ=255)

                                                                      cgcgACGGCAGCATCAGGCGCCAGGCCGTGATAGCCGAAAATATCCCTGGCGGGTTGCCATCGATGCAAACGCTTTGTCGAAGTATGGAAGAc                   <  1:2496906/93‑1 (MQ=255)

                                                                      cGCTACGGCATCATCAGTCGCCAGGCGGTGATAGCCGAAAATATCCCTGGCGGGTTTCCATCGATGCAAACGCTTTGTCGAAGTATGGAAGAc                   >  1:3305321/1‑93 (MQ=255)

                                                                      cGCTACGGCATCATCAGTCGCCAGGCGGTGATAGCCGAAAATATCCCTGGCGGGTTTCCATCGATGCAAACGCTTTGTCGAAGTATGGAAGAc                   <  2:5596533/93‑1 (MQ=255)

                                                                      cGCTACGGCATCATCAGTCGCCAGGCGGTGATAGCCGAAAATATCCCTGGCGGGTTTCCATCGATGCAAACGCTTTGTCGAAGAATGAAAGaa                   >  1:5466452/1‑92 (MQ=255)

                                                                        cTACGGCATCATCAGTCGCCAGGCGGTGATAGCCGAAAATATCCCTGGCGGGTTTCCATCGATGCAAACGCTTTGTCGAAGTATGGAAGACTc                 <  2:4528484/93‑1 (MQ=255)

                                                                              catgatCAGTCGCCAGGCGGTGATAGCCGAAAATATCCCTGGCGGGTTTCCATCGATGCAAACGCTTTGTCGAAGTATGGAAGACTCCGGGCg           <  1:6497564/93‑1 (MQ=255)

                                                                               atcatcAGTCGCCAGGCGGTGATAGCCGAAAATATCCCTGGCGGGTTTCCATCGATGCAAACGCTTTGTCGAAGTATGGAAGACTCCGGGCGa          >  1:874538/1‑93 (MQ=255)

                                                                                tcatcaGTCGCCAGGCGGTGATAGCCGAAAATATCCCTGGCGGGTTTCCATCGATGCAAACGCTTTGTCGAAGTATGGAAGACTCCGGGCGaa         >  2:3922177/1‑93 (MQ=255)

                                                                                tcatcaGTCGCCAGGCGGTGATAGCCGAAAATATCCCTGGCGGGTTTCCATCGATGCAAACGCTTTGTCGAAGTATGGAAGACTCCGGGCGaa         >  1:5353742/1‑93 (MQ=255)

                                                                                tcatcaGTCGCCAGGCGGTGATAGCCGAAAATATCCCTGGCGGGTTTCCATCGATGCAAACGCTTTGTCGAAGTATGGAAGACTCCGGGCGaa         >  2:3301781/1‑93 (MQ=255)

                                                                                  atcaGTCGCCAGGCGGTGATAGCCGAAAATATCCCTGGCGGGGTTCCATCGATGCAAACGCTTTGTCGAAGTATGGCAGACTCCGGGCGAAtt       >  1:2813598/1‑93 (MQ=255)

                                                                                   tcaGTCGCCAGGCGGTGATAGCCGAAAATATCCCTGGCTGGTTTCCATCGATGAAAACGCTTTGTCGAAGTATGGAAGACTCCGGGCGAATTa      <  1:2763974/93‑1 (MQ=255)

                                                                                   tcaGTCGCCAGGCGGTGATAGCCGAAAATATCCCTGGCGGGTTTCCATCGATGCAAACGCTTTGTCGAAGTATGGAAGACTCCGGGCGAATTa      >  1:3932109/1‑93 (MQ=255)

                                                                                   tcaGTCGCCAGGCGGTGATAGCCGAAAATATCCCTGGCGGGTTTCCATCGATGCAAACGCTTTGTCGAAGTATGGAAGACTCCGGGCGAATTa      <  2:1807080/93‑1 (MQ=255)

                                                                                   tcaGTCGCCAGGCGGTGATAGCCGAAAATATCCCTGGCGGGTTTCCATCGATGCAAACGCTTTGTCGAAGTATGGAAGACTCCGGGCGAATTa      >  1:1032090/1‑93 (MQ=255)

                                                                                    caGTCGCCAGGCGGTGATAGCCGAAAATATCCCTGGCGGGTTTCCATCGATGCAAACGCTTTGTCGAAGTATGGAAGACTCCGGGCGAATTAt     <  2:5341183/93‑1 (MQ=255)

                                                                                     aGTCGCCAGGCGGTGATAGCCGAAAATATCCCTGGCGGGTTTCCATCGATGCAAACGCTTTGTCGAAGTATGGAAGACTCCGGGCGAATTATg    >  2:3080888/1‑93 (MQ=255)

                                                                                     aGTCGCCAGGCGGTGATAGCCGAAAATATCCCTGGCGGGTTTCCATCGATGCAAACGCTTTGTCGAAGTATGGAAGACTCCGGGCGAATTATg    <  2:1945938/93‑1 (MQ=255)

                                                                                     aGTCGCCAGGCGGTGATAGCCGAAAATATCCCTGGCGGGTTTCCATCGATGCAAACGCTTTGTCGAAGTATGGAAGACTCCGGGCGAATTATg    <  1:3227531/93‑1 (MQ=255)

                                                                                       tcgccAGGCGGTGATAGCCGAAAATATCCCTGGCGGGTTTCCATCGATGCAAACGCTTTGTCGAAGTATGGAAGACTCCGGGCGAATTATGct  >  2:2157033/1‑92 (MQ=255)

                                                                                       tcgccAGGCGGTGATAGCCGAAAATATCCCTGGCGGGTTTCCATCGATGCAAACGCTTTGTCGAAGTATGGAAGACTCCGGGCGAATTATGCg  <  2:1705129/93‑1 (MQ=255)

                                                                                       tcgccAGGCGGTGATAGCCGAAAATATCCCTGGCGGGTTTCCATCGATGCAAACGCTTTGTCGAAGTATGGAAGACTCCGGGCGAATTATGCg  <  2:4137137/93‑1 (MQ=255)

GTCGTTATTGCAGGTGGAGCCACTAAACGATACCGAAAGGATGCTGGCGCTGGCGGAAAATATGCTCGACCGCTACGGCATCATCAGTCGTCAGGCGGTGATAGCCGAAAATATCCCTGGCGGGTTTCCATCGATGCAAACGCTTTGTCGAAGTATGGAAGACTCCGGGCGAATTATGCG  >  NC_000913/1731085‑1731264

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

TGGTCGTTATTGCAGGTGGAGCCACTAAACGATACCGAAAGGATGCTGGCGCTGGCGGAAAATATGCTCGACCGCTACGGCATCATCAGTCGTCAGGCGGTGATAGCCGAAAATATCCCTGGCGGGTTTCCATCGATGCAAACGCTTTGTCGAAGTATGGAAGACTCCGGGCGAATTATGCGAGGT  >  NC_000913/1731083‑1731268

TGGTCGTTATTGCAGGTGGAGCCACTAAACGATACCGAAAGGATGCTGGCGCTGGCGGAAAATATGCTCGACCGCTACGGCATCATCAGTCGCC                                                                                              <  SRR4302536.1799867/94‑1 (MQ=60)

 GGTCGTTATTGCAGGTGGAGCCACTAAACGATACCGAAAGGATGCTGGCGCTGGCGGAAAATATGCTCGACCGCTACGGCATCATCAGTCGCCA                                                                                             <  SRR4302536.4395153/94‑1 (MQ=60)

    CGTTATTGCAGGTGGAGCCACTAAACGATACCGAAAGGATGCTGGCGCTGGCGGAAAATATGCTCGACCGCTACGGCATCATCAGTCGCCAGGC                                                                                          <  SRR4302536.3982883/94‑1 (MQ=60)

     GTTATTGCAGGTGGAGCCACTAAACGATACCGAAAGGATGCTGGCGCTGGCGGAAAATATGCTCGACCGCTACGGCATCATCAGTCGCCAGGCG                                                                                         >  SRR4302536.109053/1‑94 (MQ=60)

     GTTATTGCAGGTGGAGCCACTAAACGATACCGAAAGGATGCTGGCGCTGGCGGAAAATATGCTCGACCGCTACGGCATCATCAGTCGCCAGGCG                                                                                         <  SRR4302536.5241556/94‑1 (MQ=60)

       TATTGCAGGTGGAGCCACTAAACGATACCGAAAGGATGCTGGCGCTGGCGGAAAATATGCTCGACCGCTACGGCATCATCAGTCGCCAGGCGGT                                                                                       <  SRR4302536.688300/94‑1 (MQ=60)

       TATTGCAGGTGGAGCCACTAAACGATACCGAAAGGATGCTGGCGCTGGCGGAAAATATGCTCGACCGCTACGGCATCATCAGTCGCCAGGCGGG                                                                                       >  SRR4302536.3430765/1‑94 (MQ=60)

        ATTGCAGGTGGAGCCACTAAACGATACCGAAAGGATGCTGGCGCTGGCGGAAAATATGCTCGACCGCTACGGCATCATCAGTCGCCAGGCGGTG                                                                                      <  SRR4302536.2172703/94‑1 (MQ=60)

          TGCAGGTGGAGCCACTAAGCGATACCGAAAGGATGCTGGCGCTGGCGGAAAATATGCTCGACCGCTACGGCATCATCAGTCGCCAGGCGGTGAT                                                                                    <  SRR4302536.2785595/94‑1 (MQ=60)

          TGCAGGTGGAGCCACTAAACGATACCGAAAGGATGCTGGCGCTGGCGGAAAATATGCTCGACCGCTACGGCATCATCAGTCGCCAGGCGGTGAT                                                                                    <  SRR4302536.5806780/94‑1 (MQ=60)

          TGCAGGTGGAGCCACTAAACGATACCGAAAGGATGCTGGCGCTGGCGGAAAATATGCTCGACCGCTACGGCATCATCAGTCGCCAGGCGGTGAT                                                                                    <  SRR4302536.2921385/94‑1 (MQ=60)

           GCAGGTGGAGCCACTAAACGATACCGAAAGGATGCTGGCGCTGGCGGAAAATATGCTCGACCGCTACGGCATCATCAGTCGCCAGGCGGTGATA                                                                                   <  SRR4302536.4836849/94‑1 (MQ=60)

            CAGGTGGAGCCACTAAACGATACCGAAAGGATGCTGGCGCTGGCGGAAAATATGCTCGACCGCTACGGCATCATCAGTCGCCAGGCGGTGATAG                                                                                  <  SRR4302536.6656290/94‑1 (MQ=60)

            CAGGTGGAGCCACTAAACGATACCGAAAGGATGCTGGCGCTGGCGGAAAATATGCTCGACCGCTACGGCATCATCAGTCGCCAGGCGGTGATAG                                                                                  >  SRR4302536.6074606/1‑94 (MQ=60)

            CAGGTGGAGCCACTAAACGATACCGAAAGGATGCTGGCGCTGGCGGAAAATATGCTCGACCGCTACGGCATCATCAGTCGCCAGGCGGTGATAG                                                                                  <  SRR4302536.1876077/94‑1 (MQ=60)

            CAGGTGGAGCCACTAAACGATACCGAAAGGATGCTGGCGCTGGCGGAAAATATGCTCGACCGCTACGGCATCATCAGTCGCCAGGCGGTGATAG                                                                                  <  SRR4302536.4650068/94‑1 (MQ=60)

             AGGTGGAGCCACTAAACGATACCGAAAGGATGCTGGCGCTGGCGGAAAATATGCTCGACCGCTACGGCATCATCAGTCGCCAGGCGGTGATAGC                                                                                 >  SRR4302536.3157521/1‑94 (MQ=60)

             AGGTGGAGCCACTAAACGATACCGAAAGGATGCTGGCGCTGGCGGAAAATATGCTCGACCGCTACGGCATCATCAGTCGCCAGGCGGTGATAGC                                                                                 >  SRR4302536.1963492/1‑94 (MQ=60)

              GGTGGAGCCACTAAACGATACCGAAAGGATGCTGGCGCTGGCGGAAAATATGCTCGACCGCTACGGCATCATCAGTCGCCAGGCGGTGATAGCC                                                                                >  SRR4302536.2566563/1‑94 (MQ=60)

                 AGAGCTACTAGACGATACCGAAAGGATGCGGGCGCTGTTGGAAAATATGCTCGACCGCTACGGCATCATCATGCGCCAGGCGGTGATAGCCGAA                                                                             <  SRR4302536.3804047/94‑1 (MQ=60)

                  GAGCCACTAAACGAAACCGAAAGGATGCTGGCGCTGGCGGAAAATATGCTCGACCGCTACGGCATCATCAGTCGCCAGGCGGTGATAGCCGAAA                                                                            <  SRR4302536.1990599/94‑1 (MQ=60)

                    GCCACTAAACGATACCGAAAGGATGCTGGCGCTGGCGGAAAATATGCTCGACCGCTACGGCATCATCAGTCGCCAGGCGGTGATAGCCGAAAAT                                                                          <  SRR4302536.5723449/94‑1 (MQ=60)

                    GCCACTAAACGATACCGAAAGGATGCTGGCGCTGGCGGAAAATATGCTCGACCGCTACGGCATCATCAGTCGCCAGGCGGTGATAGCCGAAAAT                                                                          <  SRR4302536.2046958/94‑1 (MQ=60)

                    GCCACTAAACGATACCGAAAGGATGCTGGCGCTGGCGGAAAATATGCTCGACCGCTACGGCATCATCAGTCGCCAGGCGGTGATAGCCGAAAAT                                                                          <  SRR4302536.6361547/94‑1 (MQ=60)

                      CACTAAACGATACCGAAAGGATGCTGGCGCTGGCGGAAAATATGCTCGACCGCTACGGCATCATCAGTCGCCAGGCGGTGATAGCCGAAAATAT                                                                        <  SRR4302536.1512590/94‑1 (MQ=60)

                       ACTAAACGATACCGAAAGGATGCTGGCGCTGGCGGAAAATATGCTCGACCGCTACGGCATCATCAGTCGCCAGGCGGTGATAGCCGAAAATATC                                                                       >  SRR4302536.4067455/1‑94 (MQ=60)

                       ACTAAACGATACCGAAAGGATGCTGGCGCTGGCGGAAAATATGCTCGACCGCTACGGCATCATCAGTCGCCAGGCGGTGATAGCCGAAAATATC                                                                       >  SRR4302536.1954280/1‑94 (MQ=60)

                          AAACGATACCGAAAGGATGCTGGCGCTGGCGGAAAATATGCTCGACCGCTACGGCATCATCAGTCGCCAGGCGGTGATAGCCGAAAATATCCCT                                                                    <  SRR4302536.4524273/94‑1 (MQ=60)

                          AAACGATACCGAAAGGATGCTGGCGCTGGCGGAAAATATGCTCCACCGCTACGGCATCATCAGTCGCCAGGCGGTGATAGCCGAAAATATCCCT                                                                    <  SRR4302536.5709823/94‑1 (MQ=60)

                           AACGATACCGAAAGGATGCTGGCGCTGGCGGAAAATATGCTCGACCGCTACGGCATCATCAGTCGCCAGGCGGTGATAGCCGAAAATATCCCTG                                                                   <  SRR4302536.3364908/94‑1 (MQ=60)

                           AACGATACCGAAAGGATGCTGGCGCTGGCGGAAAATATGCTCGACCGCTACGGCATCATCAGTCGCCAGGCGGTGATAGCCGAAAATATCCCTG                                                                   <  SRR4302536.5131230/94‑1 (MQ=60)

                            ACGATACCGAAAGGATGCTGGCGCTGGCGGAAAATATGCTCGACCGCTACGGCATCATCAGTCGCCAGGCGGTGATAGCCGAAAATATCCCTGG                                                                  <  SRR4302536.2226408/94‑1 (MQ=60)

                             CGATACCGAAAGGATGCTGGCGCTGGCGGAAAATATGCTCGACCGCTACGGCATCATCAGTCGCCAGGCGGTGATAGCCGAAAATATCCCTGGC                                                                 <  SRR4302536.170279/94‑1 (MQ=60)

                             CGATACCGAAAGGATGCTGGCGCTGGCGGAAAATATGCTCGACCGCTACGGCATCATCAGTCGCCAGGCGGTGATAGCCGAAAATATCCCTGGC                                                                 >  SRR4302536.1624418/1‑94 (MQ=60)

                              GATACCGAAAGGATGCTGGCGCTGGCGGAAAATATGCTCGACCGCTACGGCATCATCAGTCGCCAGGCGGTGATAGCCGAAAATATCCCTGGCG                                                                <  SRR4302536.3888337/94‑1 (MQ=60)

                              GATACCGAAAGGATGCTGGCGCTGGCGGAAAATATGCTCGACCGCTACGGCATCATCAGTCGCCAGGCGGTGATAGCCGAAAATATCCCTGGCG                                                                <  SRR4302536.4557220/94‑1 (MQ=60)

                                TACCGAAAGGATGCTGGCGCTGGCGGAAAATATGCTCGACCGCTACGGCATCATCAGTCGCCAGGCGGTGATAGCCGAAAATATCCCTGGCGGG                                                              <  SRR4302536.5309120/94‑1 (MQ=60)

                                 ACCGAAAGGATGCTGGCGCTGGCGGAAAATATGCTCGACCGCTACGGCATCATCAGTCGCCAGGCGGTGATAGCCGAAAATATCCCTGGCGGGT                                                             <  SRR4302536.6394727/94‑1 (MQ=60)

                                  CCGAAAGGATGCTGGCGCTGGCGGAAAATATGCTCGACCGCTACGGCATCATCAGTCGCCAGGCGGTGATAGCCGAAAATATCCCTGGCGGGTT                                                            <  SRR4302536.6880286/94‑1 (MQ=60)

                                  CCGAAAGGATGCTGGCGCTGGCGGAAAATATGCTCGACCGCTACGGCATCATCAGTCGCCAGGCGGTGATAGCCGAAAATATCCCTGGCGGGTT                                                            <  SRR4302536.1866681/94‑1 (MQ=60)

                                   CGAAAGGATGCTGGCGCTGGCTGAAAATATGCTCGACCGCTACGGCATCATCAGTCGCCAGGCGGTGATAGCCTAAAATATCCCTGGCGGGTTT                                                           <  SRR4302536.4282409/94‑1 (MQ=60)

                                   CGAAAGGATGCTGGCGCTGGCGGAAAATATGCTCGACCGCTACGGCATCATCAGTCGCCAGGCGGTGATAGCCGAAAATATCCCTGGCGGGTTT                                                           <  SRR4302536.570657/94‑1 (MQ=60)

                                   CGAAAGGATGCTGGCGCTGGCGGAAAATATGCTCGACCGCTACGGCATCATCAGTCGCCAGGCGGTGATAGCCGAAAATATCCCTGGCGGGTTT                                                           >  SRR4302536.5278171/1‑94 (MQ=60)

                                   CGAAAGGATGCTGGCGCTGGCGGAAAATATGCTCGACCGCTACGGCATCATCAGTCGCCAGGCGGTGATAGCCGAAAATATCCCTGGCGGGTTT                                                           <  SRR4302536.3759970/94‑1 (MQ=60)

                                   CGAAAGGATGCTGGCGCTGGCGGAAAATATGCTCGACCGCTACGGCATCATCAGTCGCCAGGCGGTGATAGCCGAAAATATCCCTGGCGGGTTT                                                           >  SRR4302536.1990311/1‑94 (MQ=60)

                                   CGAAAGGATGCTGGCGCTGGCGGAAAATATGCTCGACCGCTACGGCATCATCAGTCGCCAGGCGGTGATAGCCGAAAATATCCCTGGCGGGTTT                                                           <  SRR4302536.2636273/94‑1 (MQ=60)

                                    GAAAGGATGCTGGCGCTGGCGGAAAATATGCTCGACCGCTACGGCATCATCAGTCGCCAGGCGGTGATAGCCGAAAATATCCCTGGCGGGTTTC                                                          >  SRR4302536.1961716/1‑94 (MQ=60)

                                    GAAAGGATGCTGGCGCTGGCGGAAAATATGCTCGACCGCTACGGCATCATCAGTCGCCAGGCGGTGATAGCCGAAAATATCCCTGGCGGGGTTC                                                          >  SRR4302536.1197370/1‑94 (MQ=60)

                                     AAAGGATGCTGGCGCTGGCGGAAAATATGCTCGACCGCTACGGCATCATCAGTCGCCAGGCGGTGATAGCCGAAAATATCCCTGGCGGGTTTCC                                                         >  SRR4302536.3663963/1‑94 (MQ=60)

                                     AAAGGATGCTGGCGCTGGCGGAAAATATGCTCGACCGCTACGGCATCATCAGTCGCCAGGCGGTGATAGCCGAAAATATCCCTGGCGGGTTTCC                                                         >  SRR4302536.2350634/1‑94 (MQ=60)

                                     AAAGGATGCTGGCGCTGGCGGAAAATATGCTCGACCGCTACGGCATCATCAGTCGCCAGGCGGTGATAGCCGAAAATATCCCTGGCGGGTTTCC                                                         <  SRR4302536.4361038/94‑1 (MQ=60)

                                     AAAGGATGCTGGCGCTGGCGGAAAATATGCTCGACCGCTACGGCATCATCAGTCGCCAGGCGGTGATAGCCGAAAATATCCCTGGCGGGTTTCC                                                         >  SRR4302536.4288138/1‑94 (MQ=60)

                                     AAAGGATGCTGGCGCTGGCGGAAAATATGCTCGACCGCTACGGCATCATCAGTCGCCAGGCGGTGATAGCCGAAAATATCCCTGGCGGGTTTCC                                                         <  SRR4302536.4323261/94‑1 (MQ=60)

                                      AAGGATGCTGGCGCTGTCGGAAAATATGCTCGACCGCTACGGCATCATCAGTCGCCAGGCGGTGATAGCCGAAAATATCCCTGGCGGGTTTCCA                                                        <  SRR4302536.6914472/94‑1 (MQ=60)

                                      AAGGATGCTGGCGCTGGCGGAAAATATGCTCGACCGCTACGGCATCATCAGTCGCCAGGCGGTGATAGCCGAAAATATCCCTGGCGGGTTTCCA                                                        >  SRR4302536.3303181/1‑94 (MQ=60)

                                      AAGGATGCTGGCGCTGGCGGAAAATATGCTCGACCGCTACGGCATCATCAGTCGCCAGGCGGTGATAGCCGAAAATATCCCTGGCGGGTTTCCA                                                        >  SRR4302536.3207229/1‑94 (MQ=60)

                                       AGGATGCTGGCGCTGGCGGAAAATATGCTCGACCGCTACGGCATCATCAGTCGCCAGGCGGTGATAGCCGAAAATATCCCTGGCGGGTTTCCAT                                                       <  SRR4302536.5689129/94‑1 (MQ=60)

                                       AGGATGCTGGCGCTGGCGGAAAATATGCTCGACCGCTACGGCATCATCAGTCGCCAGGCGGTGATAGCCGAAAATATCCCTGGCGGGTTTCCAT                                                       >  SRR4302536.434171/1‑94 (MQ=60)

                                       AGGATGCTGGCGCTGGCGGAAAATATGCTCGACCGCTACGGCATCATCAGTCGCCAGGCGGTGATAGCCGAAAATATCCCTGGCGGGTTTCCAT                                                       >  SRR4302536.2166815/1‑94 (MQ=60)

                                           TGCTGGCGCTGGCGGAAAATATGCTCGACCGCTACGGCATCATCAGTCGCCAGGCGGTGATAGCCGAAAATATCCCTGGCGGGTTTCCATCGAT                                                   >  SRR4302536.3110476/1‑94 (MQ=60)

                                           TGCTGGCGCTGGCGGAAAATATGCTCGACCGCTACGGCATCATCAGTCGCCAGGCGGTGATAGCCGAAAATATCCCTGGCGGGTTTCCATCGAT                                                   <  SRR4302536.3676702/94‑1 (MQ=60)

                                             CTGGCGCTGGCGGAAAATATGCTCGACCGCTACGGCATCATCAGTCGCCAGGCGGTGATAGCCGAAAATATCCCTGGCGGGCTTCCATCGATGC                                                 >  SRR4302536.1571209/1‑94 (MQ=60)

                                             CTGGCGCTGGCGGAAAATATGCTCGACCGCTACGGCATCATCAGTCGCCAGGCGGTGATAGCCGAAAATATCCCTAGCGGGTTGCCATTGATGA                                                 >  SRR4302536.4640870/1‑94 (MQ=60)

                                              TGGCGCTGGCGGAAAATATGCTCGACCGCTACGGCATCATCAGTCGCCAGGCGGTGATAGCCGAAAATATCCCTGGCGGGTTTCCATCGATGCA                                                <  SRR4302536.912242/94‑1 (MQ=60)

                                                    TGGCGGAAAATATGCTCGACCGCTACGGCATCATCAGTCGCCAGGCGGTGATAGCCGAAAATATCCCTGGCGGGTTTCCATCGATGCAAACGCT                                          <  SRR4302536.6861974/94‑1 (MQ=60)

                                                    TGGCGGAAAATATGCTCGACCGCTACGGCATCATCAGTCGCCAGGCGGTGATAGCCGAAAATATCCCTGGCGGGTTTCCATCGATGCAAACGCT                                          >  SRR4302536.1963126/1‑94 (MQ=60)

                                                     GGCGGAAAATATGCTCGACCGCTACGGCATCATCAGTCGCCAGGCGGTGATAGCCGAAAATATCCCTGGCGGGTTTCCATCGATGCAAACGCTT                                         <  SRR4302536.919847/94‑1 (MQ=60)

                                                      GCGGAAAATATGCTCGACCGCTACGGCATCATCAGTCGCCAGGCGGTGATAGCCGAAAATATCCCTGGCGGGTTTCCATCGATGCAAACGCTTT                                        <  SRR4302536.2819329/94‑1 (MQ=60)

                                                       CGGAAAATATGCTCGACCGCTACGGCATCATCAGTCGCCAGGCGGTGATAGCCGAAAATATCCCTGGCGGGTTTCCATCGATGCAAACGCTTTT                                       >  SRR4302536.4856539/1‑94 (MQ=60)

                                                       CGGAAAATATGCTCGACCGCTACGGCATCATCAGTCGCCAGGCGGTGATAGCCGAAAATATCCCTGGCGGGTTTCCATCGATGCAAACGCTTTG                                       <  SRR4302536.6354913/94‑1 (MQ=60)

                                                       CGGAAAATATGCTCGACCGCTACGGCATCATCAGTCGCCAGGCGGTGATAGCCGAAAATATCCCTGGCGGGTTTCCATCGATGCAAACGCTTTG                                       <  SRR4302536.967017/94‑1 (MQ=60)

                                                         GAAAATATGCTCGACCGCTACGGCATCATCAGTCGCCAGGCGGTGATAGCCGAAAATATCCCTGGCGGGTTTCCATCGATGCAAACGCTTTGTC                                     >  SRR4302536.1475725/1‑94 (MQ=60)

                                                             ATATGCTCGACCGCTACGGCATCATCAGTCGCCAGGCGGTGATAGCCGAAAATATCCCTGGCGGGTTTCCATCGATGCAAACGCTTTGTCGAAG                                 <  SRR4302536.2872463/94‑1 (MQ=60)

                                                             ATATGCTCGACCGCTACGGCATCATCAGTCGCCAGGCGGTGATAGCCGAAAATATCCCTGGCGGGGTTCCATCCATGCAAAAGCTTTGTCGAAG                                 >  SRR4302536.3569444/1‑94 (MQ=60)

                                                               ATGCTCGACCGCTACGGCATCATCAGTCGCCAGGCGGTGATAGCCGAAAATATCCCTGGCGGGTTTCCATCGATGCAAACGCTTTGTCGAAGTA                               >  SRR4302536.2942664/1‑94 (MQ=60)

                                                                TGCTCGACCGCTACGGCATCATCAGTCGCCAGGCGGTGATAGCCGAAAATATCCCTGGCGGGTTTCCATCGATGCAAACGCTTTGTCGAAGTAT                              >  SRR4302536.2405138/1‑94 (MQ=60)

                                                                 GCTCGACCGCTACGGCATCATCAGTCGCCAGGCGGTGATAGCCGAAAATATCCCTGGCGGGTTTCCATCGATGCAAACGCTTTGTCGAAGTATG                             >  SRR4302536.2180023/1‑94 (MQ=60)

                                                                 GCTCGACCGCTACGGCATCATCAGTCGCCAGGCGGTGATAGCCGAAAATATCCCTGGCGGGTTTCCATCGATGCAAACGCTTTGTCGAAGTATG                             >  SRR4302536.2178003/1‑94 (MQ=60)

                                                                  CTCGACCGCTACGGCATCATCAGTCGCCAGGCGGTGATAGCCGAAAATATCCCTGGCGGGTTTCCATCGATGCAAACGCTTTGTCGAAGTATGG                            <  SRR4302536.2669956/94‑1 (MQ=60)

                                                                  CTCGACCGCTACGGCATCATCAGTCGCCAGGCGGTGATAGCCGAAAATATCCCTGGCGGGTTTCCATCGATGCAAACGCTTTGTCGAAGTATGG                            <  SRR4302536.2651842/94‑1 (MQ=60)

                                                                  CTCGACCGCTACGGCATCATCAGTCGCCAGGCGGTGATAGCCGAAAATATCCCTGGCGGGTTTCCATCGATGCAAACGCTTTGTCGAAGTATGG                            >  SRR4302536.1746460/1‑94 (MQ=60)

                                                                   TCGACCGCTACGTCATCATCAGTCGCCAGGCGGTGATAGCCGAAAATATCCCTGGCGGGTTTCCATCGATGCAAACGCTTTGTCGAAGTATGGA                           <  SRR4302536.3155586/94‑1 (MQ=60)

                                                                   TCGACCGCTACGGCATCATCAGTCGCCAGGCGGTGATAGCCGAAAATATCCCTGGCGGGTTTCCATCGATGCAAACGCTTTGTCGAAGTATGGA                           >  SRR4302536.842138/1‑94 (MQ=60)

                                                                     GACCGCTACGGCATCATCAGTCGCCAGGCGGTGATAGCCGAAAATATCCCTGGCGGGTTTCCATCGATGCAAACGCTTTGTCGAAGTATGGAAG                         <  SRR4302536.2695550/94‑1 (MQ=60)

                                                                      ACCGCTACGGCATCATCAGTCGCCAGGCGGTGATAGCCGAAAATATCCCTGGCGGGTTTCCATCGATGCAAACGCTTTGTCGAAGTATGGAAGA                        <  SRR4302536.5366244/94‑1 (MQ=60)

                                                                      ACCGCTACGGCATCATCAGTCGCCAGGCGGTGATAGCCGAAAATATCCCTGGCGGGTTTCCATCGATGCAAACGCTTTGTCGAAGTATGGAAGA                        >  SRR4302536.5379964/1‑94 (MQ=60)

                                                                      ACCGCTACGGCATCATCAGTCGCCAGGCGGTGATAGCCGAAAATATCCCTGGCGGGTTTCCATCGATGCAAACGCTTTGTCGAAGTATGGAAGA                        <  SRR4302536.4000466/94‑1 (MQ=60)

                                                                       CCGCTACGGCATCATCAGTCGCCAGGCGGTGATAGCCGAAAATATCCCTGGCGGGTTTCCATCGATGCAAACGCTTTGTCGAAGaatgaaagaa                       >  SRR4302536.5629804/1‑84 (MQ=60)

                                                                       CCGCTACGGCATCATCAGTCGCCAGGCGGTGATAGCCGAAAATATCCCTGGCGGGTTTCCATCGATGCAAACGCTTTGTCGAAGTATGGAAGAC                       >  SRR4302536.3402885/1‑94 (MQ=60)

                                                                        CGCTACGGCATCATCAGTCGCCAGGCGGTGATAGCCGAAAATATCCCTGGCGGGTTTCCATCGATGCAAACGCTTTGTCGAAGTATGGAAGACT                      <  SRR4302536.5596078/94‑1 (MQ=60)

                                                                        CGCTACGGCATCATCAGTCGCCAGGCGGTGATAGCCGAAAATATCCCTGGCGGGTTTCCATCGATGCAAACGCTTTGTCGAAGTATGGAAGACT                      <  SRR4302536.6779451/94‑1 (MQ=60)

                                                                        CGCGACGGCAGCATCAGGCGCCAGGCCGTGATAGCCGAAAATATCCCTGGCGGGTTGCCATCGATGCAAACGCTTTGTCGAAGTATGGAAGACT                      <  SRR4302536.2572216/94‑1 (MQ=60)

                                                                          CTACGGCATCATCAGTCGCCAGGCGGTGATAGCCGAAAATATCCCTGGCGGGTTTCCATCGATGCCAACGCTTTGTCGAAATATTGAAGACTCC                    >  SRR4302536.2364550/1‑94 (MQ=60)

                                                                          CTACGGCATCATCAGTCGCCAGGCGGTGATAGCCGAAAATATCCCTGGCGGGTTTCCATCGATGCAAACGCTTTGTCGAAGTATGGAAGACTCC                    >  SRR4302536.4642995/1‑94 (MQ=60)

                                                                             CGGCATCATCAGTCGCCAGGCGGTGATAGCCGAAAATATCCCTGGCGGGTTTCCATCGATGCAAACGCTTTGTCGAAGTATGGAAGACTCCGGG                 >  SRR4302536.5211792/1‑94 (MQ=60)

                                                                             CGGCATCATCAGTCGCCAGGCGGTGATAGCCGAAAATATCCCTGGCGGGTTTCCATCGATGCAAACGCTTTGTCGAAGTATGGAAGACTCCGGG                 <  SRR4302536.6080276/94‑1 (MQ=60)

                                                                             CGGCATCATCAGTCGCCAGGCGGTGATAGCCGAAAATATCCCTGGCGGGTTTCCATCGATGCAAACGCTTTGTCGAAGTATGGAAGACTCCGGG                 <  SRR4302536.4973957/94‑1 (MQ=60)

                                                                              GGCATCATCAGTCGCCAGGCGGTGATAGCCGAAAATATCCCTGGCGGGGTTCCATCGATGCAAACGCTTTGTCGAAGTATGGAAGACTCCGGGC                >  SRR4302536.6384810/1‑94 (MQ=60)

                                                                                cattcTCAGTCGCCAGGCGGTGATAGCCGAAAATATCCCTGGCGGGTTTCCATCGATGCAAACGCTTTGTCGAAGTATGGAAGACTCCGGGCGA              <  SRR4302536.4318101/89‑1 (MQ=60)

                                                                                CATGATCAGTCGCCAGGCGGTGATAGCCGAAAATATCCCTGGCGGGTTTCCATCGATGCAAACGCTTTGTCGAAGTATGGAAGACTCCGGGCGA              <  SRR4302536.6691265/94‑1 (MQ=60)

                                                                                CATCATCAGTCGCCAGGCGGTGATAGCCGAAAATATCCCTGGCGGGTTTCCATCGATGCAAACGCTTTGTCGAAGTATGGAAGACTCCGGGCGA              >  SRR4302536.900309/1‑94 (MQ=60)

                                                                                 ATCATCAGTCGCCAGGCGGTGATAGCCGAAAATATCCCTGGCGGGTTTCCATCGATGCAAACGCTTTGTCGAAGTATGGAAGACTCCGGGCGAA             >  SRR4302536.5513529/1‑94 (MQ=60)

                                                                                 ATCATCAGTCGCCAGGCGGTGATAGCCGAAAATATCCCTGGCGGGTTTCCATCGATGCAAACGCTTTGTCGAAGTATGGAAGACTCCGGGCGAA             >  SRR4302536.4005172/1‑94 (MQ=60)

                                                                                  TCATCAGTCGCCAGGCGGTGATAGCCGAAAATATCCCTGGCGGGTTTCCATCGATGCAAACGCTTTGTCGAAGTATGGAAGACTCCGGGCGAAT            <  SRR4302536.6509488/94‑1 (MQ=60)

                                                                                   CATCAGTCGCCAGGCGGTGATAGCCGAAAATATCCCTGGCGGGGTTCCATCGATGCAAACGCTTTGTCGAAGTATGGCAGACTCCGGGCGAATT           >  SRR4302536.2896974/1‑94 (MQ=60)

                                                                                    ATCAGTCGCCAGGCGGTGATAGCCGAAAATATCCCTGGCGGGTTTCCATCGATGCAAACGCTTTGTCGAAGTATGGAAGACTCCGGGCGAATTA          >  SRR4302536.1062675/1‑94 (MQ=60)

                                                                                    ATCAGTCGCCAGGCGGTGATAGCCGAAAATATCCCTGGCGGGTTTCCATCGATGCAAACGCTTTGTCGAAGTATGGAAGACTCCGGGCGAATTA          >  SRR4302536.4048938/1‑94 (MQ=60)

                                                                                     TCAGTCGCCAGGCGGTGATAGCCGAAAATATCCCTGGCTGGTTTCCATCGATGAAAACGCTTTGTCGAAGTATGGAAGACTCCGGGCGAATTAT         <  SRR4302536.2846183/94‑1 (MQ=60)

                                                                                      CAGTCGCCAGGCGGTGATAGCCGAAAATATCCCTGGCGGGTTTCCATCGATGCAAACGCTTTGTCGAAGTATGGAAGACTCCGGGCGAATTATG        <  SRR4302536.5926509/94‑1 (MQ=60)

                                                                                      CAGTCGCCAGGCGGTGATAGCCGAAAATATCCCTGGCGGGTTTCCATCGATGCAAACGCTTTGTCGAAGTATGGAAGACTCCGGGCGAATTATG        <  SRR4302536.2984163/94‑1 (MQ=60)

                                                                                      CAGTCGCCAGGCGGTGATAGCCGAAAATATCCCTGGCGGGTTTCCATCGATGCAAACGCTTTGTCGAAGTATGGAAGACTCCGGGCGAATTATG        >  SRR4302536.958248/1‑94 (MQ=60)

                                                                                       AGTCGCCAGGCGGTGATAGCCGAAAATATCCCTGGCGGGTTTCCATCGATGCAAACGCTTTGTCGAAGTATGGAAGACTCCGGGCGAATTATGC       <  SRR4302536.6659424/94‑1 (MQ=60)

                                                                                       AGTCGCCAGGCGGTGATAGCCGAAAATATCCCTGGCGGGTTTCCATCGATGCAAACGCTTTGTCGAAGTATGGAAGACTCCGGGCGAATTATGC       <  SRR4302536.3322138/94‑1 (MQ=60)

                                                                                       AGTCGCCAGGCGGTGATAGCCGAAAATATCCCTGGCGGGTTTCCATCGATGCAAACGCTTTGTCGAAGTATGGAAGACTCCGGGCGAATTATGC       >  SRR4302536.1582266/1‑94 (MQ=60)

                                                                                       AGTCGCCAGGCGGTGATAGCCGAAAATATCCCTGGCGGGTTTCCATCGATGCAAACGCTTTGTCGAAGTATGGAAGACTCCGGGCGAATTATGC       <  SRR4302536.1420723/94‑1 (MQ=60)

                                                                                        GTCGCCAGGCGGTGATAGCCGAAAATATCCCTGGCGGGTTTCCATCGATGCAAACGCTTTGTCGAAGTATGGAAGACTCCGGGCGAATTATGCG      <  SRR4302536.3785871/94‑1 (MQ=60)

                                                                                           GCCAGGCGGTGATAGCCGAAAATATCCCTGGCGGGTTTCCATCGATGCAAACGCTTTGTCGAAGTATGGAAGACTCCGGGCGAATTATGCGAGG   >  SRR4302536.5736707/1‑94 (MQ=60)

                                                                                           GCCAGGCGGTGATAGCCGAAAATATCCCTGGCGGGTTTCCATCGATGCAAACGCTTTGTCGAAGTATGGAAGACTCCGGGCGAATTATGCGAGG   <  SRR4302536.4875899/94‑1 (MQ=60)

                                                                                           GCCAGGCGGTGATAGCCGAAAATATCCCTGGCGGGTTTCCATCGATGCAAACGCTTTGTCGAAGGATGGAAGACTCCGGGCGAATGATGCGAGG   >  SRR4302536.4889009/1‑94 (MQ=60)

                                                                                            CCAGGCGGTGATAGCCGAAAATATCCCTGGCGGGTTTCCATCGATGCAAACGCTTTGTCGAAGTATGGAAGACTCCGGGCGAATTATGCGAGGT  <  SRR4302536.6850069/94‑1 (MQ=60)

                                                                                            CCAGGCGGTGATAGCCGAAAATATCCCTGGCGGGTTTCCATCGATGCAAACGCTTTGTCGAAGTATGGAAGACTCCGGGCGAATTATGCGAGGT  >  SRR4302536.690123/1‑94 (MQ=60)

TGGTCGTTATTGCAGGTGGAGCCACTAAACGATACCGAAAGGATGCTGGCGCTGGCGGAAAATATGCTCGACCGCTACGGCATCATCAGTCGTCAGGCGGTGATAGCCGAAAATATCCCTGGCGGGTTTCCATCGATGCAAACGCTTTGTCGAAGTATGGAAGACTCCGGGCGAATTATGCGAGGT  >  NC_000913/1731083‑1731268

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`