Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1475	266.7	13469680	98.2%	13227225	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,749,776	T→C	A693A (GCA→GCG)	b1673 ←	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,749,776	0	T	C	100.0%	841.4 / NA	258	A693A (GCA→GCG)	b1673	hypothetical protein
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (146/112); total (146/112)

Only 100 of 272 total aligned reads displayed.

GCCTCGTCAACTTCGCTGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCAGTAGATTGTGTGCTGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAGCTGTGGGTCCCAGCCCATTTCTTT  >  NC_000913/1749687‑1749865

gCCTCGTCAACTTCGCTGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTgccgcc                                                                                        >  1:5872051/1‑93 (MQ=255)

 ccTCGTCACCTTCGCTGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCa                                                                                       >  1:6529307/1‑93 (MQ=255)

 ccTCGTCAACTTCGCTGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCa                                                                                       >  2:3075106/1‑93 (MQ=255)

     gTCAACTTCGCTGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATc                                                                                   >  1:4487678/1‑93 (MQ=255)

       cAACTTCGCTGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATcgg                                                                                 <  2:4426309/93‑1 (MQ=255)

        aaCTTCGCTGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATcggc                                                                                <  2:2751419/93‑1 (MQ=255)

        aaCTTCGCTGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATcggc                                                                                <  1:1551112/93‑1 (MQ=255)

         aCTTCGCTGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCATGCGGTCGATTGTGTGCCTCCCGATccgcc                                                                               >  1:1999744/1‑92 (MQ=255)

          cTTCGCTGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATcggcgg                                                                              <  1:3496368/93‑1 (MQ=255)

           ttCGCTGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCggcggc                                                                             <  2:226710/93‑1 (MQ=255)

           ttCGCTGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCggcggc                                                                             <  2:1305901/93‑1 (MQ=255)

           ttCGCTGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCggcggc                                                                             >  1:1428092/1‑93 (MQ=255)

             cgcgGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCaa                                                                           <  1:1587828/93‑1 (MQ=255)

               cTGACTTTCGCTAACGGCAATTCATCCTGATAGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAata                                                                         >  1:1653437/1‑93 (MQ=255)

                 gACTTTCGCTAACGGCAATTCATCCTGATGGTTTATCTTACCCATTCCTTACGCAGGCGGTAGCTTGTGTGCCGCCAGATCGGCGGCAATATc                                                                       >  1:2111658/1‑93 (MQ=255)

                 gACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAatatt                                                                       >  1:1382171/1‑92 (MQ=255)

                 gACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATc                                                                       >  1:500340/1‑93 (MQ=255)

                 gACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATc                                                                       >  2:1879371/1‑93 (MQ=255)

                  aCTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCt                                                                      >  1:4220487/1‑93 (MQ=255)

                  aCTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCt                                                                      <  1:2323663/93‑1 (MQ=255)

                  aCTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCt                                                                      <  2:4724864/93‑1 (MQ=255)

                   cTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCtt                                                                     >  2:4469808/1‑93 (MQ=255)

                         cTAACGGCAATTCATCCTGATGGATCATCTTACCCATTCCTTACGCGGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGcc                                                               >  1:5368967/1‑93 (MQ=255)

                          tAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGccc                                                              <  2:3369207/93‑1 (MQ=255)

                           aaCGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGcccc                                                             >  2:3931821/1‑93 (MQ=255)

                           aaCGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGcccc                                                             <  1:465713/93‑1 (MQ=255)

                            aCGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCa                                                            <  1:3981052/93‑1 (MQ=255)

                            aCGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCa                                                            <  2:5757312/93‑1 (MQ=255)

                             cGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAg                                                           >  1:476209/1‑93 (MQ=255)

                              ggCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGa                                                          >  2:4870382/1‑93 (MQ=255)

                               gCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGGAATATCTTCCAGCCCCAGAc                                                         >  2:2380994/1‑93 (MQ=255)

                                cAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGGAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCCGCCCCAGACg                                                        >  1:5453456/1‑93 (MQ=255)

                                 aaTTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGc                                                       >  2:2684121/1‑93 (MQ=255)

                                  aTTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCt                                                      <  2:3424818/93‑1 (MQ=255)

                                      aTCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCaa                                                  <  1:4285665/93‑1 (MQ=255)

                                      aTCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCaa                                                  >  2:1347474/1‑93 (MQ=255)

                                       tCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCTGCAATATCTTCCAGCCCCAGACGCTGCAAt                                                 >  1:5233292/1‑93 (MQ=255)

                                       tCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAAt                                                 >  1:3742626/1‑93 (MQ=255)

                                       tCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAAt                                                 >  1:733140/1‑93 (MQ=255)

                                       tCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAAt                                                 >  2:6451526/1‑93 (MQ=255)

                                       tCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAAt                                                 >  2:2862695/1‑93 (MQ=255)

                                        ccTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGAAATATCTTCCAGCCCCAGACGCTGCAATg                                                >  2:5609341/1‑93 (MQ=255)

                                         cTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGt                                               >  1:630458/1‑93 (MQ=255)

                                          tGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGtt                                              >  1:3268401/1‑93 (MQ=255)

                                          tGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGtt                                              >  1:2873400/1‑93 (MQ=255)

                                          tGATGGTTCATCTTACCCATGCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGtt                                              <  1:4046508/93‑1 (MQ=255)

                                           gATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGttt                                             >  1:529514/1‑93 (MQ=255)

                                            aTGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCGATGTTTc                                            >  2:5864865/1‑93 (MQ=255)

                                              ggTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTcgc                                          <  2:4786108/93‑1 (MQ=255)

                                               gTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTcgcg                                         <  2:5215657/93‑1 (MQ=255)

                                                ttCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCgg                                        <  2:826170/93‑1 (MQ=255)

                                                  cATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGt                                      >  2:4988512/1‑93 (MQ=255)

                                                  cATCTTACCCATTCCGTACGCAGGCGGTAGATTGTGTCCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGt                                      <  1:1047553/93‑1 (MQ=255)

                                                     cTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTgg                                   <  1:2252125/93‑1 (MQ=255)

                                                      ttACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGa                                  <  2:383144/93‑1 (MQ=255)

                                                      ttACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGa                                  >  2:3148078/1‑93 (MQ=255)

                                                       tACCCATTCCTTACGCAGGCTGTAGATTGTGTGCCTCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGAc                                 <  2:1128458/93‑1 (MQ=255)

                                                       tACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGaa                                 >  2:423808/1‑92 (MQ=255)

                                                       tACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGAc                                 <  2:3295815/93‑1 (MQ=255)

                                                       tACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGAc                                 <  2:5648329/93‑1 (MQ=255)

                                                       tACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGAc                                 >  1:3052389/1‑93 (MQ=255)

                                                        aCCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACa                                >  1:6100194/1‑93 (MQ=255)

                                                        aCCCATTCCTTACGCAGGCGGTAGATTGTATGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACa                                >  2:3808397/1‑93 (MQ=255)

                                                          ccATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAAc                              >  1:6428810/1‑93 (MQ=255)

                                                          ccATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAAc                              >  2:1583350/1‑93 (MQ=255)

                                                           cATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAAcc                             <  2:5990112/93‑1 (MQ=255)

                                                            aTTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCTCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCa                            >  2:2971046/1‑93 (MQ=255)

                                                             ttCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCaa                           >  2:2249659/1‑93 (MQ=255)

                                                              tCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAg                          >  1:6387274/1‑93 (MQ=255)

                                                               ccTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAGc                         <  2:1674513/93‑1 (MQ=255)

                                                                cTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAGCt                        >  1:4388708/1‑93 (MQ=255)

                                                                  tACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAGCtgt                      <  2:198428/93‑1 (MQ=255)

                                                                  tACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAGCtgt                      <  1:4859305/93‑1 (MQ=255)

                                                                   aCGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGGCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAGCtgtg                     >  1:6028613/1‑93 (MQ=255)

                                                                   aCGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAGCtgtg                     <  1:5642723/93‑1 (MQ=255)

                                                                     gcaggcggTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCCGACGCTGCAATGTTTCGCGGGTTGGACAACCAAGCTGTggg                   >  1:483270/1‑93 (MQ=255)

                                                                      caggcggTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAGCTGTGGGt                  >  1:2690429/1‑93 (MQ=255)

                                                                      caggcggTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAGCTGTGGGt                  <  1:189411/93‑1 (MQ=255)

                                                                      caggcggTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAGCTGTGGGt                  <  2:647416/93‑1 (MQ=255)

                                                                       aggcggTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAGCTGTGGGTc                 >  1:5517488/1‑93 (MQ=255)

                                                                        ggcggTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGCCGCTGCAATGTTTCGCGGGGTGGACAACCAAGCTGTGGGTcc                >  2:2052033/1‑93 (MQ=255)

                                                                        ggcggTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAGCTGTGGGTcc                >  1:30005/1‑93 (MQ=255)

                                                                         gcggTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAGCTGTGGGTccc               <  1:4197685/90‑1 (MQ=255)

                                                                         gcggTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAGCTGTGGGTccc               <  1:2158693/90‑1 (MQ=255)

                                                                          cggTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAGCTGTGGGTCCCa              <  1:250371/91‑1 (MQ=255)

                                                                           ggTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAGCTGTGGGTCCCAg             >  2:3629617/2‑93 (MQ=255)

                                                                               gATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAGCTGTGGGTCCCAGCCCa         <  2:5400955/93‑1 (MQ=255)

                                                                               gATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAGCTGTGGGTCCCAGCCCa         >  2:3488914/1‑93 (MQ=255)

                                                                                aTTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAGCTGTGGGTCCCAGCCCAt        >  2:4573399/1‑93 (MQ=255)

                                                                                aTTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAGCTGTGGGTCCCAGCCCAt        <  1:67765/93‑1 (MQ=255)

                                                                                aTTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAGCTGTGGGTCCCAGCCCAt        <  1:1759470/93‑1 (MQ=255)

                                                                                aTTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAGCTGTGGGTCCCAGCCCAt        <  1:1348034/93‑1 (MQ=255)

                                                                                 ttGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAGCTGTGGGTCCCAGCCCAtt       <  1:4509697/93‑1 (MQ=255)

                                                                                 ttGTCTGCCGCCAGAGCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAGCTGTGGGTCCCAGCCCAtt       <  1:1162588/93‑1 (MQ=255)

                                                                                   gtgtgCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAGCTGTGGGTCCCAGCCCATTTc     <  1:3587454/93‑1 (MQ=255)

                                                                                   gtgtgCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAGCTGTGGGTCCCAGCCCATTTc     >  2:6729249/1‑93 (MQ=255)

                                                                                    tgtgCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAGCTGTGGGTCCCAGCCCATTTCt    <  1:3884867/93‑1 (MQ=255)

                                                                                    tgtgCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAGCTGTGGGTCCCAGCCCATTTCt    >  1:1140592/1‑93 (MQ=255)

                                                                                     gtgCCGCGAGATCGGCGTCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAGCTGTGGGTCCCAGCCCATTTCtt   <  2:1887866/93‑1 (MQ=255)

                                                                                     gtgCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAGCTGTGGGTCCCAGCCCATTTCtt   <  1:994850/93‑1 (MQ=255)

GCCTCGTCAACTTCGCTGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCAGTAGATTGTGTGCTGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAGCTGTGGGTCCCAGCCCATTTCTTT  >  NC_000913/1749687‑1749865

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 19 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CTTCGCCTCGTCAACTTCGCTGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCAGTAGATTGTGTGCTGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAGCTGTGGGTCCCAGCCCATTTCTTTGTAG  >  NC_000913/1749683‑1749869

CTTCGCCTCGTCAACTTCGCTGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCC                                                                                               >  SRR4302536.5466366/1‑94 (MQ=60)

CTTCGCCTCGTCAACTTCGCTGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACACAGGCGGTAGATTGTGTGCC                                                                                               <  SRR4302536.6707627/94‑1 (MQ=60)

 TTCGCCTCGTCAACTTCGCTGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCG                                                                                              <  SRR4302536.3227945/94‑1 (MQ=60)

   CGCCTCGTCAACTTCGCTGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCC                                                                                            >  SRR4302536.6557577/1‑94 (MQ=60)

   CGCCTCGTCAACTTCGCTGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCC                                                                                            >  SRR4302536.2700293/1‑94 (MQ=60)

   CGCCTCGTCAACTTCGCTGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCC                                                                                            >  SRR4302536.6047010/1‑94 (MQ=60)

    GCCTCGTCACCTTCGCTGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCA                                                                                           >  SRR4302536.6723787/1‑94 (MQ=60)

     CCTCGTCAACTTCGCTGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAG                                                                                          >  SRR4302536.4122934/1‑94 (MQ=60)

       TCGTCAACTTCGCTGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGAT                                                                                        <  SRR4302536.1713157/94‑1 (MQ=60)

        CGTCAACTTCGCTGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATC                                                                                       >  SRR4302536.4233179/1‑94 (MQ=60)

        CGTCAACTTCGCTGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATC                                                                                       >  SRR4302536.4622445/1‑94 (MQ=60)

        CGTCAACTTCGCTGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATC                                                                                       <  SRR4302536.3856217/94‑1 (MQ=60)

           CAACTTCGCTGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGC                                                                                    >  SRR4302536.4660876/1‑94 (MQ=60)

            AACTTCGCTGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCG                                                                                   >  SRR4302536.5393871/1‑94 (MQ=60)

            AACTTCGCTGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCG                                                                                   <  SRR4302536.1596696/94‑1 (MQ=60)

            AACTTCGCTGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCG                                                                                   <  SRR4302536.6423779/94‑1 (MQ=60)

            AACTTCGCTGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCG                                                                                   <  SRR4302536.1179002/94‑1 (MQ=60)

             ACTTCGCTGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGG                                                                                  >  SRR4302536.6587059/1‑94 (MQ=60)

              CTTCGCTGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGC                                                                                 >  SRR4302536.1470511/1‑94 (MQ=60)

              CTTCGCTGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGC                                                                                 <  SRR4302536.3600694/94‑1 (MQ=60)

                 CGCTGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAAT                                                                              >  SRR4302536.5521425/1‑94 (MQ=60)

                 CGCTGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAAT                                                                              <  SRR4302536.3351650/94‑1 (MQ=60)

                 CGCGGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAAT                                                                              <  SRR4302536.1634284/94‑1 (MQ=60)

                  GCTGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATA                                                                             <  SRR4302536.5336607/94‑1 (MQ=60)

                  GCTGACTTTCGCTAACGGCAATTCATCCTGATAGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATA                                                                             >  SRR4302536.1701478/1‑94 (MQ=60)

                    TGACTTTCGCTAACGGCAATTCATCCTGATGGTTTATCTTACCCATTCCTTACGCAGGCGGTAGCTTGTGTGCCGCCAGATCGGCGGCAATATC                                                                           >  SRR4302536.2175121/1‑94 (MQ=60)

                    TGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATT                                                                           >  SRR4302536.1423347/1‑94 (MQ=60)

                    TGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATC                                                                           >  SRR4302536.513234/1‑94 (MQ=60)

                    TGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTGACCCATTCCTTACGCAGGCGGAAGATTGTGTGCCGCCAGATCGGCGGCAATATC                                                                           <  SRR4302536.1570841/94‑1 (MQ=60)

                     GACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCT                                                                          >  SRR4302536.4346048/1‑94 (MQ=60)

                     GACTTTCGCTAACGGCAATTCATCCTGATGATTCATCTTACCCATTCCTTACGCAGGGGGTAGATTGTGTGCCTCCAGATCGGCGGCAATATCT                                                                          <  SRR4302536.5533189/94‑1 (MQ=60)

                      ACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTT                                                                         >  SRR4302536.1401248/1‑94 (MQ=60)

                      ACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTT                                                                         <  SRR4302536.2394174/94‑1 (MQ=60)

                       CTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTC                                                                        >  SRR4302536.428152/1‑94 (MQ=60)

                       CTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTC                                                                        <  SRR4302536.5947436/94‑1 (MQ=60)

                        TTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCC                                                                       <  SRR4302536.3665537/94‑1 (MQ=60)

                          TCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAG                                                                     <  SRR4302536.1425119/94‑1 (MQ=60)

                           CGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGC                                                                    >  SRR4302536.2504249/1‑94 (MQ=60)

                           CGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGC                                                                    <  SRR4302536.4126701/94‑1 (MQ=60)

                           CGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGC                                                                    <  SRR4302536.864905/94‑1 (MQ=60)

                           CGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGC                                                                    <  SRR4302536.753895/94‑1 (MQ=60)

                            GCTAACGGCAATTCATCCTGATGGATCATCTTACCCATTCCTTACGCGGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCC                                                                   >  SRR4302536.5529111/1‑94 (MQ=60)

                             CTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCC                                                                  >  SRR4302536.4537816/1‑94 (MQ=60)

                              TAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCC                                                                 >  SRR4302536.1777116/1‑94 (MQ=60)

                               AACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCC                                                                >  SRR4302536.5709524/1‑94 (MQ=60)

                               AACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCA                                                                >  SRR4302536.6587135/1‑94 (MQ=60)

                               AACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCA                                                                <  SRR4302536.1449800/94‑1 (MQ=60)

                               AACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCA                                                                <  SRR4302536.477868/94‑1 (MQ=60)

                                ACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAG                                                               <  SRR4302536.4099237/94‑1 (MQ=60)

                                ACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAG                                                               >  SRR4302536.488603/1‑94 (MQ=60)

                                ACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAC                                                               >  SRR4302536.2013605/1‑94 (MQ=60)

                                  GGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGAC                                                             >  SRR4302536.2283754/1‑94 (MQ=60)

                                   GCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGGAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCCGCCCCAGACG                                                            >  SRR4302536.5616559/1‑94 (MQ=60)

                                    CAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGC                                                           >  SRR4302536.1622517/1‑94 (MQ=60)

                                      ATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTG                                                         >  SRR4302536.5678250/1‑94 (MQ=60)

                                          ATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCTGCAATATCTTCCAGCCCCAGACGCTGCAAT                                                     >  SRR4302536.5389228/1‑94 (MQ=60)

                                          ATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAAT                                                     <  SRR4302536.1358392/94‑1 (MQ=60)

                                          ATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAAT                                                     <  SRR4302536.4413664/94‑1 (MQ=60)

                                          ATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAAT                                                     >  SRR4302536.2284981/1‑94 (MQ=60)

                                          ATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAAT                                                     >  SRR4302536.754644/1‑94 (MQ=60)

                                          ATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAAT                                                     >  SRR4302536.3854513/1‑94 (MQ=60)

                                           TCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATG                                                    >  SRR4302536.2620499/1‑94 (MQ=60)

                                            CCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGT                                                   >  SRR4302536.649125/1‑94 (MQ=60)

                                            CCTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGT                                                   >  SRR4302536.1511573/1‑94 (MQ=60)

                                             CTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTT                                                  >  SRR4302536.3364356/1‑94 (MQ=60)

                                             CTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTT                                                  <  SRR4302536.5564652/94‑1 (MQ=60)

                                             CTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTT                                                  >  SRR4302536.2958238/1‑94 (MQ=60)

                                             CTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTT                                                  >  SRR4302536.3105747/1‑94 (MQ=60)

                                             CTGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTT                                                  >  SRR4302536.5111395/1‑94 (MQ=60)

                                              TGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTT                                                 >  SRR4302536.467354/1‑94 (MQ=60)

                                              TGATGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTT                                                 >  SRR4302536.543061/1‑94 (MQ=60)

                                              TGATGGTTCATCTTACCCATGCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTT                                                 <  SRR4302536.4166460/94‑1 (MQ=60)

                                                 TGGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGC                                              >  SRR4302536.1635744/1‑94 (MQ=60)

                                                  GGTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCG                                             >  SRR4302536.3763172/1‑94 (MQ=60)

                                                   GTTCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGG                                            >  SRR4302536.1121817/1‑94 (MQ=60)

                                                     TCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGT                                          >  SRR4302536.2891742/1‑94 (MQ=60)

                                                     TCATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGT                                          <  SRR4302536.3686178/94‑1 (MQ=60)

                                                      CATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTT                                         >  SRR4302536.5920741/1‑94 (MQ=60)

                                                      CATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTT                                         <  SRR4302536.5003316/94‑1 (MQ=60)

                                                      CATCTTACCCATTCCGTACGCAGGCGGTAGATTGTGTCCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTT                                         <  SRR4302536.1078733/94‑1 (MQ=60)

                                                       ATCTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTG                                        <  SRR4302536.2109619/94‑1 (MQ=60)

                                                         CTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGA                                      <  SRR4302536.2320316/94‑1 (MQ=60)

                                                         CTTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGA                                      >  SRR4302536.2502609/1‑94 (MQ=60)

                                                          TTACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGAC                                     >  SRR4302536.3142041/1‑94 (MQ=60)

                                                           TACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACA                                    >  SRR4302536.6282072/1‑94 (MQ=60)

                                                           TACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACA                                    >  SRR4302536.6176420/1‑94 (MQ=60)

                                                            ACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAA                                   <  SRR4302536.1944711/94‑1 (MQ=60)

                                                            ACCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAA                                   >  SRR4302536.5748789/1‑94 (MQ=60)

                                                             CCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAAC                                  >  SRR4302536.308585/1‑94 (MQ=60)

                                                             CCCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAAC                                  >  SRR4302536.6620943/1‑94 (MQ=60)

                                                              CCATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACC                                 <  SRR4302536.6279764/94‑1 (MQ=60)

                                                               CATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCA                                <  SRR4302536.4544591/94‑1 (MQ=60)

                                                               CATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAAACA                                >  SRR4302536.2069327/1‑94 (MQ=60)

                                                                ATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAA                               >  SRR4302536.1911668/1‑94 (MQ=60)

                                                                ATTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAA                               >  SRR4302536.1363080/1‑94 (MQ=60)

                                                                 TTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAG                              >  SRR4302536.4431400/1‑94 (MQ=60)

                                                                 TTCCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAG                              >  SRR4302536.6577840/1‑94 (MQ=60)

                                                                   CCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAGCT                            >  SRR4302536.6305852/1‑94 (MQ=60)

                                                                   CCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAGCT                            >  SRR4302536.4519789/1‑94 (MQ=60)

                                                                   CCTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAAACAAGCT                            >  SRR4302536.4995260/1‑94 (MQ=60)

                                                                    CTTACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAGCTG                           <  SRR4302536.6678506/94‑1 (MQ=60)

                                                                     TTACGCAGGCGGTGGATTGTGTGCCGCCAGATAGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAGCTGT                          >  SRR4302536.5503964/1‑94 (MQ=60)

                                                                      TACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGGCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAGCTGTG                         >  SRR4302536.6208363/1‑94 (MQ=60)

                                                                      TACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAGCTGTG                         >  SRR4302536.681861/1‑94 (MQ=60)

                                                                      TACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAGCTGTG                         <  SRR4302536.5005543/94‑1 (MQ=60)

                                                                      TACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAGCTGTG                         <  SRR4302536.3267541/94‑1 (MQ=60)

                                                                      TACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAGCTGTG                         <  SRR4302536.486521/94‑1 (MQ=60)

                                                                       ACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAGCTGTGG                        <  SRR4302536.1598620/94‑1 (MQ=60)

                                                                       ACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAGCTGTGG                        <  SRR4302536.4931644/94‑1 (MQ=60)

                                                                       ACGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAGCTGTGG                        <  SRR4302536.5810371/94‑1 (MQ=60)

                                                                        CGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCCGACGCTGCAATGTTTCGCGGGTTGGACAACCAAGCTGTGGG                       >  SRR4302536.495829/1‑94 (MQ=60)

                                                                        CGCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAGCTGTGGG                       <  SRR4302536.4442051/94‑1 (MQ=60)

                                                                         GCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAGCTGTGGGT                      <  SRR4302536.462731/94‑1 (MQ=60)

                                                                         GCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAGCTGTGGGT                      >  SRR4302536.2770748/1‑94 (MQ=60)

                                                                         GCAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAGCTGTGGGT                      <  SRR4302536.2217522/94‑1 (MQ=60)

                                                                          CAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAGCTGTGGGTC                     <  SRR4302536.194409/94‑1 (MQ=60)

                                                                          CAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAGCTGTGGGTC                     >  SRR4302536.5682029/1‑94 (MQ=60)

                                                                          CAGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGGTGGACAACCAAGCTGTGGGTC                     >  SRR4302536.2320587/1‑94 (MQ=60)

                                                                           AGGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAGCTGTGGGTCC                    >  SRR4302536.30830/1‑94 (MQ=60)

                                                                            ggcgtTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACACCCAAGCTGTGGGTCCC                   <  SRR4302536.4149299/89‑1 (MQ=60)

                                                                            GGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTTCAGCCCCAGAGGCTGGAATGTTTCGCGGGTTGGACAACCAAGCTGCGGGGCCC                   >  SRR4302536.3541582/1‑94 (MQ=60)

                                                                            GGCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAGCTGTGGGTCCC                   <  SRR4302536.2216597/94‑1 (MQ=60)

                                                                             GCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAGCTGTGGGTCCCA                  <  SRR4302536.2223610/94‑1 (MQ=60)

                                                                             GCGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAGCTGTGGGTCCCA                  <  SRR4302536.4322450/94‑1 (MQ=60)

                                                                              CGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAGCTGTGGGTCCCAG                 >  SRR4302536.6729788/1‑94 (MQ=60)

                                                                              CGGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAGCTGTGGGTCCCAG                 <  SRR4302536.257053/94‑1 (MQ=60)

                                                                               GGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAGCTGTGGGTCCCAGC                >  SRR4302536.3734914/1‑94 (MQ=60)

                                                                                 TAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAGCTGTGGGTCCCAGCCC              >  SRR4302536.306386/1‑94 (MQ=60)

                                                                                  AGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACCACCAAGCTGTGGGTCCCAGCCCT             >  SRR4302536.5311386/1‑94 (MQ=60)

                                                                                  AGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAGCTGTGGGTCCCAGCCCA             <  SRR4302536.6083801/94‑1 (MQ=60)

                                                                                  AGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAGCTGTGGGTCCCAGCCCA             >  SRR4302536.4823715/1‑94 (MQ=60)

                                                                                   GATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAGCTGTGGGTCCCAGCCCAT            <  SRR4302536.4378358/94‑1 (MQ=60)

                                                                                    ATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAGCTGTGGGTCCCAGCCCATT           <  SRR4302536.6513686/94‑1 (MQ=60)

                                                                                    ATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAGCTGTGGGTCCCAGCCCATT           <  SRR4302536.69611/94‑1 (MQ=60)

                                                                                    ATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAGCTGTGGGTCCCAGCCCATT           <  SRR4302536.1388216/94‑1 (MQ=60)

                                                                                    ATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAGCTGTGGGTCCCAGCCCATT           >  SRR4302536.4338199/1‑94 (MQ=60)

                                                                                    ATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAGCTGTGGGTCCCAGCCCATT           >  SRR4302536.3871353/1‑94 (MQ=60)

                                                                                    ATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAGCTGTGGGTCCCAGCCCATT           <  SRR4302536.1812197/94‑1 (MQ=60)

                                                                                    ATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAGCTGTGGGTCCCAGCCCATT           <  SRR4302536.4355183/94‑1 (MQ=60)

                                                                                     TTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAGCTGTGGGTCCCAGCCCATTT          <  SRR4302536.2963847/94‑1 (MQ=60)

                                                                                     TTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAGCTGTGGGTCCCAGCCCATTT          <  SRR4302536.4644983/94‑1 (MQ=60)

                                                                                     TTGTCTGCCGCCAGAGCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAGCTGTGGGTCCCAGCCCATTT          <  SRR4302536.1197580/94‑1 (MQ=60)

                                                                                      TGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAGCTGTGGGTCCCAGCCCATTTC         <  SRR4302536.4090282/94‑1 (MQ=60)

                                                                                       GTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAGCTGTGGGTCCCAGCCCATTTCT        <  SRR4302536.5008610/94‑1 (MQ=60)

                                                                                       GTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAGCTGTGGGTCCCAGCCCATTTCT        >  SRR4302536.1174891/1‑94 (MQ=60)

                                                                                       GTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAGCTGTGGGTCCCAGCCCATTTCT        <  SRR4302536.3694758/94‑1 (MQ=60)

                                                                                        TGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAGCTGTGGGTCCCAGCCCATTTCTT       <  SRR4302536.4000421/94‑1 (MQ=60)

                                                                                        TGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAGCTGTGGGTCCCAGCCCATTTCTT       >  SRR4302536.1179536/1‑94 (MQ=60)

                                                                                         GTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAGCTGTGGGTCCCAGCCCATTTCTTT      <  SRR4302536.1024203/94‑1 (MQ=60)

                                                                                          TGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAGCTGTGGGTCCCAGCCCATTTCTTTT     >  SRR4302536.1584064/1‑94 (MQ=60)

                                                                                          TGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAGCTGTGGGTCCCAGCCCATTTCTTTG     >  SRR4302536.4101882/1‑94 (MQ=60)

                                                                                          TGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAGCTGTGGGTCCCAGCCCATTTCTTTG     <  SRR4302536.729316/94‑1 (MQ=60)

                                                                                             CGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAGCTGTGGGTCCCAGCCCATTTCTTTGTAG  >  SRR4302536.4941353/1‑94 (MQ=60)

CTTCGCCTCGTCAACTTCGCTGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCAGTAGATTGTGTGCTGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAGCTGTGGGTCCCAGCCCATTTCTTTGTAG  >  NC_000913/1749683‑1749869

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`