Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1475 |
266.7 |
13469680 |
98.2% |
13227225 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,759,194 |
C→T |
A208T (GCA→ACA) |
ynhC ← |
hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,759,194 | 0 | C | T | 100.0%
| 822.7
/ NA
| 222 | A208T (GCA→ACA) | ynhC | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (109/113); total (109/113) |
Only 100 of 226 total aligned reads displayed.
CTCAGCCAGCAACAAATCGTTATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGCGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCACCGTTGCTTCGGCACCTTCCG > NC_000913/1759105‑1759283
|
agccagcAACAAATCGTTATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGtt > 1:6180640/1‑93 (MQ=255)
gccagcAACAAATCGTTATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTg > 1:3444096/1‑93 (MQ=255)
gccagcAACAAATCGTTATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTg > 2:4726133/1‑93 (MQ=255)
gcagcAACAAATCGTTATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGa < 2:2113815/92‑1 (MQ=255)
ctagcAACAAATCGTTATGAGCAAAGTGATAACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGa < 1:6617097/91‑1 (MQ=255)
cagcAACAAATCGTTATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGAt < 1:5789547/93‑1 (MQ=255)
caacaaATCGTTATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGt < 1:3080921/93‑1 (MQ=255)
caacaaATCGTTATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGt < 1:5077618/93‑1 (MQ=255)
aacaaATCGTTATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTg < 1:687052/93‑1 (MQ=255)
aaaTCGTTATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAAc < 1:6098935/93‑1 (MQ=255)
aaaTCGTTATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAAc < 2:5231608/93‑1 (MQ=255)
aTCGTTATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCg > 1:2427178/1‑93 (MQ=255)
aTCGTTATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCg > 2:4943300/1‑93 (MQ=255)
aTCGTTATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCg > 1:4248328/1‑93 (MQ=255)
gTTATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGc > 2:1156289/1‑93 (MQ=255)
ttATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGcc > 1:3370568/1‑93 (MQ=255)
ttATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGcc > 2:1019940/1‑93 (MQ=255)
ttATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGcc > 2:3365613/1‑93 (MQ=255)
aTGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGcccc < 2:4413432/93‑1 (MQ=255)
tGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCg > 2:4846537/1‑93 (MQ=255)
gCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTa > 1:2942576/1‑93 (MQ=255)
gCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTa > 2:1595925/1‑93 (MQ=255)
cAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTaa > 1:4500404/1‑93 (MQ=255)
aaaGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTaaa > 2:6248020/1‑93 (MQ=255)
aaaGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTaaa > 1:1613976/1‑93 (MQ=255)
aaaGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTaaa < 2:6469114/93‑1 (MQ=255)
aaGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTaaaa > 2:1437785/1‑93 (MQ=255)
aGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAAt < 1:1698051/93‑1 (MQ=255)
tggtgACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGa < 2:706734/93‑1 (MQ=255)
tggtgACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGa > 2:221913/1‑93 (MQ=255)
tggtgACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGa < 1:3993968/93‑1 (MQ=255)
tgtgACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTAACGTTGATAGTGAACCGTGCCCCGGTAAAATGAc < 1:3185944/92‑1 (MQ=255)
ggtgACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGAc > 2:5782600/1‑93 (MQ=255)
ggtgACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGAc < 2:6657725/93‑1 (MQ=255)
tgACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGa < 1:5849230/93‑1 (MQ=255)
gACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAg > 2:1188394/1‑93 (MQ=255)
gACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAg < 2:4219751/93‑1 (MQ=255)
gACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAg < 1:2458685/93‑1 (MQ=255)
aCTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGc < 1:3562401/93‑1 (MQ=255)
aCTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGc > 1:276564/1‑93 (MQ=255)
cTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGca < 2:563943/93‑1 (MQ=255)
tGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGcat < 2:5718561/93‑1 (MQ=255)
gAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGcatc > 1:2576526/1‑93 (MQ=255)
gAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGcatc < 1:5280451/93‑1 (MQ=255)
aGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGcatca < 2:4536529/93‑1 (MQ=255)
aGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGcatca < 2:4128139/93‑1 (MQ=255)
gCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGcatcat > 1:151373/1‑93 (MQ=255)
ggTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCa < 2:1076959/93‑1 (MQ=255)
gTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAGAATGACGAGCATCATTCAg < 1:6542925/93‑1 (MQ=255)
gTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAg < 2:2017669/93‑1 (MQ=255)
gTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAg < 2:3013620/93‑1 (MQ=255)
gTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAg > 1:935758/1‑93 (MQ=255)
ttttCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAgg > 2:1259454/1‑93 (MQ=255)
ttttCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAgg < 1:3455517/93‑1 (MQ=255)
ttCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCt < 1:4741631/93‑1 (MQ=255)
ttCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCt > 2:463988/1‑93 (MQ=255)
tCACACGCGAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTg < 2:6734830/93‑1 (MQ=255)
tCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTg > 2:9243/1‑93 (MQ=255)
cAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGa > 2:5919648/1‑93 (MQ=255)
aaaCGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGAc < 2:6190710/93‑1 (MQ=255)
aaCGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACa < 2:2917101/93‑1 (MQ=255)
aCGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACaa > 2:2845455/1‑93 (MQ=255)
cGCCAGCTTGATATGCTGCAAGAAGGCATTCGCTGTGACGTTGATAGTGAACCGTTCCCCGGTAAAATGACCAGCATAATTCAGGCTGACaaa > 1:4431002/1‑93 (MQ=255)
gCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACaaaa > 2:1347399/1‑93 (MQ=255)
cAGCTTGATATGCTGCAAGTGNGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATg < 2:3280908/93‑1 (MQ=255)
aGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGt < 2:5213372/93‑1 (MQ=255)
gCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGtt > 1:5940492/1‑93 (MQ=255)
gCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGtt > 2:1690361/1‑93 (MQ=255)
cTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTc < 1:2219887/93‑1 (MQ=255)
ttGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCg < 1:544987/93‑1 (MQ=255)
ttGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCg > 2:3797233/1‑93 (MQ=255)
tGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGa < 1:3799139/93‑1 (MQ=255)
tGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGa < 1:5497990/93‑1 (MQ=255)
tatGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGTTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCa < 2:3559948/93‑1 (MQ=255)
atGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCAc > 1:4375001/1‑93 (MQ=255)
tgctgcAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCAcc > 1:1214830/1‑93 (MQ=255)
gctgcAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCACCg > 1:4661036/1‑93 (MQ=255)
ctgcAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCACCGt < 2:315904/93‑1 (MQ=255)
ctgcAAGTGCGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCAGTAAAATGACCAGCATCATTCAGCCTGACAAAATGTTCGATCACCGt < 2:3972627/93‑1 (MQ=255)
tgcAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCACCGtt < 2:248568/93‑1 (MQ=255)
gcAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCACCGTTg < 2:5350540/93‑1 (MQ=255)
cAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCACCGTTGc < 2:2728220/93‑1 (MQ=255)
cAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCACCGTTGc < 1:5871736/93‑1 (MQ=255)
aGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCACCGTTGCtt > 1:3026629/1‑93 (MQ=255)
aGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCACCGTTGCtt > 1:526337/1‑93 (MQ=255)
gTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCACCGTTGCTTc > 2:1132250/1‑93 (MQ=255)
tGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCACCGTTGCTTCg < 1:2040622/93‑1 (MQ=255)
gggCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCACCGTTGCTTCgg < 1:6409921/93‑1 (MQ=255)
gggCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCACCGTTGCTTCgg > 2:5464132/1‑93 (MQ=255)
gggCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCACCGTTGCTTCgg > 2:1728564/1‑93 (MQ=255)
ggCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCACCGTTGCTTCGGc > 1:1318702/1‑93 (MQ=255)
aTTCGCTGTGACGTTGATAGTGAACCGCGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCACCGTCGCTTCGGCAcc > 1:5668162/1‑93 (MQ=255)
ttCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCACCGTTGCTTCGGCACCt > 2:2376031/1‑93 (MQ=255)
ttCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCACCGTTGCTTCGGCACCt < 1:18762/93‑1 (MQ=255)
tCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCACCGTTGCTTCGGCACCtt < 1:4894741/93‑1 (MQ=255)
gCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCACCGTTGCTTCGGCACCTTcc > 2:3714797/1‑93 (MQ=255)
gCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCACCGTTGCTTCGGCACCTTcc < 2:1686590/93‑1 (MQ=255)
gCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCACCGTTGCTTCGGCACCTTcc < 2:1123367/93‑1 (MQ=255)
cTGTGACGTTGATAGTGAACCGTGCCCCTGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCACCGTTGCTTCGGCACCTTCCg < 1:3932265/93‑1 (MQ=255)
cTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCACCGTTGCTTCGGCACCTTCCg > 1:6213187/1‑93 (MQ=255)
|
CTCAGCCAGCAACAAATCGTTATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGCGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCACCGTTGCTTCGGCACCTTCCG > NC_000913/1759105‑1759283
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CATCCTCAGCCAGCAACAAATCGTTATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGCGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCACCGTTGCTTCGGCACCTTCCGCCA > NC_000913/1759101‑1759286
|
CATCCTCAGCCAGCAACAAATCGTTATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGT > SRR4302536.2948977/1‑94 (MQ=60)
CATCCTCAGCCAGCAACAAATCGTTATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGT > SRR4302536.3342508/1‑94 (MQ=60)
CATCCTCAGCCACCGACAAATCGTTATGAGCAAAGTGAAGACTGAGCGGCAAATCAAACGCCAGCTTGCTATTCTGCAAGTAGGCATTCGCTGT > SRR4302536.2218917/1‑94 (MQ=30)
CACCCTCAGCCAGCAACAAATCGTTATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGT < SRR4302536.2388953/94‑1 (MQ=60)
ATCCTCAGCCAGCAACAAATCGTTATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTG < SRR4302536.1378957/94‑1 (MQ=60)
ATCCTCAGCCAGCAACAAATCGTTATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTG < SRR4302536.550588/94‑1 (MQ=60)
ATCCTCAGCCAGCAACAAATCGTTATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTG > SRR4302536.1994705/1‑94 (MQ=60)
CCTCAGCCAGCAACAAATCGTTATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGAC > SRR4302536.2507622/1‑94 (MQ=60)
CAGCCAGCAACAAATCGTTATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTT > SRR4302536.6364724/1‑94 (MQ=60)
CAGCCAGCAACAAATCGTTATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTT < SRR4302536.3540016/94‑1 (MQ=60)
AGCCAGCAACAAATCGTTATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTG > SRR4302536.608439/1‑94 (MQ=60)
AGCCAGCAACAAATCGTTATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTG > SRR4302536.3546662/1‑94 (MQ=60)
AGCCAGCAACAAATCGTTATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTG > SRR4302536.4098479/1‑94 (MQ=60)
CTAGCAACAAATCGTTATGAGCAAAGTGATAACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGAT < SRR4302536.6813829/94‑1 (MQ=60)
CAGCAACAAATCGTTATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATA > SRR4302536.2811051/1‑94 (MQ=60)
CAGCAACAAATCGTTATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATA < SRR4302536.3888976/94‑1 (MQ=60)
CAGCAACAAATCGTTATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATA < SRR4302536.5961901/94‑1 (MQ=60)
AGCAACAAATCGTTATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAG < SRR4302536.4467926/94‑1 (MQ=60)
CAACAAATCGTTATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTG < SRR4302536.5229588/94‑1 (MQ=60)
CAACAAATCGTTATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTG < SRR4302536.3171087/94‑1 (MQ=60)
CAACAAATCGTTATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTG > SRR4302536.60229/1‑94 (MQ=60)
AACAAATCGTTATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGA < SRR4302536.4708675/94‑1 (MQ=60)
AACAAATCGTTATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGA > SRR4302536.5219536/1‑94 (MQ=60)
AACAAATCGTTATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGA < SRR4302536.707163/94‑1 (MQ=60)
ACAAATCGTTATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAA > SRR4302536.312569/1‑94 (MQ=60)
ACAAATCGTTATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAA > SRR4302536.1322119/1‑94 (MQ=60)
CAAATCGTTATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAAC > SRR4302536.6781739/1‑94 (MQ=60)
AAATCGTTATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACC < SRR4302536.6280784/94‑1 (MQ=60)
AAATCGTTATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACC < SRR4302536.3824975/94‑1 (MQ=60)
AATCGTTATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCG > SRR4302536.4374870/1‑94 (MQ=60)
AATCGTTATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCG > SRR4302536.2500581/1‑94 (MQ=60)
ATCGTTATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGT < SRR4302536.5617162/94‑1 (MQ=60)
ATCGTTATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGT < SRR4302536.24253/94‑1 (MQ=60)
GTTATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCC < SRR4302536.244623/94‑1 (MQ=60)
GTTATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCC > SRR4302536.3470696/1‑94 (MQ=60)
TTATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCC < SRR4302536.3591307/94‑1 (MQ=60)
TTATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCC > SRR4302536.956450/1‑94 (MQ=60)
TTATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCC < SRR4302536.1745114/94‑1 (MQ=60)
AGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTA > SRR4302536.3029336/1‑94 (MQ=60)
AGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTA > SRR4302536.52402/1‑94 (MQ=60)
AGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTA < SRR4302536.6914442/94‑1 (MQ=60)
GCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAA > SRR4302536.4635470/1‑94 (MQ=60)
CAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAA > SRR4302536.1661024/1‑94 (MQ=60)
AAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAA > SRR4302536.3072534/1‑94 (MQ=60)
AAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAAT > SRR4302536.3003117/1‑94 (MQ=60)
AGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATG < SRR4302536.1747186/94‑1 (MQ=60)
AGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATG < SRR4302536.4005053/94‑1 (MQ=60)
TGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGAC < SRR4302536.4112488/94‑1 (MQ=60)
TGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTAACGTTGATAGTGAACCGTGCCCCGGTAAAATGACG < SRR4302536.3279353/94‑1 (MQ=60)
TGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAG < SRR4302536.6023496/94‑1 (MQ=60)
GACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGC > SRR4302536.3550285/1‑94 (MQ=60)
GACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGC < SRR4302536.2532926/94‑1 (MQ=60)
GACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGC > SRR4302536.283922/1‑94 (MQ=60)
ACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCA < SRR4302536.6591987/94‑1 (MQ=60)
ACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCA < SRR4302536.3668918/94‑1 (MQ=60)
ACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCA > SRR4302536.4682578/1‑94 (MQ=60)
TGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATC > SRR4302536.2653978/1‑94 (MQ=60)
GAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCA < SRR4302536.5437825/94‑1 (MQ=60)
AGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCAT > SRR4302536.155295/1‑94 (MQ=60)
GCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATT < SRR4302536.2003627/94‑1 (MQ=60)
GGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCA > SRR4302536.3251838/1‑94 (MQ=60)
GGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAG < SRR4302536.2271459/94‑1 (MQ=60)
GGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAG > SRR4302536.963340/1‑94 (MQ=60)
GTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAGAATGACGAGCATCATTCAGG < SRR4302536.6737769/94‑1 (MQ=60)
TTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGC < SRR4302536.3558442/94‑1 (MQ=60)
TTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCT < SRR4302536.2600052/94‑1 (MQ=60)
TTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTG < SRR4302536.4884306/94‑1 (MQ=60)
TCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGA < SRR4302536.6307294/94‑1 (MQ=60)
CAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGAC > SRR4302536.6002930/1‑94 (MQ=60)
CAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGAC > SRR4302536.1419849/1‑94 (MQ=60)
CAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGAC < SRR4302536.4443421/94‑1 (MQ=60)
ACGCCAGCTTGATATGCTGCAAGAAGGCATTCGCTGTGACGTTGATAGTGAACCGTTCCCCGGTAAAATGACCAGCATAATTCAGGCTGACAAA > SRR4302536.4563845/1‑94 (MQ=60)
CGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAA > SRR4302536.4251341/1‑94 (MQ=60)
CGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAA > SRR4302536.541209/1‑94 (MQ=60)
CCAGCTTGATATGCTGCAAGTGGCCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATG < SRR4302536.1668683/94‑1 (MQ=60)
AGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTT > SRR4302536.6117476/1‑94 (MQ=60)
CTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCG < SRR4302536.1783742/94‑1 (MQ=60)
CTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCG < SRR4302536.2287022/94‑1 (MQ=60)
CTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCG > SRR4302536.4844216/1‑94 (MQ=60)
TTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGA > SRR4302536.6613176/1‑94 (MQ=60)
TTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGA < SRR4302536.558893/94‑1 (MQ=60)
TGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGAT < SRR4302536.3912437/94‑1 (MQ=60)
TGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGAT < SRR4302536.5662042/94‑1 (MQ=60)
TGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGAT > SRR4302536.6099058/1‑94 (MQ=60)
GATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATC > SRR4302536.5452445/1‑94 (MQ=60)
TATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCAC > SRR4302536.4505654/1‑94 (MQ=60)
ATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCACC > SRR4302536.1251316/1‑94 (MQ=60)
TGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCACCG > SRR4302536.4801180/1‑94 (MQ=60)
GCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCACCGT < SRR4302536.4541408/94‑1 (MQ=60)
CTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCACCGTT < SRR4302536.6452458/94‑1 (MQ=60)
TGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCACCGTTG > SRR4302536.6177900/1‑94 (MQ=60)
CAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCACCGTTGCT < SRR4302536.6046684/94‑1 (MQ=60)
CAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCACCGTTGCT > SRR4302536.523356/1‑94 (MQ=60)
AAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGATAACATTTTCGATCACCGTTGCTT > SRR4302536.3597802/1‑94 (MQ=60)
AAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCACCGTTGCTT > SRR4302536.539804/1‑94 (MQ=60)
AAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCACCGTTGCTT > SRR4302536.3115561/1‑94 (MQ=60)
AGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCACCGTTGCTTC < SRR4302536.5878255/94‑1 (MQ=60)
AGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCACCGTTGCTTC > SRR4302536.5767811/1‑94 (MQ=60)
TGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCACCGTTGCTTCGG < SRR4302536.2102074/94‑1 (MQ=60)
TGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCACCGTTGCTTCGGC > SRR4302536.1358067/1‑94 (MQ=60)
GGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCACCGTTGCTTCGGC < SRR4302536.6601393/94‑1 (MQ=60)
CATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGGCAAACTGTTCGctcactgatgcttctgcagc > SRR4302536.6005374/1‑74 (MQ=60)
CATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCACCGTTGCTTCGGCACC < SRR4302536.5818915/94‑1 (MQ=60)
CATTCGCTGTGACGTTGATAGTGAACCGCGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCACCGTCGCTTCGGCACC > SRR4302536.5836644/1‑94 (MQ=60)
CATTCGCTGTGACGTTGATAGGGAACCGTGCCCCGGTAAAACGACGAGCATCATTCAGGCTGACGCAATGTTCGATCACCGTTGtttgggcaac > SRR4302536.6101668/1‑84 (MQ=60)
ATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGGGCCTCATTTAGGTTGACAAACTGTTGGATCACCGTTGCTCTGGCACCT > SRR4302536.2938191/1‑94 (MQ=55)
ATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCACCGTTGCTTCGGCACCT > SRR4302536.4615486/1‑94 (MQ=60)
ATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTAGATCACCGTTGCTTCGGCACCT > SRR4302536.6396388/1‑94 (MQ=60)
TTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCACCGTTGCTTCGGCACCTT < SRR4302536.19280/94‑1 (MQ=60)
TTCGCTGTGACGTTGATAGTCAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCACCGTTGCTTCGGCACCTT < SRR4302536.963940/94‑1 (MQ=60)
TCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCACCGTTGCTTCGGCACCTTC < SRR4302536.1632707/94‑1 (MQ=60)
TCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCACCGTTGCTTCGGCACCTTC < SRR4302536.5041959/94‑1 (MQ=60)
TCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCACCGTTGCTTCGGCACCTTC > SRR4302536.4896079/1‑94 (MQ=60)
CGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCACCGTTGCTTCGGCACCTTCC > SRR4302536.3284602/1‑94 (MQ=60)
GCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCACCGTTGCTTCGGCACCTTCCG > SRR4302536.6398297/1‑94 (MQ=60)
GCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCACCGTTGCTTCGGCACCTTCCG > SRR4302536.3291212/1‑94 (MQ=60)
GCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCACCGTTGCTTCGGCACCTTCCG < SRR4302536.923206/94‑1 (MQ=60)
CTGTGACGTTGATAGTGAACCGTGCCCCTGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCACCGTTGCTTCGGCACCTTCCGC < SRR4302536.4049098/94‑1 (MQ=60)
TGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCACCGTTGCTTCGGCACCTTCCGCC > SRR4302536.5309249/1‑94 (MQ=60)
GTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCACCGTTGCTTCGGCACCTTCCGCCA > SRR4302536.6038530/1‑94 (MQ=60)
|
CATCCTCAGCCAGCAACAAATCGTTATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGCGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCACCGTTGCTTCGGCACCTTCCGCCA > NC_000913/1759101‑1759286
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
