Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1475	266.7	13469680	98.2%	13227225	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,776,191	T→C	R325R (CGT→CGC)	b1695 →	putative oxidoreductase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,776,191	0	T	C	100.0%	745.9 / NA	232	R325R (CGT→CGC)	b1695	putative oxidoreductase
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (101/131); total (101/131)

Only 100 of 238 total aligned reads displayed.

CGCAACATGGTGCTGAAAGTGGCATGGCAAGCCGATCAGCATCAGTCACTGCGCACCAGCGCGGCGCTGGCAAAACTGTACTGTGCACGTACCGCAATGGAAGTCATTGATGATGCGATTCAAATCATGGGCGGTCTGGGCTATACCGATGAGGCGCGCGTCTCCCGCTTCTGGCGTGA  >  NC_000913/1776102‑1776280

cgcACCATGGTGCTGAAAGTGGCATGCCAAGCCGATCAGCATCAGTCACTGCGCACCAGCGCGGCGCTGGCAAAACTGTACAGTGCACGCAcc                                                                                        <  1:4052818/93‑1 (MQ=255)

cgcAACATGGTGCTGAAAGTGGCATGGCAAGCCGATCAGCATCAGTCACTGCGCACCAGCGCGGCGCTGGCAAAACTGTACTGTGCGCGCAcc                                                                                        <  1:4342862/93‑1 (MQ=255)

cgcAACATGGTGCTGAAAGTGGCATGGCAAGCCGATCAGCATCAGTCACTGCGCACCAGCGCGGCGCTGGCAAAACTGTACTGTGCACGCAcc                                                                                        <  2:1905945/93‑1 (MQ=255)

 gcAACATGGTGCTGAAAGTGGCATGGCAAGCCGATCAGCATCAGTCACTGCGCACCAGCGCGGCGCTGGCCAAACTGTACTGTGCACGCACCg                                                                                       >  2:3198053/1‑93 (MQ=255)

 gcAACATGGTGCTGAAAGTGGCATGGCAAGCCGATCAGCATCAGTCACTGCGCACCAGCGCGGCGCTGGCAAAACTGTACTGTGCACGCACCg                                                                                       >  1:4561425/1‑93 (MQ=255)

   aaCATGGTGCTGAAAGTGGCATGGCAAGCCGATCAGCATCAGTCACTGCGCACCAGCGCGGCGCTGGCAAAACTGTACTGTGCACGCACCGCa                                                                                     >  1:1269083/1‑93 (MQ=255)

   aaCATGGTGCTGAAAGTGGCATGGCAAGCCGATCAGCATCAGTCACTGCGCACCAGCGCGGCGCTGGCAAAACTGTACTGTGCACGCACCGCa                                                                                     >  2:2944164/1‑93 (MQ=255)

    aCATGGTGCTGAAAGTGGCATGGCAAGCCGATCAGCATCAGTCACTGCGCACCAGCGCGGCGCTGGCAAAACTGTACTGTGCACGCACCGCaa                                                                                    >  2:1708488/1‑93 (MQ=255)

    aCATGGTGCTGAAAGTGGCATGGCAAGCCGATCAGCATCAGTCACTGCGCACCAGCGCGGCGCTGGCAAAACTGTACTGTGCACGCACCGCaa                                                                                    >  2:486986/1‑93 (MQ=255)

     cATGGTGCTGAAAGTGGCATGGCAAGCCGATCAGCATCAGTCACTGCGCACCAGCGCGGCGCTGGCAAAACTGTACTGTGCACGCACCGCAAt                                                                                   <  1:4278766/93‑1 (MQ=255)

       tGGTGCTGAAAGTGGCATGGCAAGCCGATCAGCATCAGTCACTGCGCACCAGCGCGGCGCTGGCAAAACTGTACTGTGCACGCACCGCAATgg                                                                                 <  1:1480343/93‑1 (MQ=255)

       tGGTGCTGAAAGTGGCATGGCAAGCCGATCAGCATCAGTCACTGCGCACCAGCGCGGCGCTGGCAAAACTGTACTGTGCACGCACCGCAATgg                                                                                 <  1:2124120/93‑1 (MQ=255)

        ggTGCTGAAAGTGGCATGGCAAGCCGATCAGCATCAGTCACTGCGCACCAGCGCGGCGCTGGCAAAACTGTACTGTGCACGCACCGCAATGGa                                                                                >  2:77622/1‑93 (MQ=255)

        ggTGCTGAAAGTGGCATGGCAAGCCGATCAGCATCAGTCACTGCGCACCAGCGCGGCGCTGGCAAAACTGTACTGTGCACGCACCGCAATGGa                                                                                <  1:2851473/93‑1 (MQ=255)

         gTGCTGAAAGTGGCATGGCAAGCCGATCAGCATCAGTCACTGCGCACCAGCGCGGCGCTGGCAAAACTGTACTGTGCACGCACCGCAATGGaa                                                                               >  2:6231392/1‑93 (MQ=255)

         gTGCTGAAAGTGGCATGGCAAGCCGATCAGCATCAGTCACTGCGCACCAGCGCGGCGCTGGCAAAACTGTACTGTGCACGCACCGCAATGGaa                                                                               <  1:6546119/93‑1 (MQ=255)

         gTGCTGAAAGTGGCATGGCAAGCCGATCAGCATCAGTCACTGCGCACCAGCGCGGCGCTGGCAAAACTGTACTGTGCACGCACCGCAATGGaa                                                                               <  2:5950980/93‑1 (MQ=255)

          tccTGAAAGTGGCATGGCAAGCCGATCAGCATCAGTCACTGCGCACAAGCGCGGCGCTGGCAAAACTGTACTGTGCACGCACCGCAATGGAAg                                                                              <  1:5436194/91‑1 (MQ=255)

          tGCTGAAAGTGGCATGGCAAGCCGATCAGCATCAGTCACTGCGCACCAGCGCGGCGCTGGCAAAACTGTACTGTGCACGCACCGCAATGGAAg                                                                              >  1:4215307/1‑93 (MQ=255)

           gCTGAAAGTGGCATGGCAAGCCGATCAGCATCAGTCACTGCGCACCAGCGCGGCGCTGGCAAAACTGTACTGTGCACGCACCGCAATGGAAGt                                                                             <  2:3936946/93‑1 (MQ=255)

             tGAAAGTGGCATGGCAAGCCGATCAGCATCAGTCACTGCGCACCAGCGCGGCGCTGGCAAAACTGTACTGTGCACGCACCGCAATGGAAGTCa                                                                           >  1:5863517/1‑93 (MQ=255)

               aaaGTGGCATGGCAAGCCGATCAGCATCAGTCACTGCGCACCAGCGCGGCGCTGGCAAAACTGTACTGTGCACGCTCCGCAATGGAAGTCAtt                                                                         <  1:2892749/93‑1 (MQ=255)

               aaaGTGGCATGGCAAGCCGATCAGCATCAGTCACTGCGCACCAGCGCGGCGCTGGCAAAACTGTACTGTGCACGCACCGCAATGGAAGTCAtt                                                                         <  1:5401644/93‑1 (MQ=255)

               aaaGTGGCATGGCAAGCCGATCAGCATCAGTCACTGCGCACCAGCGCGGCGCTGGCAAAACTGTACTGTGCACGCACCGCAATGGAAGTCAtt                                                                         <  2:287159/93‑1 (MQ=255)

               aaaGTGGAATGGCAAGCCGATCAGCATCAGTCACTGCGCACCAGCGCGGCGCTGGCAAAACTGTACTGTGCACGCACCGCAATGGAAGTCAtt                                                                         <  1:4079544/93‑1 (MQ=255)

                 aGTGGCATGGCAAGCCGATCAGCATCAGTCACTGCGCACCAGCGCGGCGCTGGCAAAACTGTACTGTGCACGCACCGCAATGGAAGTCATtga                                                                       <  2:6426470/93‑1 (MQ=255)

                 aGTGGCATGGCAAGCCGATCAGCATCAGTCACTGCGCACCAGCGCGGCGCTGGCAAAACTGTACTGTGCACGCACCGCAATGGAAGTCATtga                                                                       >  1:6440357/1‑93 (MQ=255)

                 aGTGGCATGGCAAGCCGATCAGCATCAGTCACTGCGCACCAGCGCGGCGCTGGCAAAACTGTACTGTGCACGCACCGCAATGGAAGTCATtga                                                                       <  1:1532467/93‑1 (MQ=255)

                  gTGGCATGGCAAGCCGATCAGCATCAGTCACTGCGCACCAGCGCGGCGCTGGCAAAACTGTACTGTGCACGCACCGCAATGGAAGtcattcat                                                                      >  2:436494/1‑93 (MQ=255)

                    ggcagggcaAGCCGATCAGCATCAGTCACTGCGCACCAGCGCGGCGCTGGCAAAACTGTACTGTGCACGCACCGCAATGGAAGTCATtgatga                                                                    <  2:3350070/93‑1 (MQ=255)

                     gcatggcaAGCCGATCAGCATCAGTCACTGCGCACCAGCGCGGCGCTGGCAAAACTGTACTGTGCACGCACCGCAATGGAAGTCATTgatgat                                                                   >  2:2221147/1‑93 (MQ=255)

                      catggcaAGCCGATCAGCATCAGTCACTGCGCACCAGCGCGGCGCTGGCAAAACTGTACTGTGCACGCACCGCAATGGAAGTCATTGatgatg                                                                  <  2:2638056/93‑1 (MQ=255)

                      catggcaAGCCGATCAGCATCAGTCACTGCGCACCAGCGCGGCGCTGGCAAAACTGTACTGTGCACGCACCGCAATGGAAGTCATTGatgatg                                                                  <  2:5505378/93‑1 (MQ=255)

                       atggcaAGCCGATCAGCATCAGTCACTGCGCACCAGCGCGGCGCTGGCAAAACTGTACTGTGCACGCACCGCAATGGAAGTCATTGATGATGc                                                                 <  2:3724747/93‑1 (MQ=255)

                       atggcaAGCCGATCAGCATCAGTCACTGCGCACCAGCGCGGCGCTGGCAAAACTGTACTGTGCACGCACCGCAATGGAAGTCATTGATGATGc                                                                 <  2:6002995/93‑1 (MQ=255)

                       atggcaAGCCGATCAGCATCAGTAACTGCGCACCAGCGCGGCGCTGGCAAAACTGTACTGTGCACGCACCGCAATGGAAGTCATTGATGATGc                                                                 >  1:5372931/1‑93 (MQ=255)

                           caAGCCGATCAGCATCAGTCACTGCGCACCAGCGCGGCGCTGGCAAAACTGTACTGTGCACGCACCGCAATGGAAGTCATTGATGATGCGAtt                                                             <  2:4004633/93‑1 (MQ=255)

                            aaGCCGATCAGCATCAGTCACTGCGCACCAGCGCGGCGCTGGCAAAACTGTACTGTGCACGCACCGCAATGGAAGTCATTGATgattcgattc                                                            <  1:6370551/93‑1 (MQ=255)

                            aaGCCGATCAGCATCAGTCACTGCGCACCAGCGCGGCGCTGGCAAAACTGTACTGTGCACGCACCGCAATGGAAGTCATTGATGATGCGATTc                                                            >  1:2309007/1‑93 (MQ=255)

                            aaGCCGATCAGCATCAGTCACTGCGCACCAGCGCGGCGCTGGCAAAACTGTACTGTGCACGCACCGCAATGGAAGTCATTGATGATGCGATTc                                                            >  1:1754082/1‑93 (MQ=255)

                            aaGCCGATCAGCATCAGTCACTGCGCACCAGCGCGGCGCTGGCAAAACTGTACTGTGCACGCACCGCAATGGAAGTCATTGATGATGCGATTc                                                            >  1:3343742/1‑93 (MQ=255)

                               ccGATCAGCATCAGTCACTGCGCACCAGCGCGGCGCTGGCAAAACTGTACTGTGCACGCACCGCAATGGAAGTCATTGATGATGCGATTCaaa                                                         <  2:1165478/93‑1 (MQ=255)

                               ccGATCAGCATCAGTCACTGCGCACCAGCGCGGCGCTGGCAAAACTGTACTGTGCACGCACCGCAATGGAAGTCATTGATGATGCGATTCaaa                                                         >  1:3277614/1‑93 (MQ=255)

                               ccGATCAGCATCAGTCACTGCGCACCAGCGCGGCGCTGGCAAAACTGTACTGTGCACGCACCGCAATGGAAGTCATTGATGATGCGATTCaaa                                                         <  2:6214408/93‑1 (MQ=255)

                                 gATCAGCATCAGTCACTGCGCACCAGCGCGGCGCTGGCAAAACTGTACTGTGCACGCACCGCAATGGAAGTCATTGATGATGCGATTCAAATc                                                       <  2:4484398/93‑1 (MQ=255)

                                  aTCAGCATCAGTCACTGCGCACCAGCGCGGCGCTGGCAAAACTGTACTGTGCACGCACCGCAATGGAAGTCATTGATGATGCGATTCAAATCa                                                      <  1:6453296/93‑1 (MQ=255)

                                  aTCAGCATCAGTCACTGCGCACCAGCGCGGCGCTGGCAAAACTGTACTGTGCACGCACCGCAATGGAAGTCATTGATGATGCGATTCAAATCa                                                      >  2:200334/1‑93 (MQ=255)

                                     aGCATCAGTCACTGCGCACCAGCGCGGCGCTGGCAAAACTGTACTGTGCACGCACCGCAATGGAAGTCATTGATGATGCGATTCAAATCATgg                                                   <  2:2434480/93‑1 (MQ=255)

                                      gCATCAGTCACTGCGCACCAGCGCGGCGCTGGCAAAACTGTACTGTGCACGCACCGCAATGGAAGTCATTGATGATGCGATTCAAATCATggg                                                  >  1:1042513/1‑93 (MQ=255)

                                       cATCAGTCACTGCGCACCAGCGCGGCGCTGGCAAAACTGTACTGTGCACGCACCGCAATGGAAGTCATTGATGATGCGATTCAAATCATGGGc                                                 <  2:5522605/93‑1 (MQ=255)

                                        aTCAGTCACTGCGCACCAGCGCGGCGCTGGCAAAACTGTACTGTGCACGCACCGCAATGGAAGTCATTGATGATGCGATTCAAATCATGGGCg                                                >  2:139309/1‑93 (MQ=255)

                                        aTCACTCACTGCGCACCAGCGCGGCGCTGGCAAAACTGTACTGTGCACGCACCGCAATGGAAGTCATTGATGATGCGATTCAAATCATGGGCg                                                >  1:345173/1‑93 (MQ=255)

                                         tCAGTCACTGCGCACCAGCGCGGCGCTGGCAAAACTGTACTGTGCACGCACCGCAATGGAAGTCATTGATGATGCGATTCAAATCATGGGCgg                                               >  1:843670/1‑93 (MQ=255)

                                         tCAGTCACTGCGCACCAGCGCGGCGCTGGCAAAACTGTACTGTGCACGCACCGCAATGGAAGTCATTGATGATGCGATTCAAATCATGGGCgg                                               >  2:1653282/1‑93 (MQ=255)

                                         tCAGTCACTGCGCACCAGCGCGGCGCTGGCAAAACTGTACTGTGCACGCACCGCAATGGAAGTCATTGATGATGCGATTCAAATCATGGGCgg                                               <  2:5206705/93‑1 (MQ=255)

                                         tCAGTCACTGCGCACCAGCGCGGCGCTGGCAAAACTGTACTGTGCACGCACCGCAATGGAAGTCATTGATGATGCGATTCAAATCATGGGCgg                                               >  1:1249844/1‑93 (MQ=255)

                                         tCAGTCACTGCGCACCAGCGCGGCGCTGGCAAAACTGTACTGTGCACGCACCGCAATGGAAGTCATTGATGATGCGATTCAAATCATGGGCgg                                               >  1:1601276/1‑93 (MQ=255)

                                          cAGTCACTGCGCACCAGCGCGGCGCTGGCAAAACTGTACTGTGCACGCACCGCAATGGAAGTCATTGATGATGCGATTCAAATCATGGGCGGt                                              <  2:2573168/93‑1 (MQ=255)

                                           aGTCACTGCGCGCCAGCGCGGCGCTGGCACAACTGTACTGTGCACGCACCGCAATGGAAGTCATTGATGATGCGATTCAAATCATGGGCGGTc                                             <  2:6719484/93‑1 (MQ=255)

                                           aGTCACTGCGCACCAGCGCGGCGCTGGCAAAACTGTACTGTGCACGCACCGCAATGGAAGTCATTGATGATGCGATTCAAATCATGGGCGGTc                                             <  1:6192037/93‑1 (MQ=255)

                                           aGTCACTGCGCACCAGCGCGGCGCTGGCAAAACTGTACTGTGCACGCACCGCAATGGAAGTCATTGATGATGCGATTCAAATCATGGGCGGTc                                             <  2:5166681/93‑1 (MQ=255)

                                             tCACTGCGCACCAGCGCGGCGCTGGCAAAACTGTACTGTGCACGCACCGCAATGGAAGTCATTGATGATGCGATTCAAATCATGGGCGGTCTg                                           <  2:4779947/93‑1 (MQ=255)

                                              cACTGCGCACCAGCGCGGCGCTGGCAAAACTGTACTGTGCACGCACCGCAATGGAAGTCATTGATGATGCGATTCAAATCATGGGCGGTCTgg                                          <  1:1857732/93‑1 (MQ=255)

                                                cTGCGCACCAGCGCGGCGCTGGCAAAACTGTACTGTGCACGCACCGCAATGGAAGTCATTGATGATGCGATTCAAATCATGGGCGGTCTGGGc                                        <  1:5827330/93‑1 (MQ=255)

                                                cTGCGCACCAGCGCGGCGCTGGCAAAACTGTACTGTGCACGCACCGCAATGGAAGTCATTGATGATGCGATTCAAATCATGGGCGGTCTGGGc                                        <  1:5782690/93‑1 (MQ=255)

                                                  gcgcACCAGCGCGGCGCTGGCAAAACTGTACTGTGCACGCCCCGCAATGGAAGTCATTGATGATGCGATTCAAATCATGGGCGGTCTGGGCta                                      <  2:4657913/93‑1 (MQ=255)

                                                  gcgcACCAGCGCGGCGCTGGCAAAACTGTACTGTGCACGCACCGCAATGGAAGTCATTGATGATGCGATTCAAATCATGGGCGGTCTGGGCta                                      <  1:20301/93‑1 (MQ=255)

                                                     cACCAGCGCGGCGCTGGCAAAACTGTACTGTGCACGCACCGCAATGGAAGTCATTGATGATGCGATTCAAATCATGGGCGGTCTGGGCTATAc                                   >  2:4178827/1‑93 (MQ=255)

                                                     cACCAGCGCGGCGCTGGCAAAACTGTACTGTGCACGCACCGCAATGGAAGTCATTGATGATGCGATTCAAATCATGGGCGGTCTGGGCTATAc                                   <  2:3476983/93‑1 (MQ=255)

                                                     cACCAGCGCGGCGCTGGCAAAACTGTACTGTGCACGCACCGCAATGGAAGTCATTGATGATGCGATTCAAATCATGGGCGGTCTGGGCTATAc                                   <  1:6641562/93‑1 (MQ=255)

                                                      aCCAGCGCGGCGCTGGCAAAACTGTACTGTGCACGCACCGCAATGGAAGTCATTGATGATGCGATTCAAATCATGGGCGGTCTGGGCTATAcc                                  >  2:1084538/1‑93 (MQ=255)

                                                      aCCAGCGCGGCGCTGGCAAAACTGTACTGTGCACGCACCGCAATGGAAGTCATTGATGATGCGATTCAAATCATGGGCGGTCTGGGCTATAcc                                  >  1:4661410/1‑93 (MQ=255)

                                                      aCCAGCGCGGCGCTGGCAAAACTGTACTGTGCACGCACCGCAATGGAAGTCATTGATAATGCGATTCAAATCATGGGCGGTCTGGGCTATAcc                                  <  1:299666/93‑1 (MQ=255)

                                                       ccAGCGCGGCGCTGGCAAAACTGTACTGTGCACGCACCGCAATGGAAGTCATTGATGATGCGATTCAAATCATGGGCGGTCTGGGCTATACCg                                 >  2:5690663/1‑93 (MQ=255)

                                                       ccAGCGCGGCGCTGGCAAAACTGTACTGTGCACGCACCGCAATGGAAGTCATTGATGATGCGATTCAAATCATGGGCGGTCTGGGCTATACCg                                 >  1:1613746/1‑93 (MQ=255)

                                                         aGCGCGGCGCTGGCAAAACTGTACTGTGCACGCACCGCAATGGAAGTCATTGATGATGCGATTCAAATCATGGGCGGTCTGGGCTATACCGAt                               <  1:5277951/93‑1 (MQ=255)

                                                          gcgcGGCGCTGGCAAAACTGTACTGTGCACGCACCGCAATGGAAGTCATTGATGATGCGATTCAAATCATGGGCGGTCTGGGCTATACCGATg                              <  1:5006425/93‑1 (MQ=255)

                                                          gcgcGGCGCTGGCAAAACTGTACTGTGCACGCACCGCAATGGAAGTCATTGATGATGCGATTCAAATCATGGGCGGTCTGGGCTATACCGATg                              >  2:3977140/1‑93 (MQ=255)

                                                          gcgcGGCGCTGGCAAAACTGTACTGTGCACGCACCGCAATGGAAGTCATTGATGATGCGATTCAAATCATGGGCGGTCTGGGCTATACCGATg                              >  1:4752018/1‑93 (MQ=255)

                                                          gcgcGGCGCTGGCAAAACTGTACTGTGCACGCACCGCAATGGAAGTCATTGATGATGCGATTCAAATCATGGGCGGTCTGGGCTATACCGATg                              >  1:3639070/1‑93 (MQ=255)

                                                           cgcgGCGCTGGCAAAACTGTACTGTGCACGCACCGCAATGGAAGTCATTGATGATGCGATTCAAATCATGGGCGGTCTGGGCTATACCGATGa                             <  2:2507103/93‑1 (MQ=255)

                                                            gcggcgCTGGCAAAACTGTACTGTGCACGCACCGCAATGGAAGTCATTGATGATGCGATTCAAATCATGGGCGGTCTGGGCTATACCGATGAg                            <  1:1414135/93‑1 (MQ=255)

                                                            gcggcgCTGGCAAAACGTTACTGTGCACGCACCGCAATGGAAGTCATTGATGATGCGATTCAAATCATGGGCGGTCTGGGCTATACCGATGAg                            <  1:2624339/93‑1 (MQ=255)

                                                              ggcgCTGGCAAAACTGTACTGTGCACGCACCGCAATGGAAGTCATTGATGATGCGATTCAAATCATGGGCGGTCTGGGCTATACCGATGAGgc                          <  1:5200421/93‑1 (MQ=255)

                                                              ggcgCTGGCAAAACTGTACTGTGCACGCACCGCAATGGAAGTCATTGATGATGCGATTCAAATCATGGGCGGTCTGGGCTATACCGATGAGgc                          <  2:3536085/93‑1 (MQ=255)

                                                               gcgcTGGCAAAACTGTACTGTGCACGCACCGCAATGGAAGTCATTGATGATGCGATTCAAATCATGGGCGGTCTGGGCTATACCGATGAGgcg                         >  2:6392777/1‑93 (MQ=255)

                                                               gcgcTGGCAAAACTGTACTGTGCACGCACCGCAATGGAAGTCATTGATGATGCGATTCAAATCATGGGCGGTCTGGGCTATACCGATGAGgcg                         >  2:2495458/1‑93 (MQ=255)

                                                                  cTGGCAAAACTGTACTGTGCACGCACCGCAATGGAAGTCATTGATGATGCGATTCAAATCATGGGCGGTCTGGGCTATACCGATGAGgcgcgc                      <  2:1341770/93‑1 (MQ=255)

                                                                  cTGGCAAAACTGTACTGTGCACGCACCGCAATGGAAGTCATTGATGATGCGATTCAAATCATGGGCGGTCTGGGCTATACCGATGAGgcgcgc                      <  1:4851571/93‑1 (MQ=255)

                                                                     gCAAAACTGTACTGTGCACGCACCGCAATGGAAGTCATTGATGATGCGATTCAAATCATGGGCGGTCTGGGCTATACCGATGAGGCGCGCGtc                   >  1:5257703/1‑93 (MQ=255)

                                                                      cAAAACTGTACTGTGCACGCACCGCAATGGAAGTCATTGATGATGCGATTCAAATCATGGGCGGTCTGGGCTATACCGATGAGGCGCGCGtct                  <  1:517551/93‑1 (MQ=255)

                                                                        aaaCTGTACTGTGCACGCACCGCAATGGAAGTCATTGATGATGCGATTCAAATCATGGGCGGTCTGGGCTATACCGATGAGGCGCGCGTCTcc                <  2:1597554/93‑1 (MQ=255)

                                                                        aaaCTGTACTGTGCACGCACCGCAATGGAAGTCATTGATGATGCGATTCAAATCATGGGCGGTCTGGGCTATACCGATGAGGCGCGCGTCTcc                <  2:38052/93‑1 (MQ=255)

                                                                         aaCTGTACTGTGCACGCACCGCAATGGAAGTCATTGATGATGCGATTCAAATCATGGGCGGTCTGGGCTATACCGATGAGGCGCGCGTCTccc               >  1:1892148/1‑93 (MQ=255)

                                                                          actgtactgtGCACGCACCGCAATGGAAGTCATTGATGATGCGATTCAAATCATGGGCGGTCTGGGCTATACCGATGAGGCGCGCGTCTCCCg              >  2:5902579/1‑93 (MQ=255)

                                                                           ctgtactgtGCACGCACCGCAATGGAAGTCATTGATGATGCGATTCAAATCATGGGCGGTCTGGGCTATACCGATGAGGCGCGCGTCTCCCGc             <  1:2509721/93‑1 (MQ=255)

                                                                              tactgtGCACGCACCGCAATGGAAGTCATTGATGATGCGATTCAAATCATGGGCGGTCTGGGCTATACCGATGAGGCGCGCGTCTCCCGCTTc          <  2:6632992/93‑1 (MQ=255)

                                                                                 tgtgCACGCACCGCAATGGAAGTCATTGATGATGCGATTCAAATCATGGGCGGTCTGGGCTATACCGATGAGGCGCGCGTCTCCCGCTTCTgg       >  2:5047120/1‑93 (MQ=255)

                                                                                 tgtgCACGCACCGCAATGGAAGTCATTGATGATGCGATTCAAATCATGGGCGGTCTGGGCTATACCGATGAGGCGCGCGTCTCCCGCTTCTgg       >  2:4247866/1‑93 (MQ=255)

                                                                                    gcacgcacCGCAATGGAAGTCATTGATGATGCGATTCAAATCATGGGCGGTCTGGGCTATACCGATGAGGCGCGCGTCTCCCGCTTCTGGCGt    >  1:767752/1‑93 (MQ=255)

CGCAACATGGTGCTGAAAGTGGCATGGCAAGCCGATCAGCATCAGTCACTGCGCACCAGCGCGGCGCTGGCAAAACTGTACTGTGCACGTACCGCAATGGAAGTCATTGATGATGCGATTCAAATCATGGGCGGTCTGGGCTATACCGATGAGGCGCGCGTCTCCCGCTTCTGGCGTGA  >  NC_000913/1776102‑1776280

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CATGCGCAACATGGTGCTGAAAGTGGCATGGCAAGCCGATCAGCATCAGTCACTGCGCACCAGCGCGGCGCTGGCAAAACTGTACTGTGCACGTACCGCAATGGAAGTCATTGATGATGCGATTCAAATCATGGGCGGTCTGGGCTATACCGATGAGGCGCGCGTCTCCCGCTTCTGGCGTGATGTC  >  NC_000913/1776098‑1776284

CATGCGCAACATGGTGCTGAAAGTGGCATGGCAAGCCGATCAGCATCAGTCACTGCGCACCAGCGCGGCGCTGGCAAAACTGTACTGTGCACGC                                                                                               >  SRR4302536.2616787/1‑94 (MQ=60)

CATGCGCAACATGGTGCTGAAAGTGGCATGGCAAGCCGATCAGCATCAGTCACTGCGCACCAGCGCGGCGCTGGCAAAACTGTACTGTGCACGC                                                                                               >  SRR4302536.4910149/1‑94 (MQ=60)

 ATGCGCAACATGGTGCTGAAAGTGGCATGGCAAGCCGATCAGCATCAGTCACTGCGCACCAGCGCGGCGCTGGCAAAACTGTACTGTGCACGCA                                                                                              >  SRR4302536.2722445/1‑94 (MQ=60)

  TGCGCAACATGGTGCTGAAAGTGGCATGGCAAGCCGATCAGCATCAGTCACTGCGCACCAGCGCGGCGCTGGCAAAACTGTACTGTGCACGCAC                                                                                             <  SRR4302536.6343389/94‑1 (MQ=60)

    CGCACCATGGTGCTGAAAGTGGCATGCCAAGCCGATCAGCATCAGTCACTGCGCACCAGCGCGGCGCTGGCAAAACTGTACAGTGCACGCACCG                                                                                           <  SRR4302536.4172968/94‑1 (MQ=60)

    CGCAACATGTGGCGGAAAGTGTCAGGTCAAGCCGATCAGCATCAGTCACTGCGCACCAGCGCGGCGCTGGCAAAACTGTACGGTGCACGCACCG                                                                                           <  SRR4302536.3622869/94‑1 (MQ=60)

    CGCAACATGGTGCTGAAAGTGGCATGGCAAGCCGATCAGCATCAGTCACTGCGCACCAGCGCGGCGCTGGCAAAACTGTACTGTGCGCGCACCG                                                                                           <  SRR4302536.4472892/94‑1 (MQ=60)

    CGCAACATGGTGCTGAAAGTGGCATGGCAAGCCGATCAGCATCAGTCACTGCGCACCAGCGCGGCGCTGGCAAAACTGTACTGTGCACGCACCG                                                                                           <  SRR4302536.4422175/94‑1 (MQ=60)

    CGCAACATGGTGCTGAAAGTGGCATGGCAAGCCGATCAGCATCAGTCACTGCGCACCAGCGCGGCGCTGGCAAAACTGTACTGTGCACGCACCG                                                                                           >  SRR4302536.4698277/1‑94 (MQ=60)

      CAACATGGTGCTGAAAGTGGCATGGCAAGCCGATCAGCATCAGTCACTGCGCACCAGCGCGGCGCTGGCAAAACTGTACTGTGCACGCACCGCA                                                                                         >  SRR4302536.1307103/1‑94 (MQ=60)

      CAACATGGTGCTGAAAGTGGCATGGCAAGCCGATCAGCATCAGTCACTGCGCACCAGCGCGGCGCTGGCAAAACTGTACTGTGCACGCACCGCA                                                                                         <  SRR4302536.4946809/94‑1 (MQ=60)

      CAACATGGTGCTGAAAGTGGCATGGCAAGCCGATCAGCATCAGTCACTGCGCACCAGCGCGGCGCTGGCAAAACTGTACTGTGCACGCACCGCA                                                                                         >  SRR4302536.5081851/1‑94 (MQ=60)

       AACATGGTGCTGAAAGTGGCATTGCAAGCCGATCAGCATCAGCCACTGCGCACCAGCGCGGCGCTGGCAAAACTGTACTGTGCACGCACCGCAA                                                                                        >  SRR4302536.1594748/1‑94 (MQ=60)

       AACATGGTGCTGAAAGTGGCATGGCAAGCCGATCAGCATCAGTCACTGCGCACCAGCGCGGCGCTGGCAAAACTGTACTGTGCACGCACCGCAA                                                                                        >  SRR4302536.6159206/1‑94 (MQ=60)

        ACATGGTGCTGAAAGTGGCATGGCAAGCCGATCAGCATCAGTCACTGCGCACCAGCGCGGCGCTGGCAAAACTGTACTGTGCACGCACCGCAAT                                                                                       >  SRR4302536.4351169/1‑94 (MQ=60)

         CATGGTGCTGAAAGTGGCATGGCAAGCCGATCAGCATCAGTCACTGCGCACCAGCGCGGCGCTGGCAAAACTGTACTGTGCACGCACCGCAATG                                                                                      <  SRR4302536.4406371/94‑1 (MQ=60)

         CATGGTGCTGAAAGTGGCATGGCAAGCCGATCAGCATCAGTCACTGCGCACCAGCGCGGCGCTGGCAAAACTGTACTGTGCACGCACCGCAATG                                                                                      >  SRR4302536.1563374/1‑94 (MQ=60)

         CATGGTGCTGAAAGTGGCATGGCAAGCCGATCAGCATCAGTCACTGCGCACCAGCGCGGCGCTGGCAAAACTGTACTGTGCACGCACCGCAATG                                                                                      <  SRR4302536.796607/94‑1 (MQ=60)

          ATGGTGCTGAAAGTGGCATGGCAAGCCGATCAGCATCAGTCACTGCGCACCAGCGCGGCGCTGGCAAAACTGTACTGTGCACGCACCGCAATGG                                                                                     <  SRR4302536.855570/94‑1 (MQ=60)

          ATGGTGCTGAAAGTGGCATGGCAAGCCGATCAGCATCAGTCACTGCGCACCAGCGCGGCGCTGGCAAAACTGTACTGTGCACGCACCGCAATGG                                                                                     >  SRR4302536.1486574/1‑94 (MQ=60)

          ATGGTGCTGAAAGTAGCATGGCAAGCCGATCAGCATCAGTCACTGCGCACCAGCGCGGCGCTGGCAAAACTGTACTCTGCACGCACCGCAATGG                                                                                     <  SRR4302536.3585307/94‑1 (MQ=60)

           TGGTGCTGAAAGTGGCATGGCAAGCCGATCAGCATCAGTCACTGCGCACCAGCGCGGCGCTGGCAAAACTGTACTGTGCACGCACCGCAATGGA                                                                                    <  SRR4302536.1524091/94‑1 (MQ=60)

           TGGTGCTGAAAGTGGCATGGCAAGCCGATCAGCATCAGTCACTGCGCACCAGCGCGGCGCTGGCAAAACTGTACTGTGCACGCACCGCAATGGA                                                                                    <  SRR4302536.2187933/94‑1 (MQ=60)

            GGTGCTGAAAGTGGCATGGCAAGCCGATCAGCATCAGTCACTGCGCACCAGCGCGGCGCTGGCAAAACTGTACTGTGCACGCACCGCAATGGAA                                                                                   <  SRR4302536.2935768/94‑1 (MQ=60)

             GTGCTGAAAGTGGCATGGCAAGCCGATCAGCATCAGTCACTGCGCACCAGCGCGGCGCTGGCAAAACTGTACTGTGCACGCACCGCAATGGAAG                                                                                  >  SRR4302536.4340669/1‑94 (MQ=60)

             GTGCTGAAAGTGGCATGGCAAGCCGATCAGCATCAGTCACTGCGCACCAGCGCGGCGCTGGCAAAACTGTACTGTGCACGCACCGCAATGGAAG                                                                                  <  SRR4302536.6741053/94‑1 (MQ=60)

              TGCTGAAAGTGGCATGGCAAGCCGATCAGCATCAGTCACTGCGCACCAGCGCGGCGCTGGCAAAACTGTACTGTGCACGCACCGCAATGGAAGT                                                                                 <  SRR4302536.3404759/94‑1 (MQ=60)

              TCCTGAAAGTGGCATGGCAAGCCGATCAGCATCAGTCACTGCGCACAAGCGCGGCGCTGGCAAAACTGTACTGTGCACGCACCGCAATGGAAGT                                                                                 <  SRR4302536.5598755/94‑1 (MQ=60)

                CTGAAAGTGGCATGGCAAGCCGATCAGCATCAGTCACTGCGCACCAGCGCGGCGCTGGCAAAACTGTACTGTGCACGCACCGCAATGGAAGTCA                                                                               >  SRR4302536.6038196/1‑94 (MQ=60)

                CTGAAAGTGGCATGGCAAGCCGATCAGAATCAGCCACTGCGCACCAGCGCGGCGCTGGCACAACTGTACTGTGCACGCACCGCAATGGAAGTCA                                                                               >  SRR4302536.1780458/1‑94 (MQ=60)

                 TGAAAGTGGCATGGCAAGCCGATCAGCATCAGTCACTGCGCACCAGCGCGGCGCTGGCAAAACTGTACTGTGCACGCACCGCAATGGAAGTCAT                                                                              <  SRR4302536.5101045/94‑1 (MQ=60)

                 TGAAAGTGGCATGGCAAGCCGATCAGCATCAGTCACTGCGCACCAGCGCGGCGCTGGCAAAACTGTACTGTGCACGCACCGCAATGGAAGTCAT                                                                              <  SRR4302536.4533985/94‑1 (MQ=60)

                  GAAAGTGGCAGGACAAGCCGATCAGCATCAGTCACTGCGCACCAGCGCGGCGCTGGCAAAACTGTACTGTGCACGCACCGCAATGGAAGTCATT                                                                             <  SRR4302536.4757239/94‑1 (MQ=60)

                   AAAGTGGCATGGCAAGCCGATCAGCATCAGTCACTGCGCACCAGCGCGGCGCTGGCAAAACTGTACTGTGCACGCTCCGCAATGGAAGTCATTG                                                                            <  SRR4302536.2978059/94‑1 (MQ=60)

                   AAAGTGGCATGGCAAGCCGATCAGCATCAGTCACTGCGCACCAGCGCGGCGCTGGCAAAACTGTACTGTGCACGCACCGCAATGGAAGTCATTG                                                                            <  SRR4302536.2160321/94‑1 (MQ=60)

                   AAAGTGGCATGGCAAGCCGATCAGCATCAGTCACTGCGCACCAGCGCGGCGCTGGCAAAACTGTACTGTGCACGCACCGCAATGGAAGTCATTG                                                                            <  SRR4302536.5562996/94‑1 (MQ=60)

                   AAAGTGGAATGGCAAGCCGATCAGCATCAGTCACTGCGCACCAGCGCGGCGCTGGCAAAACTGTACTGTGCACGCACCGCAATGGAAGTCATTG                                                                            <  SRR4302536.4200463/94‑1 (MQ=60)

                   AAAGGGGCATGGCAAGCCGATCAGCATCAGTCACTGCGCACCAGCGCGGCGCTGGCAAAACTGTACTGTGCACGCACCGCAATGGAAGTCATTG                                                                            <  SRR4302536.6870583/94‑1 (MQ=60)

                    AAGTGGCATGGCAAGCCGATCAGCATCAGTCACTGCGCACCAGCGCGGCGCTGGCAAAACTGTACTGTGCACGCACCGCAATGGAAGTCATTGA                                                                           >  SRR4302536.6632798/1‑94 (MQ=60)

                    AAGTGGCATGGCAAGCCGATCAGCATCAGTCACTGCGCACCAGCGCGGCGCTGGCAAAACTGTACTGTGCACGCACCGCAATGGAAGTCATTGA                                                                           >  SRR4302536.6733797/1‑94 (MQ=60)

                     AGTGGCATGGCAAGCCGATCAGCATCAGTCACTGCGCACCAGCGCGGCGCTGGCAAAACTGTACTGTGCACGCACCGCAATGGAAGTCATTTAT                                                                          <  SRR4302536.6606616/94‑1 (MQ=60)

                     AGTGGCATGGCAAGCCGATCAGCATCAGTCACTGCGCACCAGCGCGGCGCTGGCAAAACTGTACTGTGCACGCACCGCAATGGAAGTCATTGAT                                                                          <  SRR4302536.1577549/94‑1 (MQ=60)

                     AGTGGCATGGCAAGCCGATCAGCATCAGTCACTGCGCACCAGCGCGGCGCTGGCAAAACTGTACTGTGCACGCACCGCAATGGAAGTCATTGAT                                                                          >  SRR4302536.1653206/1‑94 (MQ=60)

                          CATGGCAAGCCGATCAGCATCAGTAACTGCGCACCAGCGCGGCGCTGGCAAAACTGTACTGTGCACGCACCGCAATGGAAGTCATTGATGATGC                                                                     >  SRR4302536.5533218/1‑94 (MQ=60)

                           ATGGCAAGCCGATCAGCATCAGTCACTGCGCACCAGCGCGGCGCTGGCAAAACTGTACTGTGCACGCACCGCAATGGAAGTCATTGATGATGCG                                                                    <  SRR4302536.5431631/94‑1 (MQ=60)

                           ATGGCAAGCCGATCAGCATCAGTCACTGCGCACCAGCGCGGCGCTGGCAAAACTGTACTGTGCACGCACCGCAATGGAAGTCATTGATGATGCG                                                                    >  SRR4302536.6637780/1‑94 (MQ=60)

                            AGGCAAGCCGATCAGCATCAGTCACTGCGCACCAGCGCGGCGCTGGCAAAACCGTACTGTGCACGCACCGCAATGGAAGTAGTTGATGATGCGA                                                                   <  SRR4302536.3134282/94‑1 (MQ=60)

                             GGCAAGCCGATCAGCATCAGTCACTGCGCACCAGCGCGGCGCTGGCAAAACTGTACTGTGCACGCACCGGAATGGAAGTCATTGATGATGCGAT                                                                  >  SRR4302536.6788059/1‑94 (MQ=60)

                              GCAAGCCGATCAGCATCAGTCACTGCGCACCAGCGCGGCGCTGGCAAAACTGTACTGTGCACGCACCGCAATGGAAGTCATTGATGATGCGATT                                                                 <  SRR4302536.3106487/94‑1 (MQ=60)

                              CCAAGCCGATCAGCATCAGTCACTGCGCACCAGCGCGGCGCTGGCAAAACTGTACTGTGCACGCACCGCAATGGAAGTCATTGATGATGCGATT                                                                 <  SRR4302536.4263975/94‑1 (MQ=60)

                               CAAGCCGATCAGCATCAGTCACTGCGCACCAGCGCGGCGCTGGCAAAACTGTACTGTGCACGCACCGCAATGGAAGTCATTGATGATGCGATTC                                                                >  SRR4302536.5304354/1‑94 (MQ=60)

                               CAAGCCGATCAGCATCAGTCACTGCGCACCAGCGCGGCGCTGGCAAAACTGTACTGTGCACGCACCGCAATGGAAGTCATTGATGATGCGATTC                                                                >  SRR4302536.3442815/1‑94 (MQ=60)

                               CAAGCCGATCAGCATCAGTCACTGCGCACCAGCGCGGCGCTGGCAAAACTGTACTGTGCACGCACCGCAATGGAAGTCATTGATGATGCGATTC                                                                >  SRR4302536.1806078/1‑94 (MQ=60)

                               CAAGCCGATCAGCATCAGTCACTGCGCACCAGCGCGGCGCTGGCAAAACTGTACTGTGCACGCACCGCAATGGAAGTCATTGATGATGCGATTC                                                                >  SRR4302536.2379083/1‑94 (MQ=60)

                                AAGCCGATCAGCATCAGTCACTGCGCACCAGCGCGGCGCTGGCAAAACTGTACTGTGCACGCACCGCAATGGAAGTCATTGATGATTCGATTCA                                                               <  SRR4302536.6560400/94‑1 (MQ=60)

                                AAGCCGATCAGCATCAGTCACTGCGCACCAGCGCGGCGCTGGCAAAACTGTACTGTGCACGCACCGCAATGGAAGTCATTGATGATGCGATTCA                                                               >  SRR4302536.1289343/1‑94 (MQ=60)

                                  GCCGATCAGCATCAGTCACTGCGCACCAGCGCGGCGCTGGCAAAACTGTACTGTGCACGCACCGCAATGGAAGTCATTGATGATGCGATTCAAA                                                             >  SRR4302536.3373949/1‑94 (MQ=60)

                                     GATCAGCATCAGTCACTGCGCACCAGCGCGGCGCTGGCAAAACTGTACTGTGCACGCACCGCAATGGAAGTCATTGATGATGCGATTCAAATCA                                                          <  SRR4302536.6452615/94‑1 (MQ=60)

                                     GATCAGCATCAGTCACTGCGCACCAGCGCGGCGCTGGCAAAACTGTACTGTGCACGCACCGCAATGGAAGTCATTGATGATGCGATTCAAATCA                                                          <  SRR4302536.5352924/94‑1 (MQ=60)

                                      ATCAGCATCAGTCACTGCGCACCAGCGCGGCGCTGGCAAAACTGTACTGTGCACGCACCGCAATGGAAGTCATTGATGATGCGATTCAAATCAT                                                         <  SRR4302536.6646033/94‑1 (MQ=60)

                                        CAGCATCAGTCACTGCGCACCAGCGCGGCGCTGGCAAAACTGTACTGTGCACGCACCGCAATGGAAGTCATTGATGATGCGATTCAAATCATGG                                                       <  SRR4302536.1147833/94‑1 (MQ=60)

                                        CAGCATCAGTCACTGCGCACCAGCGCGGCGCTGGCAAAACTGTACTGTGCACGCACCGCAATGGAAGTCATTGATGATGCGATTCAAATCATGG                                                       >  SRR4302536.1622428/1‑94 (MQ=60)

                                         AGCATCAGTCACTGCGCACCAGCGCGGCGCTGGCAAAACTGTACTGTGCACGCACCGCAATGGAAGTCATTGATGATGCGATTCAAATCATGGG                                                      >  SRR4302536.4194226/1‑94 (MQ=60)

                                         AGCATCAGTCACTGCGCACCAGCGCGGCGCTGGCAAAACTGTACTGTGCACGCACCGCAATGGAAGTCATTGATGATGCGATTCAAATCATGGG                                                      >  SRR4302536.1073508/1‑94 (MQ=60)

                                           CATCAGTCACTGCGCACCAGCGCGGCGCTGGCAAAACTGTACTGTGCACGCACCGCAATGGAAGTCATTGATGATGCGATTCAAATCATGGGCG                                                    >  SRR4302536.4137617/1‑94 (MQ=60)

                                           CATCACTCACTGCGCACCAGCGCGGCGCTGGCAAAACTGTACTGTGCACGCACCGCAATGGAAGTCATTGATGATGCGATTCAAATCATGGGCG                                                    >  SRR4302536.354323/1‑94 (MQ=60)

                                            ATCAGTCACTGCGCACCAGCGCGGCGCTGGCAAAACTGTACTGTGCACGCACCGCAATGGAAGTCATTGATGATGCGATTCAAATCATGGGCGG                                                   >  SRR4302536.868465/1‑94 (MQ=60)

                                            ATCAGTCACTGCGCACCAGCGCGGCGCTGGCAAAACTGTACTGTGCACGCACCGCAATGGAAGTCATTGATGATGCGATTCAAATCATGGGCGG                                                   >  SRR4302536.1648012/1‑94 (MQ=60)

                                            ATCAGTCACTGCGCACCAGCGCGGCGCTGGCAAAACTGTACTGTGCACGCACCGCAATGGAAGTCATTGATGATGCGATTCAAATCATGGGCGG                                                   >  SRR4302536.1287367/1‑94 (MQ=60)

                                            ATCAGTCACTGCGCACCAGCGCGGCGCTGGCAAAACTGTACTGTGCACGCACCGCAATGGAAGTCATTGATGATGCGATTCAAATCATGGGCGG                                                   <  SRR4302536.3004531/94‑1 (MQ=60)

                                               AGTCACTGCGCACCAGCGCGGCGCTGGCAAAACTGTACTGTGCACGCACCGCAATGGAAGTCATTGATGATGCGATTCAAATCATGGGCGGTCT                                                <  SRR4302536.5385748/94‑1 (MQ=60)

                                               AGTCACTGCGCACCAGCGCGGCGCTGGCAAAACTGTACTGTGCACGCACCGCAATGGAAGTCATTGATGATGCGATTCAAATCATGGGCGGTCT                                                <  SRR4302536.5580068/94‑1 (MQ=60)

                                               AGTCACTGCGCACCAGCGCGGCGCTGGCAAAACTGTACTGTGCACGCACCGCAATGGAAGTCATTGATGATGCGATTCAAATCATGGGCGGTCT                                                <  SRR4302536.6376485/94‑1 (MQ=60)

                                                GTCACTGCGCACCAGCGCGGCGCTGGCAAAACTGTACTGTGCACGCACCGCAATGGAAGTCATTGATGATGCGATTCAAATCATGGGCGGTCTG                                               <  SRR4302536.5986904/94‑1 (MQ=60)

                                                  CACTGCGCACCAGCGCGGCGCTGGCAAAACTGTACTGTGCACGCACCGCAATGGAAGTCATTGATGATGCGATTCAAATCATGGGCGGTCTGGG                                             <  SRR4302536.1913699/94‑1 (MQ=60)

                                                    CTGCGCACCAGCGCGGCGCTGGCAAAACTGTACTGTGCACGCACCGCAATGGAAGTCATTGATGATGCGATTCAAATCATGGGCGGTCTGGGCT                                           <  SRR4302536.5954799/94‑1 (MQ=60)

                                                    CTGCGCACCAGCGCGGCGCTGGCAAAACTGTACTGTGCACGCACCGCAATGGAAGTCATTGATGATGCGATTCAAATCATGGGCGGTCTGGGCT                                           <  SRR4302536.6000939/94‑1 (MQ=60)

                                                     TGCGCACCAGCGCGGCGCTGGCAAAACTGTACTGTGCACGCACCGCAATGGAAGTCATTGATGATGCGATTCAAATCATGGGCGGTCTGGGCTA                                          <  SRR4302536.2062107/94‑1 (MQ=60)

                                                      GCGCACCAGCGCGGCGCTGGCAAAACTGTACTGTGCACGCACCGCAATGGAAGTCATTGATGATGCGATTCAAATCATGGGCGGTCTGGGCTAT                                         <  SRR4302536.3462119/94‑1 (MQ=60)

                                                      GCGCACCAGCGCGGCGCTGGCAAAACTGTACTGTGCACGCACCGCAATGGAAGTCATTGATGATGCGATTCAAATCATGGGCGGTCTGGGCTAT                                         <  SRR4302536.20870/94‑1 (MQ=60)

                                                       CGCACCAGCGCGGCGCTGGCAAAACTGTACTGTGCACGCACCGCAATGGAAGTCATTGATGATGCGATTCAAATCATGGGCGGTCTGGGCTATA                                        <  SRR4302536.24972/94‑1 (MQ=60)

                                                        GCACCAGCGCGGCGCTGGCAAAACTGTACTGTGCACGCACCGCAATGGAAGTCATTGATGATGCGATTCAAATCATGGGCGGTCTGGGCTATAC                                       >  SRR4302536.2468999/1‑94 (MQ=60)

                                                         CACCAGCGCGGCGCTGGCAAAACTGTACTGTGCACGCACCGCAATGGAAGTCATTGATGATGCGATTCAAATCATGGGCGGTCTGGGCTATACC                                      >  SRR4302536.4801568/1‑94 (MQ=60)

                                                         CACCAGCGCGGCGCTGGCAAAACTGTACTGTGCACGCACCGCAATGGAAGTCATTGATGATGCGATTCAAATCATGGGCGGTCTGGGCTATACC                                      <  SRR4302536.3238482/94‑1 (MQ=60)

                                                         CACCAGCGCGGCGCTGGCAAAACTGTACTGTGCACGCACCGCAATGGAAGTCATTGATGATGCGATTCAAATCATGGGCGGTCTGGGCTATACC                                      <  SRR4302536.6839056/94‑1 (MQ=60)

                                                          ACCAGCGCGGCGCTGGCAAAACTGTACTGTGCACGCACCGCAATGGAAGTCATTGATGATGCGATTCAAATCATGGGCGGTCTGGGCTATACCG                                     >  SRR4302536.1660790/1‑94 (MQ=60)

                                                          ACCAGCGCGGCGCTGGCAAAACTGTACTGTGCACGCACCGCAATGGAAGTCATTGATGATGCGATTCAAATCATGGGCGGTCTGGGCTATACCG                                     >  SRR4302536.4414784/1‑94 (MQ=60)

                                                          ACCAGCGCGGCGCTGGCAAAACTGTACTGTGCACGCACCGCAATGGAAGTCATTGATAATGCGATTCAAATCATGGGCGGTCTGGGCTATACCG                                     <  SRR4302536.307624/94‑1 (MQ=60)

                                                             AGCGCGGCGCTGGCAAAACTGTACTGTGCACGCACCGCAATGGAAGTCATTGATGATGCGATTCAAATCATGGGCGGTCTGGGCTATACCGATG                                  >  SRR4302536.3747888/1‑94 (MQ=60)

                                                             AGCGCGGCGCTGGCAAAACTGTACTGTGCACGCACCGCAATGGAAGTCATTGATGATGCGATTCAAATCATGGGCGGTCTGGGCTATACCGATG                                  >  SRR4302536.4895026/1‑94 (MQ=60)

                                                             AGCGCGGCGCTGGCAAAACTGTACTGTGCACGCACCGCAATGGAAGTCATTGATGATGCGATTCAAATCATGGGCGGTCTGGGCTATACCGATG                                  <  SRR4302536.5435248/94‑1 (MQ=60)

                                                              GCGCGGCGCTGGCAAAACTGTACTGTGCACGCACCGCAATGGAAGTCATTGATGATGCGATTCAAATCATGGGCGGTCTGGGCTATACCGATGA                                 <  SRR4302536.5156613/94‑1 (MQ=60)

                                                              GCGCGGCGCTGGCAAAACTGTACTGTGCACGCACCGCAATGGAAGTCATTGATGATGCGATTCAAATCATGGGCGGTCTGGGCTATACCGATGA                                 <  SRR4302536.6607293/94‑1 (MQ=60)

                                                               CGCGGCGCTGGCAAAACTGTACTGTGCACGCACCGCAATGGAAGTCATTGATGATGCGATTCAAATCATGGGCGGTCTGGGCTATACCGATGAG                                <  SRR4302536.1814522/94‑1 (MQ=60)

                                                               CGCGGCGCTGGCAAAACTGTACTGTGCACGCACCGCAATGGAAGTCATTGATGATGCGATTCAAATCATGGGCGGTCTGGGCTATACCGATGAG                                <  SRR4302536.6829053/94‑1 (MQ=60)

                                                               CGCGGCGCTGGCAAAACTGTACTGTGCACGCACCGCAATGGAAGTCATTGATGATGCGATTCAAATCATGGGCGGTCTGGGCTATACCGATGAG                                <  SRR4302536.1944076/94‑1 (MQ=60)

                                                                GCGGCGCTGGCAAAACTGTACTGTGCACGCACCGCAATGGAAGTCATTGATGATGCGATTCAAATCATGGGCGGTCTGGGCTATACCGATGAGG                               >  SRR4302536.5467683/1‑94 (MQ=60)

                                                                GCGGCGCTGGCAAAACTGTACTGTGCACGCACCGCAATGGAAGTCATTGATGATGCGATTCAAATCATGGGCGGTCTGGGCTATACCGATGAGG                               <  SRR4302536.1456177/94‑1 (MQ=60)

                                                                GCGGCGCTGGCAAAACGTTACTGTGCACGCACCGCAATGGAAGTCATTGATGATGCGATTCAAATCATGGGCGGTCTGGGCTATACCGATGAGG                               <  SRR4302536.2703067/94‑1 (MQ=60)

                                                                  GGCGCTGGCAAAACTGTACTGTGCACGCACCGCAATGGAAGTCATTGATGATGCGATTCAAATCATGGGCGGTCTGGGCTATACCGATGAGGCG                             >  SRR4302536.4735910/1‑94 (MQ=60)

                                                                  GGCGCTGGCAAAACTGTACTGTGCACGCACCGCAATGGAAGTCATTGATGATGCGATTCAAATCATGGGCGGTCTGGGCTATACCGATGAGGCG                             <  SRR4302536.5355465/94‑1 (MQ=60)

                                                                  GGCGCTGGCAAAACTGTACTGTGCACGCACCGCAATGGAAGTCATTGATGATGCGATTCAAATCATGGGCGGTCTGGGCTATACCGATGAGGCG                             >  SRR4302536.4174764/1‑94 (MQ=60)

                                                                      CTGGCAAAACTGTACTGTGCACGCACCGCAATGGAAGTCATTGATGATGCGATTCAAATCATGGGCGGTCTGGGCTATACCGATGAGGCGCGCG                         >  SRR4302536.2089938/1‑94 (MQ=60)

                                                                      CTGGCAAAACTGTACTGTGCACGCACCGCAATGGAAGTCATTGATGATGCGATTCAAATCATGGGCGGTCTGGGCTATACCGATGAGGCGCGCG                         >  SRR4302536.1369251/1‑94 (MQ=60)

                                                                      CTGGCAAAACTGTACTGTGCACGCACCGCAATGGAAGTCATTGATGATGCGATTCAAATCATGGGCGGTCTGGGCTATACCGATGAGGCGCGCG                         <  SRR4302536.4997557/94‑1 (MQ=60)

                                                                        GGCAAAACTGTACTGTGCACGCACCGCAATGGAAGTCATTGATGATGCGATTCAAATCATGGGCGGTCTGGGCTATACCGATGAGGCGCGCGTC                       >  SRR4302536.5414385/1‑94 (MQ=60)

                                                                         GCAAAACTGTACTGTGCACGCACCGCAATGGAAGTCATTGATGATGCGATTCAAATCATGGGCGGTCTGGGCTATACCGATGAGGCGCGCGTCT                      <  SRR4302536.1576397/94‑1 (MQ=60)

                                                                          CAAAACTGTACTGTGCACGCCCCGCAATGGAAGTCATTGATGATGCGATTCAAATCATGGGCGCTCTGGGCTATACCCATGAGGGGCGCGTCTC                     <  SRR4302536.6318722/94‑1 (MQ=60)

                                                                          CAAAACTGTACTGTGCACGCACCGCAATGGAAGTCATTGATGATGCGATTCAAATCATGGGCGGTCTGGGCTATACCGATGAGGCGCGCGTCTC                     >  SRR4302536.226935/1‑94 (MQ=60)

                                                                          CAAAACTGTACTGTGCACGCACCGCAATGGAAGTCATTGATGATGCGATTCAAATCATGGGCGGTCTGGGCTATACCGATGAGGCGCGCGTCTC                     <  SRR4302536.5357733/94‑1 (MQ=60)

                                                                          CAAAACTGTACTGTGCACGCACCGCAATGGAAGTCATTGATGATGCGATTCAAATCATGGGCGGTCTGGGCTATACCGATGAGGCGCGCGTCTC                     <  SRR4302536.530827/94‑1 (MQ=60)

                                                                          CAAAACTGTACTGTGCACGCACCGCAATGGAAGTCATTGATGATGCGATTCAAATCATGGGCGGTCTGGGCTATACCGATGAGGCGCGCGTCTC                     >  SRR4302536.2788666/1‑94 (MQ=60)

                                                                           AAAACTGTACTGTGCACGCACCGCAATGGAAGTCATTGATGATGCGATTCAAATCATGGGCGGTCTGGGCTATACCGATGAGGCGCGCGTCTCC                    <  SRR4302536.2593048/94‑1 (MQ=60)

                                                                            AAACTGTACTGTGCACGCACCGCAATGGAAGTCATTGATGATGCGATTCAAATCATGGGCGGTCTGGGCTATACCGATGAGGCGCGCGTCTCCC                   >  SRR4302536.5529996/1‑94 (MQ=60)

                                                                            AAACTGTACTGTGCACGCACCGCAATGGAAGTCATTGATGATGCGATTCAAATCATGGGCGGTCTGGGCTATACCGATGAGGCGCGCGTCTCCC                   >  SRR4302536.1949057/1‑94 (MQ=60)

                                                                            AAACTGTACTGTGCACGCACCGCAATGGAAGTCATTGATGATGCGATTCAAATCATGGGCGGTCTGGGCTATACCGATGAGGCGCGCGTCTCCC                   >  SRR4302536.6037590/1‑94 (MQ=60)

                                                                              ACTGTACTGTGCACGCACCGCAATGGAAGTCATTGATGATGCGATTCAAATCATGGGCGGTCTGGGCTATACCGATGAGGCGCGCGTCTCCCGC                 >  SRR4302536.1728173/1‑94 (MQ=60)

                                                                              ACTGTACTGTGCACGCACCGCAATGGAAGTCATTGATGATGCGATTCAAATCATGGGCGGTCTGGGCTATACCGATGAGGCGCGCGTCTCCCGC                 >  SRR4302536.5537049/1‑94 (MQ=60)

                                                                               CTGTACTGTGCACGCACCGCAATGGAAGTCATTGATGATGCGATTCAAATCATGGGCGGTCTGGGCTATACCGATGAGGCGCGCGTCTCCCGCT                <  SRR4302536.2585401/94‑1 (MQ=60)

                                                                                 GTACTGTGCACGCACCGCAATGGAAGTCATTGATGATGCGATTCAAATCATGGGCGGTCTGGGCTATACCGATGAGGCGCGCGTCTCCCGCTTC              <  SRR4302536.4824457/94‑1 (MQ=60)

                                                                                 GTACTGTGCACGCACCGCAATGGAAGTCATTGATGATGCGATTCAAATCATGGGCGGTCTGGGCTATACCGATGAGGCGCGCGTCTCCCGCTTC              >  SRR4302536.2865683/1‑94 (MQ=60)

                                                                                  TACTGCGCACGCACCGCAATGGAAGTCATTGATGATGCGATTCAAATCATGGGCGGTCTGGGCTATACCGATGAGGCGCGCGTCTCCCGCTTCT             <  SRR4302536.5749306/94‑1 (MQ=60)

                                                                                    CTGTGCACGCACCGCAATGGAAGTCATTGATGATGCGATTCAAATCATGGGCGGTCTGGGCTATACCGATGAGGCGCGCGTCTCCCGCTTCTGG           >  SRR4302536.5838743/1‑94 (MQ=60)

                                                                                     TGTGCACGCACCGCAATGGAAGTCATTGATGATGCGATTCAAATCATGGGCGGTCTGGGCTATACCGATGAGGCGCGCGTCTCCCGCTTCTGGC          <  SRR4302536.2956294/94‑1 (MQ=60)

                                                                                       TGCACGCACCGCAATGGAAGTCATTGATGATGCGATTCAAATCATGGGCGGTCTGGGCTATACCGATGAGGCGCGCGTCTCCCGCTTCTGGCGT        <  SRR4302536.135017/94‑1 (MQ=60)

                                                                                       TGCACGCACCGCAATGGAAGTCATTGATGATGCGATTCAAATCATGGGCGGTCTGGGCTATACCGATGAGGCGCGCGTCTCCCGCTTCTGGCGT        >  SRR4302536.790256/1‑94 (MQ=60)

                                                                                         CACGCACCGCAATGGAAGTCATTGATGATGCGATTCAAATCATGGGCGGTCTGGGCTATACCGATGAGGCGCGCGTCTCCCGCTTCTGGCGTGA      >  SRR4302536.3708248/1‑94 (MQ=60)

                                                                                           CGCACCGCAATGGAAGTCATTGATGATGCGATTCAAATCATGGGCGGTCTGGGCTATACCGATGAGGCGCGCGTCTTCCGCTTCTGGCGTGCTG    >  SRR4302536.4055552/1‑94 (MQ=60)

                                                                                           CGCACCGCAATGGAAGTCATTGATGATGCGATTCAAATCATGGGCGGTCTGGGCTATACCGATGAGGCGCGCGTCTCCCGCTTCTGGCGTGATG    <  SRR4302536.5573176/94‑1 (MQ=60)

                                                                                           CGCACCGCAATGGAAGTCATTGATGATGCGATTCAAATCATGGGCGGTCTGGGCTATACCGATGAGGCGCGCGTCTCCCGCTTCTGGCGTGATG    >  SRR4302536.6164034/1‑94 (MQ=60)

                                                                                            GCACCGCAATGGAAGTCATTGATGATGCGATTCAAATCATGGGCGGTCTGGGCTATACCGATGAGGCGCGCGTCTCCCGCTTCTGGCGTGATGT   <  SRR4302536.1263243/94‑1 (MQ=60)

                                                                                             CACCGCAATGGAAGTCATTGATGATGCGATTCAAATCATGGGCGGTCTGGGCTATACCGATGAGGCGCGCGTCTCCCGCTTCTGGCGTGATGTC  >  SRR4302536.4399568/1‑94 (MQ=60)

                                                                                             CACCGAAATGGAAGTCATTGATGATGCGATTCAAATCATGGGCGGTCTGGGCTATCCCGATGAGGCGCGCGTCTCCCGCTTCTGGCGTGATGTC  >  SRR4302536.3321410/1‑94 (MQ=60)

CATGCGCAACATGGTGCTGAAAGTGGCATGGCAAGCCGATCAGCATCAGTCACTGCGCACCAGCGCGGCGCTGGCAAAACTGTACTGTGCACGTACCGCAATGGAAGTCATTGATGATGCGATTCAAATCATGGGCGGTCTGGGCTATACCGATGAGGCGCGCGTCTCCCGCTTCTGGCGTGATGTC  >  NC_000913/1776098‑1776284

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`