Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 1475 266.7 13469680 98.2% 13227225 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,980,940 +C coding (1/363 nt)
coding (627/627 nt)		 araH ←
araH ←		 ABC‑type arabinose transport system permease component
ABC‑type arabinose transport system permease component

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,980,9391.C100.0% 656.6 / NA 206A210G (GCC→GGC) araHABC‑type arabinose transport system permease component
Reads supporting (aligned to +/- strand):  ref base . (0/0);  new base C (110/96);  total (110/96)

Only 100 of 235 total aligned reads displayed.

AGAATAATTCCGGCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGG‑CTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACGCGACGGT  >  NC_000913/1980849‑1981026
                                                                                           |                                                                                       
aGAATAATTCCGGCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGG‑cc                                                                                       >  2:6402607/1‑92 (MQ=255)
 gAATAATTCCGGCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGG‑cct                                                                                      >  1:3813792/1‑91 (MQ=255)
 gAATAATTCCGGCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGG‑ccc                                                                                      >  2:196600/1‑91 (MQ=255)
   ataatTCCGGCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGG‑cctct                                                                                    <  1:4852713/93‑5 (MQ=255)
   ataatTCCGGCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGG‑cctct                                                                                    <  1:1707713/93‑5 (MQ=255)
     aatTCCGGCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTc                                                                                   <  2:2848401/93‑1 (MQ=255)
       ttCCGGCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGt                                                                                 >  2:1856972/1‑93 (MQ=255)
        tCCGGCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGtt                                                                                <  2:5416072/93‑1 (MQ=255)
         ccGGCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTc                                                                               >  2:482516/1‑93 (MQ=255)
            gCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCg                                                                            >  2:6573704/1‑93 (MQ=255)
            gCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCg                                                                            >  1:1598681/1‑93 (MQ=255)
              tATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGcc                                                                          >  2:4025709/1‑93 (MQ=255)
              tATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGcc                                                                          <  2:3630649/93‑1 (MQ=255)
                 cGCTGATACCAGTCATGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAAt                                                                       <  2:2588948/93‑1 (MQ=255)
                  gCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATc                                                                      <  2:2145619/93‑1 (MQ=255)
                  gCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATc                                                                      <  1:618534/93‑1 (MQ=255)
                  gCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATc                                                                      <  1:3256188/93‑1 (MQ=255)
                    tGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGc                                                                    >  2:6692758/1‑93 (MQ=255)
                    tGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGc                                                                    <  2:3106995/93‑1 (MQ=255)
                    tGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGc                                                                    >  2:4262543/1‑93 (MQ=255)
                      aTACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCa                                                                  <  1:4881844/93‑1 (MQ=255)
                       tACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAg                                                                 <  2:5809948/93‑1 (MQ=255)
                         ccAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAggg                                                               >  2:3797495/1‑93 (MQ=255)
                         ccAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAggg                                                               >  1:2724647/1‑93 (MQ=255)
                         ccAGGCCTGAGAGAACAAAGATAATAATTTTGGGGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAggg                                                               <  2:4966290/93‑1 (MQ=255)
                          cAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAgggg                                                              >  1:6360011/1‑92 (MQ=255)
                          cAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAgggg                                                              >  1:3957892/1‑92 (MQ=255)
                          cAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGgt                                                              >  1:5081352/1‑93 (MQ=255)
                           aGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGgtg                                                             <  2:5675700/93‑1 (MQ=255)
                            ggCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGgtgt                                                            >  1:4720419/1‑93 (MQ=255)
                            ggCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGgtgt                                                            >  1:2339691/1‑93 (MQ=255)
                             gCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGtt                                                           <  2:366099/93‑1 (MQ=255)
                               cTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTAc                                                         >  1:3338125/1‑93 (MQ=255)
                                tGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACg                                                        <  2:5086575/93‑1 (MQ=255)
                                 gagagaACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGa                                                       <  2:5489279/93‑1 (MQ=255)
                                 gagagaACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGa                                                       >  1:5095629/1‑93 (MQ=255)
                                  agagaACAAAGATAATAATTTTGGTGCGAACACCCGGTCCCCCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGAc                                                      <  2:2357307/93‑1 (MQ=255)
                                   gagaACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGAcc                                                     >  1:5234167/1‑93 (MQ=255)
                                    agaACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCa                                                    >  2:4578349/1‑93 (MQ=255)
                                    agaACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCa                                                    >  1:3176596/1‑93 (MQ=255)
                                    agaACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCa                                                    >  1:2505084/1‑93 (MQ=255)
                                     gaACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCaa                                                   <  2:3462294/93‑1 (MQ=255)
                                     gaACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCaa                                                   >  2:5141436/1‑93 (MQ=255)
                                     gaACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCaa                                                   >  2:2947963/1‑93 (MQ=255)
                                      aaCAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCaaa                                                  <  1:1959195/93‑1 (MQ=255)
                                       aCAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAg                                                 >  1:6708476/1‑93 (MQ=255)
                                       aCAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAg                                                 <  2:3068705/93‑1 (MQ=255)
                                       aCAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAg                                                 <  1:6049692/93‑1 (MQ=255)
                                       aCAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAg                                                 <  1:527475/93‑1 (MQ=255)
                                        cAAAGATACTAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAgg                                                >  1:6545877/1‑93 (MQ=255)
                                        cAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAgg                                                >  1:6424767/1‑93 (MQ=255)
                                        cAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAgg                                                <  2:5177491/93‑1 (MQ=255)
                                         aaaGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAggt                                               >  2:1582108/1‑93 (MQ=255)
                                         aaaGATAATAATTTTGGTGCAAACAACCGGTACCCCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAggt                                               <  1:1234013/93‑1 (MQ=255)
                                          aaaataataATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAggtg                                              <  1:2627584/90‑1 (MQ=255)
                                          aaGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAggtg                                              <  2:468474/93‑1 (MQ=255)
                                           aGATAATAATTTTGGTGCGAACAACCGGTACCCCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAggtgg                                             <  1:1756051/93‑1 (MQ=255)
                                            gATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAggtggt                                            >  2:3868933/1‑93 (MQ=255)
                                             ataataATTTTGGTGCGAACAACCGGTACCCCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGtt                                           <  1:438601/93‑1 (MQ=255)
                                              taataaTTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGttt                                          >  2:4674191/1‑93 (MQ=255)
                                              aaataatTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGttt                                          <  1:2458123/92‑1 (MQ=255)
                                                ataatTTTGGTGCGAACACCCGGTACCCCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTa                                        <  2:2453813/93‑1 (MQ=255)
                                                 taatTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTAt                                       >  2:3009971/1‑93 (MQ=255)
                                                 taatTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTAt                                       >  2:763832/1‑93 (MQ=255)
                                                 taatTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTCGTTTTAt                                       <  1:5403349/93‑1 (MQ=255)
                                                   atTTTGGTGCGACCAACCGTTACCCCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTc                                     <  1:3447481/93‑1 (MQ=255)
                                                     tttGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTcag                                   >  2:4473529/1‑93 (MQ=255)
                                                      tgggTGCGAACAACCGGTACCCCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTcagc                                  <  1:5457310/91‑1 (MQ=255)
                                                        ggTGCGAACAACCGGTACACTCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTcagcag                                >  1:6572083/1‑93 (MQ=255)
                                                           gCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCaa                             <  2:6227294/93‑1 (MQ=255)
                                                              aacaacCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAAcc                          >  1:5693978/1‑93 (MQ=255)
                                                                 aacCGGTCCACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCaaa                       <  2:1509375/93‑1 (MQ=255)
                                                                 aacCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCaaa                       >  1:1106761/1‑93 (MQ=255)
                                                                  acCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAg                      <  1:4068541/93‑1 (MQ=255)
                                                                  acCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAg                      >  1:561108/1‑93 (MQ=255)
                                                                  acCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAg                      <  1:5892407/93‑1 (MQ=255)
                                                                   ccGGTACACCCGACAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCCAACCAAAGa                     >  1:1048931/1‑93 (MQ=255)
                                                                    cGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGAt                    <  2:5507968/93‑1 (MQ=255)
                                                                      gTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATaa                  >  2:126637/1‑93 (MQ=255)
                                                                      gTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATaa                  <  1:6574132/93‑1 (MQ=255)
                                                                        acacCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATc                <  2:1217986/93‑1 (MQ=255)
                                                                        acacCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATc                >  2:5759830/1‑93 (MQ=255)
                                                                        acacCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATc                <  2:4050093/93‑1 (MQ=255)
                                                                         cccccGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCa               <  1:514854/91‑1 (MQ=255)
                                                                         cacCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCa               >  1:209977/1‑93 (MQ=255)
                                                                          acCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAg              >  2:1772486/1‑93 (MQ=255)
                                                                          acCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAg              <  1:620073/93‑1 (MQ=255)
                                                                           cccGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGa             <  1:3095546/93‑1 (MQ=255)
                                                                            ccGCCAGACGCGCGGCCTCGTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGac            <  1:6222621/93‑1 (MQ=255)
                                                                             cGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGaca           <  1:2001423/93‑1 (MQ=255)
                                                                              gCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGacac          <  1:3678727/93‑1 (MQ=255)
                                                                              gCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGGTTTATTCAGCAGCAAACCAAAGATAATCAGacag          >  1:2940628/1‑92 (MQ=255)
                                                                                cAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACAcgc        >  2:4211549/1‑93 (MQ=255)
                                                                                cAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACAcgc        <  1:5025039/93‑1 (MQ=255)
                                                                                 aGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACAcgcg       >  1:4300310/1‑93 (MQ=255)
                                                                                  gACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACGCGa      <  1:5835274/93‑1 (MQ=255)
                                                                                  gACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACGCGa      <  2:2906220/93‑1 (MQ=255)
                                                                                   aCGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACGCGAc     <  2:4929423/93‑1 (MQ=255)
                                                                                   aCGCGCGGCCTCTTCGTGCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACGCGAc     <  2:3907180/93‑1 (MQ=255)
                                                                                     gcgcgGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACGCGACgg   <  1:5565717/93‑1 (MQ=255)
                                                                                           |                                                                                       
AGAATAATTCCGGCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGG‑CTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACGCGACGGT  >  NC_000913/1980849‑1981026

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
CAGAATAATTCCGGCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑G‑CTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACGCGACGGTGAGCCA  >  NC_000913/1980848‑1981032
                                                                                              |                                                                                            
CAGAATAATTCCGGCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑G‑CC                                                                                             >  SRR4302536.612317/1‑94 (MQ=60)
CAGAATAATTCCGGCTATCGATGATACCAGGACTGAGAGGACAAAGATAATAATTTTGGTGCGAACAACCGGTACACTCGCCAGAAGCGCG‑G‑CT                                                                                             >  SRR4302536.6021843/1‑94 (MQ=60)
 AGAATAATTCCGGCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑G‑Cct                                                                                            >  SRR4302536.6232063/1‑92 (MQ=60)
 AGAATAATTCCGGCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑G‑Cct                                                                                            >  SRR4302536.3927470/1‑92 (MQ=60)
 AGAATAATTCCGGCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑G‑Cct                                                                                            >  SRR4302536.535637/1‑92 (MQ=60)
    ATAATTCCGGCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTT                                                                                          <  SRR4302536.1757141/94‑1 (MQ=60)
    ATAATTCCGGCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTT                                                                                          <  SRR4302536.2122818/94‑1 (MQ=60)
    ATAATTCCGGCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTT                                                                                          <  SRR4302536.4998734/94‑1 (MQ=60)
            GGCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACCCCCGCCAGACGCGCG‑GCCTCTTCGTTCCCG                                                                                  <  SRR4302536.5017976/94‑1 (MQ=60)
            GGCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCG                                                                                  >  SRR4302536.1645364/1‑94 (MQ=60)
            GGCTATCGCTGATACCAGGCATGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCG                                                                                  >  SRR4302536.6754700/1‑94 (MQ=60)
             GCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGC                                                                                 >  SRR4302536.5065456/1‑94 (MQ=60)
                 TCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAAT                                                                             >  SRR4302536.1699580/1‑94 (MQ=60)
                 TCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAAT                                                                             <  SRR4302536.4339423/94‑1 (MQ=60)
                   GCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCG                                                                           <  SRR4302536.636929/94‑1 (MQ=60)
                   GCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCG                                                                           <  SRR4302536.3351635/94‑1 (MQ=60)
                   GCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCG                                                                           <  SRR4302536.5646032/94‑1 (MQ=60)
                     TGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCC                                                                         >  SRR4302536.6769574/1‑94 (MQ=60)
                       ATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAG                                                                       <  SRR4302536.5028717/94‑1 (MQ=60)
                        TACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGG                                                                      <  SRR4302536.6819276/94‑1 (MQ=60)
                         ACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGG                                                                     >  SRR4302536.2805894/1‑94 (MQ=60)
                          CCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGT                                                                    >  SRR4302536.5233415/1‑94 (MQ=60)
                          CCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGG                                                                    >  SRR4302536.6549497/1‑94 (MQ=60)
                          CCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGG                                                                    >  SRR4302536.4075420/1‑94 (MQ=60)
                            AGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGT                                                                  >  SRR4302536.4862449/1‑94 (MQ=60)
                            AGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGT                                                                  >  SRR4302536.6278460/1‑94 (MQ=60)
                            AGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGT                                                                  >  SRR4302536.2410667/1‑94 (MQ=60)
                             GGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTT                                                                 >  SRR4302536.6380744/1‑94 (MQ=60)
                             GGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTT                                                                 <  SRR4302536.2746876/94‑1 (MQ=60)
                              GCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTA                                                                <  SRR4302536.2575619/94‑1 (MQ=60)
                               CCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTAC                                                               >  SRR4302536.3437000/1‑94 (MQ=60)
                                CTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACG                                                              >  SRR4302536.2945170/1‑94 (MQ=60)
                                 TGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGA                                                             >  SRR4302536.5248002/1‑94 (MQ=60)
                                   AGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACC                                                           >  SRR4302536.5390121/1‑94 (MQ=60)
                                   AGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACC                                                           >  SRR4302536.3355949/1‑94 (MQ=60)
                                   AGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGCGTTACGACC                                                           >  SRR4302536.4885839/1‑94 (MQ=60)
                                    GAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCA                                                          >  SRR4302536.3269707/1‑94 (MQ=60)
                                    GAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCA                                                          >  SRR4302536.2580626/1‑94 (MQ=60)
                                       AACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAG                                                       >  SRR4302536.6907673/1‑94 (MQ=60)
                                       AACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAG                                                       <  SRR4302536.5749298/94‑1 (MQ=60)
                                       AACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAG                                                       <  SRR4302536.2018095/94‑1 (MQ=60)
                                       AACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAG                                                       >  SRR4302536.3895798/1‑94 (MQ=60)
                                       AACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAG                                                       <  SRR4302536.5273685/94‑1 (MQ=60)
                                        ACAAAGATACTAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGG                                                      >  SRR4302536.6740804/1‑94 (MQ=60)
                                        ACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGG                                                      <  SRR4302536.540968/94‑1 (MQ=60)
                                        ACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGG                                                      <  SRR4302536.837899/94‑1 (MQ=60)
                                        ACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGG                                                      >  SRR4302536.6616803/1‑94 (MQ=60)
                                        ACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGG                                                      <  SRR4302536.6230132/94‑1 (MQ=60)
                                        ACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGG                                                      >  SRR4302536.1117772/1‑94 (MQ=60)
                                         aaaatATAATAATTTTGGTCCGAACAACCGGTACCCCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGT                                                     <  SRR4302536.1568876/89‑1 (MQ=60)
                                          AAAGATAATAATTTTGGTGCAAACAACCGGTACCCCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTG                                                    <  SRR4302536.1271065/94‑1 (MQ=60)
                                           AAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGG                                                   >  SRR4302536.3262501/1‑94 (MQ=60)
                                           AAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGG                                                   >  SRR4302536.6611418/1‑94 (MQ=60)
                                           AAAATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGG                                                   <  SRR4302536.2706369/94‑1 (MQ=60)
                                            AGATAATAATTTTGGTGCGAACAACCGGTACCCCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGT                                                  <  SRR4302536.1808338/94‑1 (MQ=60)
                                            AGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTGGTTCCCGCCAATCGCCAGGGAGATACGACCAAAGGTGGT                                                  >  SRR4302536.6428150/1‑94 (MQ=60)
                                            AGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGT                                                  <  SRR4302536.5747185/94‑1 (MQ=60)
                                             AATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTT                                                 <  SRR4302536.555092/94‑1 (MQ=60)
                                             AATAATAATTTCGGTGCGAAGACCCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTT                                                 <  SRR4302536.2609486/94‑1 (MQ=60)
                                              ATAATAATTTTGGTGCGAACAACCGGTACCCCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTT                                                <  SRR4302536.450124/94‑1 (MQ=60)
                                              ATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTT                                                >  SRR4302536.33949/1‑94 (MQ=60)
                                              ATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATAGCCAGGGTGTTACGACCAAAGGTGGTTT                                                >  SRR4302536.2188681/1‑94 (MQ=60)
                                               TAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTT                                               <  SRR4302536.3961056/94‑1 (MQ=60)
                                               AAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTT                                               <  SRR4302536.2532342/94‑1 (MQ=60)
                                                 ATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTAT                                             >  SRR4302536.3529026/1‑94 (MQ=60)
                                                  TAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATT                                            <  SRR4302536.5480396/94‑1 (MQ=60)
                                                  TAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTCGTTTTATT                                            <  SRR4302536.5564757/94‑1 (MQ=60)
                                                   AATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTC                                           <  SRR4302536.3717292/94‑1 (MQ=60)
                                                    ATTTTGGTGCGACCAACCGTTACCCCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCA                                          <  SRR4302536.3550150/94‑1 (MQ=60)
                                                       TTGGTGCGACCACCCGGTACCCCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCA                                       <  SRR4302536.5250004/94‑1 (MQ=60)
                                                       TTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCA                                       <  SRR4302536.1923425/94‑1 (MQ=60)
                                                       TTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCA                                       <  SRR4302536.6496303/94‑1 (MQ=60)
                                                       TGGGTGCGAACAACCGGTACCCCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCA                                       <  SRR4302536.5620488/94‑1 (MQ=60)
                                                        TGGTGCGAACAACCGGTACACTCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAG                                      >  SRR4302536.6767660/1‑94 (MQ=60)
                                                        TGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAG                                      >  SRR4302536.5240419/1‑94 (MQ=60)
                                                          GTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCA                                    >  SRR4302536.2027833/1‑94 (MQ=60)
                                                          GTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCA                                    >  SRR4302536.1171330/1‑94 (MQ=60)
                                                             CGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAAC                                 >  SRR4302536.5213666/1‑94 (MQ=60)
                                                              GAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACC                                >  SRR4302536.4172568/1‑94 (MQ=60)
                                                              GAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACC                                >  SRR4302536.5863277/1‑94 (MQ=60)
                                                              GAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACC                                >  SRR4302536.5860851/1‑94 (MQ=60)
                                                                 CAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAA                             >  SRR4302536.1139965/1‑94 (MQ=60)
                                                                  acccggcactCCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAG                            <  SRR4302536.58874/84‑1 (MQ=60)
                                                                  AACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAG                            >  SRR4302536.575406/1‑94 (MQ=60)
                                                                  AACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAG                            <  SRR4302536.5506003/94‑1 (MQ=60)
                                                                  AACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAG                            <  SRR4302536.3279649/94‑1 (MQ=60)
                                                                   ACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGA                           >  SRR4302536.5959340/1‑94 (MQ=60)
                                                                   ACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGA                           <  SRR4302536.4189132/94‑1 (MQ=60)
                                                                   ACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGA                           <  SRR4302536.2681921/94‑1 (MQ=60)
                                                                   ACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGA                           <  SRR4302536.4189133/94‑1 (MQ=60)
                                                                   ACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGA                           <  SRR4302536.6067877/94‑1 (MQ=60)
                                                                   ACCGGTACACCCGACAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCCAACCAAAGA                           >  SRR4302536.1080198/1‑94 (MQ=60)
                                                                    CCGGTCCCCCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGAT                          <  SRR4302536.1774255/94‑1 (MQ=60)
                                                                     CGGTACCCCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATA                         <  SRR4302536.5413246/94‑1 (MQ=60)
                                                                      GGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGAGTTACGACCAAAGGGGGTTTTATTCAGCAGCAAACCAAAGATAA                        >  SRR4302536.640003/1‑94 (MQ=60)
                                                                       GTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAAT                       >  SRR4302536.45015/1‑94 (MQ=60)
                                                                       GTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAAT                       <  SRR4302536.6769779/94‑1 (MQ=60)
                                                                        TCCACCCGCCAGCCGCGCGTC‑CTCTGCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATC                      <  SRR4302536.3149357/94‑1 (MQ=60)
                                                                        TACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATC                      >  SRR4302536.1387904/1‑94 (MQ=60)
                                                                        GACACCCCCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATC                      <  SRR4302536.1999589/94‑1 (MQ=60)
                                                                         ACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCA                     >  SRR4302536.215538/1‑94 (MQ=60)
                                                                          CCCCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAG                    <  SRR4302536.528066/94‑1 (MQ=60)
                                                                          CACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAG                    <  SRR4302536.2464723/94‑1 (MQ=60)
                                                                           ACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGA                   <  SRR4302536.638497/94‑1 (MQ=60)
                                                                           ACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGA                   >  SRR4302536.4773169/1‑94 (MQ=60)
                                                                            CCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGAC                  <  SRR4302536.3185986/94‑1 (MQ=60)
                                                                             CCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACA                 >  SRR4302536.6734052/1‑94 (MQ=60)
                                                                             CCGCCAGACGCGCG‑GCCTCGTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACA                 <  SRR4302536.6408030/94‑1 (MQ=60)
                                                                              CGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACAC                <  SRR4302536.2061654/94‑1 (MQ=60)
                                                                              CGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGGTTTATTCAGCAGCAAACCAAAGATAATCAGACAG                >  SRR4302536.3027356/1‑94 (MQ=60)
                                                                              CGCCAGACGAGCG‑GCCTCTTTGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACAC                >  SRR4302536.6749092/1‑94 (MQ=60)
                                                                               GCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACG               >  SRR4302536.4855621/1‑94 (MQ=60)
                                                                               GCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACG               <  SRR4302536.3788693/94‑1 (MQ=60)
                                                                               CCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACG               <  SRR4302536.3098589/94‑1 (MQ=60)
                                                                                 CAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACGCG             <  SRR4302536.5175670/94‑1 (MQ=60)
                                                                                 CAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACGCG             >  SRR4302536.4428870/1‑94 (MQ=60)
                                                                                  AGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACGCGA            >  SRR4302536.3652410/1‑94 (MQ=60)
                                                                                   GACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACGCGAC           <  SRR4302536.6009137/94‑1 (MQ=60)
                                                                                   GACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACGCGAC           <  SRR4302536.2308547/94‑1 (MQ=60)
                                                                                      GCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACGCGACGGT        <  SRR4302536.5731446/94‑1 (MQ=60)
                                                                                      GCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACGCGACGGT        >  SRR4302536.5086524/1‑94 (MQ=60)
                                                                                       gcgcgccCTCTTCGTCCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGTTTTTATTCAGCAGCAAACCAAAGATAATCAGACACGCGACGGT        <  SRR4302536.1348293/87‑1 (MQ=60)
                                                                                       CGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACGCGACGGTG       >  SRR4302536.869581/1‑94 (MQ=60)
                                                                                        cgcgccCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACGCGACGGTG       <  SRR4302536.3951227/88‑1 (MQ=60)
                                                                                        GCG‑GCCTCTTCGTCCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACGCGACGGTGA      <  SRR4302536.4785023/94‑1 (MQ=60)
                                                                                         CG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACGCGACGGTGAG     <  SRR4302536.6168425/94‑1 (MQ=60)
                                                                                         CG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACGCGACGGTGAG     >  SRR4302536.3553807/1‑94 (MQ=60)
                                                                                          cgccCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACGCGACGGTGAG     <  SRR4302536.4122879/90‑1 (MQ=60)
                                                                                           ggcCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACGCGACGGTGAGC    >  SRR4302536.4682846/4‑94 (MQ=60)
                                                                                           ggcCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACGCGACGGTGAGC    >  SRR4302536.2041437/4‑94 (MQ=60)
                                                                                            C‑CTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACGCGACGGTGAGCCA  <  SRR4302536.5592687/94‑1 (MQ=60)
                                                                                            C‑CTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACGCGACGGTGAGCCA  >  SRR4302536.765513/1‑94 (MQ=60)
                                                                                              |                                                                                            
CAGAATAATTCCGGCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑G‑CTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACGCGACGGTGAGCCA  >  NC_000913/1980848‑1981032

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑