Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1475	266.7	13469680	98.2%	13227225	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,008,480	+A	coding (637/654 nt)	yedK →	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,008,476	1	.	A	99.1%	800.9 / ‑1.1	217	coding (633/654 nt)	yedK	hypothetical protein
Reads supporting (aligned to +/- strand): ref base . (0/2); new base A (88/127); total (88/129)
Fisher's exact test for biased strand distribution p-value = 5.16e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.93e-01

Only 100 of 240 total aligned reads displayed.

AGCGGTAAAGAAGCCTCAGAAATCGCGGCCAGTGGCTGTGTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGT‑T‑AAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGATCAACAATACTGCGTCATAAGAAATCTCTATTA  >  NC_000913/2008384‑2008563

aGCGGTAAAGAAGCCTCAGAAATCGCGGCCAGTGGCTGTGTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGt‑t                                                                                           <  2:2373595/93‑1 (MQ=255)

aGCGGTAAAGAAGCCTCAGAAATCGCGCCCAGTCGCTGTGTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGt‑t                                                                                           <  1:3725044/93‑1 (MQ=255)

     tAAAGAAGCCTCAGAAATCGCGGCCAGTGGCTGTGTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGT‑T‑aaaaa                                                                                     <  1:531552/93‑2 (MQ=255)

     tAAAGAAGCCTCAGAAATCGCGGCCAGTGGCTGTGTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGT‑T‑aaaaa                                                                                     <  1:3048519/93‑2 (MQ=255)

       aagaagCCTCAGAAATCGCGGCCAGTGGCTGTGTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGT‑T‑aaaaacc                                                                                   >  1:3646722/1‑90 (MQ=255)

       aagaagCCTCAGAAATCGCGGCCAGTGGCTGTGTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGT‑T‑aaaaacc                                                                                   >  1:3264005/1‑90 (MQ=255)

        agaagCCTCAGAAATCGCGGCCAGTGGCTGTGTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGT‑T‑aaaaacca                                                                                  <  2:4347051/93‑5 (MQ=255)

          aagCCTCAGAAATCGCGGCCAGTGGCTGTGTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGT‑TAAAAA‑CCAgg                                                                                <  2:2252806/93‑1 (MQ=255)

          aagCCTCAGAAATCGCGGCCAGTGGCTGTGTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGT‑TAAAAA‑CCAgg                                                                                <  1:3125566/93‑1 (MQ=255)

           agCCTCAGAAATCGCGGCCAGTGGCTGTGTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGT‑TAAAAA‑CCAggg                                                                               >  1:499864/1‑93 (MQ=255)

            gCCTCAGAAATCGCGGCCAGTGGCTGTGTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGT‑TAAAAA‑CCAGGgc                                                                              <  2:824399/93‑1 (MQ=255)

              cTCAGAAATCGCGGCCAGTGGCTGTGTTCCAGCAAACCAGTTCTCCTGGCGCCCGGTATCGCGCGCGGTGGGTAATGT‑TAAAAA‑CCAGGgcgc                                                                            <  1:1832615/93‑1 (MQ=255)

                cAGAAATCGCGGCCAGTGGCTGTGTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGT‑TAAAAA‑CCAGGGCGCgg                                                                          <  2:1923867/93‑1 (MQ=255)

                 aGAAATCGCGGCCAGTGGCTGTGTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGT‑TAAAAA‑CCAGGGCGCGGa                                                                         >  1:889427/1‑93 (MQ=255)

                 aGAAATCGCGGCCAGTGGCTGTGTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGT‑TAAAAA‑CCAGGGCGCGGa                                                                         <  2:773637/93‑1 (MQ=255)

                 aGAAATCGCGGCCAGTGGCTGTGTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGT‑TAAAAA‑CCAGGGCGCGGa                                                                         <  2:3139185/93‑1 (MQ=255)

                  gAAATCGCGGCCAGTGGCTGTGTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGT‑TAAAAA‑CCAGGGCGCGGAg                                                                        <  1:6460503/93‑1 (MQ=255)

                   aaaTCGCGGCCAGTGGCTGTGTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGT‑TAAAAA‑CCAGGGCGCGGAGt                                                                       <  2:4554308/93‑1 (MQ=255)

                   aaaTCGCGGCCAGTGGCTGTGTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGT‑TAAAAA‑CCAGGGCGCGGAGt                                                                       <  1:3905564/93‑1 (MQ=255)

                    aaTCGCGGCCAGTGGCTGTGTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGT‑TAAAAA‑CCAGGGCGCGGAGtt                                                                      >  1:725612/1‑93 (MQ=255)

                    aaTCGCGGCCAGTGGCTGTGCTCCAGCAAACCAGGTCTCCTGGCACCCGGCATCGCGCGCGGTGGGTGATGT‑TAAAAA‑CCAGGGCGCGGAggt                                                                      >  2:3021431/1‑91 (MQ=255)

                       cgcgGCCAGTGGCTGTGTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGT‑TAAAAA‑CCAGGGCGCGGAGTTAAt                                                                   <  2:2177335/93‑1 (MQ=255)

                        gcgGCCAGTGGCTGTGTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGT‑TAAAAA‑CCAGGGCGCGGAGGTAAtt                                                                  >  1:3714524/1‑93 (MQ=255)

                        ccgGCCAGTGGCTGTGTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGT‑TAAAAA‑CCAGGGCGCGGAGTTAAtt                                                                  <  1:2346939/92‑1 (MQ=255)

                         cgGCCAGTGGCTGTGTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGT‑TAAAAA‑CCAGGGCGCGGAGTTAATTc                                                                 <  2:3342734/93‑1 (MQ=255)

                          ggCCAGTGGCTGTGTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGT‑TAAAAA‑CCAGGGCGCGGAGTTAATTCa                                                                >  2:280192/1‑93 (MQ=255)

                          ggCCAGTGGCTGTGTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGT‑TAAAAA‑CCAGGGCGCGGAGTTAATTCa                                                                >  2:6629513/1‑93 (MQ=255)

                           gCCAGTGGCTGTGTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGT‑TAAAAA‑CCAGGGCGCGGAGTTAATTCaa                                                               >  2:1262352/1‑93 (MQ=255)

                              aGTGGCTGTGTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGT‑TAAAAA‑CCAGGGCGCGGAGTTAATTCAACCt                                                            >  1:6078345/1‑93 (MQ=255)

                              aGTGGCTGTGTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGT‑TAAAAA‑CCAGGGCGCGGAGTTAATTCAACCt                                                            <  2:4024559/93‑1 (MQ=255)

                               gTGGCTGTGTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGT‑TAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTg                                                           >  1:5137456/1‑93 (MQ=255)

                                 ggCTGTGTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGT‑TAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTggt                                                         >  2:5728515/1‑91 (MQ=255)

                                    tgtgTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGT‑TAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGa                                                      <  1:5729167/93‑1 (MQ=255)

                                    tgtgTTCCAGCAAACCAGTCCTCCTGGCACGCGGTATCGCGCGCGGTGGGTAATGT‑TAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTgt                                                      <  2:4268750/93‑2 (MQ=255)

                                    tgngTTCCAGCAAACCAGTTCTNCTGGCACCCGGTATCGCGCGCGGTGGGTAATGT‑TAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGa                                                      <  2:5193684/93‑1 (MQ=255)

                                     gtgtTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGT‑TAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGAt                                                     <  1:2441419/93‑1 (MQ=255)

                                     gtgtTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGT‑TAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGAt                                                     <  1:1443555/93‑1 (MQ=255)

                                      tgtTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGT‑TAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATa                                                    <  1:55942/93‑1 (MQ=255)

                                       tttCCAGCAAACCATTTCTCCCGGCCCCCGGTATCGCGCGCGGTGGGTAATGT‑TAAAAA‑CCAGGGCCCGGAGTTAATTCAACCTGTTTGATaa                                                   <  1:1359098/92‑1 (MQ=255)

                                       gtTCCAGAAAACCAGTTCTCCTGGCCCCCGGTATCGCGCGCGGTGGGTAATGT‑TAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATaa                                                   <  1:4961615/93‑1 (MQ=255)

                                        ttCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGT‑TAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAg                                                  <  2:6140667/93‑1 (MQ=255)

                                          ccAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGT‑TAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGcc                                                <  1:1105218/93‑1 (MQ=255)

                                          ccAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGT‑TAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGcc                                                <  1:809658/93‑1 (MQ=255)

                                          ccAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGT‑TAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGcc                                                <  2:3172090/93‑1 (MQ=255)

                                          ccAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGT‑TAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGcc                                                <  1:4286314/93‑1 (MQ=255)

                                           cAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGT‑TAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCt                                               <  2:258787/93‑1 (MQ=255)

                                            aGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGT‑TAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTg                                              >  1:6612633/1‑93 (MQ=255)

                                             gCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGT‑TAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTgg                                             <  1:6356898/93‑1 (MQ=255)

                                             gCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGT‑TAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTgg                                             <  2:1136901/93‑1 (MQ=255)

                                              cAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGT‑TAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGga                                            <  2:5524577/93‑1 (MQ=255)

                                               aaaCCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGT‑TAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGgag                                           <  1:1780537/93‑1 (MQ=255)

                                                aaCCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGT‑TAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGgaga                                          >  1:5944666/1‑93 (MQ=255)

                                                  ccAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGT‑TAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGatt                                        >  1:1536576/1‑93 (MQ=255)

                                                   cAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGT‑TAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGatta                                       >  2:1542919/1‑93 (MQ=255)

                                                    aGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGT‑TAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGattat                                      <  1:2403041/93‑1 (MQ=255)

                                                    aGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGT‑TAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGattat                                      >  1:1049444/1‑93 (MQ=255)

                                                     gTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGT‑TAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGattatt                                     >  1:2648385/1‑93 (MQ=255)

                                                     gTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGT‑TAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGattatt                                     >  1:674319/1‑93 (MQ=255)

                                                     gTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGT‑TAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGattatt                                     >  2:1298852/1‑93 (MQ=255)

                                                     gTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGT‑TAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGattatt                                     <  2:1861735/93‑1 (MQ=255)

                                                     gTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGT‑TAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGattatt                                     >  1:4529154/1‑93 (MQ=255)

                                                      ttCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGT‑TAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTg                                    >  1:3922588/1‑93 (MQ=255)

                                                      ttCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGT‑TAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTg                                    >  1:4377113/1‑93 (MQ=255)

                                                       tctcCTGGCACCCGGTATCGCGCGCGGTGGGTAATGT‑TAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGa                                   <  2:1680727/93‑1 (MQ=255)

                                                       tctcCTGGCACCCGGTATCGCGCGCGGTGGGTAATGT‑TAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGa                                   >  2:2470374/1‑93 (MQ=255)

                                                        ctcCTGGCACCCGGTATCGCGCGCGGTGGGTAATGT‑TAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGAt                                  <  2:1808981/93‑1 (MQ=255)

                                                        ctcCGGGCACCCGGTATCGCGCGCGGTGGGTAATGT‑TAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGAt                                  <  2:3912728/93‑1 (MQ=255)

                                                         tcCTGGCGCCCGGTATCGCGCGCGGTGGGTAATGT‑TAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGATc                                 <  1:3986222/93‑1 (MQ=255)

                                                         tcCTGGCACCCGGTATCGCGCGCGGTGGGTAATGT‑TAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGATc                                 <  1:6210121/93‑1 (MQ=255)

                                                         tcCTGGCACCCGGTATCGCGCGCGGTGGGTAATGT‑TAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCATGGAGATTATTCATc                                 >  1:4649164/1‑93 (MQ=255)

                                                          ccTGGCACCCGGTATCGCGCGCGGTGGGTAATGT‑TAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGATca                                <  2:6296056/93‑1 (MQ=255)

                                                            tGGCACCCGGTATCGCGCGCGGTGGGTAATGT‑TAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGGTTGATAAGCCTGGAGATTATTGATcaac                              >  2:6527387/1‑93 (MQ=255)

                                                             ggCACCCGGTATCGCGCGCGGTGGGTAATGT‑TAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGATcaaca                             >  2:5648469/1‑93 (MQ=255)

                                                              gcgcccGGTATCGCGCGCGGTGGGTAATGT‑TAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGATcaacaa                            <  2:4114140/90‑1 (MQ=255)

                                                              gCACCCGGTATCGCGCGCGGTGGGTAATCTGA‑AAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGATcaacaa                            <  1:2518513/93‑1 (MQ=255)

                                                               cACCCGGTATCGCGCGCGGTGGGTAATGT‑TAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGATCAACAAt                           <  2:5418268/93‑1 (MQ=255)

                                                                aCCCGGTATCGCGCGCGGTGGGTAATGT‑TAAAAA‑CCAGGGCGCGGAGATAATTCAACCTGTTTGATAAGCCTGGAGATTATTGATCAACAATa                          >  2:1655310/1‑93 (MQ=255)

                                                                 cccGGTATCGCGCGCGGTGGGTAATGT‑TAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGATCAACAATAc                         <  1:2795507/93‑1 (MQ=255)

                                                                   cGGTATCGCGCGCGGTGGGTAATGT‑TAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGATCAACAATACTg                       >  1:3479928/1‑93 (MQ=255)

                                                                   cGGTATCGCGCGCGGTGGGTAATGT‑TAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGATCAACAATACTg                       >  1:2189975/1‑93 (MQ=255)

                                                                   cGGTATCGCGCGCGGTGGGTAATGT‑T‑AAAACCCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGATCAACAATACTg                       <  2:4807232/93‑1 (MQ=255)

                                                                    ggTATCGCGCGCGGTGGGTAATGT‑TAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGATCAACAATACTGc                      <  2:3485927/93‑1 (MQ=255)

                                                                      tATCGCGCGCGGTGGGTAATGT‑TAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGATCAACAATACTGCgc                    >  2:5114208/1‑92 (MQ=255)

                                                                        tCGCGCGCGGTGGGTAATGT‑TAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGATCAACAATACTGCGTCa                  >  2:4085363/1‑93 (MQ=255)

                                                                        tCGCGCGCGGTGGGTAATGT‑TAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGATCAACAATACTGCGTCa                  >  2:4598357/1‑93 (MQ=255)

                                                                         cgcgcgcgGTGGGTAATGT‑TAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGATCAACAATACTGCGTCAt                 <  2:6049988/93‑1 (MQ=255)

                                                                           cgcgcgGTGGGTAATGT‑TAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGATCAACAATACTGCGTCATaa               <  1:2563631/93‑1 (MQ=255)

                                                                           cgcgcgGTGGGTAATGT‑TAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGATCAACAATACTGCGTCATaa               <  2:3767733/93‑1 (MQ=255)

                                                                             cgcgGTGGGTAATGT‑TAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGATCAACAATACTGCGTCATAAGa             >  1:762252/1‑93 (MQ=255)

                                                                               cgGTGGGTAATGT‑TAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGATCAACAATACTGCGTCATAAGaaa           <  1:1810592/93‑1 (MQ=255)

                                                                               cgGTGGGTAATGT‑TAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGATCAACAATACTGCGTCATAAGaaa           >  1:5287933/1‑93 (MQ=255)

                                                                                ggTGGGTAATGT‑TAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGATCAACAATACTGCGTCATAAGAAAt          >  1:2166529/1‑93 (MQ=255)

                                                                                   gggTAATGT‑TAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGATCAACAATACTGCGTCATAAGAAAtctc       <  1:6430055/93‑1 (MQ=255)

                                                                                   gggTAATGT‑TAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGATCAACAATACTGCGTCATAAGAAAtctc       <  1:42348/93‑1 (MQ=255)

                                                                                   gggTAATGT‑TAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGATCAACAATACTGCGTCATAAGAAAtctc       <  2:1066253/93‑1 (MQ=255)

                                                                                    ggTAATGT‑TAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGATCAACAATACTGCGTCATAAGAAATctct      <  1:285500/93‑1 (MQ=255)

                                                                                     gTAATGT‑TAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGATCAACAATACTGCGTCATAAGAAATCTCTa     >  2:4338761/1‑93 (MQ=255)

                                                                                       aaTGT‑TAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGATCAACAATACTGCGTCATAAGAAATCTCTAtt   >  2:5406547/1‑93 (MQ=255)

                                                                                        aTGT‑TAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGATCAACAATACTGCGTCATAAGAAATCTCTATTa  >  2:2839988/1‑93 (MQ=255)

                                                                                        aTGT‑TAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGATCAACAATACTGCGTCATAAGAAATCTCTATTa  <  1:6141386/93‑1 (MQ=255)

AGCGGTAAAGAAGCCTCAGAAATCGCGGCCAGTGGCTGTGTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGT‑T‑AAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGATCAACAATACTGCGTCATAAGAAATCTCTATTA  >  NC_000913/2008384‑2008563

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 19 ≤` `ATCG/ATCG` `< 28 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

GTAAAGAAGCCTCAGAAATCGCGGCCAGTGGCTGTGTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGT‑T‑AAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGATCAACAATACTGCGTCATAAGAAATCTCTATTAGACAAAGAT  >  NC_000913/2008388‑2008572

GTAAAGAAGCCTCAGAAATCGCGGCCAGTGGCTGTGTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGT‑T‑AAAA‑A                                                                                             >  SRR4302536.5009598/1‑94 (MQ=60)

 TAAAGAAGCCTCAGAAATCGCGGCCAGTGGCTGTGTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGT‑T‑AAAA‑AC                                                                                            <  SRR4302536.545146/94‑1 (MQ=60)

 TAAAGAAGCCTCAGAAATCGCGGCCAGTGGCTGTGTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGT‑T‑AAAA‑AC                                                                                            <  SRR4302536.3138071/94‑1 (MQ=60)

 TAAAGAAGCCTCAGAAATCGCGGCCAGTGGCTGTGTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGT‑T‑AAAA‑AC                                                                                            >  SRR4302536.22774/1‑94 (MQ=60)

  AAAGAAGCCTCAGAAATCGCGGCCAGTGGCTGTGTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGT‑T‑AAAAacc                                                                                            >  SRR4302536.3755748/1‑91 (MQ=60)

  AAAGAAGCCTCAGAAATCGCGGCCAGTGGCTGTGTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGT‑T‑AAAAacc                                                                                            <  SRR4302536.6004786/94‑4 (MQ=60)

  AAAGAAGCCTCAGAAATCGCGGCCAGTGGCTGTGTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGT‑T‑AAAAacc                                                                                            >  SRR4302536.3359781/1‑91 (MQ=60)

   AAGAAGCCTCAGAAATCGCGGCCAGTGGCTGTGTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGT‑TAAAAA‑CCA                                                                                           >  SRR4302536.1539994/1‑94 (MQ=60)

    AGAAGCCTCAGAAATCGCGGCCAGTGGCTGTGTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGT‑TAAAAA‑CCAG                                                                                          <  SRR4302536.3440161/94‑1 (MQ=60)

     GAAGCCTCAGAAATCGCGGCCAGTGGCTGTGTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGT‑TAAAAA‑CCAGG                                                                                         <  SRR4302536.5809766/94‑1 (MQ=60)

     GAAGCCTCAGAAATCGCGGCCAGTGGCTGTGTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGT‑TAAAAA‑CCAGG                                                                                         <  SRR4302536.1407201/94‑1 (MQ=60)

      AAGCCTCAGAAATCGCGGCCAGTGGCTGTGTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGT‑TAAAAA‑CCAGGG                                                                                        >  SRR4302536.6759911/1‑94 (MQ=60)

      AAGCCTCAGAAATCGCGGCCAGTGGCTGTGTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGT‑TAAAAA‑CCAGGG                                                                                        <  SRR4302536.3216903/94‑1 (MQ=60)

      AAGCCTCAGAAATCGCGGCCAGTGGCTGTGTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGT‑TAAAAA‑CCAGGG                                                                                        >  SRR4302536.6391043/1‑94 (MQ=60)

      AAGCCTCAGAAATCGCGGCCAGTGGCTGTGTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGT‑TAAAAA‑CCAGGG                                                                                        >  SRR4302536.512754/1‑94 (MQ=60)

       AGCCTCAGAAATCGCGGCCAGTGGCTGTGTTCCAGCAAACCAGTTCTCCTGGCCCCCGGTATCGCGCGCGGTGGGTAATGT‑TAAAAA‑CCAGGGC                                                                                       <  SRR4302536.6530016/94‑1 (MQ=60)

       AGCCTCAGAAATCGCGGCCAGTGGCTGTGTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGT‑TAAAAA‑CCAGGGC                                                                                       >  SRR4302536.511878/1‑94 (MQ=60)

         CCTCAGAAATCGCGGCCAGTGGCTGTGTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGT‑TAAAAA‑CCAGGGCGC                                                                                     >  SRR4302536.2354924/1‑94 (MQ=60)

          CTCAGAAATCGCGGCCAGTGGCTGTGTTCCAGCAAACCAGTTCTCCTGGCGCCCGGTATCGCGCGCGGTGGGTAATGT‑TAAAAA‑CCAGGGCGCG                                                                                    <  SRR4302536.1887863/94‑1 (MQ=60)

          CTCAGAAATCGCGGCCAGTGGCTGTGTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGT‑TAAAAA‑CCAGGGCGCG                                                                                    <  SRR4302536.2644690/94‑1 (MQ=60)

          CTCAGAAATCGCGGCCAGTGGCTGTGTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCACGGTGGGTAATGT‑TAAAAA‑ACAGGGCGCG                                                                                    >  SRR4302536.29382/1‑94 (MQ=60)

            CAGAAATCGCGGCCAGTGGCTGTGTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGT‑TAAAAA‑CCAGGGCGCGGA                                                                                  >  SRR4302536.915622/1‑94 (MQ=60)

            CAGAAATCGCGGCCAGTGGCTGTGTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGT‑TAAAAA‑CCAGGGCGCGGA                                                                                  >  SRR4302536.5263908/1‑94 (MQ=60)

             AGAAATCGCGGCCAGTGGCTGTGTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGT‑TAAAAA‑CCAGGGCGCGGAG                                                                                 <  SRR4302536.1655648/94‑1 (MQ=60)

              GAAATCGCGGCCAGTGGCTGTGTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGT‑TAAAAA‑CCAGGGCGCGGAGT                                                                                <  SRR4302536.6653378/94‑1 (MQ=60)

               AAATCGCGGCCAGTGGCTGTGTTCCAGCAACCCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGT‑TAAAAA‑CCAGGGCGCGGAGTT                                                                               <  SRR4302536.779135/94‑1 (MQ=60)

               AAATCGCGGCCAGTGGCTGTGTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGT‑TAAAAA‑CCAGGGCGCGGAGTT                                                                               >  SRR4302536.746851/1‑94 (MQ=60)

               AAATCGCGGCCAGTGGCTGTGTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGT‑TAAAAA‑CCAGGGCGCGGAGTT                                                                               <  SRR4302536.4021645/94‑1 (MQ=60)

               AAATCGCGGCCAGTGGCTGTGTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGT‑TAAAAA‑CCAGGGCGCGGAGTT                                                                               >  SRR4302536.2602742/1‑94 (MQ=60)

                AATCGCGGCCAGTGGCTGTGTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGT‑TAAAAA‑CCAGGGCGCGGAGTTA                                                                              <  SRR4302536.3645186/94‑1 (MQ=60)

                AATCGCGGCCAGTGGCTGTGTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGT‑TAAAAA‑CCAGGGCGCGGAGTTA                                                                              <  SRR4302536.409151/94‑1 (MQ=60)

                 ATCGCGGCCAGTGGCTGTGTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGT‑TAAAAA‑CCAGGGCGCGGAGTTAA                                                                             <  SRR4302536.5866529/94‑1 (MQ=60)

                 ATCGCGGCCAGTGGCTGTGTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGT‑TAAAAA‑CCAGGGCGCGGAGTTAA                                                                             <  SRR4302536.291189/94‑1 (MQ=60)

                  TCGCGGCCAGTGGCTGTGTTCCAGCAAAGCAATTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGT‑TAAAAA‑CCAGGGCGCGGAGTTAAT                                                                            <  SRR4302536.5547345/94‑1 (MQ=60)

                   CGCGGCCAGTGGCTGTGTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGT‑TAAAAA‑CCAGGGCGCGGAGGTAATT                                                                           >  SRR4302536.3825569/1‑94 (MQ=60)

                    CCGGCCAGTGGCTGTGTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGT‑TAAAAA‑CCAGGGCGCGGAGTTAATTC                                                                          <  SRR4302536.2418100/94‑1 (MQ=60)

                     CGGCCAGTGGCTGTGTTCCAGCAAACCAGTTCTCCTGGCACCCGGGATCGCGCTCGGTGGGTAGTGT‑TAAAAA‑CCAGGGCGCGGAGTTAATTCA                                                                         >  SRR4302536.965087/1‑94 (MQ=60)

                      GGCCAGTGGCTGTGTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGT‑TAAAAA‑CCAGGGCGCGGAGTTAATTCAA                                                                        >  SRR4302536.2723984/1‑94 (MQ=60)

                        CCAGTGGCTGTGTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGT‑TAAAAA‑CCAGGGCGCGGAGTTAATTCAACC                                                                      <  SRR4302536.2495935/94‑1 (MQ=60)

                        CCAGTGGCTGTGTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGT‑TAAAAA‑CCAGGGCGCGGAGTTAATTCAACC                                                                      <  SRR4302536.4428030/94‑1 (MQ=60)

                         CAGTGGCTGTGTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGT‑TAAAAA‑CCAGGGCGCGGAGTTAATTCAACCT                                                                     >  SRR4302536.6259651/1‑94 (MQ=60)

                          AGTGGCTGTGTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGT‑TAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTG                                                                    >  SRR4302536.3329952/1‑94 (MQ=60)

                          AGTGGCTGTGTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGT‑TAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTG                                                                    >  SRR4302536.6635578/1‑94 (MQ=60)

                          AGTGGCTGTGTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGT‑TAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTG                                                                    >  SRR4302536.5290827/1‑94 (MQ=60)

                           GTGGCTGTGTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGT‑TAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGT                                                                   <  SRR4302536.1422642/94‑1 (MQ=60)

                            TGGCTGTGTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGT‑TAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTT                                                                  <  SRR4302536.2219479/94‑1 (MQ=60)

                            TGGCTGTGTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGT‑TAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTT                                                                  <  SRR4302536.1993932/94‑1 (MQ=60)

                             GGCTGTGTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGT‑TAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTT                                                                 <  SRR4302536.1236867/94‑1 (MQ=60)

                                TGTGTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGT‑TAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGAT                                                              <  SRR4302536.5899567/94‑1 (MQ=60)

                                 GTGTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGT‑TAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATA                                                             <  SRR4302536.1486350/94‑1 (MQ=60)

                                 GTGTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGT‑TAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATA                                                             <  SRR4302536.2515196/94‑1 (MQ=60)

                                  TGTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGT‑TAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAA                                                            <  SRR4302536.57505/94‑1 (MQ=60)

                                   TTTCCAGCAAACCATTTCTCCCGGCCCCCGGTATCGCGCGCGGTGGGTAATGT‑TAAAAA‑CCAGGGCCCGGAGTTAATTCAACCTGTTTGATAAG                                                           <  SRR4302536.1399604/94‑1 (MQ=60)

                                   GTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGT‑TAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAG                                                           <  SRR4302536.798064/94‑1 (MQ=60)

                                   GTTCCAGAAAACCAGTTCTCCTGGCCCCCGGTATCGCGCGCGGTGGGTAATGT‑TAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAG                                                           <  SRR4302536.5110671/94‑1 (MQ=60)

                                      CCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGT‑TAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCT                                                        <  SRR4302536.4414344/94‑1 (MQ=60)

                                      CCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGT‑TAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCT                                                        <  SRR4302536.1138384/94‑1 (MQ=60)

                                      CCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGT‑TAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCT                                                        <  SRR4302536.833398/94‑1 (MQ=60)

                                       CAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGT‑TAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTG                                                       >  SRR4302536.1419496/1‑94 (MQ=60)

                                       CAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGT‑TAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTG                                                       >  SRR4302536.6809257/1‑94 (MQ=60)

                                        AGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGT‑TAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGG                                                      >  SRR4302536.3779714/1‑94 (MQ=60)

                                         GCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGT‑TAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGA                                                     <  SRR4302536.6546279/94‑1 (MQ=60)

                                         GCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGT‑TAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGA                                                     <  SRR4302536.5446728/94‑1 (MQ=60)

                                          CAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGT‑TAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAG                                                    <  SRR4302536.2251535/94‑1 (MQ=60)

                                           AAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGT‑TAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGA                                                   >  SRR4302536.1881997/1‑94 (MQ=60)

                                           AAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGT‑TAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGA                                                   >  SRR4302536.6121774/1‑94 (MQ=60)

                                           AAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGT‑TAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGA                                                   >  SRR4302536.6930363/1‑94 (MQ=60)

                                           AAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGT‑TAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGA                                                   <  SRR4302536.1834366/94‑1 (MQ=60)

                                            AACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGT‑TAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGAT                                                  <  SRR4302536.1292124/94‑1 (MQ=60)

                                             ACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGT‑TAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATT                                                 >  SRR4302536.1581774/1‑94 (MQ=60)

                                             ACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGT‑T‑AAAACCCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATT                                                 <  SRR4302536.3840875/94‑1 (MQ=60)

                                              CCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGT‑TAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTA                                                >  SRR4302536.1085114/1‑94 (MQ=60)

                                               CAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGT‑TAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTAT                                               <  SRR4302536.42204/94‑1 (MQ=60)

                                               CAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGT‑TAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTAT                                               >  SRR4302536.1080739/1‑94 (MQ=60)

                                                AGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGT‑TAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATT                                              >  SRR4302536.2727727/1‑94 (MQ=60)

                                                AGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGT‑TAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATT                                              <  SRR4302536.2475756/94‑1 (MQ=60)

                                                AGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGT‑TAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATT                                              >  SRR4302536.694055/1‑94 (MQ=60)

                                                AGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGT‑TAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATT                                              >  SRR4302536.4664934/1‑94 (MQ=60)

                                                 GTTCTCCTGGCGCCCGGTATCGCGCGCGGTGGGTAATGT‑TAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTG                                             <  SRR4302536.2841694/94‑1 (MQ=60)

                                                 GTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGT‑TAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTG                                             >  SRR4302536.4039156/1‑94 (MQ=60)

                                                 GTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGT‑TAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTG                                             <  SRR4302536.1582097/94‑1 (MQ=60)

                                                 GTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGT‑TAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTG                                             >  SRR4302536.4507820/1‑94 (MQ=60)

                                                  TTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGT‑TAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGA                                            <  SRR4302536.988922/94‑1 (MQ=60)

                                                   TCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGT‑TAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGAT                                           <  SRR4302536.2525722/94‑1 (MQ=60)

                                                   TCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGT‑TAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGAT                                           >  SRR4302536.5392613/1‑94 (MQ=60)

                                                    CTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGT‑TAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCATGGAGATTATTCATC                                          >  SRR4302536.4788945/1‑94 (MQ=60)

                                                     TCCTGGCGCCCGGTATCGCGCGCGGTGGGTAATGT‑TAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGATCA                                         <  SRR4302536.4104545/94‑1 (MQ=60)

                                                     TCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGT‑TAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGATCA                                         <  SRR4302536.74341/94‑1 (MQ=60)

                                                     TCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGT‑TAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGATCA                                         <  SRR4302536.6395135/94‑1 (MQ=60)

                                                      CCTGGCACCCGGTATCGCGCGCGGTGGGTAATGT‑TAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGATCAA                                        <  SRR4302536.4675176/94‑1 (MQ=60)

                                                      CCTGGCACCCGGTATCGCGCGCGGTGGGTAATGT‑TAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGATCAA                                        <  SRR4302536.2580473/94‑1 (MQ=60)

                                                      CCTGGCACCCGGTATCGCGCGCGGTGGGTAATGT‑TAAAAA‑CCAGGGCGCGGAGCTAATTCAACCTGCTTGATAAGCCTGGAGAGTATTGATCAA                                        >  SRR4302536.3420729/1‑94 (MQ=60)

                                                       CTGGCACCCGGTATCGCGCGCGGTGGGTAATGT‑TAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGATCAAC                                       <  SRR4302536.6378167/94‑1 (MQ=60)

                                                       CTGGCACCCGGTATCGCGCGCGGTGGGTAATGT‑TAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGATCAAC                                       <  SRR4302536.547445/94‑1 (MQ=60)

                                                          GCACCCGGTATCGCGCGCGGTGGGTAATGT‑TAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGATGAACAAT                                    >  SRR4302536.3921291/1‑94 (MQ=60)

                                                          GCACCCGGTATCGCGCGCGGTGGGTAATGT‑TAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGATCAACAAT                                    <  SRR4302536.6617196/94‑1 (MQ=60)

                                                          GCACCCGGTATCGCGCGCGGTGGGTAATCTGA‑AAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGATCAACAAT                                    <  SRR4302536.2594449/94‑1 (MQ=60)

                                                           CACCCGGTATCGCGCGCGGTGGGTAATGT‑TAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGATCAACAATA                                   <  SRR4302536.4655773/94‑1 (MQ=60)

                                                            CCCCGGTATCGCGCGCGGTGGGTAATGT‑TAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGATCAACAATAC                                  <  SRR4302536.381395/94‑1 (MQ=60)

                                                            ACCCGGTATCGCGCGCGGTGGGTAATGT‑TAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGATCAACAATAC                                  <  SRR4302536.3759084/94‑1 (MQ=60)

                                                             CCCGGTATCGCGCGCGGTGGGTAATGT‑TAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGATCAACAATACT                                 <  SRR4302536.2878451/94‑1 (MQ=60)

                                                              CCGGTATCGCGCGCGGTGGGTAATGT‑TAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGATCAACAATACTG                                >  SRR4302536.2256025/1‑94 (MQ=60)

                                                              CCGGTATCGCGCGCGGTGGGTAATGT‑TAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGATCAACAATACTG                                >  SRR4302536.3583672/1‑94 (MQ=60)

                                                              CCGGTATCGCGCGCGGTGGGTAATGT‑TAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGATCAACAATACTG                                <  SRR4302536.1859245/94‑1 (MQ=60)

                                                              CCGGTATCGCGCGCGGTGGGTAATGT‑TAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGATCAACAATACTG                                >  SRR4302536.3174161/1‑94 (MQ=60)

                                                               CGGTATCGCGCGCGGTGGGTAATGT‑TAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGATCAACAATACTGC                               >  SRR4302536.912372/1‑94 (MQ=60)

                                                                GGTATCGCGCGCGGTGGGTAATGT‑TAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGATCAACAATACTGCG                              >  SRR4302536.4432145/1‑94 (MQ=60)

                                                                  TATCGCGCGCGGTGGGTAATGT‑TAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGATCAACAATACTGCGTC                            >  SRR4302536.3309187/1‑94 (MQ=60)

                                                                   ATCGCGCGCGGTGGGTAATGT‑TAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGATCAACAATACTGCGTCA                           >  SRR4302536.6914861/1‑94 (MQ=60)

                                                                   ATCGCGCGCGGTGGGTAATGT‑TAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGATCAACAATACTGCGTCA                           <  SRR4302536.244976/94‑1 (MQ=60)

                                                                      GCGCGCGGTGGGTAATGT‑TAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGATCAACAATACTGCGTCATAA                        <  SRR4302536.614112/94‑1 (MQ=60)

                                                                      GCGCGCGGTGGGTAATGT‑TAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGATCAACAATACTGCGTCATAA                        <  SRR4302536.6568193/94‑1 (MQ=60)

                                                                       CGCGCGGTGGGTAATGT‑TAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGATCAACAATACTGCGTCATAAG                       <  SRR4302536.2640778/94‑1 (MQ=60)

                                                                        GCGCGGTGGGTAATGT‑TAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGATCAACAATACTGCGTCATAAGA                      >  SRR4302536.784603/1‑94 (MQ=60)

                                                                          GCGGTGGGTAATGT‑TAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGATCAACAATACTGCGTCATAAGAAA                    >  SRR4302536.5445586/1‑94 (MQ=60)

                                                                           CGGTGGGTAATGT‑TAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGATCAACAATACTGCGTCATAAGAAAT                   <  SRR4302536.1865229/94‑1 (MQ=60)

                                                                           CGGTGGGTAATGT‑TAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGATCAACAATACTGCGTCATAAGAAAT                   >  SRR4302536.2231716/1‑94 (MQ=60)

                                                                           CGGTGGGTAATGT‑TAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGATCAACAATACTGCGTCATAAGAAAT                   >  SRR4302536.5961894/1‑94 (MQ=60)

                                                                            GGTGGGTAATGT‑TAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGATCAACAATACTGCGTCATAAGAAATC                  >  SRR4302536.4164673/1‑94 (MQ=60)

                                                                             GTGGGTAATGT‑TAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGATCAACAATACTGCGTCATAAGAAATCT                 <  SRR4302536.5208569/94‑1 (MQ=60)

                                                                              TGGGTAATGT‑TAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGATCAACAATACTGCGTCATAAGAAATCTC                <  SRR4302536.4402514/94‑1 (MQ=60)

                                                                               GGGTAATGT‑TAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGATCAACAATACTGCGTCATAAGAAATCTCT               <  SRR4302536.6622239/94‑1 (MQ=60)

                                                                               GGGTAATGT‑TAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGATCAACAATACTGCGTCATAAGAAATCTCT               <  SRR4302536.6303063/94‑1 (MQ=60)

                                                                               GGGTAATGT‑TAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGATCAACAATACTGCGTCATAAGAAATCTCT               <  SRR4302536.43521/94‑1 (MQ=60)

                                                                               GGGTAATGT‑TAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGATCAACAATACTGCGTCATAAGAAATCTCT               >  SRR4302536.750861/1‑94 (MQ=60)

                                                                                GGTAATGT‑TAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGATCAACAATACTGCGTCATAAGAAATCTCTA              <  SRR4302536.293093/94‑1 (MQ=60)

                                                                                 GTAATGT‑TAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGATCAACAATACTGCGTCATAAGAAATCTCTAT             >  SRR4302536.5039884/1‑94 (MQ=60)

                                                                                  TAATGT‑T‑AAAACCCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGATCAACAATACTGCGTCATAAGAAATCTCTATT            <  SRR4302536.2988997/94‑1 (MQ=60)

                                                                                   AATGT‑TAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGATCAACAATACTGCGTCATAAGAAATCTCTATTA           <  SRR4302536.4038637/94‑1 (MQ=60)

                                                                                    ATGT‑TAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGATCAACAATACTGCGTCATAAGAAATCTCTATTAG          <  SRR4302536.6324400/94‑1 (MQ=60)

                                                                                     TGT‑TAAAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGATCAACAATACTGCGTCATAAGAAATCTCTATTAGA         >  SRR4302536.1771580/1‑94 (MQ=60)

                                                                                       T‑A‑AAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGATCAACAATACTGCGTCATAAGAAATCTCTATTAGACAA      >  SRR4302536.3964213/1‑94 (MQ=60)

                                                                                       T‑A‑AAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGATCAACAATACTGCGTCATAAGAAATCTCTATTAGACAA      <  SRR4302536.1105262/94‑1 (MQ=60)

                                                                                         A‑AAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGATCAACAATACTGCGTCATAAGAAATCTCTATTAGACAAA     >  SRR4302536.6813233/1‑94 (MQ=60)

                                                                                           AAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGATCAACAATACTGCGTCATAAGAAATCTCTATTAGACAAAG    >  SRR4302536.3138058/1‑94 (MQ=60)

                                                                                            AAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGATCAACAATACTGCGTCATAAGAAATCTCTATTAGACAAAGA   >  SRR4302536.1670029/1‑94 (MQ=60)

                                                                                             AA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGATCAACAATACTGCGTCATAAGAAATCTCTATTAGACAAAGAT  <  SRR4302536.6360055/94‑1 (MQ=60)

GTAAAGAAGCCTCAGAAATCGCGGCCAGTGGCTGTGTTCCAGCAAACCAGTTCTCCTGGCACCCGGTATCGCGCGCGGTGGGTAATGT‑T‑AAAA‑CCAGGGCGCGGAGTTAATTCAACCTGTTTGATAAGCCTGGAGATTATTGATCAACAATACTGCGTCATAAGAAATCTCTATTAGACAAAGAT  >  NC_000913/2008388‑2008572

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 7 ≤` `ATCG/ATCG` `< 26 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`