Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 1475 266.7 13469680 98.2% 13227225 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,109,166 A→G V278A (GTC→GCC)  rfbD ← dTDP‑6‑deoxy‑L‑mannose‑dehydrogenase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,109,1660AG100.0% 810.8 / NA 247V278A (GTC→GCC) rfbDdTDP‑6‑deoxy‑L‑mannose‑dehydrogenase
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (122/125);  total (122/125)

Only 100 of 260 total aligned reads displayed.

CACGAACAAGATGCAAAAACTATTAAATTGCTGTAGTCGTAAATAATTCATTGAGCATTCGTTTCACGCCAACCTGCCAGTCAGGCAAGACAAGCGCAAAGTTCTGCTGAAATTTTTCTGTATTAAGGCGAGAGTTATGTGGACGACGAGCTGGTGTAGGATAGGCTGTTGTTGGTACT  >  NC_000913/2109077‑2109255
                                                                                         |                                                                                         
cACGAACAAGATGCAAAAACTATTAAATTGCTGTAGTCGTAAATAATTCATTGAGCATTCGTTTCACGCCAACCTGCCAGTCAggcaaggcaa                                                                                        <  1:2930856/93‑1 (MQ=255)
 aCGAACAAGATGCAAAAACTATTAAATTGCTGTAGTCGTAAATAATTCATTGAGCATTCGTTTCACGCCAACCTGCCAGTCAGgcaaggcaag                                                                                       >  1:4659523/1‑93 (MQ=255)
 aCGAACAAGATGCAAAAACTATTAAATTGCTGTAGTCGTAAATAATTCATTGAGCATTCGTTTCACGCCAACCTGCCAGTCAGgcaaggcaag                                                                                       <  1:696/93‑1 (MQ=255)
  cGAACAAGATGCAAAAACTATTAAATTGCTGTAGTCGTAAATAATTCATTGAGCATTCGTTTCACGCCAACCTGCCAGTCAGGCAAGGCAAgc                                                                                      <  1:4853191/93‑1 (MQ=255)
  cGAACAAGATGCAAAAACTATTAAATTGCTGTAGTCGTAAATAATTCATTGAGCATTCGTTTCACGCCAACCTGCCAGTCAGGCAAGGCAAgc                                                                                      <  2:3401464/93‑1 (MQ=255)
  cGAACAAGATGCAAAAACTATTAAATTGCTGTAGTCGTAAATAATTCATTGAGCATTCGTTTCACGCCAACCTGCCAGTCAGGCAAGGCAAgc                                                                                      <  2:2752209/93‑1 (MQ=255)
  cGAACAAGATGCAAAAACTATTAAATTGCTGTAGTCGTAAATAATTCATTGAGCATTCGTTTCACGCCAACCTGCCAGTCAGGCAAGGCAAgc                                                                                      <  2:2548120/93‑1 (MQ=255)
    aaCAAGATGCAAAAACTATTAAATTGCTGTAGTCGTAAATAATTCATTGAGCATTCGTTTCACGCCAACCTGCCAGTCAGGCAAGGCAAgcgc                                                                                    >  1:1671018/1‑93 (MQ=255)
        aGATGCAAAAACTATTAAATTGCTGTAGTCGTAAATAATTCATTGAGCATTCGTTTCACGCCAACCTGCCAGTCAGGCAAGGCAAGCGCAAAg                                                                                >  1:6269286/1‑93 (MQ=255)
         gATGCAAAAACTATTAAATTGCTGTAGTCGTAAATAATTCATTGAGCATTCGTTTCACGCCAACCTGCCAGTCAGGCAAGGCAAGCGCAAAGt                                                                               >  2:1828791/1‑93 (MQ=255)
          aTGCAAAAACTATTAAATTGCTGTAGTCGTAAATAATTCATTGAGCATTCGTTTCACGCCAACCTGCCAGTCAGGCAAGGCAAGCGCAAAGtt                                                                              >  1:2530005/1‑93 (MQ=255)
           tGCAAAAACTATTAAATTGCTGTAGTCGTAAATAATTCATTGAGCATTCGTTTCACGCCAACCTGCCAGTCAGGCAAGGCAAGCGCAAAGTTc                                                                             >  2:318439/1‑93 (MQ=255)
           tGCAAAAACTATTAAATTGCTGTAGTCGTAAATAATTCATTGAGCATTCGTTTCACGCCAACCTGCCAGTCAGGCAAGGCAAGCGCAAAGTTc                                                                             >  1:5025886/1‑93 (MQ=255)
              aaaaaCTATTAAATTGCTGTAGTCGTAAATAATTCATTGAGCATTCGTTTCACGCCAACCTGCCAGTCAGGCAAGGCAAGCGCAAAGTTctgc                                                                          <  1:2641986/93‑1 (MQ=255)
              aaaaaCTATTAAATTGCTGTAGTCGTAAATAATTCATTGAGCATTCGTTTCACGCCAACCTGCCAGTCAGGCAAGGCAAGCGCAAAGTTctgc                                                                          >  1:53550/1‑93 (MQ=255)
               aaaaCTATTAAATTGCTGTAGTCGTAAATAATTCATTGAGCATTCGTTTCACGCCAACCTGCCAGTCAGGCAAGGCAAGCGCAAAGTTctgct                                                                         >  1:2028138/1‑93 (MQ=255)
               aaaaCTATTAAATTGCTGTAGTCGTAAATAATTCATTGAGCATTCGTTTCACGCCAACCTGCCAGTCAGGCAAGGCAAGCGCAAAGTTctgct                                                                         >  2:3121870/1‑93 (MQ=255)
               aaaaCTATTAAATTGCTGTAGTCGTAAATAATTCATTGAGCATTCGTTTCACGCCAACCTGCCAGTCAGGCAAGGCAAGCGCAAAGTTctgct                                                                         >  2:3538039/1‑93 (MQ=255)
               aaaaCTATTAAATTGCTGTAGTCGTAAATAATTCATTGAGCATTCGTTTCACGCCAACCTGCCAGTCAGGCAAGGCAAGCGCAAAGTTctgct                                                                         >  1:1033548/1‑93 (MQ=255)
                aaaCTATTAAATTGCTGTAGTCGTAAATAATTCATTGAGCATTCGTTTCACGCCAACCTGCCAGTCAGGCAAGGCAAGCGCAAAGTTctgctg                                                                        >  1:2856070/1‑93 (MQ=255)
                aaaCTATTAAATTGCTGTAGTCGTAAATAATTCATTGAGCATTCGTTTCACGCCAACCTGCCAGTCAGGCAAGGCAAGCGCAAAGTTctgctg                                                                        >  1:4001229/1‑93 (MQ=255)
                aaaCTATTAAATTGCTGTAGTCGTAAATAATTCATTGAGCATTCGTTTCACGCCAACCTGCCAGTCAGGCAAGGCAAGCGCAAAGTTctgctg                                                                        >  1:3737251/1‑93 (MQ=255)
                 aaCTATTAAATTGCTGTAGTCGTAAATAATTCATTGAGCATTCGTTTCACGCCAACCTGCCAGTCAGGCAAGGCAAGCGCAAAGTTCTGCTGa                                                                       >  2:4581435/1‑93 (MQ=255)
                   cTATTAAATTGCTGTAGTCGTAAATAATTCATTGAGCATTCGTTTCACGCCAACCTGCCAGTCAGGCAAGGCAAGCGCAAAGTTCTGCTGaaa                                                                     <  1:3564799/93‑1 (MQ=255)
                   cTATTAAATTGCTGTAGTCGTAAATAATTCATTGAGCATTCGTTTCACGCAAACCTGCCAGTCAGGCAAGGCAAGCGCAAAGTTCTGCTGaaa                                                                     <  2:4239724/93‑1 (MQ=255)
                    tATTAAATTGCTGTAGTCGTAAATAATTCATTGAGCATTCGTTTCACGCCAACCTGCCAGTCAGGCAAGGCAAGCGCAAAGTTCTGCTGAAAt                                                                    >  2:3771085/1‑93 (MQ=255)
                    tATTAAATTGCTGTAGTCGTAAATAATTCATTGAGCATTCGTTTCACGCCAACCTGCCAGTCAGGCAAGGCAAGCGCAAAGTTCTGCTGAAAt                                                                    >  1:5682036/1‑93 (MQ=255)
                     aTTAAATTGCTGTAGTCGTAAATAATTCATTGAGCATTCGTTTCACGCCAACCTGCCAGTCAGGCAAGGCAAGCGCAAAGTTCTGCTGAAAtt                                                                   <  1:5453256/93‑1 (MQ=255)
                       tAAATTGCTGTAGTCGTAAATAATTCATTGAGCATTCGTTTCACGCCAACCTGCCAGTCAGGCAAGGCAAGCGCAAAGTTCTGCTGAAAtttt                                                                 <  1:1493395/93‑1 (MQ=255)
                       tAAATTGCTGTAGTCGTAAATAATTCATTGAGCATTCGTTTCACGCCAACCTGCCAGTCAGGCAAGGCAAGCGCAAAGTTCTGCTGAAAtttt                                                                 >  2:1410523/1‑93 (MQ=255)
                         aaTTGCTGTAGTCGTAAATAATTCATTGAGCATTCGTTTCACGCCAACCTGCCAGTCAGGCAAGGCAAGCGCAAAGTTCTGCTGAAATTTTTc                                                               >  2:2456809/1‑93 (MQ=255)
                          aTTGCTGTAGTCGTAAATAATTCATTGAGCATTCGTTTCACGCCAACCTGCCAGTCAGGCAAGGCAAGCGCAAAGTTCTGCTGAAATTTTTCt                                                              >  1:2670502/1‑93 (MQ=255)
                          aTTGCTGTAGTCGTAAATAATTCATTGAGCATTCGTTTCACGCCAACCTGCCAGTCAGGCAAGGCAAGCGCAAAGTTCTGCTGAAATTTTTCt                                                              <  2:5864010/93‑1 (MQ=255)
                           ttGCTGTAGTCGTAAATAATTCATTGAGCATTCGTTTCACGCCAACCTGCCAGTCAGGCAAGGCAAGCGCAAAGTTCTGCTGAAATTTTTCTg                                                             >  1:6633478/1‑93 (MQ=255)
                             gCTGTAGTCGTAAATAATTCATTGAGCATTCGTTTCACGCCAACCTGCCAGTCAGGCAAGGCAAGCGCAAAGTTCTGCTGAAATTTTTCTGTa                                                           <  2:5253696/93‑1 (MQ=255)
                               tGTAGTCGTAAATAATTCATTGAGCATTCGTTTCACGCCAACCTGCCAGTCAGGCAAGGCAAGCGCAAAGTTCTGCTGAAATTTTTCTGTAtt                                                         >  1:4299630/1‑93 (MQ=255)
                               tGTAGTCGTAAATAATTCATTGAGCATTCGTTTCACGCCAACCTGCCAGTCAGGCAAGGCAAGCGCAAAGTTCTGCTGAAATTTTTCTGTAtt                                                         >  2:6241766/1‑93 (MQ=255)
                               tGTAGTCGTAAATAATTCATTGAGCATTCGTTTCACGCCAACCTGCCAGTCAGGCAAGGCAAGCGCAAAGTTCTGCTGAAATTTTTCTGTAtt                                                         <  2:3502849/93‑1 (MQ=255)
                                gTAGTCGTAAATAATTCATTGAGCATTCGTTTCACGCCAACCTGCCAGTCAGGCAAGGCAAGCGCAAAGTTCTGCTGAAATTTTTCTGTATTa                                                        >  2:6573404/1‑93 (MQ=255)
                                 tAGTCGTAAATAATTCATTGAGCATTCGTTTCACGCCAACCTGCCAGTCAGGCAAGGCAAGCGCAAAGTTCTGCTGAAATTTTTCTGTATTaa                                                       <  2:5607451/93‑1 (MQ=255)
                                 tAGTCGTAAATAATTCATTGAGCATTCGTTTCACGCCAACCTGCCAGTCAGGCAAGGCAAGCGCAAAGTTCTGCTGAAATTTTTCTGTATTaa                                                       <  2:1667361/93‑1 (MQ=255)
                                 tAGTCGTAAATAATTCATTGAGCATTCGTTTCACGCCAACCTGACAGTCAGGCAAGGCAAGCGCAAAGTTCTGCTGAAATTTTTCTGTATTaa                                                       <  2:3812412/93‑1 (MQ=255)
                                  aGTCGTAAATAATTCATTGAGCATTCGTTTCACGCCAACCTGCCAGTCAGGCAAGGCAAGCGCAAAGTTCTGCTGAAATTTTTCTGTATTAAg                                                      <  2:4136288/93‑1 (MQ=255)
                                  aGTCGTAAATAATTCATTGAGCATTCGTTTCACGCCAACCTGCCAGTCAGGCAAGGCAAGCGCAAAGTTCTGCTGAAATTTTTCTGTATTAAg                                                      <  2:4618274/93‑1 (MQ=255)
                                  aGTCGTAAATAATTCATTGAGCATTCGTTTCACGCCAACCTGCCAGTCAGGCAAGGCAAGCGCAAAGTTCTGCTGAAATTTTTCTGTATTAAg                                                      <  2:5993803/93‑1 (MQ=255)
                                   gTCGTAAATAATTCATTGAGCATTCGTTTCACGCCAACCTGCCAGTCAGGCAAGGCAAGCGCAAAGTTCTGCTGAAATTTTTCTGTATTAAgg                                                     <  1:5530121/93‑1 (MQ=255)
                                    tCGTAAATAATTCATTGAGCATTCGTTTCACGCCAACCTGCCAGTCAGGCAAGGCAAGCGCAAAGTTCTGCTGAAATTTTTCTGTATTAAGGc                                                    <  1:2831070/93‑1 (MQ=255)
                                    tCGTAAATAATGCATTGAGCATTCGTTTCACGCCAACCTGCCAGTCAGGCAAGGCAAGCGCAAAGTTCTGCTGAAATTTTTCTGTATTAAGGc                                                    <  2:1001159/93‑1 (MQ=255)
                                      gTAAATAATTCATTGAGCATTCGTTTCACGCCAACCTGCCAGTCAGGCAAGGCAAGCGCAAAGTTCTGCTGAAATTTTTCTGTATTAAGGCga                                                  >  1:6501934/1‑93 (MQ=255)
                                      gTAAATAATTCATTGAGCATTCGTTTCACGCCAACCTGCCAGTCAGGCAAGGCAAGCGCAAAGTTCTGCTGAAATTTTTCTGTATTAAGGCga                                                  >  2:5531261/1‑93 (MQ=255)
                                      gTAAATAATTCATTGAGCATTCGTTTCACGCCAACCTGCCAGTCAGGCAAGGCAAGCGCAAAGTTCTGCTGAAATTTTTCTGTATTAAGGCga                                                  <  1:2117903/93‑1 (MQ=255)
                                        aaaTAATTCATTGAGCATTCGTTTCACGCCAACCTGCCAGTCAGGCAAGGCAAGCGCAAAGTTCTGCTGAAATTTTTCTGTATTAAGGCgaga                                                <  1:2242489/93‑1 (MQ=255)
                                        aaaTAATTCATTGAGCATTCGTTTCACGCCAACCTGCCAGTCAGGCAAGGCAAGCGCAAAGTTCTGCTGAAATTTTTCTGTATTAAGGCgaga                                                >  1:1249546/1‑93 (MQ=255)
                                        aaaTAATTCATTGAGCATTCGTTTCACGCCAACCTGCCAGTCAGGCAAGGCAAGCGCAAAGTTCTGCTGAAATTTTTCTGTATTAACGCgaga                                                >  2:6440894/1‑93 (MQ=255)
                                         aataatTCATTGAGCATTCGTTTCACGCCAACCTGCCAGTCAGGCAAGGCAAGCGCAAAGTTCTGCTGAAATTTTTCTGTATTAAGGCGagag                                               <  2:2805834/93‑1 (MQ=255)
                                          ataatTCATTGAGCATTCGTTTCACGCCAACCTGCCAGTCAGGCAAGGCAAGCGCAAAGTTCTGCTGAAATTTTTCTGTATTAAGGCGAGAGt                                              >  2:1353445/1‑93 (MQ=255)
                                           taatTCATTGAGCATTCGTTTCACGCCAACCTGCCAGTCAGGCAAGGCAAGCGCAAAGTTCTGCTGAAATTTTTCTGTATTAAGGCGAGAGtt                                             >  1:1475089/1‑93 (MQ=255)
                                            aatTCATTGAGCATTCGTTTCACGCCAACCTGCCAGTCAGGCAAGGCAAGCGCAAAGTTCTGCTGAAATTTTTCTGTATTAAGGCGAGAGTTa                                            >  2:886858/1‑93 (MQ=255)
                                            aatTCATTGAGCATTCGTTTCACGCCAACCTGCCAGTCAGGCAAGGCAAGCGCAAAGTTCTGCTGAAATTTTTCTGTATTAAGGCGAGAGTTa                                            <  2:1984305/93‑1 (MQ=255)
                                             atTCATTGAGCATTCGTTTCATGCCAACCTGCCAGTCAGGCAAGGCAAGCGCAAAGTTCTGCTGAAATTTTTCTGTATTAAGGCGAGAGTTAt                                           <  2:4521182/93‑1 (MQ=255)
                                             atTCATTGAGCATTCGTTTCACGCCAACCTGCCAGTCAGGCAAGGCAAGCGCAAAGTTCTGCTGAAATTTTTCTGTATTAAGGCGAGAGTTAt                                           >  2:3027556/1‑93 (MQ=255)
                                             atTCATTGAGCATTCGTTTCACGCCAACCTGCCAGTCAGGCAAGGCAAGCGCAAAGTTCTGCTGAAATTTTTCTGTATTAAGGCGAGAGTTAt                                           >  2:3706777/1‑93 (MQ=255)
                                               tCATTGAGCATTCGTTTCACGCCAACCTGCCAGTCAGGCAAGGCAAGCGCAAAGTTCTGCTGAAATTTTTCTGTATTAAGGCGAGAGTTAtgt                                         <  1:4901087/93‑1 (MQ=255)
                                               tCATTGAGCATTCGTTTCACGCCAACCTGCCAGTCAGGCAAGGCAAGCGCAAAGTTCTGCTGAAATTTTTCTGTATTAAGGCGAGAGTTAtgt                                         <  2:3789704/93‑1 (MQ=255)
                                                cATTGAGCATTCGTTTCACGCCAACCTGCCAGTCAGGCAAGGCAAGCGCAAAGTTCTGCTGCAATTTTTCTGTATTAAGGCGAGAGTTAtgtg                                        >  1:2000720/1‑93 (MQ=255)
                                                cATTGAGCATTCGTTTCACGCCAACCTGCCAGTCAGGCAAGGCAAGCGCAAAGTTCTGCTGAAATTTTTCTGTATTAAGGCGAGAGTTAtgtg                                        <  1:3279779/93‑1 (MQ=255)
                                                cATTGAGCATTCGTTTCACGCCAACCTGCCAGTCAGGCAAGGCAAGCGCAAAGTTCTGCTGAAATTTTTCTGTATTAAGGCGAGAGTTAtgtg                                        <  2:1029808/93‑1 (MQ=255)
                                                cATTGAGCATTCGTTTCACGCCAACCTGCCAGTCAGGCAAGGCAAGCGCAAAGTTCTGCTGAAATTTTTCTGTATTAAGGCGAGAGTTAtgtg                                        <  1:821336/93‑1 (MQ=255)
                                                  ttGAGCATTCGTTTCACGCCAACCTGCCAGTCAGGCAAGGCAAGCGCAAAGTTCTGCTGAAATTTTTc                                                               >  1:3958433/1‑68 (MQ=255)
                                                  ttGAGCATTCGTTTCACGCCAACCTGCCAGTCAGGCAAGGCAAGCGCAAAGTTCTGCTGAAATTTTTc                                                               <  2:3958433/68‑1 (MQ=255)
                                                  ttGAGCATTCGTTTCACGCCAACCTGCCAGTCAGGCAAGGCAAGCGCAAAGTTCTGCTGAAATTTTTCTGTATTAAGGCGAGAGTTATGTGga                                      >  2:2149520/1‑93 (MQ=255)
                                                  ttGAGCATGCGTTTCACGCCAACCTGCCAGTCAGGCAAGGCAAGCGCAAAGTTCTGCTGAAATTTTTCTGTATTAAGGCGAGAGTTATGTGga                                      <  2:2297691/93‑1 (MQ=255)
                                                    gAGCATTCGTTTCACGCCAACCTGCCAGTCAGGCAAGGCAAGCGCAAAGTTCTGCTGAAATTTTTCTGTATTAAGGCGAGCGTTATGTGgacg                                    >  2:6694444/1‑93 (MQ=255)
                                                    gAGCATTCGTTTCACGCCAACCTGCCAGTCAGGCAAGGCAAGCGCAAAGTTCTGCTGAAATTTTTCTGTATTAAGGCGAGAGTTATGTGgacg                                    >  1:5131727/1‑93 (MQ=255)
                                                      gCATTCGTTTCACGCCAACCTGCCAGTCAGGCAAGGCAAGCGCAAAGTTCTGCTGAAATTTTTCTGTATTAAGGCGAGAGTTATGTGgacgac                                  >  2:1764003/1‑93 (MQ=255)
                                                       cATTCGTTTCACGCCAACCTGCCAGTCAGGCAAGGCAAGCGCAAAGTTCTGCTGAAATTTTTCTGTATTAAGGCGAGAGTTATGTGGacgacg                                 >  1:2211435/1‑93 (MQ=255)
                                                       aaTTAGTTTCACGCCAACCTGCCAGTCAGGCAAGGCAAGCGCAAAGTTCTGCTGAAATTTTTCTGTATTAAGGCGAGAGTTATGTGGacgacg                                 <  2:5073415/92‑1 (MQ=255)
                                                        aTTCGTTTCACGCCAACCTGCCAGTCAGGCAAGGCAAGCGCAAAGTTCTGCTGAAATTTTTCTGTATTAAGGCGAGAGTTATGTGGAcgacga                                <  2:1074959/93‑1 (MQ=255)
                                                         ttCGTTTCACGCCAACCTGCCAGTCAGGCAAGGCAAGCGCAAAGTTCTGCTGAAATTTTTCTGTATTAAGGCGAGAGTTATGTGGACGACGAg                               >  2:2383451/1‑93 (MQ=255)
                                                           cGTTTCACGCCAACCTGCCAGTCAGGCAAGGCAAGCGCAAAGTTCTGCTGAAATTTTTCTGTATTAAGGCGAGAGTTATGTGGACGACGAGCt                             <  2:3646231/93‑1 (MQ=255)
                                                           cGTTTCACGCCAACCTGCCAGTCAGGCAAGGCAAGCGCAAAGTTCTGCTGAAATTTTTCTGTATTAAGGCGAGAGTTATGTGGACGACGAGCt                             <  2:4808721/93‑1 (MQ=255)
                                                            gTTTCACGCCAACCTGCCAGTCAGGCAAGGCAAGCGCAAAGTTCTGCTGAAATTTTTCTGTATTAAGGCGAGAGTTATGTGGACGACGAGCTg                            >  2:2014481/1‑93 (MQ=255)
                                                            gTTTCACGCCAACCTGCCAGTCAGGCAAGGCAAGCGCAAAGTTCTGCTGAAATTTTTCTGTATTAAGGCGAGAGTTATGTGGACGACGAGCTg                            >  2:5001629/1‑93 (MQ=255)
                                                            gTTTCACGCCAACCTGCCAGTCAGGCAAGGCAAGCGCAAAGTTCTGCTGAAATTTTTCTGTATTAAGGCGAGAGTTATGTGGACGACGAGCTg                            <  2:3291087/93‑1 (MQ=255)
                                                                cACGCCAACCTGCCAGTCAGGCAAGGCAAGCGCAAAGTTCTGCTGAAATTTTTCTGTATTAAGGCGAGAGTTATGTGGACGACGAGCTGgtgt                        <  1:580403/93‑1 (MQ=255)
                                                                cACGCCAACCTGCCAGTCAGGCAAGGCAAGCGCAAAGTTCTGCTGAAATTTTTCTGTATTAAGGCGAGAGTTATGTGGACGACGAGCTGgtgt                        <  1:32110/93‑1 (MQ=255)
                                                                  cGCCACCCTGCCAGTCAGGCAAGGCAAGCGCAAAGTTCTGCTGAAATTTTTCTGTATTAAGGCGAGAGTTATGTGGACGACGAGCTGGTGTAg                      <  1:5718667/93‑1 (MQ=255)
                                                                    ccACCCTGCCAGTCAGGCAAGGCAAGCGCAAAGTTCTGCTGAAATTTTTCTGTATTAAGGCGAGAGTTATGTGGACGACGAGCTGGTGTAGGa                    <  2:6162217/93‑1 (MQ=255)
                                                                     cAACCTGCCAGTCAGGCAAGGCAAGCGCAAAGTTCTGCTGAAATTTTTCTGTATTAAGGCGAGAGTTATGTGGACGACGAGCTGGTGTAGGAt                   <  1:2068919/93‑1 (MQ=255)
                                                                     cAACCTGCCAGTCAGGCAAGGCAAGCGCAAAGTTCTGCTGAAATTTTTCTGTATTAAGGCGAGAGTTATGTGGACGACGAGCTGGTGTAGGAt                   >  1:2329902/1‑93 (MQ=255)
                                                                      aaCCTGCCAGTCAGGCAAGGCAAGCGCAAAGTTCTGCTGAAATTTTTCTGTATTAAGGCGAGAGTTATGTGGACGACGAGCTGGTGTAGGATa                  <  2:1229423/93‑1 (MQ=255)
                                                                       aCCTGCCAGTCAGGCAAGGCAAGCGCAAAGTTCTGCTGAAATTTTTCTGTATTAAGGCGAGAGTTATGTGGACGACGAGCTGGTGTAGGATAg                 <  2:442071/93‑1 (MQ=255)
                                                                       aCCTGCCAGTCAGGCAAGGCAAGCGCAAAGTTCTGCTGAAATTTTTCTGTATTAAGGCGAGAGTTATGTGGACGACGAGCTGGTGTAGGATAg                 >  2:2601104/1‑93 (MQ=255)
                                                                         cTGCCAGTCAGGCAAGGCAAGCGCAAAGTTCTGCTGAAATTTTTCTGTATTAAGGCGAGAGTTATGTGGACGACGAGCTGGTGTAGGATAGGc               <  2:636841/93‑1 (MQ=255)
                                                                           gCCAGTCAGGCAAGGCAAGCGCAAAGTTCTGCTGAAATTTTTCTGTATTAAGGCGAGAGTTATGTGGACGACGAGCTGGTGTAGGATAGGCtg             >  1:457001/1‑93 (MQ=255)
                                                                           gCCAGTCAGGCAAGGCAAGCGCAAAGTTCTGCTGAAATTTTTCTGTATTAAGGCGAGAGTTATGTGGACGACGAGCTGGTGTAGGATAGGCtg             >  1:1698351/1‑93 (MQ=255)
                                                                            ccAGTCAGGCAAGGCAAGCGCAAAGTTCTGCTGAATTTTTTCTGTATTAAGGCGAGAGTTATGTGGACGACGAGCTGGTGTAGGATAGGCtgt            <  1:3436884/93‑1 (MQ=255)
                                                                                tCAGGCAAGGCAAGCGCAAAGTTCTGCTGAAATTTTTCTGTATTAAGGCGAGAGTTATGTGGACGACGAGCTGGTGTAGGATAGGCTgttgtt        <  2:530333/93‑1 (MQ=255)
                                                                                     cAAGGCAAGCGCAAAGTTCTGCTGAAATTTTTCTGTATTAAGGCGAGAGTTATGTGGACGACGAGCTGGTGTAGGATAGGCTGTTGTTGGTAc   <  1:5860502/93‑1 (MQ=255)
                                                                                      aaGGCAAGCGCAAAGTTCTGCTGAAATTTTTCTGTATTAAGGCGAGAGTTATGTGGACGACGAGCTGGTGTAGGATAGGCTGTTGTTGGTACt  <  1:1308222/93‑1 (MQ=255)
                                                                                         |                                                                                         
CACGAACAAGATGCAAAAACTATTAAATTGCTGTAGTCGTAAATAATTCATTGAGCATTCGTTTCACGCCAACCTGCCAGTCAGGCAAGACAAGCGCAAAGTTCTGCTGAAATTTTTCTGTATTAAGGCGAGAGTTATGTGGACGACGAGCTGGTGTAGGATAGGCTGTTGTTGGTACT  >  NC_000913/2109077‑2109255

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
CATCACGAACAAGATGCAAAAACTATTAAATTGCTGTAGTCGTAAATAATTCATTGAGCATTCGTTTCACGCCAACCTGCCAGTCAGGCAAGACAAGCGCAAAGTTCTGCTGAAATTTTTCTGTATTAAGGCGAGAGTTATGTGGACGACGAGCTGGTGTAGGATAGGCTGTTGTTGGTACTGCG  >  NC_000913/2109074‑2109258
                                                                                            |                                                                                            
CATCACGAACAAGATGCAAAAACTATTAAATTGCTGTAGTCGTAAATAATTCATTGAGCATTCGTTTCACGCCAACCTGCCAGTCAGGCAAGGC                                                                                             <  SRR4302536.1078046/94‑1 (MQ=60)
CATCACGAACAAGATGCAAAAACTATTAAATTGCTGTAGTCGTAAATAATTCATTGAGCATTCGTTTCACGCCAACCTGCCAGTCAGGCAAGGC                                                                                             <  SRR4302536.2740330/94‑1 (MQ=60)
   CACGAACAAGATGCAAAAACTATTAAATTGCTGTAGTCGTAAATAATTCATTGAGCATTCGTTTCACGCCAACCTGCCAGTCAGGCAAGGCAAG                                                                                          <  SRR4302536.715917/94‑1 (MQ=60)
   CACGAACAAGATGCAAAAACTATTAAATTGCTGTAGTCGTAAATAATTCATTGAGCATTCGTTTCACGCCAACCTGCCAGTCAGGCAAGGCAAG                                                                                          <  SRR4302536.3017336/94‑1 (MQ=60)
   CACGAACAAGATGCAAAAACTATTAAATTGCTGTAGTCGTAAATAATTCATTGAGCATTCGTTTCACGCCAACCTGCCAGTCAGGCAAGGCAAG                                                                                          >  SRR4302536.4799616/1‑94 (MQ=60)
   CACGAACAAGATGCAAAAACTATTAAATTGCTGTAGTCGTAAATAATTCATTGAGCATTCGTTTCACGCCAACCTGCCAGTCAGGCAAGGCAAG                                                                                          >  SRR4302536.3366769/1‑94 (MQ=60)
    ACGAACAAGATGCAAAAACTATTAAATTGCTGTAGTCGTAAATAATTCATTGAGCATTCGTTTCACGCCAACCTGCCAGTCAGGCAAGGCAAGC                                                                                         <  SRR4302536.714/94‑1 (MQ=60)
    ACGAACAAGATGCAAAAACTATTAAATTGCTGTAGTCGTAAATAATTCATTGAGCATTCGTTTCACGCCAACCTGCCAGTCAGGCAAGGCAAGC                                                                                         >  SRR4302536.2085554/1‑94 (MQ=60)
     CGAACAAGATGCAAAAACTATTAAATTGCTGTAGTCGTAAATAATTCATTGAGCATTCGTTTCACGCCAACCTGCCAGTCAGGCAAGGCAAGCG                                                                                        >  SRR4302536.5398452/1‑94 (MQ=60)
     CGAACAAGATGCAAAAACTATTAAATTGCTGTAGTCGTAAATAATTCATTGAGCATTCGTTTCACGCCAACCTGCCAGTCAGGCAAGGCAAGCG                                                                                        <  SRR4302536.4999224/94‑1 (MQ=60)
     CGAACAAGATGCAAAAACTATTAAATTGCTGTAGTCGTAAATAATTCATTGAGCATTCGTTTCACGCCAACCTGCCAGTCAGGCAAGGCAAGCG                                                                                        <  SRR4302536.4341737/94‑1 (MQ=60)
      GAACAAGATGCAAAAACTATTAAATTGCTGTAGTCGTAAATAATTCATTGAGCATTCGTTTCACGCCAACCTGCCAGTCAGGCAAGGCAAGCGC                                                                                       >  SRR4302536.1719485/1‑94 (MQ=60)
      GAACAAGATGCAAAAACTATTAAATTGCTGTAGTCGTAAATAATTCATTGAGCATTCGTTTCACGCCAACCTGCCAGTCAGGCAAGGCAAGCGC                                                                                       >  SRR4302536.6030059/1‑94 (MQ=60)
         CAAGATGCAAAAACTATTAAATTGCTGTAGTCGTAAATAATTCATTGAGCATTCGTTTCACGCCAACCTGCCAGTCAGGCAAGGCAAGCGCAAA                                                                                    >  SRR4302536.6026659/1‑94 (MQ=60)
          AAGATGCAAAAACTATTAAATTGCTGTAGTCGTAAATAATTCATTGAGCATTCGTTTCACGCCAACCTGCCAGTCAGGCAAGGCAAGCGCAAAG                                                                                   >  SRR4302536.6456064/1‑94 (MQ=60)
          AAGATGCAAAAACTATTAAATTGCTGTAGTCGTAAATAATTCATTGAGCATTCGTTTCACGCCAACCTGCCAGTCAGGCAAGGCAAGCGCAAAG                                                                                   <  SRR4302536.29585/94‑1 (MQ=60)
            GATGCAAAAACTATTAAATTGCTGTAGTCGTAAATAATTCATTGAGCATTCGTTTCACGCCAACCTGCCAGTCAGGCAAGGCAAGCGCAAAGTT                                                                                 >  SRR4302536.2606258/1‑94 (MQ=60)
             ATGCAAAAACTATTAAATTGCTGTAGTCGTAAATAATTCATTGAGCATTCGTTTCACGCCAACCTGCCAGTCAGGCAAGGCAAGCGCAAAGTTC                                                                                >  SRR4302536.2555679/1‑94 (MQ=60)
             ATGCAAAAACTATTAAATTGCTGTAGTCGTAAATAATTCATTGAGCATTCGTTTCACGCCAACCTGCCAGTCAGGCAAGGCAAGCGCAAAGTTC                                                                                >  SRR4302536.5176551/1‑94 (MQ=60)
               GCAAAAACTATTAAATTGCTGTAGTCGTAAATAATTCATTGAGCATTCGTTTCACGCCAACCTGCCAGTCAGGCAAGGCAAGCGCAAAGTTCTG                                                                              >  SRR4302536.3993848/1‑94 (MQ=60)
               GCAAAAACTATTAAATTGCTGTAGTCGTAAATAATTCATTGAGCATTCGTTTCACGCCAACCTGCCAGTCAGGCAAGGCAAGCGCAAAGTTCTG                                                                              <  SRR4302536.4052299/94‑1 (MQ=60)
                CAAAAACTATTAAATTGCTGTAGTCGTAAATAATTCATTGAGCATTCGTTTCACGCCAACCTGCCAGTCAGGCAAGGCAAGCGCAAAGTTCTGC                                                                             <  SRR4302536.5017933/94‑1 (MQ=60)
                CAAAAACTATTAAATTGCTGTAGTCGTAAATAATTCATTGAGCATTCGTTTCACGCCAACCTGCCAGTCAGGCAAGGCAAGCGCAAAGTTCTGC                                                                             >  SRR4302536.2095250/1‑94 (MQ=60)
                CAAAAACTATTAAATTGCTGTAGTCGTAAATAATTCATTGAGCATTCGTTTCACGCCAACCTGCCAGTCAGGCAAGGCAAGCGCAAAGTTCTGC                                                                             >  SRR4302536.55036/1‑94 (MQ=60)
                CAAAAACTATTAAATTGCTGTAGTCGTAAATAATTCATTGAGCATTCGTTTCACGCCAACCTGCCAGTCAGGCAAGGCAAGCGCAAAGTTCTGC                                                                             >  SRR4302536.1655700/1‑94 (MQ=60)
                 AAAAACTATTAAATTGCTGTAGTCGTAAATAATTCATTGAGCATTCGTTTCACGCCAACCTGCCAGTCAGGCAAGGCAAGCGCAAAGTTCTGCT                                                                            >  SRR4302536.2089200/1‑94 (MQ=60)
                 AAAAACTATTAAATTGCTGTAGTCGTAAATAATTCATTGAGCATTCGTTTCACGCCAACCTGCCAGTCAGGCAAGGCAAGCGCAAAGTTCTGCT                                                                            >  SRR4302536.1064189/1‑94 (MQ=60)
                 AAAAACTATTAAATTGCTGTAGTCGTAAATAATTCATTGAGCATTCGTTTCACGCCAACCTGCCAGTCAGGCAAGGCAAGCGCAAAGTTCTGCT                                                                            <  SRR4302536.2721169/94‑1 (MQ=60)
                 AAAAACTATTAAATTGCTGTAGTCGTAAATAATTCATTGAGCATTCGTTTCACGCCAACCTGCCAGTCAGGCAAGGCAAGCGCAAAGTTCTGCT                                                                            <  SRR4302536.1741335/94‑1 (MQ=60)
                 AAAAACTATTAAATTGCTGTAGTCGTAAATAATTCATTGAGCATTCGTTTCACGCCAACCTGCCAGTCAGGCAAGGCAAGCGCAAAGTTCTGCT                                                                            >  SRR4302536.1550505/1‑94 (MQ=60)
                  AAAACTATTAAATTGCTGTAGTCGTAAATAATTCATTGAGCATTCGTTTCACGCCAACCTGCCAGTCAGGCAAGGCAAGCGCAAAGTTCTGCTG                                                                           >  SRR4302536.3848941/1‑94 (MQ=60)
                  AAAACTATTAAATTGCTGTAGTCGTAAATAATTCATTGAGCATTCGTTTCACGCCAACCTGCCAGTCAGGCAAGGCAAGCGCAAAGTTCTGCTG                                                                           >  SRR4302536.2940513/1‑94 (MQ=60)
                  AAAACTATTAAATTGCTGTAGTCGTAAATAATTCATTGAGCATTCGTTTCACGCCAACCTGCCAGTCAGGCAAGGCAAGCGCAAAGTTCTGCTG                                                                           <  SRR4302536.6178453/94‑1 (MQ=60)
                  AAAACTATTAAATTGCTGTAGTCGTAAATAATTCATTGAGCATTCGTTTCACGCCAACCTGCCAGTCAGGCAAGGCAAGCGCAAAGTTCTGCTG                                                                           <  SRR4302536.5666558/94‑1 (MQ=60)
                  AAAACTATTAAATTGCTGTAGTCGTAAATAATTCATTGAGCATTCGTTTCACGCCAACCTGCCAGTCAGGCAAGGCAAGCGCAAAGTTCTGCTG                                                                           >  SRR4302536.4119952/1‑94 (MQ=60)
                   AAACTATTAAATTGCTGTAGTCGTAAATAATTCATTGAGCATTCGTTTCACGCCAACCTGCCAGTCAGGCAAGGCAAGCGCAAAGTTCTGCTGA                                                                          >  SRR4302536.5154410/1‑94 (MQ=60)
                   AAACTATTAAATTGCTGTAGTCGCAAATAATTCATTGAGCATTCGTTTCACGCCAACCTGCCAGTCAGGCAAGGCAAGCGCAAAGTTCTGCTGA                                                                          >  SRR4302536.670513/1‑94 (MQ=60)
                    AACTATTAAATTGCTGTAGTCGTAAATAATTCATTGAGCATTCGTTTCACGCCAACCTGCCAGTCAGGCAAGGCAAGCGCAAAGTTCTGCTGAA                                                                         >  SRR4302536.1847288/1‑94 (MQ=60)
                    AACTATTAAATTGCTGTAGTCGTAAATAATTCATTGAGCATTCGTTTCACGCCAACCTGCCAGTCAGGCAAGGCAAGCGCAAAGTTCTGCTGAA                                                                         >  SRR4302536.2804334/1‑94 (MQ=60)
                      CTATTAAATTGCTGTAGTCGTAAATAATTCATTGAGCATTCGTTTCACGCCAACCTGCCAGTCAGGCAAGGCAAGCGCAAAGTTCTGCTGAAAT                                                                       <  SRR4302536.3671395/94‑1 (MQ=60)
                      CTATTAAATTGCTGTAGTCGTAAATAATTCATTGAGCATTCGTTTCACGCCAACCTGCCAGTCAGGCAAGGCAAGCGCAAAGTTCTGCTGAAAT                                                                       >  SRR4302536.5850982/1‑94 (MQ=60)
                       TATTAAATTGCTGTATTCGTAAATAATTCATTGAGCATTCGTTTCACGCCACCCTGCCAGTCAGGCAAGGCAAGCGCCATGTTCTGCTGAAATT                                                                      >  SRR4302536.551604/1‑94 (MQ=60)
                       TATTAAATTGCTGTAGTCGTAAATAATTCATTGAGCATTCGTTTCACGCCAACCTGCCAGTCAGGCAAGGCAAGCGCAAAGTTCTGCTGAAATT                                                                      <  SRR4302536.6590879/94‑1 (MQ=60)
                       TATTAAATTGCTGTAGTCGTAAATAATTCATTGAGCATTCGTTTCACGCCAACCTGCCAGTCAGGCAAGGCAAGCGCAAAGTTCTGCTGAAATT                                                                      <  SRR4302536.2823317/94‑1 (MQ=60)
                        ATTAAATTGCTGTAGTCGTAAATAATTCATTGAGCATTCGTTTCACGCCAACCTGCCAGTCAGGCAAGGCAAGCGCAAAGTTCTGCTGAAATTT                                                                     <  SRR4302536.975225/94‑1 (MQ=60)
                        ATTAAATTGCTGTAGTCGTAAATAATTCATTGAGCATTCGTTTCACGCCAACCTGCCAGTCAGGCAAGGCAAGCGCAAAGTTCTGCTGAAATTT                                                                     <  SRR4302536.5616354/94‑1 (MQ=60)
                          TAAATTGCTGTAGTCGTAAATAATTCATTGAGCATTCGTTTCACGCCAACCTGCCAGTCAGGCAAGGCAAGCGCAAAGTTCTGCTGAAATTTTT                                                                   <  SRR4302536.1537493/94‑1 (MQ=60)
                            AATTGCTGTAGTCGTAAATAATTCATTGAGCATTCGTTTCACGCCAACCTGCCAGTCAGGCAAGGCAAGCGCAAAGTTCTGCTGAAATTTTTCT                                                                 >  SRR4302536.2750353/1‑94 (MQ=60)
                            AATTGCTGTAGTCGTAAATAATTCATTGAGCATTCGTTTCACGCCAACCTGCCAGTCAGGCAAGGCAAGCGCAAAGTTCTGCTGAAATTTTTCT                                                                 >  SRR4302536.2282257/1‑94 (MQ=60)
                             ATTGCTGTAGTCGTAAATAATTCATTGAGCATTCGTTTCACGCCAACCTTCCAGTCAGGCAAGGCAAGCGCAAAGTTCTGCTGAAATTTTTTTG                                                                >  SRR4302536.8388/1‑94 (MQ=60)
                             ATTGCTGTAGTCGTAAATAATTCATTGAGCATTCGTTTCACGCCAACCTGCCAGTCAGGCAAGGCAAGCGCAAAGTTCTGCTGAAATTTTTCTG                                                                >  SRR4302536.6830780/1‑94 (MQ=60)
                             ATTGCTGTAGTCGTAAATAATTCATTGAGCATTCGTTTCACGCCAACCTGCCAGTCAGGCAAGGCAAGCGCAAAGTTCTGCTGAAATTTTTCTG                                                                >  SRR4302536.3782507/1‑94 (MQ=60)
                              TTGCTGTAGTCGTAAATAATTCATTGAGCATTCGTTTCACGCCAACCTGCCAGTCAGGCAAGGCAAGCGCAAAGTTCTGCTGAAATTTTTCTGT                                                               >  SRR4302536.409264/1‑94 (MQ=60)
                               TGCTGTAGTCGTAAATAATTCATTGATCATTCGTTTCACGCCAACCTGCCAGTCAGGCAAGGCAAGCGCAAAGTTCTGATGAAATTTTTCTGTA                                                              >  SRR4302536.5600624/1‑94 (MQ=60)
                                 CTGTAGTCGTAAATAATTCATTGAGCATTCGTTTCACGCCAACCTGCCAGTCAGGCAAGGCAAGCGCAAAGTTCTGCTGAAATTTTTCTGTATT                                                            >  SRR4302536.4428170/1‑94 (MQ=60)
                                 CTGTAGTCGTAAATAATTCATTGAGCATTCGTTTCACGCCAACCTGCCAGTCAGGCAAGGCAAGCGCAAAGTTCTGCTGAAATTTTTCTGTATA                                                            >  SRR4302536.5121692/1‑94 (MQ=60)
                                  TGTAGTCGTAAATAATTCATTGAGCATTCGTTTCACGCCAACCTGCCAGTCAGGCAAGGCAAGCGCAAAGTTCTGCTGAAATTTTTCTGTATTA                                                           >  SRR4302536.2302746/1‑94 (MQ=60)
                                     AGTCGTAAATAATTCATTGAGCATTCGTTTCACGCCAACCTGCCAGTCAGGCAAGGCAAGCGCAAAGTTCTGCTGAAATTTTTCTGTATTAAGG                                                        >  SRR4302536.145989/1‑94 (MQ=60)
                                      GTCGTAAATAATTCATTGAGCATTCGTTTCACGCCAACCTGCCAGTCAGGCAAGGCAAGCGCAAAGTTCTGCTGAAATTTTTCTGTATTAAGGC                                                       <  SRR4302536.5694987/94‑1 (MQ=60)
                                      GTCGTAAATAATTCATTGAGCATTCGTTTCACGCCAACCTGCCAGTCAGGCAAGGCAAGCGCAAAGTTCTGCTGAAATTTTTCTGTATTAAGGC                                                       >  SRR4302536.1385474/1‑94 (MQ=60)
                                      GTCGCAAATAATTCATTGAGCATTCGTTTCACGCCAACCTGCCAGTCAGGCAAGGCAAGCGCAAAGTTCTGCTGAAATTTTTCTGTATTAAGGC                                                       <  SRR4302536.6562116/94‑1 (MQ=60)
                                       TCGTAAATAATTCATTGAGCATTCGTTTCACGCCAACCTGCCAGTCAGGCAAGGCAAGCGCAAAGTTCTGCTGAAATTTTTCTGTATTAAGGCG                                                      <  SRR4302536.2914884/94‑1 (MQ=60)
                                        CGTAAATAATTCATTGAGCATTCGTTTCACGCCAACCTGCCAGTCAGGCAAGGCAAGCGCAAAGTTCTGCTGAAATTTTTCTGTATTAAGGCGA                                                     >  SRR4302536.6695711/1‑94 (MQ=60)
                                         GTAAATAATTCATTGAGCATTCGTTTCACGCCAACCTGCCAGTCAGGCAAGGCAAGCGCAAAGTTCTGCTGAAATTTTTCTGTATTAAGGCGAG                                                    <  SRR4302536.2181539/94‑1 (MQ=60)
                                          TAAATAATTCATTGAGCATTCGTTTCACGCCAACCTGCCAGTCAGGCAAGGCAAGCGCAAAGTTCTGCTGAAATTTTTCTGTATTAAGGCGAGA                                                   >  SRR4302536.1287065/1‑94 (MQ=60)
                                           AAATAATTCATTGAGCATTCGTTTCACGCCAACCTGCCAGTCAGGCAAGGCAAGCGCAAAGTTCTGCTGAAATTTTTCTGTATTAAGGCGAGAG                                                  <  SRR4302536.2310351/94‑1 (MQ=60)
                                            AATAATTCATTGAGCATTCGTTTCACGCCAACCTGCCAGTCAGGCAAGGCAAGCGCAAAGTTCTGCTGAAATTTTTCTGTATTAAGGCGAGAGT                                                 >  SRR4302536.3570976/1‑94 (MQ=60)
                                             ATAATTCATTGAGCATTCGTTTCACGCCAACCTGCCAGTCAGGCAAGGCAAGCGCAAAGTTCTGCTGAAATTTTTCTGTATTAAGGCGAGAGTT                                                >  SRR4302536.1518695/1‑94 (MQ=60)
                                              TAATTCATTGAGCATTCGTTTCACGCCAACCTGCCAGTCAGGCAAGGCAAGCGCAAAGTTCTGCTGAAATTTTTCTGTATTAAGGCGAGAGTTA                                               >  SRR4302536.3442221/1‑94 (MQ=60)
                                                ATTCATTGAGCATTCGTTTCACGCCAACCTGCCAGTCAGGCAAGGCAAGCGCAAAGTTCTGCTGAAATTTTTCTGTATTAAGGCGAGAGTTATG                                             <  SRR4302536.1242905/94‑1 (MQ=60)
                                                ATTCATTGAGCATTCGTTTCACGCCAACCTGCCAGTCAGGCAAGGCAAGCGCAAAGTTCTGCTGAAATTTTTCTGTATTAAGGCGAGAGTTATG                                             >  SRR4302536.5868238/1‑94 (MQ=60)
                                                  TCATTGAGCATTCGTTTCACGCCAACCTGCCAGTCAGGCAAGGCAAGCGCAAAGTTCTGCTGCAATTTTTCTGTATTAAGGCGAGAGTTATGTG                                           >  SRR4302536.2060932/1‑94 (MQ=60)
                                                  TCATTGAGCATTCGTTTCACGCCAACCTGCCAGTCAGGCAAGGCAAGCGCAAAGTTCTGCTGAAATTTTTCTGTATTAAGGCGAGAGTTATGTG                                           <  SRR4302536.5048470/94‑1 (MQ=60)
                                                  TCATTGAGCATTCGTTTCACGCCAACCTGCCAGTCAGGCAAGGCAAGCGCAAAGTTCTGCTGAAATTTTTCTGTATTAAGGCGAGAGTTATGTG                                           <  SRR4302536.5919693/94‑1 (MQ=60)
                                                   CATTGAGCATTCGTTTCACGCCAACCTGCCAGTCAGGCAAGGCAAGCGCAAAGTTCTGCTGAAATTTTTCTGTATTAAGGCGAGAGTTATGTGG                                          <  SRR4302536.3376204/94‑1 (MQ=60)
                                                   CATTGAGCATTCGTTTCACGCCAACCTGCCAGTCAGGCAAGGCAAGCGCAAAGTTCTGCTGAAATTTTTCTGTATTAAGGCGAGAGTTATGTGG                                          <  SRR4302536.845505/94‑1 (MQ=60)
                                                   CATTGAGCATTCGTTTCACGCCAACCTGCCAGTCAGGCAAGGCAAGCGCAAAGTTCTGCTGAAATTTTTCTGTATTAAGGCGAGAGTTATGTGG                                          >  SRR4302536.2748406/1‑94 (MQ=60)
                                                    ATTGAGCATTCGTTTCACGCCAACCTGCCAGTCAGGCAAGGCAAGCGCAAAGTTCTGCTGAAATTTTTCTaccttagagatcggaagagcgtcg                                         >  SRR4302536.4075980/1‑70 (MQ=60)
                                                     TTGAGCATTCGTTTCACGCCAACCTGCCAGTCAGGCAAGGCAAGCGCAAAGTTCTGCTGAAATTTTTCTGTATTAAGGCGAGAGTTATGTGGAC                                        <  SRR4302536.4382397/94‑1 (MQ=60)
                                                     TTGAGCATTCGTTTCACGCCAACCTGCCAGTCAGGCAAGGCAAGCGCAAAGTTCTGCTGAAATTTTTCTGTATTAAGGCGAGAGTTATGTGGAC                                        <  SRR4302536.2983922/94‑1 (MQ=60)
                                                      TGAGCATTCGTTTCACGCCAACCTGCCAGTCAGGCAAGGCAAGCGCAAAGTTCTGCTGAAATTTTTCTGTATTAAGGCGAGAGTTATGTGGCCG                                       >  SRR4302536.3153412/1‑94 (MQ=60)
                                                      TGAGCATTCGTTTCACGCCAACCTGCCAGTCAGGCAAGGCAAGCGCAAAGTTCTGCTGAAATTTTTCTGTATTAAGGCGAGAGTTATGTGGACG                                       >  SRR4302536.5284991/1‑94 (MQ=60)
                                                        AGCATTCGTTTCACGCCAACCTGCCAGTCAGGCAAGGCAAGCGCAAAGTTCTGCTGAAATTTTTCTGTATTAAGGCGAGAGTTATGTGGACGAC                                     <  SRR4302536.3069249/94‑1 (MQ=60)
                                                         GCATTCGTTTCACGCCAACCTGCCAGTCAGGCAAGGCAAGCGCAAAGTTCTGCTGAAATTTTTCTGTATTAAGGCGAGAGTTATGTGGACGACG                                    >  SRR4302536.2278219/1‑94 (MQ=60)
                                                          CATTCGTTTCACGCCAACCTGCCAGTCAGGCAAGGCAAGCGCAAAGTTCTGCTGAAATTTTTCTGTATTAAGGCGAGAGTTATGTGGACGACGA                                   >  SRR4302536.3533598/1‑94 (MQ=60)
                                                            TTCGTTTCACGCCAACCTGCCAGTCAGGCAAGGCAAGCGCAAAGTTCTGCTGAAATTTTTCTGTATTAAGGCGAGAGTTATGTGGACGACGAGC                                 >  SRR4302536.1331306/1‑94 (MQ=60)
                                                              CGTTTCACGCCAACCTGCCAGTCAGGCAAGGCAAGCGCAAAGTTCTGCTGAAATTTTTCTGTATTAAGGCGAGAGTTATGTGGACGACGAGCTG                               >  SRR4302536.2463882/1‑94 (MQ=60)
                                                              CGTTTCACGCCAACCTGCCAGTCAGGCAAGGCAAGCGCAAAGTTCTGCTGAAATTTTTCTGTATTAAGGCGAGAGTTATGTGGACGACGAGCTG                               <  SRR4302536.5843776/94‑1 (MQ=60)
                                                              CGTTTCACGCCAACCTGCCAGTCAGGCAAGGCAAGCGCAAAGTTCTGCTGAAATTTTTCTGTATTAAGGCGAGAGTTATGTGGACGACGAGCTG                               <  SRR4302536.26907/94‑1 (MQ=60)
                                                                TTTCACGCCAACCTGCCAGTCAGGCAAGGCAAGCGCAAAGTTCTGCTGAAATTTTTCTGTATTAAGGCGAGAGTTATGTGGACGACGAGCTGGT                             <  SRR4302536.4924825/94‑1 (MQ=60)
                                                                 TTCACGCCAACCTGCCAGTCAGGCAAGGCAAGCGCAAAGTTCTGCTGAAATTTTTCTGTATTAAGGCGAGAGTTATGTGGACGACGAGCTGGTG                            >  SRR4302536.4854387/1‑94 (MQ=60)
                                                                   CACGCCAACCTGCCAGTCAGGCAAGGCAAGCGCAAAGTTCTGCTGAAATTTTTCTGTATTAAGGCGAGAGTTATGTGGACGACGAGCTGGTGTA                          <  SRR4302536.595134/94‑1 (MQ=60)
                                                                   CACGCCAACCTGCCAGTCAGGCAAGGCAAGCGCAAAGTTCTGCTGAAATTTTTCTGTATTAAGGCGAGAGTTATGTGGACGACGAGCTGGTGTA                          <  SRR4302536.33002/94‑1 (MQ=60)
                                                                    CCGCCAACCTGCCAGTCAGGCAAGGCAAGCGCAAAGTTCTGCTGAAATTTTTCTGTATTAAGGCGAGAGTTATGTGGACGACGAGCTGGTGTAG                         <  SRR4302536.4728338/94‑1 (MQ=60)
                                                                    ACGCCAACCTGCCAGTCAGGCAAGGCAAGCGCAAAGTTCTGCTGAAATTTTTCTGTATTAAGGCGAGAGTTATGTGGACGACGAGCTGGTGTAG                         <  SRR4302536.2118593/94‑1 (MQ=60)
                                                                    ACGCCAACCTGCCAGTCAGGCAAGGCAAGCGCAAAGTTCTGCTGAAATTTTTCTGTATTAAGGCGAGAGTTATGTGGACGACGAGCTGGTGTAG                         <  SRR4302536.3722911/94‑1 (MQ=60)
                                                                     CGCCACCCTGCCAGTCAGGCAAGGCAAGCGCAAAGTTCTGCTGAAATTTTTCTGTATTAAGGCGAGAGTTATGTGGACGACGAGCTGGTGTAGG                        <  SRR4302536.5888728/94‑1 (MQ=60)
                                                                      GCCAACCTGCCAGTCAGGCAAGGCAAGCGCAAAGTTCTGCTGAAATTTTTCTGTATTAAGGCGAGAGTTATGTGGACGACGAGCTGGTGTAGGA                       >  SRR4302536.2683681/1‑94 (MQ=60)
                                                                      GCCAACCTGCCAGTCAGGCAAGGCAAGCGCAAAGTTCTGCTGAAATTTTTCTGTATTAAGGCGAGAGTTATGTGGACGACGAGCTGGTGTAGGA                       >  SRR4302536.2195251/1‑94 (MQ=60)
                                                                       CCAACCTGCCAGTCAGGCAAGGCAAGCGCAAAGTTCTGCTGAAATTTTTCTGTATTAAGGCGAGAGTTATGTGGccgagaggctggtgtaggtt                      >  SRR4302536.5237235/1‑74 (MQ=60)
                                                                       CCAACCTGCCAGTCAGGCAAGGCAAGCGCAAAGTTCTGCTGAAATTTTTCTGTATTAAGGCGAGAGTTATGTGGACGACGAGCTGGTGTAGGAT                      >  SRR4302536.2400597/1‑94 (MQ=60)
                                                                        CAACCTGCCAGTCAGGCAAGGCAAGCGCAAAGTTCTGCTGAAATTTTTCTGTATTAAGGCGAGAGTTATGTGGACGACGAGCTGGTGTAGGATA                     <  SRR4302536.2131240/94‑1 (MQ=60)
                                                                        CAACCTGCCAGTCAGGCAAGGCAAGCGCAAAGTTCTGCTGAAATTTTTCTGTATTAAGGCGAGAGTTATGTGGACGACGAGCTGGTGTAGGATA                     >  SRR4302536.1530392/1‑94 (MQ=60)
                                                                         AACCTGCCAGTCAGGCAAGGCAAGCGCAAAGTTCTGCTGAAATTTTTCTGTATTAAGGCGAGAGTTATGTGGACGACGAGCTGGTGTAGGATAG                    >  SRR4302536.1902695/1‑94 (MQ=60)
                                                                          ACCTGCCAGTCAGGCAAGGCAAGCGCAAAGTTCTGCTGAAATTTTTCTGTATTAAGGCGAGAGTTATGTGGACGACGAGCTGGTGTAGGATAGG                   >  SRR4302536.2323542/1‑94 (MQ=60)
                                                                            CTGCCAGTCAGGCAAGGCAAGCGCAAAGTTCTGCTGAAATTTTTCTGTATTAAGGCGAGAGTTATGTGGACGACGAGCTGGTGTAGGATAGGCT                 <  SRR4302536.5800457/94‑1 (MQ=60)
                                                                            CTGCCAGTCAGGCAAGGCAAGCGCAAAGTTCTGCTGAAATTTTTCTGTATTAAGGCGAGAGCTATGTGGACGACGAGCTGGTGTAGGATAGGCT                 >  SRR4302536.4747170/1‑94 (MQ=60)
                                                                             TGCCAGTCAGGCAAGGCAAGCGCAAAGTTCTGCTGAAATTTTTCTGTATTAAGGCGAGAGTTATGTGGACGACGAGCTGGTGTAGGATAGGCTG                >  SRR4302536.2937216/1‑94 (MQ=60)
                                                                             TGCCAGTCAGGCAAGGCAAGCGCAAAGTTCTGCTGAAATTTTTCTGTATTAAGGCGAGAGTTATGTGGACGACGAGCTGGTGTAGGATAGGCTG                >  SRR4302536.5906229/1‑94 (MQ=60)
                                                                             TGCCAGTCAGGCAAGGCAAGCGCAAAGTTCTGCTGAAATTTTTCTGTATTAAGGCGAGAGTTATGTGGACGACGAGCTGGTGTAGGATAGGCTG                >  SRR4302536.1747493/1‑94 (MQ=60)
                                                                             TGCCAGTCAGGCAAGGCAAGCGCAAAGTTCTGCTGAAATTTTTCTGTATTAAGGCGAGAGTTATGTGGACGACGAGCTGGTGTAGGATAGGCTG                >  SRR4302536.468978/1‑94 (MQ=60)
                                                                               CCAGTCAGGCAAGGCAAGCGCAAAGTTCTGCTGAATTTTTTCTGTATTAAGGCGAGAGTTATGTGGACGACGAGCTGGTGTAGGATAGGCTGTT              <  SRR4302536.3539223/94‑1 (MQ=60)
                                                                               CCAGTCAGGCAAGGCAAGCGCAAAGTTCTGCTGAAATTTTTCTGTATTAAGGCGAGAGTTATGTGGACGACGAGCTGGTGTAGGATAGGCTGTT              <  SRR4302536.1529418/94‑1 (MQ=60)
                                                                               CCAGTCAGGCAAGGCAAGCGCAAAGTTCTGCTGAAATTTTTCTGTATTAAGGCGAGAGTTATGTGGACGACGAGCTGGTGTAGGATAGGCTGTT              <  SRR4302536.2178561/94‑1 (MQ=60)
                                                                               CCAGTCAGGCAAGGCAAGCGCAAAGTTCTGCTGAAATTTTTCTGTATTAAGGCGAGAGTTATGTGGACGACGAGCTGGTGTAGGATAGGCTGTT              <  SRR4302536.4694708/94‑1 (MQ=60)
                                                                                CAGTCAGGCAAGGCAAGCGCAAAGTTCTGCTGAAATTTTTCTGTATTAAGGCGAGAGTTATGTGGACGACGAGCTGGTGTAGGATAGGCTGTTG             <  SRR4302536.1303086/94‑1 (MQ=60)
                                                                                  GTCAGGCAAGGCAAGCGCAAAGTTCTGCTGAAATTTTTCTGTATTAAGGCGAGAGTTATGTGGACGACGAGCTGGTGTAGGATAGGCTGTTGTT           <  SRR4302536.721013/94‑1 (MQ=60)
                                                                                   TCAGGCAAGGCAAGCGCAAAGTTCTGCTGAAATTTTTCTGTATTAAGGCGAGAGTTATGTGGACGACGAGCTGGTGTAGGATAGGCTGTTGTTG          <  SRR4302536.6891369/94‑1 (MQ=60)
                                                                                      GGCAAGGCAAGCGCAAAGTTCTGCTGAAATTTTTCTGTATTAAGGCGAGAGTTATGTGGACGACGAGCTGGTGTAGGATAGGCTGTTGTTGGTA       <  SRR4302536.2178869/94‑1 (MQ=60)
                                                                                        CAAGGCAAGCGCAAAGTTCTGCTGAAATTTTTCTGTATTAAGGCGAGAGTTATGTGGACGACGAGCTGGTGTAGGATAGGCTGTTGTTGGTACT     <  SRR4302536.6035098/94‑1 (MQ=60)
                                                                                         AAGGCAAGCGCAAAGTTCTGCTGAAATTTTTCTGTATTAAGGCGAGAGTTATGTGGACGACGAGCTGGTGTAGGATAGGCTGTTGTTGGTACTG    <  SRR4302536.1347272/94‑1 (MQ=60)
                                                                                         AAGGCAAGCGCAAAGTTCTGCTGAAATTTTTCTGTATTAAGGCGAGAGTTATGTGGACGACGAGCTGGTGTAGGATAGGCTGTTGTTGGTACTG    <  SRR4302536.533520/94‑1 (MQ=60)
                                                                                          AGGCAAGCGCAAAGTTCTGCTGAAATTTTTCTGTATTAAGGCGAGAGTTATGTGGACGACGAGCTGGTGTAGGATAGGCTGTTGTTGGTACTGC   >  SRR4302536.3225380/1‑94 (MQ=60)
                                                                                           GGCAAGCGCAAAGTTCTGCTGAAATTTTTCTGTATTAAGGCGAGAGTTATGTGGACGACGAGCTGGTGTAGGATAGGCTGTTGTTGGTACTGCG  <  SRR4302536.42968/94‑1 (MQ=60)
                                                                                            |                                                                                            
CATCACGAACAAGATGCAAAAACTATTAAATTGCTGTAGTCGTAAATAATTCATTGAGCATTCGTTTCACGCCAACCTGCCAGTCAGGCAAGACAAGCGCAAAGTTCTGCTGAAATTTTTCTGTATTAAGGCGAGAGTTATGTGGACGACGAGCTGGTGTAGGATAGGCTGTTGTTGGTACTGCG  >  NC_000913/2109074‑2109258

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑