Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1475	266.7	13469680	98.2%	13227225	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,111,589	A→G	M254T (ATG→ACG)	galF ←	putative a UDP‑gal transferase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,111,589	0	A	G	100.0%	681.9 / NA	208	M254T (ATG→ACG)	galF	putative a UDP‑gal transferase
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (110/98); total (110/98)

Only 100 of 209 total aligned reads displayed.

CCTTCTTTCAGGTTGCGTAGGCCATACTTCACAAACGCCTGCATATAGCCCA‑TTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCATTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCTGAATACGTCCCCATGCACCAGGCTGAGTACGTTCCAGT  >  NC_000913/2111499‑2111678

ccTTCTTTCAGGTTGCGTAGGCCATACTTCACAAACGCCTGCATATAGCCCA‑TTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGtt                                                                                         <  1:2431089/93‑1 (MQ=255)

ccTTCTTTCAGGTTGCGTAGGCCATACTTCACAAACGCCTGCATATAGCCCA‑TTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGtt                                                                                         >  2:4717517/1‑93 (MQ=255)

ccTTCTTTCAGGTTGCGTAGGCCATACTTCACAAACGCCTGCATATAGCCCA‑TTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGtt                                                                                         <  1:175648/93‑1 (MQ=255)

 cttcttTCAGGTTGCGTAGGCCATACTTCACAAACGCCTGCATATAGCCCA‑TTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTg                                                                                        <  1:1259436/93‑1 (MQ=255)

 cttcttTCAGGTTGCGTAGGCCATACTTCACAAACGCCTGCATATAGCCCA‑TTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTg                                                                                        >  1:3018249/1‑93 (MQ=255)

    cttTCAGGTTGCGTAGGCCATACTTCACAAACGCCTGCATATAGCCCA‑TTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCAt                                                                                     >  2:5919969/1‑93 (MQ=255)

    cttTCAGGTTGCGTAGGCCATACTTCACAAACGCCTGCATATAGCCCA‑TTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCAt                                                                                     >  2:1691921/1‑93 (MQ=255)

     tttCAGGTTGCGTAGGCCATACTTCACAAACGCGTGCATATAGCCCA‑TTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATc                                                                                    >  2:6545914/1‑93 (MQ=255)

     tttCAGGTTGCGTAGGCCATACTTCACAAACGCCTGCATATAGCCCA‑TTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATc                                                                                    <  1:1575321/93‑1 (MQ=255)

        cAGGTTGCGTAGGCCATACTTCACAAACGCCTGCATATAGCCCA‑TTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAAc                                                                                 <  2:3425915/93‑1 (MQ=255)

        cAGGTTGCGTAGGCCATACTTCACAAACGCCTGCATATAGCCCA‑TTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAAc                                                                                 <  1:2689394/93‑1 (MQ=255)

          ggTTGCGTAGGCCATACTTCACAAACGCCTGCATATAGCCCA‑TTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACgg                                                                               >  2:5273492/1‑93 (MQ=255)

          ggTTGCGTAGGCCATACTTCACAAACGCCTGCATATAGCCCA‑TTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACgg                                                                               >  2:3305263/1‑93 (MQ=255)

           gTTGCGTAGGCCATACTTCACAAACGCCTGCATATAGCCCA‑TTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGa                                                                              >  2:947505/1‑93 (MQ=255)

           gTTGCGTAGGCCATACTTCACAAACGCCTGCATATAGCCCA‑TTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGa                                                                              <  1:5705413/93‑1 (MQ=255)

              gCGTAGGCCATACTTCACAAACGCCTGCATATAGCCCA‑TTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTg                                                                           >  2:2421403/1‑93 (MQ=255)

               cGTAGGCCATACTCCACAAACGCCTCCATATAGCCCA‑TTTTTTTGCCGCAGTCGTAACTGTCGCGGGTCATCAGCGTTGCATCAACGGATTGt                                                                          <  1:6673799/93‑1 (MQ=255)

                gTAGGCCATACTTCACAAACGCCTGCATATAGCCCA‑TTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGtt                                                                         >  1:901371/1‑93 (MQ=255)

                gTAGGCCATACTTCACAAACGCCTGCATATAGCCCA‑TTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGtt                                                                         <  1:2682728/93‑1 (MQ=255)

                gTAGGCCATACTTCACAAACGCCTGCATATAGCCCA‑TTTTTTTGCCGCAGTCGTAACTGTCACCGGTCATCAGCGTTGCATCAACGGATTGtt                                                                         <  1:5343109/93‑1 (MQ=255)

                  aGGCCATACTTCACAAACGCCTGCATATAGCCCA‑TTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGtttt                                                                       >  1:5643742/1‑93 (MQ=255)

                  aGGCCATACTTCACAAACGCCTGCATATAGCCCA‑TTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGtttt                                                                       <  2:718006/93‑1 (MQ=255)

                  aGGCCATACTTCACAAACGCCTGCATATAGCCCA‑TTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGtttt                                                                       <  1:213228/93‑1 (MQ=255)

                   ggCCATACTTCACAAACGCCTGCATATAGCCCA‑TTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGttttt                                                                      <  1:1071326/93‑1 (MQ=255)

                      cATACTTCACAAACGCCTGCATATAGCCCA‑TTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCg                                                                   >  2:6305017/1‑93 (MQ=255)

                      cATACTTCACAAACGCCTGCATATAGCCCA‑TTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCg                                                                   >  1:4236122/1‑93 (MQ=255)

                       aTACTTCACAAACGCCTGCATATAGCCCA‑TTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGc                                                                  >  1:5772464/1‑93 (MQ=255)

                        tACTTCACAAACGCCTGCATATAGCCCA‑TTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGcc                                                                 >  1:3371137/1‑93 (MQ=255)

                         aCTTCACAAACGCCTGCATATAGCCCA‑TTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCa                                                                <  2:970165/93‑1 (MQ=255)

                           ttCACAAACGCCTGCATATAGCCCA‑TTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGc                                                              <  2:158424/93‑1 (MQ=255)

                              acaAACGCCTGCATATAGCCCA‑TTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCg                                                           <  1:2183406/93‑1 (MQ=255)

                              acaAACGCCTGCATATAGCCCA‑TTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCg                                                           <  2:3944852/93‑1 (MQ=255)

                               caAACGCCTGCATATAGCCCA‑TTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCgg                                                          >  1:3570097/1‑93 (MQ=255)

                                aaaCGCCTGCATATAGCCCA‑TTTTGTTGCCGCAGTGGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGc                                                         <  1:3154961/93‑1 (MQ=255)

                                   cGCCTGCATATAGCCCA‑TTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAAt                                                      <  2:2508408/93‑1 (MQ=255)

                                     ccTGCATATAGCCCA‑TTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAg                                                    >  1:2319618/1‑93 (MQ=255)

                                       tGCATATAGCCCA‑TTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCa                                                  <  1:4020804/93‑1 (MQ=255)

                                       tGCATATAGCCCA‑TTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCa                                                  >  2:3860658/1‑93 (MQ=255)

                                       tGCATATAGCCCA‑TTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCa                                                  >  2:3780115/1‑93 (MQ=255)

                                       cgCATATAGCCCATTTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGc                                                   <  1:5205834/92‑1 (MQ=255)

                                         cATATAGCCCA‑TTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCAtc                                                >  2:5521854/1‑93 (MQ=255)

                                         cATATAGCCCA‑TTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCAtc                                                <  1:2459883/93‑1 (MQ=255)

                                          atatAGCCCA‑TTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCAtca                                               <  2:854068/93‑1 (MQ=255)

                                           tataGCCCA‑TTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCAtcag                                              >  2:916510/1‑93 (MQ=255)

                                           tataGCCCA‑TTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCAtcag                                              >  2:4361464/1‑93 (MQ=255)

                                           tataGCCCA‑TTTTTTTGCCGCACTCGTAACTGTCGCCGGTCAACAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCAtcag                                              >  2:3561048/1‑93 (MQ=255)

                                            ataGCCCA‑TTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCAtcagt                                             >  2:3912692/1‑93 (MQ=255)

                                            ataGCCCA‑TTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCAtcagt                                             >  2:1649519/1‑93 (MQ=255)

                                              aGCCCA‑TTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCAtcagtca                                           <  2:6459430/93‑1 (MQ=255)

                                               gCCCA‑TTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCAtcagtcag                                          >  1:4088559/1‑93 (MQ=255)

                                                cccA‑TTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGc                                         >  1:4536796/1‑93 (MQ=255)

                                                cccA‑TTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGc                                         <  1:1309336/93‑1 (MQ=255)

                                                cccA‑TTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGc                                         <  1:483170/93‑1 (MQ=255)

                                                 ccA‑TTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCt                                        >  2:2765199/1‑93 (MQ=255)

                                                 ccA‑TTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCt                                        >  2:2718627/1‑93 (MQ=255)

                                                 ccA‑TTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCt                                        >  2:5226731/1‑93 (MQ=255)

                                                  cA‑TTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCTg                                       <  1:5148937/93‑1 (MQ=255)

                                                  cA‑TTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCTg                                       <  1:6016834/93‑1 (MQ=255)

                                                   a‑TTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCTGa                                      >  2:6058078/1‑93 (MQ=255)

                                                   a‑TTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCTGa                                      >  2:861671/1‑93 (MQ=255)

                                                     tttttttGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCNGCAATAGCATCAGTCAGCTNaa                                     >  2:5391288/1‑93 (MQ=255)

                                                     tttttttGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCACTAGCATCAGTCAGCTGaa                                     >  2:2928957/1‑93 (MQ=255)

                                                     tttttttGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCTGaa                                     >  1:4641755/1‑93 (MQ=255)

                                                      ttttttGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCTGAAt                                    <  2:4197100/93‑1 (MQ=255)

                                                       tttttGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAATGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCTGAATa                                   >  1:1471953/1‑93 (MQ=255)

                                                       tttttGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCTGAATa                                   <  2:6519699/93‑1 (MQ=255)

                                                       tttttGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCTGAATa                                   <  2:1484512/93‑1 (MQ=255)

                                                        ttttGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATAAGTCAGCCGAATAc                                  >  1:1872194/1‑93 (MQ=255)

                                                         tttGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCTGAATACg                                 >  2:1052066/1‑93 (MQ=255)

                                                           tGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCTGAATACGTc                               <  2:2565086/93‑1 (MQ=255)

                                                            gCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCTGAATACGTcc                              >  2:3844185/1‑93 (MQ=255)

                                                               gCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCTGAATACGTCCCCa                           >  2:5008869/1‑93 (MQ=255)

                                                                  gTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCCTCAGTCAGCTGAATACGTCCACACGc                        >  1:749456/1‑93 (MQ=255)

                                                                  gTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCTGAATACGTCCCCACGc                        >  1:5526355/1‑93 (MQ=255)

                                                                  gTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCTGAATACGTCCCCACGc                        <  1:838367/93‑1 (MQ=255)

                                                                   tCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCTGAATACGTCCCCACGCa                       <  1:4903837/93‑1 (MQ=255)

                                                                    cGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCTGAATACGTCCCCACGCAc                      <  1:6628066/93‑1 (MQ=255)

                                                                     gTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCTGAATACGTCCCCACGCAcc                     >  1:4790960/1‑93 (MQ=255)

                                                                     gTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCTGAATACGTCCCCACGCAcc                     <  1:3839153/93‑1 (MQ=255)

                                                                        aCTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCTGAATACGTCCCCACGCACCAgg                  >  1:5114351/1‑93 (MQ=255)

                                                                        aCTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCTGAATACGTCCCCACGCACCAgg                  >  2:4323665/1‑93 (MQ=255)

                                                                         cTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCTGAATACGTCCCCACGCACCAGGc                 <  1:2503197/93‑1 (MQ=255)

                                                                         cTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCTGAATACGTCCCCACGCACCAGGc                 >  2:5159398/1‑93 (MQ=255)

                                                                          tGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCTGAATACGTCCCCACGCACCAGGCt                >  1:2550156/1‑93 (MQ=255)

                                                                           gTCGCCGGTCATCAGCGTTGCATCAGCGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCTGAATACGTCCCCACGCACCAGGCTg               <  1:5809151/93‑1 (MQ=255)

                                                                            tCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCTGAATACGTCCCCACGCACCAGGCTGa              <  2:1255755/93‑1 (MQ=255)

                                                                            tCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCTGAATACGTCCCCACGCACCAGGCTGa              <  1:3730789/93‑1 (MQ=255)

                                                                            tCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCTGAATACGTCCCCACGCACCAGGCTGa              <  2:3735525/93‑1 (MQ=255)

                                                                                cGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCTGAATACGTCCCCACGCACCAGGCTGAGTAc          <  1:2009314/93‑1 (MQ=255)

                                                                                cGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCTGAATACGTCCCCACGCACCAGGCTGAGTAc          <  1:634765/93‑1 (MQ=255)

                                                                                 ggTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCTGAATACGTCCCCACGCACCAGGCTGAGTACg         >  2:6280884/1‑93 (MQ=255)

                                                                                  gTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCTGAATACGTCCCCACGCACCAGGCTGAGTACGt        <  1:2894505/93‑1 (MQ=255)

                                                                                    catcaGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCTGAATACGTCCCCACGCACCAGGCTGAGTACGTTc      <  1:6006162/93‑1 (MQ=255)

                                                                                     atcaGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCTGAATACGTCCCCACGCACCAGGCTGAGTACGTTcc     >  2:3721837/1‑93 (MQ=255)

                                                                                     atcaGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCTGAATACGTCCCCACGCACCAGGCTGAGTACGTTcc     <  2:60789/93‑1 (MQ=255)

                                                                                     atcaGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCTGAATACGTCCCCACGCACCAGGCTGAGTACGTTcc     <  2:5052203/93‑1 (MQ=255)

                                                                                     atcaGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCTGAATACGTCCCCACGCACCAGGCTGAGTACGTTcc     <  1:4972182/93‑1 (MQ=255)

                                                                                      tcaGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCTGAATACGTCCCCACGCACCAGGCTGAGTACGTTCCa    >  2:1899490/1‑93 (MQ=255)

                                                                                      tcaGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCTGAATACGTCCCCACGCACCAGGCTGAGTACGTTCCa    <  1:2853443/93‑1 (MQ=255)

                                                                                        aGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCTGAATACGTCCCCACGCACCAGGCTGAGTACGTTCCAGt  <  2:5720165/93‑1 (MQ=255)

CCTTCTTTCAGGTTGCGTAGGCCATACTTCACAAACGCCTGCATATAGCCCA‑TTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCATTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCTGAATACGTCCCCATGCACCAGGCTGAGTACGTTCCAGT  >  NC_000913/2111499‑2111678

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

GCCCCTTCTTTCAGGTTGCGTAGGCCATACTTCACAAACGCCTGCATATAGCCCA‑TTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCATTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCTGAATACGTCCCCATGCACCAGGCTGAGTACGTTCCAGTTCC  >  NC_000913/2111496‑2111681

GCCCCTTCTTTCAGGTTGCGTAGGCCATACTTCACAAACGCCTGCATATAGCCCA‑TTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCG                                                                                              <  SRR4302536.3030275/94‑1 (MQ=60)

 CCCCTTCTTTCAGGTTGCGTAGGCCATACTTCACAAACGGCTGCATATAGCCCA‑TTTTTTTGCCGCAGTCGTTACTGTCGCCGGTCATCAGCGT                                                                                             >  SRR4302536.3025692/1‑94 (MQ=60)

 CCCCTTCTTTCAGGTTGCGTAGGCCATACTTCACAAACGCCTGCATATAGCCCA‑TTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGT                                                                                             >  SRR4302536.4146018/1‑94 (MQ=60)

   CCTTCTTTCAGGTTGCGTAGGCCATACTTCACAAACGCCTGCATATAGCCCA‑TTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTG                                                                                           >  SRR4302536.3106945/1‑94 (MQ=60)

   CCTTCTTTCAGGTTGCGTAGGCCATACTTCACAAACGCCTGCATATAGCCCA‑TTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTG                                                                                           <  SRR4302536.2504605/94‑1 (MQ=60)

   CCTTCTTTCAGGTTGCGTAGGCCATACTTCACAAACGCCTGCATATAGCCCA‑TTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTG                                                                                           <  SRR4302536.180249/94‑1 (MQ=60)

    CTTCTTTCAGGTTGCGTAGGCCATACTTCACAAACGCCTGCATATAGCCCA‑TTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGC                                                                                          <  SRR4302536.1297209/94‑1 (MQ=60)

    CTTCTTTCAGGTTGCGTAGGCCATACTTCACAAACGCCTGCATATAGCCCA‑TTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGC                                                                                          >  SRR4302536.844270/1‑94 (MQ=60)

    CTTCTTTCAGGTTGCGTAGGCCATACTTCACAAACGCCTGCATATAGCCCA‑TTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGC                                                                                          >  SRR4302536.4039983/1‑94 (MQ=60)

    CTTCTTTCAGGTTGCGTAGGCCATACTTCACAAACGCCTGCATATAGCCCA‑TTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGC                                                                                          >  SRR4302536.2173440/1‑94 (MQ=60)

     TTCTTTCAGGTTGCGTAGGCCATACTTCACAAACGCCTGCATATAGCCCA‑TTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCA                                                                                         >  SRR4302536.2739447/1‑94 (MQ=60)

     TTCTTTCAGGTTGCGTAGGCCATACTTCACAAACGCCTGCATATAGCCCA‑TTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCA                                                                                         >  SRR4302536.593666/1‑94 (MQ=60)

       CTTTCAGGTTGCGTAGGCCATACTTCACAAACGCCTGCATATAGCCCA‑TTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATC                                                                                       >  SRR4302536.316451/1‑94 (MQ=60)

        TTTCGGGTTGCGTAGGCCATACTTCACAAACGCCTGCATATAGCCCA‑TTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCA                                                                                      <  SRR4302536.1475375/94‑1 (MQ=60)

        TTTCAGGTTGCGTAGGCCATACTTCACAAACGCCTGCATATAGCCCA‑TTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCA                                                                                      <  SRR4302536.1621492/94‑1 (MQ=60)

           CAGGTTGCGTAGGCCATACTTCACAAACGCCTGCATATAGCCCA‑TTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACG                                                                                   <  SRR4302536.2885335/94‑1 (MQ=60)

           CAGGTTGCGTAGGCCATACTTCACAAACGCCTGCATATAGCCCA‑TTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACG                                                                                   <  SRR4302536.2769687/94‑1 (MQ=60)

              GTTGCGTAGGCCATACTTCACAAACGCCTGCATATAGCCCA‑TTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGAT                                                                                <  SRR4302536.5875076/94‑1 (MQ=60)

              GTTGCGTAGGCCATACTTCACAAACGCCTGCATATAGCCCA‑TTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGAT                                                                                >  SRR4302536.3058847/1‑94 (MQ=60)

              GTTGCGTAGGCCATACTTCACAAACGCCTGCATATAGCCCA‑TTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGAT                                                                                <  SRR4302536.4341731/94‑1 (MQ=60)

                  CGTAGGCCATACTTCACAACCGCCTGCATATAGCCCA‑TTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTT                                                                            <  SRR4302536.3681626/94‑1 (MQ=60)

                  CGTAGGCCATACTTCACAAACGCCTGCATATAGCCCA‑TTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTT                                                                            >  SRR4302536.927925/1‑94 (MQ=60)

                  CGTAGGCCATACTCCACAAACGCCTCCATATAGCCCA‑TTTTTTTGCCGCAGTCGTAACTGTCGCGGGTCATCAGCGTTGCATCAACGGATTGTT                                                                            <  SRR4302536.6872097/94‑1 (MQ=60)

                   GTAGGCCATACTTCACAAACGCCTGCATATAGCCCA‑TTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTT                                                                           <  SRR4302536.2762882/94‑1 (MQ=60)

                   GTAGGCCATACTTCACAAACGCCTGCATATAGCCCA‑TTTTTTTGCCGCAGTCGTAACTGTCACCGGTCATCAGCGTTGCATCAACGGATTGTTT                                                                           <  SRR4302536.5502684/94‑1 (MQ=60)

                    TAGGCCATACTTCACAAACGCCTGCATATAGCCCA‑TTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTT                                                                          >  SRR4302536.5412644/1‑94 (MQ=60)

                    TAGGCCATACTTCACAAACGCCTGCATATAGCCCA‑TTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTT                                                                          <  SRR4302536.487655/94‑1 (MQ=60)

                    TAGGCCATACTTCACAAACGCCTGCATATAGCCCA‑TTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTT                                                                          <  SRR4302536.6862122/94‑1 (MQ=60)

                    TAGGCCATACTTCACAAACGCCTGCATATAGCCCA‑TTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTT                                                                          >  SRR4302536.5811420/1‑94 (MQ=60)

                     AGGCCATACTTCACAAACGCCTGCATATAGCCCA‑TTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTT                                                                         <  SRR4302536.218880/94‑1 (MQ=60)

                     AGGCCATACTTCACAAACGCCTGCATATAGCCCA‑TTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTT                                                                         <  SRR4302536.618314/94‑1 (MQ=60)

                      GGCCATACTTCACAAACGCCTGCATATAGCCCA‑TTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTT                                                                        <  SRR4302536.1103367/94‑1 (MQ=60)

                       GCCATACTTCACAAACGCCTGCATATAGCCCA‑TTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTC                                                                       >  SRR4302536.47608/1‑94 (MQ=60)

                       GCCATACTTCACAAACGCCTGCATATAGCCCA‑TTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTC                                                                       <  SRR4302536.3302113/94‑1 (MQ=60)

                        CCATACTTCACAAACGCCTGCATATAGCCCA‑TTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCG                                                                      >  SRR4302536.4362215/1‑94 (MQ=60)

                         CATACTTCACAAACGCCTGCATGTAGCCCA‑TTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGC                                                                     >  SRR4302536.5890270/1‑94 (MQ=60)

                         CATACTTCACAAACGCCTGCATATAGCCCA‑TTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGC                                                                     >  SRR4302536.5944232/1‑94 (MQ=60)

                         CATACTTCACAAACGCCTGCATATAGCCCA‑TTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGC                                                                     >  SRR4302536.6241134/1‑94 (MQ=60)

                         CATACTTCACAAACGCCTGCATATAGCCCA‑TTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGC                                                                     >  SRR4302536.3692359/1‑94 (MQ=60)

                          ATACTTCACAAACGCCTGCATATAGCCCA‑TTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCC                                                                    >  SRR4302536.3471288/1‑94 (MQ=60)

                          ATACTTCACAAACGCCTGCATATAGCCCA‑TTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCC                                                                    <  SRR4302536.5233671/94‑1 (MQ=60)

                             CTTCACAAACGCCTGCATATAGCCCA‑TTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGC                                                                 <  SRR4302536.5096717/94‑1 (MQ=60)

                              TTCACAAACGCCTGCATATAGCCAA‑TTTTTTTGCAGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGAGTGTTTTTTCGCCAGCT                                                                <  SRR4302536.6660600/94‑1 (MQ=60)

                              TCCACAAACGCCTGCATATAGCCCA‑TTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCT                                                                <  SRR4302536.115054/94‑1 (MQ=60)

                               TCACAAACGCCTGCATATAGCCCA‑TTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTC                                                               <  SRR4302536.6278993/94‑1 (MQ=60)

                                CACAAACGCCTGCATATAGCCCA‑TTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCG                                                              >  SRR4302536.975476/1‑94 (MQ=60)

                                 ACAAACGCCTGCATATAGCCCA‑TTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGG                                                             <  SRR4302536.2249225/94‑1 (MQ=60)

                                 ACAAACGCCTGCATATAGCCCA‑TTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGG                                                             >  SRR4302536.3676833/1‑94 (MQ=60)

                                  CAAACGCCTGCATATAGCCCA‑TTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGC                                                            <  SRR4302536.4602191/94‑1 (MQ=60)

                                   AAACGCCTGCATATAGCCCA‑TTTTGTTGCCGCAGTGGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCA                                                           <  SRR4302536.3247355/94‑1 (MQ=60)

                                       GCCTGCATATAGCCCA‑TTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAG                                                       <  SRR4302536.4956013/94‑1 (MQ=60)

                                       GCCTGCATATAGCCCA‑TTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAG                                                       >  SRR4302536.2390010/1‑94 (MQ=60)

                                        CCTGCATATAGCCCA‑TTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGC                                                      >  SRR4302536.2505914/1‑94 (MQ=60)

                                          TGCATATAGCCCA‑TTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCAT                                                    <  SRR4302536.4140102/94‑1 (MQ=60)

                                          CGCATATAGCCCATTTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCA                                                     <  SRR4302536.5361010/94‑1 (MQ=60)

                                           GCATATTGCCCA‑TTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATC                                                   <  SRR4302536.1620027/94‑1 (MQ=60)

                                           GCATATAGCCCA‑TTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATC                                                   <  SRR4302536.5321791/94‑1 (MQ=60)

                                            CATATAGCCCA‑TTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCA                                                  <  SRR4302536.2534164/94‑1 (MQ=60)

                                              TATAGCCCA‑TTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGT                                                >  SRR4302536.1777221/1‑94 (MQ=60)

                                                TAGCCCA‑TTTTTTTTCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCCACGGATTGGTTTTTCGCCAGCTCGGCCATAACATCACTCA                                              >  SRR4302536.1820065/1‑94 (MQ=60)

                                                TAGCCCA‑TTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCA                                              >  SRR4302536.2767169/1‑94 (MQ=60)

                                                TAGCCCA‑TTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCA                                              <  SRR4302536.5766466/94‑1 (MQ=60)

                                                 AGCCCA‑TTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAG                                             >  SRR4302536.6709394/1‑94 (MQ=60)

                                                 AGCCCA‑TTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAG                                             >  SRR4302536.4209774/1‑94 (MQ=60)

                                                 AGCCCA‑TTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAG                                             <  SRR4302536.3944401/94‑1 (MQ=60)

                                                  GCCCA‑TTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGC                                            >  SRR4302536.4672833/1‑94 (MQ=60)

                                                  GCCCA‑TTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGC                                            >  SRR4302536.5008286/1‑94 (MQ=60)

                                                   CCCA‑TTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCT                                           <  SRR4302536.1348417/94‑1 (MQ=60)

                                                   CCCA‑TTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCT                                           <  SRR4302536.495727/94‑1 (MQ=60)

                                                     CA‑TTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCTGA                                         <  SRR4302536.6196223/94‑1 (MQ=60)

                                                     CA‑TTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCTGA                                         <  SRR4302536.5302575/94‑1 (MQ=60)

                                                      A‑TTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCTGAA                                        >  SRR4302536.4781273/1‑94 (MQ=60)

                                                         TTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAATGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCTGAATA                                      >  SRR4302536.1515487/1‑94 (MQ=60)

                                                          TTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCTGAATAC                                     >  SRR4302536.2963301/1‑94 (MQ=60)

                                                          TTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCTGAATAC                                     >  SRR4302536.5585480/1‑94 (MQ=60)

                                                          TTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATAAGTCAGCCGAATAC                                     >  SRR4302536.1928550/1‑94 (MQ=60)

                                                              TGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCTGAATACGTCC                                 >  SRR4302536.2532339/1‑94 (MQ=60)

                                                               GCCGCAGTCGTAACTGTCGGCGGTCATCAGCGTTGCATCTACGGATTGTTTTTTGGCCCGCTCGGCAGTAGCATCAGTCAGCTGgattcttccc                                >  SRR4302536.2590229/1‑84 (MQ=60)

                                                                CCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCTGAATACGTCCCC                               >  SRR4302536.2353419/1‑94 (MQ=60)

                                                                 CGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCTGAATACGTCCCCA                              >  SRR4302536.2229292/1‑94 (MQ=60)

                                                                    AGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCCTCAGTCAGCTGAATACGTCCACACGC                           >  SRR4302536.771472/1‑94 (MQ=60)

                                                                    AGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCTGAATACGTCCCCACGC                           >  SRR4302536.5691135/1‑94 (MQ=60)

                                                                    AGGCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCTGAATACGTCCCCACGC                           >  SRR4302536.3572926/1‑94 (MQ=60)

                                                                     GTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCTGAATACGTCCCCACGCA                          >  SRR4302536.5230280/1‑94 (MQ=60)

                                                                     GTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCTGAATACGTCCCCACGCA                          <  SRR4302536.863017/94‑1 (MQ=60)

                                                                      TCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCTGAATACGTCCCCACGCAC                         <  SRR4302536.5051281/94‑1 (MQ=60)

                                                                      TCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCTGAATACGTCCCCACGCAC                         <  SRR4302536.1945142/94‑1 (MQ=60)

                                                                       CGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCTGAATACGTCCCCACGCACC                        <  SRR4302536.6825210/94‑1 (MQ=60)

                                                                       CGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCTGAATACGTCCCCACGCACC                        >  SRR4302536.4935181/1‑94 (MQ=60)

                                                                        GTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCTGAATACGTCCCCACGCACCA                       <  SRR4302536.3953482/94‑1 (MQ=60)

                                                                        GTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCTGAATACGTCCCCACGCACCA                       >  SRR4302536.2557810/1‑94 (MQ=60)

                                                                        GTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCTGAATACGTCCCCACGCACCA                       >  SRR4302536.91870/1‑94 (MQ=60)

                                                                         TAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCTGAATACGTCCCCACGCACCAG                      >  SRR4302536.5866970/1‑94 (MQ=60)

                                                                          AACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCTGAATACGTCCCCACGCACCAGG                     >  SRR4302536.5267189/1‑94 (MQ=60)

                                                                            CTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCTGAATACGTCCCCACGCACCAGGCT                   >  SRR4302536.2626956/1‑94 (MQ=60)

                                                                            CTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCTGAATACGTCCCCACGCACCAGGCT                   <  SRR4302536.2578673/94‑1 (MQ=60)

                                                                             TGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGGCAGCTCGGCAATAGCATCAGTCAGCTGAATACGTCCCCACGCACCAGGCTG                  >  SRR4302536.5999738/1‑94 (MQ=60)

                                                                              GTCGCCGGTCATCAGCGTTGCATCAGCGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCTGAATACGTCCCCACGCACCAGGCTGA                 <  SRR4302536.5982179/94‑1 (MQ=60)

                                                                               TCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCTGAATACGTCCCCACGCACCAGGCTGAG                <  SRR4302536.3842308/94‑1 (MQ=60)

                                                                                 GCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCTGAATACGTCCCCACGCACCAGGCTGAGTA              >  SRR4302536.2607709/1‑94 (MQ=60)

                                                                                 GCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCTGAATACGTCCCCACGCACCAGGCTGAGTA              >  SRR4302536.1320484/1‑94 (MQ=60)

                                                                                  CCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCTGAATACGTCCCCACGCACCAGGCTGAGTAC             <  SRR4302536.2396781/94‑1 (MQ=60)

                                                                                  CCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCTGAATACGTCCCCACGCACCAGGCTGAGTAC             <  SRR4302536.5297986/94‑1 (MQ=60)

                                                                                   CGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCTGAATACGTCCCCACGCACCAGGCTGAGTACG            <  SRR4302536.2069785/94‑1 (MQ=60)

                                                                                   CGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCTGAATACGTCCCCACGCACCAGGCTGAGTACG            <  SRR4302536.653530/94‑1 (MQ=60)

                                                                                     GTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCTGAATACGTCCCCACGCACCAGGCTGAGTACGTT          <  SRR4302536.2979862/94‑1 (MQ=60)

                                                                                       CATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCTGAATACGTCCCCACGCACCAGGCTGAGTACGTTCC        <  SRR4302536.6185222/94‑1 (MQ=60)

                                                                                        ATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCTGAATACGTCCCCACGCACCAGGCTGAGTACGTTCCA       <  SRR4302536.1885499/94‑1 (MQ=60)

                                                                                        ATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCTGAATACGTCCCCACGCACCAGGCTGAGTACGTTCCA       <  SRR4302536.5121523/94‑1 (MQ=60)

                                                                                        ATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCTGAATACGTCCCCACGCACCAGGCTGAGTACGTTCCA       <  SRR4302536.4159562/94‑1 (MQ=60)

                                                                                        ATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCTGAATACGTCCCCACGCACCAGGCTGAGTAAGTTCCG       >  SRR4302536.739364/1‑94 (MQ=60)

                                                                                         TCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCTGAATACGTCCCCACGCACCAGGCTGAGTACGTTCCAG      <  SRR4302536.2937795/94‑1 (MQ=60)

                                                                                           AGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCTGAATACGTCCCCACGCACCAGGCTGAGTACGTTCCAGTT    >  SRR4302536.2506312/1‑94 (MQ=60)

                                                                                            GCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCTGAATACGTCCCCACGCACCAGGCTGAGTACGTTCCAGTTC   >  SRR4302536.6428419/1‑94 (MQ=60)

                                                                                             CGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCTGAATACGTCCCCACGCACCAGGCTGAGTACGTTCCAGTTCC  <  SRR4302536.4084030/94‑1 (MQ=60)

                                                                                             CGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCTGAATACGTCCCCACGCACCAGGCTGAGTACGTTCCAGTTCC  >  SRR4302536.2458593/1‑94 (MQ=60)

GCCCCTTCTTTCAGGTTGCGTAGGCCATACTTCACAAACGCCTGCATATAGCCCA‑TTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCATTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCTGAATACGTCCCCATGCACCAGGCTGAGTACGTTCCAGTTCC  >  NC_000913/2111496‑2111681

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`