Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1475	266.7	13469680	98.2%	13227225	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,195,623	T→C	intergenic (+1270/‑2676)	metG → / → yehI	methionine tRNA synthetase/putative regulator

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,195,623	0	T	C	100.0%	817.8 / NA	249	intergenic (+1270/‑2676)	metG/yehI	methionine tRNA synthetase/putative regulator
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (136/113); total (136/113)

Only 100 of 254 total aligned reads displayed.

ATGAGCACATTCTTGCCTCATTAGAAAAATATCACGAACCATATGCCATTTTTGATGATTACTATTGTGGTGCGATATGGTCAGCCACCGTATTACAGGAGCAAGGTGTTGCAGCCCTGCCCCGATTTGCTCCCTATGCCGCAAGTGACTACTGCGCCGATGTGTTGCGTCATATCAATC  >  NC_000913/2195533‑2195712

atgaGCACATTCTTGCCTCATTAGAAAAATATCACGAACCATATGCCATTTTTGATGATTACTATTGTGGTGCGATATGGTCAGCCACCGCAt                                                                                         <  2:2421574/93‑1 (MQ=255)

atgaGCACATTCTTGCCTCATTAGAAAAATATCACGAACCATATGCCATTTTTGATGATTACTATTGTGGTGCGATATGGTCAGCCACCGCAt                                                                                         <  2:2849812/93‑1 (MQ=255)

 tgaGCACATTCTTGCCTCATTAGAAAAATATCACGAACCATATGCCATTTTTGATGATTACTATTGTGGTGCGATATGGTCAGCCACCGCAtt                                                                                        >  1:5458339/1‑93 (MQ=255)

 tgaGCACATTCTTGCCTCATTAGAAAAATATCACGAACCATATGCCATTTTTGATGATTACTATTGTGGTGCGATATGGTCAGCCACCGCAtt                                                                                        <  1:3193991/93‑1 (MQ=255)

 tgaGCACATTCTTGCCTCATTAGAAAAATATCACGAACCATATGCCATTTTTGATGATTACTATTGTGGTGCGATATGGTCAGCCACCGCAtt                                                                                        <  2:3007963/93‑1 (MQ=255)

  gaGCACATTCTTGCCTCATTAGAAAAATATCACGAACCATATGCCATTTTTGATGATTACTATTGTGGTGCGATATGGTCAGCCACCGCATTa                                                                                       >  1:1180766/1‑93 (MQ=255)

   aGCACATTCTTGCCTCATTAGAAAAATATCACGAACCATATGCCATTTTTGATGATTACTATTGTGGTGCGATATGGTCAGCCACCGCATTAc                                                                                      <  1:892114/93‑1 (MQ=255)

    gCACATTCTTGCCTCATTAGAAAAATATCACGAACCATATGCCATTTTTGATGATTACTATTGTGGTGCGATATGGTCAGCCACCGCATTACa                                                                                     <  2:3709285/93‑1 (MQ=255)

      acaTTCTTGCCTCATTAGAAAAATATCACGAACCATATGCCATTTTTGATGATTACTATTGTGGTGCGATATGGTCAGCCACCGCATTACAgg                                                                                   <  1:5029229/93‑1 (MQ=255)

      acaTTCTTGCCTCATTAGAAAAATATCACGAACCATATGCCATTTTTGATGATTACTATTGTGGTGCGATATGGTCAGCCACCGCATTACAgg                                                                                   >  1:6644476/1‑93 (MQ=255)

      acaTTCTTGCCTCATTAGAAAAATATCACGAACCATATGCCATTTTTGATGATTACTATTGTGGTGCGATATGGTCAGCCACCGCATTACAgg                                                                                   >  2:1105869/1‑93 (MQ=255)

       caTTCTTGCCTCATTAGAAAAATATCACGAACCATATGCCATTTTTGATGATTACTATTGTGGTGCGATATGGTCAGCCACCGCATTACAGGa                                                                                  <  2:2482937/93‑1 (MQ=255)

       caTTCTTGCCTCATTAGAAAAATATCACGAACCATATGCCATTTTTGATGATTACTATTGTGGTGCGATATGGTCAGCCACCGCATTACAGGa                                                                                  <  1:1302916/93‑1 (MQ=255)

        aTTCTTGCCTCATTAGAAAAATATCACGAACCATATGCCATTTTTGATGATTACTATTGTGGTGCGATATGGTCAGCCACCGCATTACAGGAg                                                                                 >  1:4727356/1‑93 (MQ=255)

        aTTCTTGCCTCATTAGAAAAATATCACGAACCATATGCCATTTTTGATGATTACTATTGTGGTGCGATATGGTCAGCCACCGCATTACAGGAg                                                                                 >  1:4533472/1‑93 (MQ=255)

        aTTCTTGCCTCATTAGAAAAATATCACGAACCATATGCCATTTTTGATGATTACTATTGTGGTGCGATATGGTCAGCCACCGCATTACAGGAg                                                                                 >  1:4221812/1‑93 (MQ=255)

         ttCTTGCCTCATTAGAAAAATATCACGAACCATATGCCATTTTTGATGATTACTATTGTGGTGCGATATGGTCAGCCACCGCATTACAGGAGc                                                                                >  2:2000315/1‑93 (MQ=255)

         ttCTTGCCTCATTAGAAAAATATCACGAACCATATGCCATTTTTGATGATTACTATTGTGGTGCGATATGGTCAGCCACCGCATTACAGGAGc                                                                                >  1:1604990/1‑93 (MQ=255)

         ttCTTGCCTCATTAGAAAAATATCACGAACCATATGCCATTTTTGATGATTACTATTGTGGTGCGATATGGTCAGCCACCGCATTACAGGAGc                                                                                >  1:1896898/1‑93 (MQ=255)

          tCTTGCCTCATTAGAAAAATATCACGAACCATATGCCATTTTTGATGATTACTATTGTGGTGCGATATGGTCAGCCACCGCATTACAGGAGCa                                                                               <  1:1932315/93‑1 (MQ=255)

           cTTGCCTCATTAGAAAAATATCACGAACCATATGCCATTTTTGATGATTACTATTGTGGTGCGATATGGTCAGCCACCGCATTACAGGAGCaa                                                                              <  2:2622848/93‑1 (MQ=255)

           cTTGCCTCATTAGAAAAATATCACGAACCATATGCCATTTTTGATGATTACTATTGTGGTGCGATATGGTCAGCCACCGCATTACAGGAGCaa                                                                              <  2:5204351/93‑1 (MQ=255)

             tGCCTCATTAGAAAAATATCACGAACCATATGCCATTTTTGATGATTACTATTGTGGTGCGATATGGTCAGCCACCGCATTACAGGAGCAAgg                                                                            >  1:5629818/1‑93 (MQ=255)

             tGCCTCATTAGAAAAATATCACGAACCATATGCCATTTTTGATGATTACTATTGTGGTGCGATATGGTCAGCCACCGCATTACAGGAGCAAgg                                                                            <  1:4419607/93‑1 (MQ=255)

              gCCTCATTAGAAAAATATCACGAACCATATGCCATTTTTGATGATTACTATTGTTGTGCGCTATGGTCAGCCACCGCTTTACACGAGCAAgtg                                                                           >  1:3514077/1‑91 (MQ=255)

              gCCTCATTAGAAAAATATCACGAACCATATGCCATTTTTGATGATTACTATTGTGGTGCGATATGGTCAGCCACCGCATTACAGGAGCAAGgt                                                                           <  2:6626021/93‑1 (MQ=255)

              gCCTCATTAGAAAAATATCACGAACCATATGCCATTTTTGATGATTACTATTGTGGTGCGATATGGTCAGCCACCGCATTACAGGAGCAAGgt                                                                           >  1:748730/1‑93 (MQ=255)

                cTCATTAGAAAAATATCACGAACCATATGCCATTTTTGATGATTACTATTGTGGTGCGATATGGTCAGCCACCGCATTACAGGAGCAAGgtgt                                                                         <  1:3075282/93‑1 (MQ=255)

                cTCATTAGAAAAATATCACGAACCATATGCCATTTTTGATGATTACTATTGTGGTGCGATATGGTCAGCCACCGCATTACAGGAGCAAGgtgt                                                                         >  2:1813808/1‑93 (MQ=255)

                cTCATTAGAAAAATATCACGAACCATATGCCATTTTTGATGATTACTATTGTGGTGCGATATGGTCAGCCACCGCATTACAGGAGCAAGgtgt                                                                         <  1:5893607/93‑1 (MQ=255)

                cTCATTAGAAAAATATCACGAACCATATGCCATTTTTGATGATTACTATTGTGGTGCGATATGGTCAGCCACCGCATTACAGGAGCAAGgtgt                                                                         >  2:4716513/1‑93 (MQ=255)

                cTCATTAGAAAAATATCACGAACCATATGCCATTTTTGATAATTACTATTGTGGTGCGATATGGTCAGCCACCGCATTACAGGAGCAAGgtgt                                                                         >  2:1331067/1‑93 (MQ=255)

                 tCATTAGAAAAATATCACGAACCATATGCCATTTTTGATGATTACTATTGTGGTGCGATATGGTCAGCCACCGCATTACAGGAGCAAGGTGtt                                                                        >  2:5879107/1‑93 (MQ=255)

                 tCATTAGAAAAATATCACGAACCATATGCCATTTTTGATGATTACTATTGTGGTGCGATATGGTCAGCCACCGCATTACAGGAGCAAGGTGtt                                                                        >  2:2792058/1‑93 (MQ=255)

                  cATTAGAAAAATATCACGAACCATATGCCATTTTTGATGATTACTATTGTGGTGCGATATGGTCAGCCACCGCATTACAGGAGCAAGGTGTTg                                                                       <  1:4674527/93‑1 (MQ=255)

                   aTTAGAAAAATATCACGAACCATATGCCATTTTTGATGATTACTATTGTGGTGCGATATGGTCAGCCACCGCATTACAGGAGCAAGGTGTTGc                                                                      >  1:6383275/1‑93 (MQ=255)

                    ttAGAAAAATATCACGAACCATATGCCATTTTTGATGATTACTATTGTGGTGCGATATGGTCAGCCACCGCATTACAGGAGCAAGGTGTTGCa                                                                     <  2:329068/93‑1 (MQ=255)

                    ttAGAAAAATATCACGAACCATATGCCATTTTTGATGATTACTATTGTGGTGCGATATGGTCAGCCACCGCATTACAGGAGCAAGGTGTTGCa                                                                     >  2:3109281/1‑93 (MQ=255)

                     tAGAAAAATATCACGAACCATATGCCATTTTTGATGATTACTATTGTGGTGCGATATGGTCAGCCACCGCATTACAGGAGCAAGGTGTTGCAg                                                                    >  2:5071081/1‑93 (MQ=255)

                      aGAAAAATATCACGAACCATATGCCATTTTTGATGATTACTATTGTGGTGCGATATGGTCAGCCACCGCATTACAGGAGCAAGGTGTTGCAGc                                                                   >  2:4614588/1‑93 (MQ=255)

                       gAAAAATATCACGAACCATATGCCATTTTTGATGATTACTATTGTGGTGCGATATGGTCAGCCACCGCATTACAGGAGCAAGGTGTTGCAGcc                                                                  >  1:2532600/1‑93 (MQ=255)

                        aaaaaTATCACGAACCATATGCCATTTTTGATGATTACTATTGTGGTGCGATATGGTCAGCCACCGCATTACAGGAGCAAGGTGTTGCAGccc                                                                 <  1:302007/93‑1 (MQ=255)

                        aaaaaTATCACGAACCATATGCCATTTTTGATGATTACTATTGTGGTGCGATATGGTCAGCCACCGCATTACAGGAGCAAGGTGTTGCAGccc                                                                 <  2:2201070/93‑1 (MQ=255)

                        aaaaaTATCACGAACCATATGCCATTTTTGATGATTACTATTGTGGTGCGATATGGTCAGCCACCGCATTACAGGAGCAAGGTGTTGCAGccc                                                                 <  1:5479257/93‑1 (MQ=255)

                             tatCACGAACCATATGCCATTTTTGATGATTACTATTGTGGTGCGATATGGTCAGCCACCGCATTACAGGAGCAAGGTGTTGCAGCCCTGctc                                                            <  1:6413704/93‑3 (MQ=255)

                               tCACGAACCATATGCCATTTTTGATGATTACTATTGTGGTGCGATATGGTCAGCCACCGCATTACAGGAGCAAGGTGTTGCAGCCCTGCCCCg                                                          <  1:3297616/93‑1 (MQ=255)

                                 aCGAACCATATGCCATTTTTGATGATTACTATTGTGGTGCGATATGGTCAGCCACCGCATTACAGGAGCAAGGTGTTGCAGCCCTGCCCCGAt                                                        >  2:5978775/1‑93 (MQ=255)

                                 aCGAACCATATGCCATTTTTGATGATTACTATTGTGGTGCGATATGGTCAGCCACCGCATTACAGGAGCAAGGTGTTGCAGCCCTGCCCCGAt                                                        >  2:4994601/1‑93 (MQ=255)

                                     aCCATATGCCATTTTTGATGATTACTATTGTGGTGCGATATGGTCAGCCACCGCATTACAGGAGCAAGGTGTTGCAGCCCTGCCCCGATTTGc                                                    >  2:3218087/1‑93 (MQ=255)

                                      ccATATGCCATTTTTGATGATTACTATTGTGGTGCGATATGGTCAGCCACCGCATTACAGGAGCAAGGTGTTGCAGCCCTGCCCCGATTTGCt                                                   <  2:3971354/93‑1 (MQ=255)

                                      ccATATGCCATTTTTGATGATTACTATTGTGGTGCGATATGGTCAGCCACCGCATTACAGGAGCAAGGTGTTGCAGCCCTGCCCCGATTTGCt                                                   <  1:5556560/93‑1 (MQ=255)

                                       cATATGCCATTTTTGATGATTACTATTGTGGTGCGATATGGTCAGCCACCGCATTACAGGAGCAAGGTGTTGCAGCCCTGCCCCGATTTGCTc                                                  >  2:4374418/1‑93 (MQ=255)

                                        atatGCCATTTTTGATGATTACTATTGTGGTGCGATATGGTCAGCCACCGCATTACAGGAGCAAGGTGTTGCAGCCCTGCCCCGATTTGCTcc                                                 >  2:3682962/1‑93 (MQ=255)

                                          atGCCATTTTTGATGATTACTATTGTGGTGCGATATGGTCAGCCACCGCATTACAGGAGCAAGGTGTTGCAGCCCTGCCCCGATTTGCTCCCt                                               >  2:5424727/1‑93 (MQ=255)

                                          atGCCATTTTTGATGATTACTATTGTGGTGCGATATGGTCAGCCACCGCATTACAGGAGCAAGGTGTTGCAGCCCTGCCCCGATTTGCTCCCt                                               <  1:3644985/93‑1 (MQ=255)

                                           tGCCATTTTTGATGATTACTATTGTGGTGCGATATGGTCAGCCACCGCATTACAGGAGCAAGGTGTTGCAGCCCTGCCCCGATTTGCTCCCTa                                              <  2:1858203/93‑1 (MQ=255)

                                           tGCCATTTTTGATGATTACTATTGTGGTGCGATATGGTCAGCCACCGCATTACAGGAGCAAGGTGTTGCAGCCCTGCCCCGATTTGCTCCCTa                                              >  1:3998000/1‑93 (MQ=255)

                                            gCCATTTTTGATGATTACTATTGTGGTGCGATATGGTCAGCCACCGCATTACAGGAGCAAGGTGTTGCAGCCCTGCCCCGATTTGCTCCCTAt                                             <  1:3267897/93‑1 (MQ=255)

                                            gCCATTTTTGATGATTACTATTGTGGTGCGATATGGTCAGCCACCGCATTACAGGAGCAAGGTGTTGCAGCCCTGCCCCGATTTGCTCCCTAt                                             <  2:4581822/93‑1 (MQ=255)

                                                  tttGATGATTACTATTGTGGTGCGATATGGTCAGCCACCGCATTACAGGAGCAAGGTGTTGCAGCCCTGCCCCGATTTGCTCCCTATGCCGCa                                       >  2:6029968/1‑93 (MQ=255)

                                                    tgatgaTTACTATTGTGGTGCGATATGGTCAGCCACCGCATTACAGGAGCAAGGTGTTGCAGCCCTGCCCCGATTTGCTCCCTATGCCGCAAg                                     <  1:1806440/93‑1 (MQ=255)

                                                    tgatgaTTACTATTGTGGTGCGATATGGTCAGCCACCGCATTACAGGAGCAAGGTGTTGCAGCCCTGCCCCGATTTGCTCCCTATGCCGCAAg                                     >  1:2737405/1‑93 (MQ=255)

                                                    tgatgaTTACTATTGTGGTGCGATATGGTCAGCCACCGCATTACAGGAGCAAGGTGTTGCAGCCCTGCCCCGATTTGCTCCCTATGCCGCAAg                                     >  1:1555710/1‑93 (MQ=255)

                                                     gatgatTACTATTGTGGTGCGATATGGTCAGCCACCGCATTACAGGAGCAAGGTGTTGCAGCCCTGCCCCGATTTGCTCCCTATGCCGCAAGt                                    >  1:408025/1‑93 (MQ=255)

                                                       tgatTACTATTGTTGTGCGATATGGTCAGCCACCGCATTACAGGAGCAAGGAGTTGCAGCCCTGCCCCGATTTGCTCCCTATGCCGCAAGTGa                                  >  2:6051621/1‑93 (MQ=255)

                                                        gatTACTATTGTGGTGCGATATGGTCAGCCACCGCATTACAGGAGCAAGGTGTTGCAGCCCTGCCCCGATTTGCTCCCTATGCCGCAAGTGac                                 >  1:1045715/1‑93 (MQ=255)

                                                        gatTACTATTGTGGTGCGATATGGTCAGCCACCGCATTACAGGAGCAAGGTGTTGCAGCCCTGCCCCGATTTGCTCCCTATGCCGCAAGTGac                                 >  1:2929128/1‑93 (MQ=255)

                                                        gatTACTATTGTGGTGCGATATGGTCAGCCACCGCATTACAGGAGCAAGGTGTTGCAGCCCTGCCCCGATTTGCTCCCTATGCCGCAAGTGac                                 >  1:4063712/1‑93 (MQ=255)

                                                        gatTACTATTGTGGTGCGATATGGTCAGCCACCGCATTACAGGAGCAAGGTGTTGCAGCCCTGCCCCGATTTGCTCCCTATGCCGCAAGTAac                                 <  1:5213444/93‑1 (MQ=255)

                                                          ttccTATTGTGGTGCGATATGGTCAGCCACCGCATTACAGGAGCAAGGTGTTGCAGCCCTGCCCCGATTTGCTCCCTATGCCGCAAGTGacta                               <  2:1418387/90‑1 (MQ=255)

                                                          ttACTATTGTGGTGCGATATGGTCAGCCACCGCATTACAGGAGCAAGGTGTTGCAGCCCTGCCCCGATTTGCTCCCTATGCCGCAAGTGacta                               >  2:6683895/1‑93 (MQ=255)

                                                          ttACTATTGTGGTGCGATATGGTCAGCCACCGCATTACAGGAGCAAGGTGTTGCAGCCCTGCCCCGATTTGCTCCCTATGCCGCAAGTGacta                               >  2:4734124/1‑93 (MQ=255)

                                                           tACTATTGTGGTGCGATATGGTCAGCCACCGCATTACAGGAGCAAGGTGTTGCAGCCCTGCCCCGATTTGCTCCCTATGCCGCAAGTGactac                              <  2:6200955/93‑1 (MQ=255)

                                                           tACTATTGTGGTGCGATATGGTCAGCCACCGCATTACAGGAGCAAGGTGTTGCAGCCCTGCCCCGATTTGCTCCCTATGCCGCAAGTGactac                              <  1:3767135/93‑1 (MQ=255)

                                                              tATTGTGGTGCGATATGGTCAGCCACCGCATTACAGGAGCAAGGTGTTGCAGCCCTGCCCCGATTTGCTCCCTATGCCGCAAGTGACTACTgc                           >  1:2171080/1‑93 (MQ=255)

                                                               aTTGTGGTGCGATATGGTCAGCCACCGCATTACAGGAGCAAGGTGTTGCAGCCCTGCCCCGATTTGCTCCCTATGCCGCAAGTGACTACTgcg                          >  1:609161/1‑93 (MQ=255)

                                                               aTTGTGGTGCGATATGGTCAGCCACCGCATTACAGGAGCAAGGTGTTGCAGCCCTGCCCCGATTTGCTCCCTATGCCGCAAGTGACTACTgcg                          >  2:5547128/1‑93 (MQ=255)

                                                                ttGTGGTGCGATATGGTCAGCCACCGCATTACAGGAGCAAGGTGTTGCAGCCCTGCCCCGATTTGCTCCCTATGCCGCAAGTGACTACTgcgc                         <  2:4304635/93‑1 (MQ=255)

                                                                  gtggtgCGATATGGTCAGCCACCGCATTACAGGAGCAAGGTGTTGCAGCCCTGCCCCGATTTGCTCCCTATGCCGCAAGTGACTACTGCGCCg                       >  2:694897/1‑93 (MQ=255)

                                                                      tgCGATATGGTCAGCCACCGCATTACAGGAGCAAGGTGTTGCAGCCCTGCCCCGATTTGCTCCCTATGCCGCAAGTGACTACTGCGCCGAtgt                   <  2:5169941/93‑1 (MQ=255)

                                                                        cGATATGGTCAGCCACCGCATTACAGGAGCAAGGTGTTGCACGCCTGCCCCGATTTGCTCCCTATGCCGCAAGTGACTACTGCGCCGATgtgt                 <  2:801805/93‑1 (MQ=255)

                                                                         gATATGGTCAGCCACCGCATTACAGGAGCAAGGTGTTGCAGCCCTGCCCCGATTTGCTCCCTATGCCGCAAGTGACTACTGCGCCGATGTGtt                <  2:3408894/93‑1 (MQ=255)

                                                                         gATATGGTCAGCCACCGCATTACAGGAGCAAGGTGTTGCAGCCCTGCCCCGATTTGCTCCCTATGCCGCAAGTGACTACTGCGCCGATGTGtt                >  2:2125726/1‑93 (MQ=255)

                                                                          atatGGTCAGCCACCGCATTACAGGAGCAAGGTGTTGCAGCCCTGCCCCGATTTGCTCCCTATGCCGCAAGTGACTACTGCGCCGATGTGTTg               >  2:2372622/1‑93 (MQ=255)

                                                                           tatGGTCAGCCACCGCATTACAGGAGCAAGGTGTTGCAGCCCTGCCCCGATTTGCTCCCTATGCCGCAAGTGACTACTGCGCCGATGTGTTGc              <  2:6503431/93‑1 (MQ=255)

                                                                           tatGGTCAGCCACCGCATTACAGGAGCAAGGTGTTGCAGCCCTGCCCCGATTTGCTCCCTATGCCGCAAGTGACTACTGCGCCGATGTGTTGc              <  2:5825859/93‑1 (MQ=255)

                                                                             tGGTCAGCCACCGCATTACAGGAGCAAGGTGTTGCAGCCCTGCCCCGATTTGCTCCCTATGCCGCAAGTGACTACTGCGCCGATGTGTTGCGt            >  1:6030470/1‑93 (MQ=255)

                                                                              ggTCAGCCACCGCATTACAGGAGCAAGGTGTTGCAGCCCTGCCCCGATTTGCTCCCTATGCCGCAAGTGACTACTGCGCCGATGTGTTGCGTc           >  2:5399389/1‑93 (MQ=255)

                                                                              ggTCAGCCACCGCATTACAGGAGCAAGGTGTTGCAGCCCTGCCCCGATTTGCTCCCTATGCCGCAAGTGACTACTGCGCCGATGTGTTGCGTc           <  2:4651557/93‑1 (MQ=255)

                                                                               gTCAGCCACCGCATTACAGGAGCAAGGTGTTGCAGCCCTGCCCCGATTTGCTCCCTATGCCGCAAGTGACTACTGCGCCGATGTGTTGCGTCa          >  1:2099573/1‑93 (MQ=255)

                                                                                  aGCCACCGCATTACAGGAGCAAGGTGTTGCAGCCCTGCCCCGATTTGCTCCCTATGCCGCAAGTGACTACTGCGCCGATGTGTTGCGTCatat       >  1:6516661/1‑93 (MQ=255)

                                                                                   gCCACCGCATTACAGGAGCAAGGTGTTGCAGCCCTGCCCCGATTTGCTCCCTATGCCGCAAGTGACTACTGCGCCGATGTGTTGCGTCATatc      >  2:5093212/1‑93 (MQ=255)

                                                                                   gCCACCGCATTACAGGAGCAAGGTGTTGCAGCCCTGCCCCGATTTGCTCCCTATGCCGCAAGTGACTACTGCGCCGATGTGTTGCGTCATatc      >  1:238576/1‑93 (MQ=255)

                                                                                     cACCGCATTACAGGAGCAAGGTGTTGCAGCCCTGCCCCGATTTGCTCCCTATGCCGCAAGTGACTACTGCGCCGATGTGTTGCGTCATatcaa    <  2:1567520/93‑1 (MQ=255)

                                                                                     cACCGCATTACAGGAGCAAGGTGTTGCAGCCCTGCCCCGATTTGCTCCCTATGCCGCAAGTGACTACTGCGCCGATGTGTTGCGTCATatcaa    >  2:3763964/1‑93 (MQ=255)

                                                                                      cccGCATTACAGGAGCAAGGTGTTGCAGCCCTGCCCCGATTTGCTCCCTATGCCGCAAGTGACTACTGCGCCGATGTGTTGCGTCATatcaat   <  2:121412/92‑1 (MQ=255)

                                                                                      aCCGCATTACAGGAGCAAGGTGTTGCAGCCCTGCCCCGATTTGCTCCCTATGCCGCAAGTGACTACTGCGCCGATGTGTTGCGTCATatcaat   >  1:3424835/1‑93 (MQ=255)

                                                                                      aCCGCATTACAGGAGCAAGGTGTTGCAGCCCTGCCCCGATTTGCTCCCTATGCCGCAAGTGACTACTGCGCCGATGTGTTGCGTCATatcaat   >  2:1013830/1‑93 (MQ=255)

                                                                                      aCCGCATTACAGGAGCAAGGTGTTGCAGCCCTGCCCCGATTTGCTCCCTATGCCGCAAGTGACTACTGCGCCGATGTGTTGCGTCATatcaat   <  1:3400519/93‑1 (MQ=255)

                                                                                      aCCGCATTACAGGAGCAAGGTGTTGCAGCCCTGCCCCGATTTGCTCCCTATGCCGCAAGTGACTACTGCGCCGATGTGTTGCGTCATatcaat   >  2:4976685/1‑93 (MQ=255)

ATGAGCACATTCTTGCCTCATTAGAAAAATATCACGAACCATATGCCATTTTTGATGATTACTATTGTGGTGCGATATGGTCAGCCACCGTATTACAGGAGCAAGGTGTTGCAGCCCTGCCCCGATTTGCTCCCTATGCCGCAAGTGACTACTGCGCCGATGTGTTGCGTCATATCAATC  >  NC_000913/2195533‑2195712

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CTGATGAGCACATTCTTGCCTCATTAGAAAAATATCACGAACCATATGCCATTTTTGATGATTACTATTGTGGTGCGATATGGTCAGCCACCGTATTACAGGAGCAAGGTGTTGCAGCCCTGCCCCGATTTGCTCCCTATGCCGCAAGTGACTACTGCGCCGATGTGTTGCGTCATATCAATCATCC  >  NC_000913/2195530‑2195716

CTGATGAGCACATTCTTGCCTCATTAGAAAAATATCACGAACCATATGCCATTTTTGATGATTACTATTGTGGTGCGATATGGTCAGCCACCGC                                                                                               <  SRR4302536.5771889/94‑1 (MQ=60)

  GATGAGCACATTCTTGCCTCATTAGAAAAATATCACGAACCATATGCCATTTTTGATGATTACTATTGTGGTGCGATATGGTCAGCCACCGCAT                                                                                             <  SRR4302536.2542480/94‑1 (MQ=60)

  GATGAGCACATTCTTGCCTCATTAGAAAAATATCACGAACCATATGCCATTTTTGATGATTACTATTGTGGTGCGATATGGTCAGCCACCGCAT                                                                                             >  SRR4302536.3936903/1‑94 (MQ=60)

   ATGAGCACATTCTTGCCTCATTAGAAAAATATCACGAACCATATGCCATTTTTGATGATTACTATTGTGGTGCGATATGGTCAGCCACCGCATT                                                                                            >  SRR4302536.5621536/1‑94 (MQ=60)

   ATGAGCACATTCTTGCCTCATTAGAAAAATATCACGAACCATATGCCATTTTTGATGATTACTATTGTGGTGCGATATGGTCAGCCACCGCATT                                                                                            <  SRR4302536.1601847/94‑1 (MQ=60)

    TGAGCACATTCTTGCCTCATTAGAAAAATATCACGAACCATATGCCATTTTTGATGATTACTATTGTGGTGCGATATGGTCAGCCACCGCATTA                                                                                           >  SRR4302536.1216310/1‑94 (MQ=60)

    TGAGCACATTCTTGCCTCATTAGAAAAATATCACGAACCATATGCCATTTTTGATGATTACTATTGTGGTGCGATATGGTCAGCCACCGCATTA                                                                                           <  SRR4302536.3287625/94‑1 (MQ=60)

    TGAGCACATTCTTGCCTCATTAGAAAAATATCACGAACCATATGCCATTTTTGATGATTACTATTGTGGTGCGATATGGTCAGCCACCGCATTA                                                                                           <  SRR4302536.5316056/94‑1 (MQ=60)

      AGCACATTCTTGCCTCATTAGAAAAATATCACGAACCATATGCCATTTTTGATGATTACTATTGTGGTGCGATATGGTCAGCCACCGCATTACA                                                                                         <  SRR4302536.2821252/94‑1 (MQ=60)

      AGCACATTCTTGCCTCATTAGAAAAATATCACGAACCATATGCCATTTTTGATGATTACTATTGTGGTGCGATATGGTCAGCCACCGCATTACA                                                                                         <  SRR4302536.918395/94‑1 (MQ=60)

       GCACATTCTTGCCTCATTAGAAAAATATCACGAACCATATGCCATTTTTGATGATTACTATTGTGGTGCGATATGGTCAGCCACCGCATTACAG                                                                                        <  SRR4302536.2338615/94‑1 (MQ=60)

        CACATTCTTGCCTCATTAGAAAAATATCACGAACCATATGCCATTTTTGATGATTACTATTGTGGTGCGATATGGTCAGCCACCGCATTACAGG                                                                                       >  SRR4302536.6842028/1‑94 (MQ=60)

         ACATTCTTGCCTCATTAGAAAAATATCACGAACCATATGCCATTTTTGATGATTACTATTGTGGTGCGATATGGTCAGCCACCGCATTACAGGA                                                                                      <  SRR4302536.5180007/94‑1 (MQ=60)

         ACATTCTTGCCTCATTAGAAAAATATCACGAACCATATGCCATTTTTGATGATTACTATTGTGGTGCGATATGGTCAGCCACCGCATTACACGA                                                                                      >  SRR4302536.3318173/1‑94 (MQ=60)

          CATTCTTGCCTCATTAGAAAAATATCACGAACCATATGCCATTTTTGATGATTACTATTGTGGTGCGATATGGTCAGCCACCGCATTACAGGAG                                                                                     >  SRR4302536.4347420/1‑94 (MQ=60)

          CATTCTTGCCTCATTAGAAAAATATCACGAACCATATGCCATTTTTGATGATTACTATTGTGGTGCGATATGGTCAGCCACCGCATTACAGGAG                                                                                     >  SRR4302536.4669400/1‑94 (MQ=60)

          CATTCTTGCCTCATTAGAAAAATATCACGAACCATATGCCATTTTTGATGATTACTATTGTGGTGCGATATGGTCAGCCACCGCATTACAGGAG                                                                                     <  SRR4302536.1341834/94‑1 (MQ=60)

          CATTCTTGCCTCATTAGAAAAATATCACGAACCATATGCCATTTTTGATGATTACTATTGTGGTGCGATATGGTCAGCCACCGCATTACAGGAG                                                                                     >  SRR4302536.4869595/1‑94 (MQ=60)

           ATTCTTGCCTCATTAGAAAAATATCACGAACCATATGCCATTTTTGATGATTACTATTGTGGTGCGATATGGTCAGCCACCGCATTACAGGAGC                                                                                    >  SRR4302536.1651826/1‑94 (MQ=60)

           ATTCTTGCCTCATTAGAAAAATATCACGAACCATATGCCATTTTTGATGATTACTATTGTGGTGCGATATGGTCAGCCACCGCATTACAGGAGC                                                                                    >  SRR4302536.5999432/1‑94 (MQ=60)

           ATTCTTGCCTCATTAGAAAAATATCACGAACCATATGCCATTTTTGATGATTACTATTGTGGTGCGATATGGTCAGCCACCGCATTACAGGAGC                                                                                    >  SRR4302536.6579726/1‑94 (MQ=60)

           ATTCTTGCCTCATTAGAAAAATATCACGAACCATATGCCATTTTTGATGATTACTATTGTGGTGCGATATGGTCAGCCACCGCATTACAGGAGC                                                                                    >  SRR4302536.1954019/1‑94 (MQ=60)

            TTCTTGCCTCATTAGAAAAATATCACGAACCATATGCCATTTTTGATGATTACTATTGTGGTGCGATATGGTCAGCCACCGCATTACAGGAGCA                                                                                   <  SRR4302536.6210269/94‑1 (MQ=60)

             TCTTGCCTCATTAGAAAAATATCACGAACCATATGCCATTTTTGATGATTACTATTGTGGTGCGATATGGTCAGCCACCGCATTACAGGAGCAA                                                                                  <  SRR4302536.1990423/94‑1 (MQ=60)

              CTTGCCTCATTAGAAAAATATCACGAACCATATGCCATTTTTGATGATTACTATTGTGGTGCGATATGGTCAGCCACCGCATTACAGGAGCAAG                                                                                 >  SRR4302536.310545/1‑94 (MQ=60)

               TTGCCTCATTAGAAAAATATCACGAACCATATGCCATTTTTGATGATTACTATTGTGGTGCGATATGGTCAGCCACCGCATTACAGGAGCAAGG                                                                                >  SRR4302536.5797064/1‑94 (MQ=60)

               TTGCCTCATTAGAAAAATATCACGAACCATATGCCATTTTTGATGATTACTATTGTGGTGCGATATGGTCAGCCACCGCATTACAGGAGCAAGG                                                                                <  SRR4302536.1913449/94‑1 (MQ=60)

               TTGCCTCATTAGAAAAATATCACGAACCATATGCCATTTTTGATGATTACTATTGTGGTGCGATATGGTCAGCCACCGCATTACAGGAGCAAGG                                                                                >  SRR4302536.1654386/1‑94 (MQ=60)

                TGCCTCATTAGAAAAATATCACGAACCATATGCCATTTTTGATGATTACTATTGTGGTGCGATATGGTCAGCCACCGCATTACAGGAGCAAGGT                                                                               <  SRR4302536.4551949/94‑1 (MQ=60)

                TGCCTCATTAGAAAAATATCACGAACCATATGCCATTTTTGATGATTACTATTGTGGTGCGATATGGTCAGCCACCGCATTACAGGAGCAAGGT                                                                               >  SRR4302536.770721/1‑94 (MQ=60)

                TGCCTCATTAGAAAAATATCACGAACCATATGCCATTTTTGATGATTACTATTGTGGTGCGATATGGTCAGCCACCGCATTACAGGAGCAAGGT                                                                               <  SRR4302536.12734/94‑1 (MQ=60)

                 GCCTCATTAGAAAAATATCACGAACCATATGCCATTTTTGATGATTACTATTGTGGTGCGATATGGTCAGCCACCGCATTACAGGAGCAAGGTG                                                                              <  SRR4302536.4199287/94‑1 (MQ=60)

                  CCTCATTAGAAAAATATCACGAACCATATGCCATTTTTGATGATTACTATTGTGGTGCGATATGGTCAGCCACCGCATTACAGGAGCAAGGTGT                                                                             <  SRR4302536.993291/94‑1 (MQ=60)

                   CTCATTAGAAAAATATCACGAACCATATGCCATTTTTGATGATTACTATTGTGGTGCGATATGGTCAGCCACCGCATTACAGGAGCAAGGTGTT                                                                            <  SRR4302536.6069105/94‑1 (MQ=60)

                   CTCATTAGAAAAATATCACGAACCATATGCCATTTTTGATGATTACTATTGTGGTGCGATATGGTCAGCCACCGCATTACAGGAGCAAGGTGTT                                                                            <  SRR4302536.3165346/94‑1 (MQ=60)

                   CTCATTAGAAAAATATCACGAACCATATGCCATTTTTGATGATTACTATTGTGGTGCGATATGGTCAGCCACCGCATTACAGGAGCAAGGTGTT                                                                            <  SRR4302536.1210340/94‑1 (MQ=60)

                   CTCATTAGAAAAATATCACGAACCATATGCCATTTTTGATGATTACTATTGTGGTGCGATATGGTCAGCCACCGCATTACAGGAGCAAGGTGTT                                                                            >  SRR4302536.2141641/1‑94 (MQ=60)

                    TCATTAGAAAAATATCACGAACCATATGCCATTTTTGATGATTACTATTGTGGTGCGATATGGTCAGCCACCGCATTACAGGAGCAAGGTGTTG                                                                           <  SRR4302536.6240289/94‑1 (MQ=60)

                    TCATTAGAAAAATATCACGAACCATATGCCATTTTTGATGATTACTATTGTGGTGCGATATGGTCAGCCACCGCATTACAGGAGCAAGGTGTTG                                                                           <  SRR4302536.3503799/94‑1 (MQ=60)

                     CATTAGAAAAATATCACGAACCATATGCCATTTTTGATGATTACTATTGTGGTGCGATATGGTCAGCCACCGCATTACAGGAGCAAGGTGTTGC                                                                          <  SRR4302536.4488780/94‑1 (MQ=60)

                     CATTAGAAAAATATCACGAACCATATGCCATTTTTGATGATTACTATTGTGGTGCGATATGGTCAGCCACCGCATTACAGGAGCAAGGTGTTGC                                                                          >  SRR4302536.1280422/1‑94 (MQ=60)

                     CATTAGAAAAATATCACGAACCATATGCCATTTTTGATGATTACTATTGTGGTGCGATATGGTCAGCCACCGCATTACAGGAGCAAGGTGTTGC                                                                          <  SRR4302536.4815097/94‑1 (MQ=60)

                     CATTAGAAAAATATCACGAACCATATGCCATTTTTGATGATTACTATTGTGGTGCGATATGGTCAGCCACCGCATTACAGGAGCAAGGTGTTGC                                                                          >  SRR4302536.6573689/1‑94 (MQ=60)

                      ATTAGAAAAATATCACGAACCATATGCCATTTTTGATGATTACTATTGTGGTGCGATATGGTCAGCCACCGCATTACAGGAGCAAGGTGTTGCA                                                                         >  SRR4302536.6188757/1‑94 (MQ=60)

                      ATTAGAAAAATATCACGAACCATATGCCATTTTTGATGATTACTATTGTGGTGCGATATGGTCAGCCACCGCATTACAGGAGCAAGGTGTTGCA                                                                         >  SRR4302536.4554068/1‑94 (MQ=60)

                       TTAGAAAAATATCACGAACCATATGCCATTTTTGATGATTACTATTGTGGTGCGATATGGTCAGCCACCGCATTACAGGAGCAAGGTGTTGCAG                                                                        <  SRR4302536.1887953/94‑1 (MQ=60)

                        TAGAAAAATATCACGAACCATATGCCATTTTTGATGATTACTATTGTGGTGCGATATGGTCAGCCACCGCATTACAGGAGCAAGGTGTTGCAGC                                                                       >  SRR4302536.727689/1‑94 (MQ=60)

                         AGAAAAATATCACGAACCATATGCCATTTTTGATGATTACTATTGTGGTGCGATATGGTCAGCCACCGCATTACAGGAGCAAGGTGTTGCAGCC                                                                      >  SRR4302536.2608915/1‑94 (MQ=60)

                         AGAAAAATATCACGAACCATATGCCATTTTTGATGATTACTATTGTGGTGCGATATGGTCAGCCACCGCATTACAGGAGCAAGGTGTTGCAGCC                                                                      >  SRR4302536.3118434/1‑94 (MQ=60)

                           AAAAATATCACGAACCATATGCCATTTTTGATGATTACTATTGTGGTGCGATATGGTCAGCCACCGCATTACAGGAGCAAGGTGTTGCAGCCCT                                                                    <  SRR4302536.310032/94‑1 (MQ=60)

                           AAAAATATCACGAACCATATGCCATTTTTGATGATTACTATTGTGGTGCGATATGGTCAGCCACCGCATTACAGGAGCAAGGTGTTGCAGCCCT                                                                    <  SRR4302536.5642886/94‑1 (MQ=60)

                           AAAAATATCACGAACCATATGCCATTTTTGATGATTACTATTGTGGTGCGATATGGTCAGCCACCGCATTACAGGAGCAAGGTGTTGCAGCCCT                                                                    <  SRR4302536.1973171/94‑1 (MQ=60)

                            AAAATATCACGAACCATATGCCATTTTTGATGCTTACTATTGTGGTGCGATATGGTCAGCCACCGCATTACAGGAGCAAGGTGTTGCAGCCCTG                                                                   >  SRR4302536.6346483/1‑94 (MQ=60)

                            AAAATATCACGAACCATATGCCATTTTTGATGATTACTATTGTGGTGCGATATGGTCAGCCACCGCATTACAGGAGCAAGGTGTTGCAGCCCTG                                                                   <  SRR4302536.3360257/94‑1 (MQ=60)

                            AAAATATCACGAACCATATGCCATTTTTGATGATTACTATTGTGGTGCGATATGGTCAGCCACCGCATTACAGGAGCAAGGTGTTGCAGCCCTG                                                                   >  SRR4302536.3755169/1‑94 (MQ=60)

                            AAAATATCACGAACCATATGCCATTTTTGATGATTACTATTGTGGTGCGATATGGTCAGCCACCGCATTACAGGAGCAAGGTGTTGCAGCCCTG                                                                   >  SRR4302536.566987/1‑94 (MQ=60)

                               ATATCACGAACCATATGCCATTTTTGATGATTACTATTGTGGTGCGATATGGTCAGCCACCGCATTACAGGAGCAAGGTGTTGCAGCCCTGCCC                                                                >  SRR4302536.908861/1‑94 (MQ=60)

                                TATCACGAACCATATGCCATTTTTGATGATTACTATTGTGGTGCGATATGGTCAGCCACCGCATTACAGGAGCAAGGTGTTGCAGCCCTGCTCC                                                               <  SRR4302536.6605333/94‑1 (MQ=60)

                                TATCACGAACCATATGCCATTTTTGATGATTACTATTGTGGTGCGATATGGTCAGCCACCGCATTACAGGAGCAAGGTGTTGCAGCCCTGCCCC                                                               >  SRR4302536.2815439/1‑94 (MQ=60)

                                  TCACGAACCATATGCCATTTTTGATGATTACTATTGTGGTGCGATATGGTCAGCCACCGCATTACAGGAGCAAGGTGTTGCAGCCCTGCCCCGA                                                             <  SRR4302536.3394776/94‑1 (MQ=60)

                                   CACGAACCATATGCCATTTTTGATGATTACTATTGTGGTGCGATATGGTCAGCCACCGCATTACAGGAGCAAGGTGTTGCAGCCCTGCCCCGAT                                                            <  SRR4302536.2553076/94‑1 (MQ=60)

                                   CACGAACCATATGCCATTTTTGATGATTACTATTGTGGTGCGATATGGTCAGCCACCGCATTACAGGAGCAAGGTGTTGCAGCCCTGCCCCGAT                                                            >  SRR4302536.5787803/1‑94 (MQ=60)

                                    ACGAACCATATGCCATTTTTGATGATTACTATTGTGGTGCGATATGGTCAGCCACCGCATTACAGGAGCAAGGTGTTGCAGCCCTGCCCCGATT                                                           >  SRR4302536.5471609/1‑94 (MQ=60)

                                    ACGAACCATATGCCATTTTTGATGATTACTATTGTGGTGCGATATGGTCAGCCACCGCATTACAGGAGCAAGGTGTTGCAGCCCTGCCCCGATT                                                           <  SRR4302536.3694802/94‑1 (MQ=60)

                                      GAACCATATGCCATTTTTGATGATTACTATTGTGGTGCGATATGGTCAGCCACCGCATTACAGGAGCAAGGTGTTGCAGCCCTGCCCCGATTTG                                                         >  SRR4302536.2976693/1‑94 (MQ=60)

                                       AACCATATGCCATTTTTGATGATTACTATTGTGGTGCGATATGGTCAGCCACCGCATTACAGGAGCAAGGTGTTGCAGCCCTGCCCCGATTTGC                                                        >  SRR4302536.6872542/1‑94 (MQ=60)

                                       AACCATATGCCATTTTTGATGATTACTATTGTGGTGCGATATGGTCAGCCACCGCATTACAGGAGCAAGGTGTTGCAGCCCTGCCCCGATTTGC                                                        >  SRR4302536.4741177/1‑94 (MQ=60)

                                        ACCATATGCCATTTTTGATGATTACTATTGTGGTGCGATATGGTCAGCCACCGCATTACAGGAGCAAGGTGTTGCAGCCCTGCCCCGATTTGCT                                                       <  SRR4302536.6782326/94‑1 (MQ=60)

                                         CCATATGCCATTTTTGATGATTACTATTGTGGTGCGATATGGTCAGCCACCGCATTACAGGAGCAAGGTGTTGCAGCCCTGCCCCGATTTGCTC                                                      <  SRR4302536.5722055/94‑1 (MQ=60)

                                         CCATATGCCATTTTTGATGATTACTATTGTGGTGCGATATGGTCAGCCACCGCATTACAGGAGCAAGGTGTTGCAGCCCTGCCCCGATTTGCTC                                                      >  SRR4302536.2692658/1‑94 (MQ=60)

                                         CCATATGCCATTTTTGATGATTACTATTGTGGTGCGATATGGTCAGCCACCGCATTACAGGAGCAAGGTGTTGCAGCCCTGCCCCGATTTGCTC                                                      >  SRR4302536.218273/1‑94 (MQ=60)

                                           ATATGCCATTTTTGATGATTACTATTGTGGTGCGATATGGTCAGCCACCGCATTACAGGAGCAAGGTGTTGCAGCCCTGCCCCGATTTGCTCCC                                                    >  SRR4302536.4872121/1‑94 (MQ=60)

                                           ATATGCCATTTTTGATGATTACTATTGTGGTGCGATATGGTCAGCCACCGCATTACAGGAGCAAGGTGTTGCAGCCCTGCCCCGATTTGCTCCC                                                    <  SRR4302536.1601952/94‑1 (MQ=60)

                                           ATATGCCATTTTTGATGATTACTATTGTGGTGCGATATGGTCAGCCACCGCATTACAGGAGCAAGGTGTTGCAGCCCTGCCCCGATTTGCTCCC                                                    >  SRR4302536.3851213/1‑94 (MQ=60)

                                            TATGCCATTTTTGATGATTACTATTGTTGTGCGATATGGTCAGCCACCGCATTACAGGAGCAAGGTGTTGCAGCCTTGCCCCGATTTGCTCCCT                                                   <  SRR4302536.4608282/94‑1 (MQ=60)

                                            TATGCCATTTTTGATGATTACTATTGTGGTGCGATATGGTCAGCCACCGCATTACAGGAGCAAGGTGTTGCAGCCCTGCCCCGATTTGCTCCCT                                                   <  SRR4302536.432950/94‑1 (MQ=60)

                                            TATGCCATTTTTGATGATTACTATTGTGGTGCGATATGGTCAGCCACCGCATTACAGGAGCAAGGTGTTGCAGCCCTGCCCCGATTTGCTCCCT                                                   <  SRR4302536.418685/94‑1 (MQ=60)

                                             ATGCCATTTTTGATGATTACTATTGTGGTGCGATATGGTCAGCCACCGCATTACAGGAGCAAGGTGTTGCAGCCCTGCCCCGATTTGCTCCCTA                                                  >  SRR4302536.6414199/1‑94 (MQ=60)

                                             ATGCCATTTTTGATGATTACTATTGTGGTGCGATATGGTCAGCCACCGCATTACAGGAGCAAGGTGTTGCAGCCCTGCCCCGATTTGCTCCCTA                                                  >  SRR4302536.6694040/1‑94 (MQ=60)

                                             ATGCCATTTTTGATGATTACTATTGTGGTGCGATATGGTCAGCCACCGCATTACAGGAGCAAGGTGTTGCAGCCCTGCCCCGATTTGCTCCCTA                                                  >  SRR4302536.4116633/1‑94 (MQ=60)

                                             ATGCCATTTTTGATGATTACTATTGTGGTGCGATATGGTCAGCCACCGCATTACAGGAGCAAGGTGTTGCAGCCCTGCCCCGATTTGCTCCCTA                                                  <  SRR4302536.3753962/94‑1 (MQ=60)

                                               GCCATTTTTGATGATTACTATTGTGGTGCGATATGGTCAGCCACCGCATTACAGGAGCAAGGTGTTGCAGCCCTGCCCCGATTTGCTCCCTATG                                                <  SRR4302536.3363829/94‑1 (MQ=60)

                                               GCCATTTTTGATGATTACTATTGTGGTGCGATATGGTCAGCCACCGCATTACAGGAGCAAGGTGTTGCAGCCCTGCCCCGATTTGCTCCCTATG                                                >  SRR4302536.3093064/1‑94 (MQ=60)

                                                 CATTTTTGATGATTACTATTGTGGTGCGATATGGTCAGCCACCGCATTACAGGAGCAAGGTGTTGCAGCCCTGCCCCGATTTGCTCCCTATGCC                                              >  SRR4302536.5627037/1‑94 (MQ=60)

                                                  ATTTTTGATGATTACTATTGTGGTGCGATATGGTCAGCCACCGCATTACAGGAGCAAGGTGTTGCAGCCCTGCCCCGATTTGCTCCCTATGCCG                                             >  SRR4302536.5711753/1‑94 (MQ=60)

                                                      TTGATGATTACTATTGTGGTGCGATATGGTCAGCCACCGCATTACAGGAGCAAGGTGTTGCAGCCCTGCCCCGATTTGCTCCCTATGCCGCAAG                                         >  SRR4302536.1601412/1‑94 (MQ=60)

                                                      TTGATGATTACTATTGTGGTGCGATATGGTCAGCCACCGCATTACAGGAGCAAGGTGTTGCAGCCCTGCCCCGATTTGCTCCCTATGCCGCAAG                                         >  SRR4302536.2818974/1‑94 (MQ=60)

                                                       TGATGATTACTATTGTGGTGCGATATGGTCAGCCACCGCATTACAGGAGCAAGGTGTTGCAGCCCTGCCCCGATTTGCTCCCTATGCCGCAAGT                                        >  SRR4302536.418789/1‑94 (MQ=60)

                                                       TGATGATTACTATTGTGGTGCGATATGGTCAGCCACCGCATTACAGGAGCAAGGTGTTGCAGCCCTGCCCCGATTTGCTCCCTATGCCGCAAGT                                        <  SRR4302536.977398/94‑1 (MQ=60)

                                                       TGATGATTACTATTGTGGTGCGATATGGTCAGCCACCGCATTACAGGAGCAAGGTGTTGCAGCCCTGCCCCGATTTGCTCCCTATGCCGCAAGT                                        <  SRR4302536.1860955/94‑1 (MQ=60)

                                                        GATGATTACTATTGTGGTGCGATATGGTCAGCCACCGCATTACAGGAGCAAGGTGTTGCAGCCCTGCCCCGATTTGCTCCCTATGCCGCAAGTG                                       <  SRR4302536.3397771/94‑1 (MQ=60)

                                                         ATGATTACTATTGTGGTGCGATATGGTCAGCCACCGCATTACAGGAGCAAGGTGTTGCAGCCCTGCCCCGATTTGCTCCCTATGCCGCAAGTGA                                      >  SRR4302536.6377545/1‑94 (MQ=60)

                                                          TGATTACTATTGTGGTGCGATATGGTCAGCCACCGCATTACAGGAGCAAGGTGTTGCAGCCCTGCCCCGATTTGCTCCCTATGCCGCAAGTGAC                                     >  SRR4302536.1076832/1‑94 (MQ=60)

                                                          TGATTACTATTGTGGTGCGATATGGTCAGCCACCGCATTACAGGAGCAAGGTGTTGCAGCCCTGCCCCGATTTGCTCCCTATGCCGCAAGTGAC                                     >  SRR4302536.4184156/1‑94 (MQ=60)

                                                          TGATTACTATTGTGGTGCGATATGGTCAGCCACCGCATTACAGGAGCAAGGTGTTGCAGCCCTGCCCCGATTTGCTCCCTATGCCGCAAGTGAC                                     >  SRR4302536.3015566/1‑94 (MQ=60)

                                                           GATTACTATTGTGGTGCGATATGGTCAGCCACCGCATTACAGGAGCAAGGTGTTGCAGCCCTGCCCCGATTTGCTCCCTATGCCGCAAGTAACT                                    <  SRR4302536.5368810/94‑1 (MQ=60)

                                                            ATTACTATTGTGGTGCGATATGGTCAGCCACCGCATTACAGGAGCAAGGTGTTGCAGCCCTGCCCCGATTTGCTCCCTATGCCGCAAGTGACTA                                   >  SRR4302536.3598393/1‑94 (MQ=60)

                                                            ATTACTATTGTGGTGCGATATGGTCAGCCACCGCATTACAGGAGCAAGGTGTTGCAGCCCTGCCCCGATTTGCTCCCTATGCCGCAAGTGACTA                                   >  SRR4302536.3611032/1‑94 (MQ=60)

                                                            ATTACTATTGTGGTGCGATATGGTCAGCCACCGCATTACAGGAGCAAGGTGTTGCAGCCCTGCCCCGATTTGCTCCCTATGCCGCAAGTGACTA                                   >  SRR4302536.668287/1‑94 (MQ=60)

                                                              TACTATTGTGGTGCGATATGGTCAGCCACCGCATTACAGGAGCAAGGTGTTGCAGCCCTGCCCCGATTTGCTCCCTATGCCGCAAGTGACTACT                                 <  SRR4302536.3879623/94‑1 (MQ=60)

                                                                CTATTGTGGTGCGATATGGTCAGCCACCGCATTACAGGAGCAAGGTGTTGCAGCCCTGCCCCGATTTGCTCCCTATGCCGCAAGTGACTACTGC                               >  SRR4302536.2236449/1‑94 (MQ=60)

                                                                CTATTGTGGTGCGATATGGTCAGCCACCGCATTACAGGAGCAAGGTGTTGCAGCCCTGCCCCGATTTGCTCCCTATGCCGCAAGTGACTACTGC                               >  SRR4302536.320814/1‑94 (MQ=60)

                                                                 TATTGTGGTGCGATATGGTCAGCCACCGCATTACAGGAGCAAGGTGTTGCAGCCCTGCCCCGATTTGCTCCCTATGCCGCAAGTGACTACTGCG                              >  SRR4302536.627364/1‑94 (MQ=60)

                                                                    TGTGGTGCGATATGGTCAGCCACCGCATTACAGGAGCAAGGTGTTGCAGCCCTGCCCCGATTTGCTCCCTATGCCGCAAGTGACTACTGCGCCG                           >  SRR4302536.2379578/1‑94 (MQ=60)

                                                                      TGGTGCGATATGGTCAGCCACCGCATTACAGGAGCAAGGTGTTGCAGCCCTGCCCCGATTTGCTCCCTATGCCGCAAGTGACTACTGCGCCGAT                         <  SRR4302536.4819483/94‑1 (MQ=60)

                                                                        GTGCGATATGGTCAGCCACCGCATTACAGGAGCAAGGTGTTGCAGCCCTGCCCCGATTTGCTCCCTATGCCGCAAGTGACTACTGCGCCGATGT                       <  SRR4302536.4916521/94‑1 (MQ=60)

                                                                           CGATATGGTCAGCCACCGCATTACAGGAGCAAGGTGTTGCAGCCCTGCCCCGATTTGCTCCCTATGCCGCAAGTGACTACTGCGCCGATGTGTT                    >  SRR4302536.4178951/1‑94 (MQ=60)

                                                                            GATATGGTCAGCCACCGCATTACAGGAGCAAGGTGTTGCAGCCCTGCCCCGATTTGCTCCCTATGCCGCAAGTGACTACTGCGCCGATGTGTTG                   >  SRR4302536.3490365/1‑94 (MQ=60)

                                                                             ATATGGTCAGCCACCGCATTACAGGAGCAAGGTGTTGCAGCCCTGCCCCGATTTGCTCCCTATGCCGCAAGTGACTACTGCGCCGATGTGTTGC                  >  SRR4302536.6053220/1‑94 (MQ=60)

                                                                             ATATGGTCAGCCACCGCATTACAGGAGCAAGGTGTTGCAGCCCTGCCCCGATTTGCTCCCTATGCCGCAAGTGACTACTGCGCCGATGTGTTGC                  <  SRR4302536.5545116/94‑1 (MQ=60)

                                                                               ATGGTCAGCCACCGCATTACAGGAGCAAGGTGTTGCAGCCCTGCCCCGATTTGCTCCCTATGCCGCAAGTGACTACTGCGCCGATGTGTTGCGT                >  SRR4302536.6210283/1‑94 (MQ=60)

                                                                                TGGTCAGCCACCGCATTACAGGAGCAAGGTGTTGCAGCCCCGCCCCCATTTTCTCCCTATGCCGCCAGTGACTACTTCGCCGcacggtttcgtt               >  SRR4302536.5796644/1‑82 (MQ=60)

                                                                                 GGTCAGCCACCGCATTACAGGAGCAAGGTGTTGCAGCCCTGCCCCGATTTGCTCCCTATGCCGCAAGTGACTACTGCGCCGATGTGTTGCGTCA              >  SRR4302536.2162720/1‑94 (MQ=60)

                                                                                 GGTCAGCCACCGCATTACAGGAGCAAGGTGTTGCAGCCCTGCCCCGATTTGCTCCCTATGCCGCAAGTGACTACTGCGCCGATGTGTTGCGTCA              <  SRR4302536.1477578/94‑1 (MQ=60)

                                                                                   TCAGCCACCGCATTACAGGAGCAAGGTGTTGCAGCCCTGCCCCGATTTGCTCCCTATGCCGCAAGTGACTACTGCGCCGATGTGTTGCGTCATA            <  SRR4302536.4354638/94‑1 (MQ=60)

                                                                                    CAGCCACCGCATTACAGGAGCAAGGTGTTGCAGCCCTGCCCCGATTTGCTCCCTATGCCGCAAGTGACTACTGCGCCGATGTGTTGCGTCATAT           >  SRR4302536.6710823/1‑94 (MQ=60)

                                                                                     AGCCACCGCATTACAGGAGCAAGGTGTTGCAGCCCTGCCCCGATTTGCTCCCTATGCCGCAAGTGACTACTGCGCCGATGTGTTGCGTCATATC          >  SRR4302536.244918/1‑94 (MQ=60)

                                                                                      GCCACCGCATTACAGGAGCAAGGTGTTGCAGCCCTGCCCCGATTTGCTCCCGATGCCGCAAGTGACTACTGCGTCGATGTGTTGCGTCAGATCA         <  SRR4302536.4253472/94‑1 (MQ=60)

                                                                                      ACCACCGCATTACAGGAGCAAGGTGTTGCAGCCCTGCCCCGATTTGCTCCCTATGCCGCAAGTGACTACTGCGCCGATGTGTTGCGTCATATCA         <  SRR4302536.4683910/94‑1 (MQ=60)

                                                                                       CCACCGCATTACAGGAGCAAGGTGTTGCAGCCCTGCCCCGATTTGCTCCCTATGCCGCAAGTGACTACTGCGCCGATGTGTTGCGTCATATCAA        >  SRR4302536.2136861/1‑94 (MQ=60)

                                                                                        CACCGCATTACAGGAGCAAGGTGTTGCAGCCCTGCCCCGATTTGCTCCCTATGCCGCAAGTGACTACTGCGCCGATGTGTTGCGTCATATCAAT       >  SRR4302536.3526774/1‑94 (MQ=60)

                                                                                        CACCGCATTACAGGAGCAAGGTGTTGCAGCCCTGCCCCGATTTGCTCCCTATGCCGCAAGTGACTACTGCGCCGATGTGTTGCGTCATATCAAT       >  SRR4302536.3373834/1‑94 (MQ=60)

                                                                                         ACCGCATTACAGGAGCAAGGTGTTGCAGCCCTGCCCCGATTTGCTCCCTATGCCGCAAGTGACTACTGCGCCGATGTGTTGCGTCATATCAATC      <  SRR4302536.3501655/94‑1 (MQ=60)

                                                                                          CCGCATTACAGGAGCAAGGTGTTGCAGCCCTGCCCCGATTTGCTCCCTATGCCGCAAGTGACTACTGCGCCGATGTGTTGCGTCATATCAATCA     <  SRR4302536.416361/94‑1 (MQ=60)

                                                                                           CGCATTACATGAGCAAGGTGTTGCAGCCCTGCCCCGATTTGCTCCCTATGCCGCAAGTGACTACTGCGCCGATGTGTTGCGTCATATCAATCAT    <  SRR4302536.5509690/94‑1 (MQ=60)

                                                                                           CGCATTACAGGAGCAAGGTGTTGCAGCCCTGCCCCGATTTGCTCCCTATGCCGCAAGTGACTACTGCGCCGATGTGTTGCGTCATATCAATCAT    >  SRR4302536.1748001/1‑94 (MQ=60)

                                                                                           CGCATTACAGGAGCAAGGTGTTGCAGCCCTGCCCCGATTTGCTCCCTATGCCGCAAGTGACTACTGCGCCGATGTGTTGCGTCATATCAATCAT    <  SRR4302536.3949180/94‑1 (MQ=60)

                                                                                           CGCATTACAGGAGCAAGGTGTTGCAGCCCTGCCCCGATTTGCTCCCTATGCCGCAAGTGACTACTGCGCCGATGTGTTGCGTCATATCAATCAT    >  SRR4302536.812478/1‑94 (MQ=60)

                                                                                            GCATTACAGGAGCAAGGTGTTGCAGCCCTGCCCCGATTTGCTCCCTATGCCGCAAGTGACTACTGCGCCGATGTGTTGCGTCATATCAATCATC   >  SRR4302536.6734253/1‑94 (MQ=60)

                                                                                             CATTACAGGAGCAAGGTGTTGCAGCCCTGCCCCGATTTGCTCCCTATGCCGCAAGTGACTACTGCGCCGATGTGTTGCGTCATATCAATCATCC  <  SRR4302536.587155/94‑1 (MQ=60)

                                                                                             CATTACAGGAGCAAGGTGTTGCAGCCCTGCCCCGATTTGCTCCCTATGCCGCAAGTGACTACTGCGCCGATGTGTTGCGTCATATCAATCATCC  >  SRR4302536.5273944/1‑94 (MQ=60)

CTGATGAGCACATTCTTGCCTCATTAGAAAAATATCACGAACCATATGCCATTTTTGATGATTACTATTGTGGTGCGATATGGTCAGCCACCGTATTACAGGAGCAAGGTGTTGCAGCCCTGCCCCGATTTGCTCCCTATGCCGCAAGTGACTACTGCGCCGATGTGTTGCGTCATATCAATCATCC  >  NC_000913/2195530‑2195716

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 8 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`