Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1475	266.7	13469680	98.2%	13227225	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,204,258	T→C	W182R (TGG→CGG)	yehM →	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,204,258	0	T	C	100.0%	612.2 / NA	190	W182R (TGG→CGG)	yehM	hypothetical protein
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (80/110); total (80/110)

Only 100 of 229 total aligned reads displayed.

CCCTCTGCGCTGGCGCACTATTTTGCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCTGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACGCTCCGGCACTGGCAAAGATGTGGCGC  >  NC_000913/2204168‑2204347

  ctctGCGCTGGCGCGCTATTTTGCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCcggat                                                                                       <  1:1232481/93‑1 (MQ=255)

  ctctGCGCTGGCGCACTATTTTGCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCcggat                                                                                       >  2:4304404/1‑93 (MQ=255)

  ctctGCGCTGGCGCACTATTTTGCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCcggat                                                                                       >  2:6497464/1‑93 (MQ=255)

   tctGCGCTGGCGCACTATTTTGCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCcggatt                                                                                      <  1:3971073/93‑1 (MQ=255)

      gcgcTGGCGCACTATTTTGCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCcggattggt                                                                                   >  2:312487/1‑92 (MQ=255)

      gcgcTGGCGCACTATTTTGCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCcggattgga                                                                                   <  1:5040608/93‑1 (MQ=255)

        gcTGGCGCACTATTTTGCCCAACTGCTGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATg                                                                                 <  1:3356991/93‑1 (MQ=255)

        gcTGGCGCACTATTTTGCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATg                                                                                 <  1:445704/93‑1 (MQ=255)

         cTGGCGCACTATTTTGCCCAACTGCGGGGCGGCGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATgg                                                                                <  2:3434666/93‑1 (MQ=255)

         cTGGCGCACTATTTTGCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATgg                                                                                >  2:680625/1‑93 (MQ=255)

          tGGCGCACTATTTTGCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATggg                                                                               <  1:4744251/93‑1 (MQ=255)

          tGGCGCACTATTTTGCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATggg                                                                               >  2:3509534/1‑93 (MQ=255)

           ggCGCACTATTTTGCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGc                                                                              <  1:6328904/93‑1 (MQ=255)

             cgcACTATTTTGCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGa                                                                            >  1:1566154/1‑93 (MQ=255)

              gcACTATTTTGCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGAt                                                                           <  1:2350571/93‑1 (MQ=255)

              gcACTATTTTGCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGAt                                                                           >  2:1150255/1‑93 (MQ=255)

              gcACTATTTTGCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGAt                                                                           >  1:941702/1‑93 (MQ=255)

                aCTATTTTGCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATgc                                                                         >  2:807649/1‑93 (MQ=255)

                 cTATTTTGCCCACCTGCGGCGCGCCGCCTCCGGCGATGCGCTCAATCGTCAGCGCTAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATgca                                                                        <  1:3361805/93‑1 (MQ=255)

                 cTATTTTGCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATgca                                                                        >  1:3946709/1‑93 (MQ=255)

                 cTATTTTGCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATgca                                                                        >  1:5191725/1‑93 (MQ=255)

                  tATTTTGCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATgcag                                                                       <  1:4137039/93‑1 (MQ=255)

                   aTTTTGCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATgcagc                                                                      <  1:5690815/93‑1 (MQ=255)

                   aTTTTGCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATgcagc                                                                      >  1:498463/1‑93 (MQ=255)

                       tGCCCAACTGCGGGGGGACTCCCCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTAGATGGGCGATGCAGCaaaa                                                                  <  1:6552951/93‑1 (MQ=255)

                        gCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCaaaaa                                                                 >  2:1173208/1‑92 (MQ=255)

                          ccAACTGCGGGGCAGCGCCTCCAGCGATACAATCACTCGTCCGCGCGACACCTTTATGGCCCGCCGGTTTGGATGGGCGATGCAGCAGcataa                                                               <  1:6726631/93‑1 (MQ=255)

                           cAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAaataat                                                              <  2:6245707/93‑1 (MQ=255)

                              cTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGc                                                           <  1:3195159/93‑1 (MQ=255)

                              cTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGc                                                           >  1:2949249/1‑93 (MQ=255)

                                gCGGGGCGACGCCTCCGGCTATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGa                                                         >  2:6126575/1‑93 (MQ=255)

                                 cGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGAc                                                        <  1:3107004/93‑1 (MQ=255)

                                 cGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGAc                                                        <  2:4703095/93‑1 (MQ=255)

                                   gggCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACgt                                                      <  2:5372159/93‑1 (MQ=255)

                                   gggCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACgt                                                      <  1:4314647/93‑1 (MQ=255)

                                   gggCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACgt                                                      <  2:5298448/93‑1 (MQ=255)

                                   gggCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGACTGGATGGGCGATGCAGCAAAATAATGGCGACgg                                                      >  2:6673305/1‑92 (MQ=255)

                                     gCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACgtgt                                                    >  1:1460174/1‑93 (MQ=255)

                                     gCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACgtgt                                                    >  1:5506207/1‑93 (MQ=255)

                                      cGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGtt                                                   <  2:154033/93‑1 (MQ=255)

                                      agACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGtt                                                   >  1:6434593/2‑93 (MQ=255)

                                        aCGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAg                                                 >  1:4342950/1‑93 (MQ=255)

                                         cGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGt                                                >  2:4427628/1‑93 (MQ=255)

                                          gCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGtt                                               <  1:5417128/93‑1 (MQ=255)

                                          gCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGtt                                               <  2:4115802/93‑1 (MQ=255)

                                          gCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGtt                                               <  1:6673009/93‑1 (MQ=255)

                                           ccTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTg                                              >  2:1879788/1‑93 (MQ=255)

                                           ccTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGAGAGATGCAGCAAAATAATGGCGACGCGTTAGTTg                                              >  2:4170139/1‑93 (MQ=255)

                                            cTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGtttt                                             >  1:106083/1‑91 (MQ=255)

                                             tCCGGCGATGCGCTCAATCGTCAGCGCGAAGCATTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTc                                            >  2:1656217/1‑93 (MQ=255)

                                              ccGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCt                                           <  1:2152308/93‑1 (MQ=255)

                                               cGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTg                                          >  2:2483023/1‑93 (MQ=255)

                                                ggCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGc                                         <  2:6063746/93‑1 (MQ=255)

                                                ggCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGc                                         >  2:2691630/1‑93 (MQ=255)

                                                ggCGATGAGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGc                                         >  1:3603596/1‑93 (MQ=255)

                                                 gCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTATCTGCg                                        >  1:2080419/1‑93 (MQ=255)

                                                  cGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCgg                                       <  2:4722119/93‑1 (MQ=255)

                                                   gATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCggg                                      >  2:5802932/1‑92 (MQ=255)

                                                   gATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCggg                                      >  2:2546344/1‑92 (MQ=255)

                                                   gATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGt                                      <  1:1013485/93‑1 (MQ=255)

                                                   gATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGt                                      <  1:2799325/93‑1 (MQ=255)

                                                    atccgcTCACTCGTCGGCGCGAAGCCTTTATGGCCCGCCGAATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGta                                     <  1:1999950/90‑2 (MQ=255)

                                                      gcgcTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGtggc                                   <  2:2280901/93‑1 (MQ=255)

                                                       cgcTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGtggct                                  <  1:5248453/93‑1 (MQ=255)

                                                       cgcTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGtggct                                  <  1:3627332/93‑1 (MQ=255)

                                                        gcTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTTGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCgctggctg                                 >  1:6236966/1‑93 (MQ=255)

                                                         cTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGtggctgg                                >  2:636745/1‑93 (MQ=255)

                                                          tCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGtggctggc                               >  2:3040700/1‑93 (MQ=255)

                                                          tCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGtggctggc                               >  1:2464247/1‑93 (MQ=255)

                                                          tCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGtggctggc                               >  2:213584/1‑93 (MQ=255)

                                                          tCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGtggctggc                               >  2:6100912/1‑93 (MQ=255)

                                                           cAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCa                              <  2:1845081/93‑1 (MQ=255)

                                                           cAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCa                              >  2:3950275/1‑93 (MQ=255)

                                                           cAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCa                              <  1:113891/93‑1 (MQ=255)

                                                            aaTCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGCCGTGTTAGTTGTCTGCGGtggctgggcg                             >  1:1609426/1‑90 (MQ=255)

                                                            aaTCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCAc                             >  1:5865473/1‑93 (MQ=255)

                                                            aaTCCTCAGCGCGAATCCTTTATGGCCCTCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGTCAc                             <  1:3529170/93‑1 (MQ=255)

                                                              tCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACGc                           <  1:1824285/93‑1 (MQ=255)

                                                                gTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACGCTc                         >  1:6157438/1‑93 (MQ=255)

                                                                gTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACGCTc                         <  1:428895/93‑1 (MQ=255)

                                                                 tCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACGCTcc                        <  2:2957753/93‑1 (MQ=255)

                                                                 tCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACGCTcc                        <  2:1042594/93‑1 (MQ=255)

                                                                 tCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACGCTcc                        >  1:2398442/1‑93 (MQ=255)

                                                                  cAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACGCTCCg                       <  2:5138639/93‑1 (MQ=255)

                                                                      gcgAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACGCTCCGGCAc                   <  2:3831932/93‑1 (MQ=255)

                                                                        gAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACGCTCCGGCACTg                 >  1:6061294/1‑93 (MQ=255)

                                                                        gAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACGCTCCGGCACTg                 <  2:1280668/93‑1 (MQ=255)

                                                                         acgCCGTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACGCTCCGGCACTgg                <  1:5817246/91‑1 (MQ=255)

                                                                         aaGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACGCTCCGGCACTgg                >  2:1105844/1‑93 (MQ=255)

                                                                          aGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACGCTCCGGCACTGGc               >  1:329650/1‑93 (MQ=255)

                                                                               ttATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACGCTCCGGCACTGGCAAAGa          <  2:5445475/93‑1 (MQ=255)

                                                                               ttATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACGCTCCGGCACTGGCAAAGa          <  2:1412049/93‑1 (MQ=255)

                                                                               ttATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACGCTCCGGCACTGGCAAAGa          <  2:3378606/93‑1 (MQ=255)

                                                                                tATGGCCCGCCGGATTGGATGGACGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACGCTCCGGCACTGGCAAAGAt         <  2:3857781/93‑1 (MQ=255)

                                                                                     cccGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACGCTCCGGCACTGGCAAAGATGTGgc    <  1:3494242/93‑1 (MQ=255)

                                                                                      ccgccgGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACGCTCCGGCACTGGCAAAGATGTGgcg   <  2:5899280/93‑1 (MQ=255)

                                                                                      ccgccgGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACGCTCCGGCACTGGCAAAGATGTGgcg   >  2:5167146/1‑93 (MQ=255)

                                                                                      ccgccgGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGAACCCTCCGGCACTGGCAAAGATGTGgcg   >  1:912964/1‑93 (MQ=255)

                                                                                       cGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACGCTCCGGCACTGGCAAAGATGTGgcgc  <  2:5675551/93‑1 (MQ=255)

                                                                                       cGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACGCTCCGGCACTGGCAAAGATGTGgcgc  <  2:6552238/93‑1 (MQ=255)

CCCTCTGCGCTGGCGCACTATTTTGCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCTGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACGCTCCGGCACTGGCAAAGATGTGGCGC  >  NC_000913/2204168‑2204347

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 17 ≤` `ATCG/ATCG` `< 26 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

TTACCCTCTGCGCTGGCGCACTATTTTGCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCTGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACGCTCCGGCACTGGCAAAGATGTGGCGCGAAT  >  NC_000913/2204165‑2204351

TTACCCTCTGCGCTGGGGCACTATTTTGCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCC                                                                                               <  SRR4302536.1886682/94‑1 (MQ=60)

 TACCCTCTGCGCTGGCGCACTATTTTGCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCG                                                                                              >  SRR4302536.6785519/1‑94 (MQ=60)

 TACCCTCTGCGCTGGCGCACTATTTTGCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCG                                                                                              >  SRR4302536.4987595/1‑94 (MQ=60)

  ACCCTCTGCGCTGGCGCACTATTTTGCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGG                                                                                             <  SRR4302536.4478511/94‑1 (MQ=60)

    CCTCTGCGCTGGCGCACTATTTTGCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGAT                                                                                           <  SRR4302536.4505439/94‑1 (MQ=60)

     CTCTGCGCTGGCGCGCTATTTTGCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATT                                                                                          <  SRR4302536.1269499/94‑1 (MQ=60)

     CTCTGCGCTGGCGCACTATTTTGCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATT                                                                                          <  SRR4302536.1284970/94‑1 (MQ=60)

     CTCTGCGCTGGCGCACTATTTTGCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATT                                                                                          <  SRR4302536.5382019/94‑1 (MQ=60)

      TCTGCGCTGGCGCACTATTTTGCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTG                                                                                         <  SRR4302536.4088943/94‑1 (MQ=60)

         GCGCTGGCGCACTATTTTGCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGAT                                                                                      <  SRR4302536.1912229/94‑1 (MQ=60)

         GCGCTGGCGCACTATTTTGCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGAT                                                                                      <  SRR4302536.5191682/94‑1 (MQ=60)

          ccgtggcaCACTATCTTGCCGAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTTGATG                                                                                     <  SRR4302536.3225849/86‑1 (MQ=60)

          CGCTGGCGCACTATTTTGCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATG                                                                                     <  SRR4302536.4285530/94‑1 (MQ=60)

           GCTGGCGCACTATTTTGCCCAACTGCTGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGG                                                                                    <  SRR4302536.3456628/94‑1 (MQ=60)

           GCTGGCGCACTATTTTGCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGG                                                                                    <  SRR4302536.580783/94‑1 (MQ=60)

           GCTGGCGCACTATTTTGCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGG                                                                                    >  SRR4302536.935871/1‑94 (MQ=60)

           GCTGGCGCACTATTTTGCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGG                                                                                    <  SRR4302536.457431/94‑1 (MQ=60)

            ctgcggcagtattgtcCCCAACTGCGGTGAGGCGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGG                                                                                   <  SRR4302536.993240/78‑1 (MQ=60)

            CTGGCGCACTATTTTGCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGG                                                                                   <  SRR4302536.5318553/94‑1 (MQ=60)

            CTGGCGCACTATTTTGCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGG                                                                                   <  SRR4302536.3719555/94‑1 (MQ=60)

             TGGCGCACTATTTTGCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGC                                                                                  <  SRR4302536.4887034/94‑1 (MQ=60)

             TGGCGCACTATTTTGCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATCGGATGGGC                                                                                  >  SRR4302536.3361073/1‑94 (MQ=60)

              GGCGCACTATTTTGCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCG                                                                                 <  SRR4302536.6517391/94‑1 (MQ=60)

               GCGCACTATTTTGCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGA                                                                                >  SRR4302536.1612110/1‑94 (MQ=60)

                CGCACTATTTTGCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGAT                                                                               >  SRR4302536.969482/1‑94 (MQ=60)

                CGCACTATTTTGCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGAT                                                                               <  SRR4302536.966863/94‑1 (MQ=60)

                 GCACTATTTTGCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATG                                                                              <  SRR4302536.2421830/94‑1 (MQ=60)

                  CACTATTTTGCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGC                                                                             >  SRR4302536.6169426/1‑94 (MQ=60)

                   ACTATTTTGCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCA                                                                            >  SRR4302536.5346540/1‑94 (MQ=60)

                   ACTATTTTGCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCA                                                                            >  SRR4302536.4063942/1‑94 (MQ=60)

                   ACTATTTTGCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCA                                                                            <  SRR4302536.3458375/94‑1 (MQ=60)

                   ACTATTTTGCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCA                                                                            >  SRR4302536.2437294/1‑94 (MQ=60)

                    CTATTTTGCCCACCTGCGGCGCGCCGCCTCCGGCGATGCGCTCAATCGTCAGCGCTAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAG                                                                           <  SRR4302536.3461628/94‑1 (MQ=60)

                     TATTTTGCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGC                                                                          >  SRR4302536.511324/1‑94 (MQ=60)

                     TATTTTGCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGC                                                                          <  SRR4302536.4259715/94‑1 (MQ=60)

                      ATTTTGCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCA                                                                         <  SRR4302536.5860023/94‑1 (MQ=60)

                          TGCGCAACTGCGGGGCGACGCCTCCGGCGATGCCCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAAT                                                                     <  SRR4302536.5562664/94‑1 (MQ=60)

                          TGCCCAACTGCGGGGGGACTCCCCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTAGATGGGCGATGCAGCAAAAT                                                                     <  SRR4302536.6748098/94‑1 (MQ=60)

                          TGCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAAT                                                                     >  SRR4302536.2811833/1‑94 (MQ=60)

                          TGCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAAT                                                                     <  SRR4302536.3835347/94‑1 (MQ=60)

                           GCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATA                                                                    <  SRR4302536.4913121/94‑1 (MQ=60)

                           GCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATA                                                                    <  SRR4302536.6025932/94‑1 (MQ=60)

                             CCAACTGCGGGGCGACGCGTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAAT                                                                  <  SRR4302536.5937048/94‑1 (MQ=60)

                             CCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAAT                                                                  <  SRR4302536.4762997/94‑1 (MQ=60)

                              CCACTGCGGGGCGGCGCCTCCGGCGATGCGCTCCATCGTCAGCGCGAAGCCTTTATGGGCCCCCGGATTGGTTGGGCGCTGCAACAAAAAAATG                                                                 >  SRR4302536.5704828/1‑94 (MQ=48)

                              CAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATG                                                                 <  SRR4302536.2305371/94‑1 (MQ=60)

                               CACTGCGGGCCGACGCCTCCGGCGATGCGGTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGG                                                                <  SRR4302536.6644566/94‑1 (MQ=60)

                               AACTGCGGGGCGACGCCTTCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGTGATGCAGCAAACTACTGG                                                                >  SRR4302536.3401303/1‑94 (MQ=60)

                                ACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGC                                                               >  SRR4302536.3036188/1‑94 (MQ=60)

                                 CTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCG                                                              <  SRR4302536.272949/94‑1 (MQ=60)

                                 CTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCG                                                              <  SRR4302536.3288821/94‑1 (MQ=60)

                                    CGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACG                                                           <  SRR4302536.3197712/94‑1 (MQ=60)

                                      GGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTG                                                         <  SRR4302536.4443805/94‑1 (MQ=60)

                                       GGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGT                                                        >  SRR4302536.2257907/1‑94 (MQ=60)

                                       GGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGT                                                        >  SRR4302536.5670468/1‑94 (MQ=60)

                                       GGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGT                                                        >  SRR4302536.1503384/1‑94 (MQ=60)

                                        GCGTCGCCACCGGCGATGCGCTGAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTT                                                       <  SRR4302536.679254/94‑1 (MQ=60)

                                        GAGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTT                                                       >  SRR4302536.6626907/1‑94 (MQ=60)

                                         CGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTA                                                      <  SRR4302536.6469901/94‑1 (MQ=60)

                                         CGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTA                                                      <  SRR4302536.4875793/94‑1 (MQ=60)

                                          GACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAG                                                     >  SRR4302536.4472982/1‑94 (MQ=60)

                                           ACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGT                                                    <  SRR4302536.5301753/94‑1 (MQ=60)

                                            CGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTT                                                   <  SRR4302536.2157278/94‑1 (MQ=60)

                                             GCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTG                                                  <  SRR4302536.5579041/94‑1 (MQ=60)

                                             GCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTG                                                  <  SRR4302536.6871276/94‑1 (MQ=60)

                                             GCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTG                                                  <  SRR4302536.6871466/94‑1 (MQ=60)

                                             GCCTCAGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATCGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTG                                                  >  SRR4302536.1552274/1‑94 (MQ=60)

                                              CCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTTT                                                 >  SRR4302536.108913/1‑94 (MQ=60)

                                               CTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTC                                                <  SRR4302536.4332106/94‑1 (MQ=60)

                                               CTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATAGCCCGCCGGATTGGATGGGCGATGCAGCCAAATAATAGCCACGTGTTAGctgtt                                                >  SRR4302536.1957327/1‑89 (MQ=60)

                                                TCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCT                                               <  SRR4302536.2067532/94‑1 (MQ=60)

                                                TCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCT                                               <  SRR4302536.1802753/94‑1 (MQ=60)

                                                 CCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTG                                              <  SRR4302536.173853/94‑1 (MQ=60)

                                                 CCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTG                                              <  SRR4302536.2216964/94‑1 (MQ=60)

                                                  TGGCGATGAGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGC                                             >  SRR4302536.3711358/1‑94 (MQ=60)

                                                   GGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTATCTGCG                                            >  SRR4302536.2143058/1‑94 (MQ=60)

                                                   GGCGATGCGCTCAAGCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCG                                            >  SRR4302536.6626040/1‑94 (MQ=60)

                                                     CGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGT                                          <  SRR4302536.5641445/94‑1 (MQ=60)

                                                     CGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGGTAGTTGTCTGCGGG                                          >  SRR4302536.6323700/1‑94 (MQ=60)

                                                      GATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGCTTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTG                                         >  SRR4302536.1166226/1‑94 (MQ=60)

                                                      GATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTG                                         <  SRR4302536.1043422/94‑1 (MQ=60)

                                                      GATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTG                                         <  SRR4302536.1081908/94‑1 (MQ=60)

                                                      GATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTG                                         <  SRR4302536.2882348/94‑1 (MQ=60)

                                                      GATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGGG                                         >  SRR4302536.4819107/1‑94 (MQ=60)

                                                       ATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGG                                        <  SRR4302536.3600899/94‑1 (MQ=60)

                                                       ATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGG                                        >  SRR4302536.1211477/1‑94 (MQ=60)

                                                       ATCCGCTCACTCGTCGGCGCGAAGCCTTTATGGCCCGCCGAATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTAG                                        <  SRR4302536.2060140/94‑1 (MQ=60)

                                                        TGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGC                                       >  SRR4302536.4097864/1‑94 (MQ=60)

                                                         GCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCT                                      <  SRR4302536.3515281/94‑1 (MQ=60)

                                                          CGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTTGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGCTGGCTG                                     >  SRR4302536.6422773/1‑94 (MQ=60)

                                                          CGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTG                                     <  SRR4302536.3735817/94‑1 (MQ=60)

                                                          CGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTG                                     <  SRR4302536.5404854/94‑1 (MQ=60)

                                                          CGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTG                                     <  SRR4302536.127470/94‑1 (MQ=60)

                                                            CTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGC                                   >  SRR4302536.2538659/1‑94 (MQ=60)

                                                              CAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGCCGTGTTAGTTGTCTGCGGTGGCTGGgcg                                 >  SRR4302536.1656366/1‑91 (MQ=60)

                                                              CAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCAC                                 <  SRR4302536.116909/94‑1 (MQ=60)

                                                              CAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCAC                                 >  SRR4302536.6040243/1‑94 (MQ=60)

                                                               AATCCTCAGCGCGAATCCTTTATGGCCCTCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGTCACG                                <  SRR4302536.3634632/94‑1 (MQ=60)

                                                                 TCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACGCT                              <  SRR4302536.1879311/94‑1 (MQ=60)

                                                                  CGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACGCTC                             >  SRR4302536.6340866/1‑94 (MQ=60)

                                                                   GTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACGCTCC                            <  SRR4302536.440188/94‑1 (MQ=60)

                                                                   GTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACGCTCC                            >  SRR4302536.2471040/1‑94 (MQ=60)

                                                                    TCAGCGCGAAGCCTTTATGCATCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACCCTCCG                           <  SRR4302536.3590899/94‑1 (MQ=60)

                                                                     CAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACGCTCCGG                          >  SRR4302536.4461921/1‑94 (MQ=60)

                                                                         GCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACGCTCCGGCACT                      >  SRR4302536.6702073/1‑94 (MQ=60)

                                                                          CGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACGCTCCGGCACTG                     <  SRR4302536.4433129/94‑1 (MQ=60)

                                                                          CGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACGCTCCGGCACTG                     <  SRR4302536.6912447/94‑1 (MQ=60)

                                                                          CGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACGCTCCGGCACTG                     >  SRR4302536.6242120/1‑94 (MQ=60)

                                                                            ACGCCGTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACGCTCCGGCACTGGC                   <  SRR4302536.5990534/94‑1 (MQ=60)

                                                                            AAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACGCTCCGGCACTGGC                   >  SRR4302536.338400/1‑94 (MQ=60)

                                                                            AAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACGCTCCGGCACTGGC                   <  SRR4302536.2504813/94‑1 (MQ=60)

                                                                            AAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACGCTCCGGCACTGGC                   <  SRR4302536.3696087/94‑1 (MQ=60)

                                                                            AAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACGCTCCGGCACTGGC                   >  SRR4302536.3166804/1‑94 (MQ=60)

                                                                             AGCGTTTATGGCTCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACGCTCCGGCACAGGCA                  <  SRR4302536.6219512/94‑1 (MQ=60)

                                                                             AGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACGCTCCGGCACTGGCA                  >  SRR4302536.3384058/1‑94 (MQ=60)

                                                                               CTTTTATGGCCGGCCGGATTGGATGGGCGATGCAGCAAAATAGTGGCGACGTGTTAGTTGTCTGCGGTGGCTGGTCCGCTACGGCACTGGCAAA                <  SRR4302536.5177113/94‑1 (MQ=60)

                                                                                CTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACGCTCCGGCACTGGCAAAG               >  SRR4302536.1029235/1‑94 (MQ=60)

                                                                                CTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACGCTCCGGCACTGGCAAAG               <  SRR4302536.6430697/94‑1 (MQ=60)

                                                                                  TTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACGCTCCGGCACTGGCAAAGAT             <  SRR4302536.5650854/94‑1 (MQ=60)

                                                                                  TTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACGCTCCGGCACTGGCAAAGAT             <  SRR4302536.6365203/94‑1 (MQ=60)

                                                                                  TTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACGCTCCGGCACTGGCAAAGAT             <  SRR4302536.3594839/94‑1 (MQ=60)

                                                                                   TATGGCCCGCCTGATTGGATGGCCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGTCTGGCACGCTCCGGCACTGGCAAAGATG            <  SRR4302536.3014446/94‑1 (MQ=60)

                                                                                   TATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACGCTCCGGCACTGGCAAAGATG            <  SRR4302536.6799526/94‑1 (MQ=60)

                                                                                     TGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACGCTCCGGCACTGGCAAAGATGTG          <  SRR4302536.515688/94‑1 (MQ=60)

                                                                                     TGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACGCTCCGGCACTGGCAAAGATGTG          <  SRR4302536.327296/94‑1 (MQ=60)

                                                                                     TGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACGCTCCGGCACTGGCAAAGATGTG          <  SRR4302536.986686/94‑1 (MQ=60)

                                                                                      GGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACGCTCCGGCACTGGCAAAGATGTGG         >  SRR4302536.2417196/1‑94 (MQ=60)

                                                                                        GCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACGCTCCGGCACTGGCAAAGATGTGGCG       <  SRR4302536.1617654/94‑1 (MQ=60)

                                                                                        CCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACGCTCCGGCACTGGCAAAGATGTGGCG       <  SRR4302536.3598493/94‑1 (MQ=60)

                                                                                        CCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACGCTCCGGCACTGGCAAAGATGTGGCG       >  SRR4302536.3989379/1‑94 (MQ=60)

                                                                                        CCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGAACCCTCCGGCACTGGCAAAGATGTGGCG       >  SRR4302536.939883/1‑94 (MQ=60)

                                                                                         CCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACGCTCCGGCACTGGCAAAGATGTGGCGC      <  SRR4302536.4065205/94‑1 (MQ=60)

                                                                                          CGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACGCTCCGGCACTGGCAAAGATGTGGCGCG     >  SRR4302536.2885863/1‑94 (MQ=60)

                                                                                           GCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACGCTCCGGCACTGGCAAAGATGTGGCGCGA    <  SRR4302536.747249/94‑1 (MQ=60)

                                                                                             CGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACGCTCCGGCACTGGCAAAGATGTGGCGCGAAT  >  SRR4302536.4472762/1‑94 (MQ=60)

                                                                                             CGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACGCTCCGGCACTGGCAAAGATGTGGCGCGAAT  <  SRR4302536.895893/94‑1 (MQ=60)

                                                                                             CGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACGCTCCGGCACTGGCAAAGATGTGGCGCGAAT  >  SRR4302536.108355/1‑94 (MQ=60)

                                                                                             CGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACGCTCCGGCACTGGCAAAGATGTGGCGCGAAT  <  SRR4302536.5989747/94‑1 (MQ=60)

                                                                                             CGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACGCTCCGGCACTGGCAAAGATGTGGCGCGAAT  <  SRR4302536.4854479/94‑1 (MQ=60)

TTACCCTCTGCGCTGGCGCACTATTTTGCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCTGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACGCTCCGGCACTGGCAAAGATGTGGCGCGAAT  >  NC_000913/2204165‑2204351

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 6 ≤` `ATCG/ATCG` `< 31 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`