Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1475	266.7	13469680	98.2%	13227225	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,208,331	A→G	S404S (TCA→TCG)	b2122 →	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,208,331	0	A	G	99.5%	606.2 / NA	191	S404S (TCA→TCG)	b2122	hypothetical protein
Reads supporting (aligned to +/- strand): ref base A (0/0); major base G (74/116); minor base T (0/1); total (74/117)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 225 total aligned reads displayed.

CCGCGAAGTGAACAGGAAAACTCACCGGCAGCTACGCGTCGGCTGTTTAGTTTTCAGGCTGGCGCACTGGCGGGCGGGCAAATTGTTTCACAAGCAGCAAAACGCAGTGCCGATGGCGAGCTGCTGTTAGCTACCCGCAACCGCTTAAGCAGCGTTGTGCCGCTGTCGCCTGATGCCTG  >  NC_000913/2208242‑2208420

ccGCGAAGTGAACAGGAAAACTCACCGGCAGCTACGCGTCGGCTGTTTAGTTTTCAGGCTGGCGCACTGGCGGGCGGGCAAATTGTTTCGCaa                                                                                        <  1:6366048/93‑1 (MQ=255)

    gAAGTGAACAGGAAAACTCACCGGCAGCTACGCGTCGGCTGTTTAGTTTTCAGGCTGGCGCACTGGCGGGCGGGCAAATTGTTTCGCAagcag                                                                                    <  2:6257169/93‑1 (MQ=255)

    gAAGTGAACAGGAAAACTCACCGGCAGCTACGCGTCGGCTGTTTAGTTTTCAGGCTGGCGCACTGGCGGGCGGGCAAATTGTTTCGCAagcag                                                                                    <  2:2420148/93‑1 (MQ=255)

     aaGTGAACAGGAAAACTCACCGGCAGCTACGCGTCGGCTGTTTAGTTTTCAGGCTGGCGCACTGGCGGGCGGGGCAATTGTTTCGCAagcagc                                                                                   >  1:3122172/1‑93 (MQ=255)

        tGAACAGGAAAACTCACCGGCAGCTACGCGTCGGCTGTTTAGTTTTCAGGCTGGCGCACTGGCGGGCGGGCAAATTGTTTTGCCAGCAGCaaa                                                                                >  1:4217155/1‑93 (MQ=255)

         gAACAGGAAAACTCACCGGCAGCTACGCGTCGGCTGTTTAGTTTTCAGGCTGGCGCACTGGCGGGCGGGCAAATTGTTTCGCAAGCAGCaaaa                                                                               <  1:3726431/93‑1 (MQ=255)

         gAACAGGAAAACTCACCGGCAGCTACGCGTCGGCTGTTTAGTTTTCAGGCTGGCGCACTGGCGGGCGGGCAAATTGTTTCGCAAGCAGCaaaa                                                                               <  1:2228126/93‑1 (MQ=255)

          aaCAGGAAAACTCACCGGCAGCTACGCGTCGGCTGTTTAGTTTTCAGGCTGGCGCACTGGCGGGCGGGCAAATTGTTTCGCAAGCAGCAAAAc                                                                              <  2:1712353/93‑1 (MQ=255)

            cAGGAAAACTCACCGGCAGCTACGCGTCGGCTGTTTAGTTTTCAGGCTGGCGCACTGGCGGGCGGGCAAATTGTTTTGCCAGCAGCAAAACGc                                                                            >  2:1500050/1‑93 (MQ=255)

            cAGGAAAACTCACCGGCAGCTACGCGTCGGCTGTTTAGTTTTCAGGCTGGCGCACTGGCGGGCGGGCAAATTGTTTCGCAAGCAGCAAAAAGc                                                                            >  1:814929/1‑93 (MQ=255)

             aGGAAAACTCACCGGCAGCTACGCGTCGGCTGTTTAGTTTTCAGGCTGGCGCACTGGCGGGCGGGCAAATTGTTTCGCAAGCAGCAAAACGCa                                                                           <  2:2994895/93‑1 (MQ=255)

             aGGAAAACTCACCGGCAGCTACGCGTCGGCTGTTTAGTTTTCAGGCTGGCGCACTGGCGGGCGGGCAAATTGTTTCGCAAGCAGCAAAACGCa                                                                           <  2:5241145/93‑1 (MQ=255)

              ggAAAACTCACCGGCAGCTACGCGTCGGCTGTTTAGTTTTCAGGCTGGCGCACTGGCGGGGGGGGCAATTGTTTCGCAAACAGCAAAACGCAg                                                                          >  2:5457288/1‑93 (MQ=255)

              ggAAAACTCACCGGCAGCTACGCGTCGGCTGTTTAGTTTTCAGGCTGGCGCACTGGCGGGCGGGCCAATTGTTTTGCAAGGAGCAAAACGCac                                                                          >  2:5666647/1‑92 (MQ=255)

              ggAAAACTCACCGGCAGCTACGCGTCGGCTGTTTAGTTTTCAGGCTGGCGCACTGGCGGGCGGGCAAATTGTTTCGCAAGCAGCAAAACGCAg                                                                          <  2:3756860/93‑1 (MQ=255)

              ggAAAACTCACCGGCAGCTACGCGTCGGCTGTTTAGTTTTCAGGCTGGCGCACTGGCGGGCGGGCAAATTGTTTCGCAAGCAGCAAAACGCAg                                                                          >  2:4849438/1‑93 (MQ=255)

               gAAAACTCACCGGCAGCTACGCGTCGGCTGTTTAGATTTCAGGCTGGCGCACTGGCGGGCGGGCAAATTGTTTCGCAAGCAGCCAAACGccat                                                                         >  2:6203743/1‑90 (MQ=255)

                aaaaCTCACCGGCAGCTACGCGTCGGCTGTTTAGTTTTCAGGCTGGCGCACTGGCGGGGGGGCAAATTGTTTCGCAAGCAGCAAAAAGCAgcg                                                                        >  1:5177885/1‑91 (MQ=255)

                 aaaCTCACCGGCAGCTACGCGTCGGCTGTTTAGTTTTCAGGCTGGCGCACTGGCGGGCGGGCAAATTGTTTCGCAAGCAGCAAAACGCAGTGc                                                                       <  1:6544482/93‑1 (MQ=255)

                  aaCTCACCGGCAGCTACGCGTCGGCTGTTTAGTTTTCAGGCTGGCGCACTGGCGGGCGGGCAAATTGTTTCGCAAGAAGCAAAAAGCAGTGcc                                                                      >  2:1797531/1‑93 (MQ=255)

                     tCACCGGCAGCTACGCGTCGGCTGTTTAGTTTTCAGGCTGGCGCACTGGCGGGCGGGCAAATTGTTTCGCAAGCAGCAAAACGCAGTGCCGAt                                                                   >  2:32031/1‑93 (MQ=255)

                      cACCGGCAGCTACGCGTCGGCTGTTTAGTTTTCAGGCTGGCGCACTGGCGGGCGGGGCAATTGTTTCGGAAGCAGCAAAACGCAGGGCCGATg                                                                  >  1:2448732/1‑93 (MQ=255)

                      cACCGGCAGCTACGCGTCGGCTGTTTAGTTTTCAGGCTGGCGCACTGGCGGGCGGGCAAATTGTTTCGCAAGCAGCAAAACGCAGTGCCGATg                                                                  <  2:6198088/93‑1 (MQ=255)

                        ccGGCAGCTACGCGTCGGCTGTTTAGTTTTCAGGCTGGCGCACTGGCGGGCGGGCAAATTGTTTCGCAAGCAGCAAAACGCAGTGCCGATggg                                                                >  2:2899681/1‑92 (MQ=255)

                        ccGGCAGCTACGCGTCGGCTGTTTAGTTTTCAGGCTGGCGCACTGGCGGGCGGGCAAATTGTTTCGCAAGCAGCAAAACGCAGTGCCGATGGc                                                                <  1:1849996/93‑1 (MQ=255)

                        ccGGCAGCTACGCGTCGGCTGTTTAGTTTTCAGGCTGGCGCACTGGCGGGCGGGCAAATTGTTTCGCAAGCAGCAAAACGCAGTGCCGATGGc                                                                >  1:6579295/1‑93 (MQ=255)

                           gCAGCTACGCGTCGGCTGTTTAGTTTTCAGGCTGGCGCACTGGCGGGCGGGCAAATTGTTTCGCAAGCAGCAAAACGCAGGGCCGATGGCGAg                                                             >  1:3630067/1‑93 (MQ=255)

                            cAGCTACGCGTCGGCTGTTTAGTTTTCAGGCTGGCGCACTGGCGGGCGGGCAAATTGTTTCGCAAGCAGCAAAACGCAGTGCCGATGGCGAgc                                                            <  2:1426396/93‑1 (MQ=255)

                            cAGCTACGCGTCGGCTGTTTAGTTTTCAGGCTGGCGCACTGGCGGGCGGGCAAATTGTTTCGCAAGCAGCAAAACGCAGTGCCGATGGCGAgc                                                            <  1:676964/93‑1 (MQ=255)

                            cAGCTACGCGTCGGCTGTTTAGTTTTCAGGCTGGCGCACTGGCGGGCGGGCAAATTGTTTCGCAAGCAGCAAAACGCAGTGCCGATGGCGAgc                                                            <  2:2729414/93‑1 (MQ=255)

                            cAGCTACGCGTCGGCTGTTTAGTTTTCAGGCTGGCGCACTGGCGGGCGGGCAAATTGTTTCGCAAGCAGCAAAACGCAGTGCCGATGGCGAgc                                                            <  1:1294424/93‑1 (MQ=255)

                            cAGCTACGCGTCGGCTGTTTAGTTTTCAGGCTGGCGCACTGGCGGGCGGGCAAATTGTTTCGCAAGCAGCAAAACGCAGTGCCGATGGCGAgc                                                            <  2:3391739/93‑1 (MQ=255)

                            cAGCTACGCGTCGGCTGTTTAGTTTTCAGGCTGGCGCACTGGCGGGCGGGCAAATTGTTTCGCAAGCAGCAAAACGCAGTGCCGATGGCGAgc                                                            <  2:5167573/93‑1 (MQ=255)

                            cAGCTACGCGTCGGCTGTTTAGTTATCAGGCTGGCGCGCTGGCGGGCGGGCAAATTGTTTCGCAAGCAGCAAAACGCAGTGCCGATGGCGAgc                                                            <  2:6733668/93‑1 (MQ=255)

                             aGCTACGCGTCGGCTGTTTAGTTTTCAGGCTGGCGCACTGGCGGGCGGGCAAATTGTTTCGCAAGCAGCAAAACGCAGTGCCGATGGCGAgct                                                           <  1:1887753/93‑1 (MQ=255)

                             aGCTACGCGTCGGCTGTTTAGTTTTCAGGCTGGCGCACTGGCGGGCGGGCAAATTGTTTCGCAAGCAACAAAACACAGTGCCGATGGCGAgct                                                           >  1:3187674/1‑93 (MQ=255)

                              gCTACGCGTCGGCTGTTTAGTTTTCAGGCTGGCGCACTGGCGGGCGGGCAAATTGTTTCGCAAGCAGCAAAACGCAGTGCCGATGGCGAgctg                                                          >  2:1659955/1‑93 (MQ=255)

                              gCTACGCGTCGGCTGTTTAGATTTCAGGCTGGCGCACTGGCGGGCGGGCAAATTGTTTCGCAAGCAGCAAAACGCAGTGCCGATGGCGAgctg                                                          >  1:2688445/1‑93 (MQ=255)

                               cTACGCGTCGGCTGTTTAGTTTTCAGGCTGGCGCACTGGCGGGCGGGCAAATTGTTTCGCAAGCAGCAAAACGCAGTGCCGATGGCGAgctgc                                                         <  1:1968501/93‑1 (MQ=255)

                                   gcgTCGGCTGTTTAGTTTTCAGGCTGGCGCACTGGCGGGCGGGCAAATTGTTTCGCAAGCAGCAAAACGCAGTGCCGATGGCGAGCTGCTGtt                                                     >  2:6475825/1‑93 (MQ=255)

                                   gcgTCGGCTGTTTAGTTTTCAGGCTGGCGCACTGGCGGGCGGGCAAATTGTTTCGCAAGCAGCAAAACGCAGTGCCGATGGCGAGCTGCTGtt                                                     <  2:4714989/93‑1 (MQ=255)

                                   gcgTCGGCTGTTTAGTTTTCAGGCTGGCGCACTGGCGGGCGGGCAAATTGTTTCGCAAGCAGCAAAACGCAGTGCCGATGGCGAGCTGCTGtt                                                     <  2:5060530/93‑1 (MQ=255)

                                         gCTGTTTAGTTTTCAGGCTGGCGCACTGGCGGGCGGGCAAATTGTTTCGCAAGCAGCAAAACGCAGTGCCGATGGCGAGCTGCTGTTAGCTAc                                               >  2:3130951/1‑93 (MQ=255)

                                          cTGTTTAGTTTTCAGGCTGGCGCACTGGCGGGCGGGCAAATTGTTTCGCAAGCAGCAAAACGCAGTGCCGATGGCGAGCTGCTGTTAGCTAcc                                              <  2:2810479/93‑1 (MQ=255)

                                           tGTTTAGTTTTCAGGCTGGCGCACTGGCGGGCGGGCAAATTGTTTCGCAAGCAGCAAAACGCAGTGCCGATGGCGAGCTGCTGTTAGCTAccc                                             >  2:4158574/1‑93 (MQ=255)

                                           tGTTTAGTTTTCAGGCTGGCGCACTGGCGGGCGGGCAAATTGTTTCGCAAGCAGCAAAACGCAGTGCCGATGGCGAGCTGCTGTTAGCTAccc                                             <  2:5399774/93‑1 (MQ=255)

                                               tAGTTTTCAGGCTGGCGCACTGGCGGGCGGGCAAATTGTTTCGCAAGCAGCAAAACGCAGTGCCGATGGCGAGCTGCTGTTAGCTACCCGCaa                                         >  1:6030484/1‑93 (MQ=255)

                                                aGTTTTCAGGCTGGCGCACTGGCGGGCGGGCAAATTGTTTCGCAAGCAGCAAAACGCAGTGCCGATGGCGAGCTGCTGTTAGCTACCCGCAAc                                        <  1:3315660/93‑1 (MQ=255)

                                                 gTTTTCAGGCTGGCGCACTGGCGGGCGGGCAAATTGTTTCGCAAGCAGCAAAACGCAGTGCCGATGGCGAGCTGCTGTTAGCTACCCGCAAcc                                       >  1:4624211/1‑93 (MQ=255)

                                                   tttCAGGCTGGCGCACTGGCGGGCGGGCAAATTGTTTCGCAAGCAGCAAAACGCAGTGCCGATGGCGAGCTGCTGTTAGCTACCCGCAACCGc                                     <  1:5711795/93‑1 (MQ=255)

                                                    ttCAGGCTGGCGCACTCGCGGGCGGGCAAATTGTTTCGCAAGCAGCAAAACGCAGTGCCGATGGCGAGCTGCTGTTAGCTACCCGCCACCGCt                                    >  1:395447/1‑93 (MQ=255)

                                                       aGGCTGGCGCACTGGCGGGCGGGCAAATTGTTTTGCAAGCAGCAAAACGCAGTGCCGATGGCGAGCTGCTGTTAGCTACCCGCAACCGCTTaa                                 >  1:3897874/1‑93 (MQ=255)

                                                       aGGCTGGCGCACTGGCGGGCGGGCAAATTGTTTCGCAAGCAGCAAAACGCAGTGCCGATGGCGAGCTGCTGTTAGCTACCCGCAACCGCTTaa                                 <  1:5549125/93‑1 (MQ=255)

                                                       aGGCTGGCGCACTGGCGGGCGGGCAAATTGTTTCGCAAGCAGCAAAACGCAGTGCCGATGGCGAGCTGCTGTTAGCTACCCGCAACCGCTTaa                                 <  2:3285962/93‑1 (MQ=255)

                                                          gtGGCGCACTGGCGGGCGGGCAAATTGTTCCGCAAGCAGCAAAACGCAGTGCCGATGGCGAGCTGCTGTTAGCTACCCGCAACCGCTTAagca                              <  2:4037286/92‑1 (MQ=255)

                                                           tGGCGCACTGGCGGGCGGGCAAATTGTTTCGCAAGCAGCAAAACGCAGTGCCGATGGCGAGCTGCTGTTAGCTACCCGCAACCGCTTAagcag                             <  1:2379196/93‑1 (MQ=255)

                                                            ggCGCGCTGGCGGGCGGCCAAATGGTTTCGCAAGCAGCAAAACGCAGTGCCGATGGCGAGCTGCTGTTAGCTACCCGCAACCGCTTAagcagc                            <  1:3590641/93‑1 (MQ=255)

                                                            ggCGCACTGGCGGGCGGGCAAATTGTTTCGCAAGCAGCAAAACGCAGTGCCGATGGCGAGCTGCTGTTAGCTACCCGCAACCGCTTAagcagc                            <  1:5643168/93‑1 (MQ=255)

                                                            ggCGCACTGGCGGGCGGGCAAATTGTTTCGCAAGCAGCAAAACGCAGTGCCGATGGCGAGCTGCTGTTAGCTACCCGCAACCGCTTAagcagc                            <  1:1814280/93‑1 (MQ=255)

                                                              cgcACTGGCGGGCGGGCAAATTGTTTCGCAAGCAGCAAAACGCAGTGCCGATGGCGAGCTGCTGTTAGCTACCCGCAACCGCTTAAGCAGCGt                          <  1:5072541/93‑1 (MQ=255)

                                                               gcACTGGCGGGCGGGCAAATTGTTTCGCAAGCAGCAAAACGCAGTGCCGATGGCGAGCTGCTGTTAGCTACCCGCAACCGCTTAAGCAGCGtt                         >  2:1220787/1‑93 (MQ=255)

                                                               gcACTGGCGGGCGGGCAAATTGTTTCGCAAGCAGCAAAACGCAGTGCCGATGGCGAGCTGCTGTTAGCTACCCGCAACCGCTTAAGCAGCGtt                         <  2:1914808/93‑1 (MQ=255)

                                                               gcACTGGCGGGCGGGCAAATTGGTTCGCAAGGAGCAAAACGCAGTGCCGATGGCGAGCTGCGGATAGCTACCCGCAACCGCTTAAGCAGCGtt                         >  2:3969432/1‑93 (MQ=255)

                                                               gcACTGGCGGACGGGCAAATTGTTTCGCAAGCAGCAAAACGCAGTGCCGATGGCGAGCTGCTGTTAGCTACCCGCAACCGCTTAAGCAGCGtt                         <  1:1499915/93‑1 (MQ=255)

                                                                    ggcgggcgGGCAAATTGTTTCGCAAGCAGCAAAACGCAGTGCCGATGGCGAGCTGCTGTTAGCTACCCGCAACCGCTTAAGCAGCGTTGTGcc                    >  2:2079710/1‑93 (MQ=255)

                                                                    ggcgggcgGGCAAATTGTTTCGCAAGCAGCAAAACGCAGTGCCGATGGCGAGCTGCTGTTAGCTACCCGCAACCGCTTAAGCAGCGTTGTGcc                    <  1:260741/93‑1 (MQ=255)

                                                                    ggcgggcgGGCAAATTGTTTCGCAAGCAGCAAAACGCAGTGCCGATGGCGAGCTGCTGTTAGCTACCCGCAACCGCTTAAGCAGCGTTGTGcc                    <  2:3671143/93‑1 (MQ=255)

                                                                      cgggcgggCAAATTGTTTCGCAAGCAGCAAAACGCAGTGCCGATGGCGAGCTGCTGTTAGCTACCCGCAACCGCTTAAGCAGCGTTGTGCCGc                  <  1:6683422/93‑1 (MQ=255)

                                                                       gggcgggcAAATTGTTTCGCAAGCAGCAAAACGCAGTGCCGATGGCGAGCTGCTGTTAGCTACCCGCAACCGCTTAAGCAGCGTTGTGCCGCt                 <  2:872057/93‑1 (MQ=255)

                                                                       gggcgggcAAATTGTTTCGCAAGCAGCAAAACGCAGTGCCGATGGCGAGCTGCTGTTAGCTACCCGCAACCGCTTAAGCAGCGTTGTGCCGCt                 >  1:4409128/1‑93 (MQ=255)

                                                                        ggcgggcAAATTGTTTCGCAAGCAGCAAAACGCAGTGCCGATGGCGAGCTGCTGTTAGCTACCCGCAACCGCTTAAGCAGCGTTGTGCCGCTg                >  2:534291/1‑93 (MQ=255)

                                                                        ggcgggcAAATTGTTTCGCAAGCAGCAAAACGCAGTGCCGATGGCGAGCTGCTGTTAGCTACCCGCAACCGCTTAAGCAGCGTTGTGCCGCTg                >  1:4326218/1‑93 (MQ=255)

                                                                        ggcgggcAAATTGTTTCGCAAGCAGCAAAACGCAGTGCCGATGGCGAGCTGCTGTTAGCTACCCGCAACCGCTTAAGCAGCGTTGTGCCGCTg                >  2:400162/1‑93 (MQ=255)

                                                                          cgggcAAATTGTTTCGCAAGCAGCAAAACGCAGTGCCGATGGCGAGCTGCTGTTAGCTACCCGCAACCGCTTAAGCAGCGTTGTGCCGCTGTc              >  1:2016630/1‑93 (MQ=255)

                                                                          cgggcAAATTGTTTCGCAAGCAGCAAAACGCAGTGCCGATGGCGAGCTGCTGTTAGCTACCCGCAACCGCTTAAGCAGCGTTGTGCCGCTGTc              <  2:4778876/93‑1 (MQ=255)

                                                                           gggcAAATTGTTTCGCAAGCAGCAAAACGCAGTGCCGATGGCGAGCTGCTGTTAGCTACCCGCAACCGCTTAAGCAGCGTTGTGCCGCTGTCg             >  1:3565453/1‑93 (MQ=255)

                                                                            ggcAAATTGTTTCGCAAGCAGCAAAACGCAGTGCCGATGGCGAGCTGCTGTTAGCTACCCGCAACCGCTTAAGCAGCGTTGTGCCGCTGTCGc            >  2:3460528/1‑93 (MQ=255)

                                                                             gcAAATTGTTTCGCAAGCAGCAAAACGCAGTGCCGATGGCGAGCTGCTGTTAGCTACCCGCAACCGCTTAAGCAGCGTTGTGCCGCTGTCGcc           <  1:529480/93‑1 (MQ=255)

                                                                              cAAATTGTTTCGCAAGCAGCAAAACGCAGTGCCGATGGCGAGCTGCTGTTAGCTACCCGCAACCGCTTAAGCAGCGTTGTGCCGCTGTCGCCt          >  2:4393597/1‑93 (MQ=255)

                                                                              cAAATTGTTTCGCAAGCAGCAAAACGCAGTGCCGATGGCGAGCTGCTGTTAGCTACCCGCAACCGCTTAAGCAGCGTTGTGCCGCTGTCGCCt          >  2:2446441/1‑93 (MQ=255)

                                                                              cAAATTGTTTCGCAAGCAGCAAAACGCAGTGCCGATGGCGAGCTGCTGTTAGCTACCCGCAACCGCTTAAGCAGCGTTGTGCCGCTGTCGCCt          >  1:1054158/1‑93 (MQ=255)

                                                                              cAAATTGTTTCGCAAGCAGCAAAACGCAGTGCCGATGGCGAGCTGCTGTTAGCTACCCGCAACCGCTTAAGCAGCGTTGTGCCGCTGTCGCCt          <  2:2609936/93‑1 (MQ=255)

                                                                               aaaTTGTTTCGCAAGCAGCAAAACGCAGTGCCGATGGCGAGCTGCTGTTAGCTACCCGCAACCGCTTAAGCAGCGTTGTGCCGCTGTCGCCTg         >  2:5913636/1‑93 (MQ=255)

                                                                                aaTTGTTTCGCAAGCAGCAAAACGCAGTGCCGATGGCGAGCTGCTGTTAGCTACCCGCAACCGCTTAAGCAGCGTTGTGCCGCTGTCGCCTGa        >  1:4105215/1‑93 (MQ=255)

                                                                                aaTTGTTTCGCAAGCAGCAAAACGCAGTGCCGATGGCGAGCTGCTGTTAGCTACCCGCAACCGCTTAAGCAGCGTTGTGCCGCTGTCGCCTGa        >  1:6476680/1‑93 (MQ=255)

                                                                                aaTTGTTTCGCAAGCAGCAAAACGCAGTGCCGATGGCGAGCTGCTGTTAGCTACCCGCAACCGCTTAAGCAGCGTTGTGCCGCTGTCGCCTGa        <  1:6089598/93‑1 (MQ=255)

                                                                                 aTTGTTTCGCATGCAGCAAAACGCAGTGCCGATGGCGAGCTGCTGTTAGCTACCCGCAACCGCTTAAGCAGCGTTGTGCCGCTGTCGCCTGAt       <  1:898048/93‑1 (MQ=255)

                                                                                 aTTGTTTCGCAAGCAGCAAACCGCAGTGCCGATGGCGAGCTGCTGTTAGCTACCCGCAACCGCTTAAGCAGCGTTGTGCCGCTGTCGCCTGAt       <  1:1373035/93‑1 (MQ=255)

                                                                                 aTTGTTTCGCAAGCAGCAAAACGCAGTGCCGATGGCGAGCTGCTGTTAGCTACCCGCAACCGCTTAAGCAGCGTTGTGCCGCTGTCGCCTGAt       >  1:6210282/1‑93 (MQ=255)

                                                                                 aTTGTTTCGCAAGCAGCAAAACGCAGTGCCGATGGCGAGCTGCTGTTAGCTACCCGCAACCGCTTAAGCAGCGTTGTGCCGCTGTCGCCTGAt       <  1:6109064/93‑1 (MQ=255)

                                                                                 aTTGTTTCGCAAGCAGCAAAACGCAGTGCCGATGGCGAGCTGCTGTTAGCTACCCGCAACCGCTTAAGCAGCGTTGTGCCGCTGTCGCCTGAt       <  2:5559932/93‑1 (MQ=255)

                                                                                  ttGTTTCGCAAGCAGCAAAACGCAGTGCCGATGGCGAGCTGCTGTTAGCTACCCGCAACCGCTTAAGCAGCGTTGTGCCGCTGTCGCCTGATg      >  1:3249997/1‑93 (MQ=255)

                                                                                  ttGTTTCGCAAGCAGCAAAACGCAGTGCCGATGGCGAGCTGCTGTTAGCTACCCGCAACCGCTTAAGCAGCGTTGTGCCGCTGTCGCCTGATg      >  1:2640291/1‑93 (MQ=255)

                                                                                  ttGTTTCGCAAGCAGCAAAACGCAGTGCCGATGGCGAGCTGCTGTTAGCTACCCGCAACCGCTTAAGCAGCGTTGTGCCGCTGTCGCCTGATg      >  2:2520376/1‑93 (MQ=255)

                                                                                  ttGTTTCGCAAGCAGCAAAACGCAGTGCCGATGGCGAGCTGCTGTTAGCTACCCGCAACCGCTTAAGCAGCGTTGTGCCGCTGTCGCCTGATg      >  1:5489093/1‑93 (MQ=255)

                                                                                   tGTTTCGCAAGCAGCAAAACGCAGTGCCGATGGCGAGCTGCTGTTAGCTCCCCGCAACCGCTTAAGCAGCGTTGTGCCGCTGTCGCCTGATGc     <  1:4919/93‑1 (MQ=255)

                                                                                   tGTTTCGCAAGCAGCAAAACGCAGTGCCGATGGCGAGCTGCTGTTAGCTACCCGCAACCGCTTAAGCAGCGTTGTGCCGCTGTCGCCTGATGc     >  2:667228/1‑93 (MQ=255)

                                                                                    gTTTCGCAAGCAGCAAAACGCAGTGCCGATGGCGAGCTGCTGTTAGCTACCCGCAACCGCTTAAGCAGCGTTGTGCCGCTGTCGCCTGATGcc    <  2:1329250/93‑1 (MQ=255)

                                                                                     tttCGCAAGCAGCAAAACGCAGTGCCGATGGCGAGCTGCTGTTAGCTACCCGCAACCGCTTAAGCAGCGTTGTGCCGCTGTCGCCTGATGCCt   <  1:2722446/93‑1 (MQ=255)

                                                                                      ttCGCAAGCAGCAAAACGCAGTGCCGATGGCGAGCTGCTGTTAGCTACCCGCAACCGCTTAAGCAGCGTTGTGCCGCTGTCGCCTGATGCCTg  <  1:5827387/93‑1 (MQ=255)

CCGCGAAGTGAACAGGAAAACTCACCGGCAGCTACGCGTCGGCTGTTTAGTTTTCAGGCTGGCGCACTGGCGGGCGGGCAAATTGTTTCACAAGCAGCAAAACGCAGTGCCGATGGCGAGCTGCTGTTAGCTACCCGCAACCGCTTAAGCAGCGTTGTGCCGCTGTCGCCTGATGCCTG  >  NC_000913/2208242‑2208420

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 18 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

TTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCTACGCGTCGGCTGTTTAGTTTTCAGGCTGGCGCACTGGCGGGCGGGCAAATTGTTTCACAAGCAGCAAAACGCAGTGCCGATGGCGAGCTGCTGTTAGCTACCCGCAACCGCTTAAGCAGCGTTGTGCCGCTGTCGCCTGATGCCTGGCA  >  NC_000913/2208238‑2208423

TTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCTACGCGTCGGCTGTTTAGTTTTCAGGCTGGCGCACTGGCGGGCGGGCAAATTGTTTCG                                                                                              <  SRR4302536.4588824/94‑1 (MQ=60)

    CCGCGAAGTGAACAGGAAAACTCACCGGCAGCTACGCGTCGGCTGTTTAGTTTTCAGGCTGGCGCACTGGCGGGCGGGCAAATTGTTTCGCAAG                                                                                          <  SRR4302536.1260683/94‑1 (MQ=60)

    CCGCGAAGTGAACAGGAAAACTCACCGGCAGCTACGCGTCGGCTGTTTAGTTTTCAGGCTGGCGCACTGGCGGGCGGGCAAATTGTTTCGCAAG                                                                                          <  SRR4302536.6555738/94‑1 (MQ=60)

        GAAGTGAACAGGAAAACTCACCGGCAGCTACGCGTCGGCTGTTTAGTTTTCAGGCTGGCGCACTGGCGGGCGGGGCAATTGTTTCGCAAGCAGC                                                                                      >  SRR4302536.3213387/1‑94 (MQ=60)

         AAGTGAACAAGAAAACTCACCGGCAGCTACGCGTCGGCTGTTTAGTTTTCAGGCTGGCGCACTGGCGGGCGGGCAAATTGTTTCGCAAGCAGCA                                                                                     >  SRR4302536.6746693/1‑94 (MQ=60)

           GTGAACAGGAAAACTCACCGGCAGCTACGCGTCGGCTGTTTAGTTTTCAGGCTGGCGCACTGGCGGGGGGGCAAATTGGTTCGCCAACAGCAAA                                                                                   >  SRR4302536.5668119/1‑94 (MQ=60)

           GTGAACAGGAAAACTCACCGGCAGCTACGCGTCGGCTGTTTAGTTTTCAGGCTGGCGCACTGGCGGGCGGGCCAATTGTTTTGCAAGCAGCAAA                                                                                   >  SRR4302536.5878523/1‑94 (MQ=60)

           GTGAACAGGAAAACTCACCGGCAGCTACGCGTCGGCTGTTTAGTTTTCAGGCTGGCGCACTGGCGGGCGGGCAAATTGTTTTGCCAGCAGCAAA                                                                                   >  SRR4302536.4342587/1‑94 (MQ=60)

            TGAACAGGAAAACTCACCGGCAGCTACGCGTCGGCTGTTTAGTTTTCAGGCTGGCGCACTGGCGGGCGGGCAAATTGTTTCGCAAGCAGCAAAA                                                                                  <  SRR4302536.5910755/94‑1 (MQ=60)

             GAACAGGAAAACTCACCGGCAGCTACGCGTCGGCTGTTTAGTTTTCAGGCTGGCGCACTGGCGGTGGGGCAAATTGGTTCGCAAACAGCAAAAC                                                                                 >  SRR4302536.1568186/1‑94 (MQ=60)

             GAACAGGAAAACTCACCGGCAGCTACGCGTCGGCTGTTTAGTTTTCAGGCTGGCGCACTGGCGGGCGGGCAAATTGTTTCGCAAGCAGCAAAAC                                                                                 <  SRR4302536.2295509/94‑1 (MQ=60)

             GAACAGGAAAACTCACCGGCAGCTACGCGTCGGCTGTTTAGTTTTCAGGCTGGCGCACTGGCGGGCGGGCAAATTGTTTCGCAAGCAGCAAAAC                                                                                 <  SRR4302536.3837821/94‑1 (MQ=60)

             GAACAGGAAAACTCACCGGCAGCTACGCGTCGGCTGTTTAGTTTTCAGGCTGGCGCACTGGCGGGCGGGCAAATTGTTTCGCAAGCAGCAAAAC                                                                                 <  SRR4302536.5023403/94‑1 (MQ=60)

              AACAGGAAAACTCACCGGCAGCTACGCGTCGGCTGTTTAGTTTTCAGGCTGGCGCACTGGCGGGCGGGCAAATTGTTTCGCAAGCAGCAAAACG                                                                                <  SRR4302536.3777483/94‑1 (MQ=60)

               ACAGGAAAACTCACCGGCAGCTACGCGTCGGCTGTTTAGTTTTCAGGCTGGCGCACTGGCGGGGCGGGAAATTGTTTCGCAAGCAGCAAAAaac                                                                               >  SRR4302536.411604/1‑91 (MQ=60)

               ACAGGAAAACTCACCGGCAGCTACGCGTCGGCTGTTTAGTTTTCAGGCTGGCGCACTGGCGGGCGGGCAAATTGTTTCGCAAGCAGCAAAAAGC                                                                               >  SRR4302536.838844/1‑94 (MQ=60)

                 AGGAAAACTCACCGGCAGCTACGCGTCGGCTGTTTAGTTTTCAGGCTGGCGCACTGGCGGGCGGGCAAATTGTTTCGCAAGCAGCAAAACGCAG                                                                             <  SRR4302536.4561367/94‑1 (MQ=60)

                 AGGAAAACTCACCGGCAGCTACGCGTCGGCTGTTTAGTTTTCAGGCTGGCGCACTGGCGGGCGGGCAAATTGTTTCGCAAGCAGCAAAACGCAG                                                                             <  SRR4302536.2744740/94‑1 (MQ=60)

                  GGAAAACTCACCGGCAGCTACGCGTCGGCTGTTTAGTTTTCAGGCTGGCGCACTGGCGGGCGGGCAAATTGTTTCGCAAGCAGCAAAACGCAGT                                                                            <  SRR4302536.3255023/94‑1 (MQ=60)

                   GAAAACTCACCGGCAGCTACGCGTCGGCTGTTTAGTTTTCAGGCTGGCGCACTGGCGGGGGGGCAAATTGTTTCGCAAGCAGCAAAAAGCAGCG                                                                           >  SRR4302536.5332352/1‑94 (MQ=60)

                   GAAAACTCACCGGCAGCTACGCGTCGGCTGTTTAGTTTTCAGGCTGGCGCACTGGCGGGCGGGCAAATTGTTTCGCAAGCAGCAAAACGCAGTG                                                                           <  SRR4302536.21289/94‑1 (MQ=60)

                   GAAAACTCACCGGAAGCTAGGCGTCGGCTGTTTAGTTTTCAGGCTGGCGCACTGGCGGGCGGGCAAATTGTTTCGCAAGCAGCAAAACGCAGTG                                                                           <  SRR4302536.1912095/94‑1 (MQ=60)

                    AAAACTCACCGGCAGCTACGCGTCGGCTGTTTAGTTTTCAGGCTGGCGCACTGTCGGGCGGGCCAATTGGTTTGCAAGCAGCAAAACGCAGAGC                                                                          >  SRR4302536.5478432/1‑94 (MQ=60)

                    AAAACTCACCGGCAGCTACGCGTCGGCTGTTTAGTTTTCAGGCTGGCGCACTGGCGGGCGGGCAAATTGTTTCGCAAGCAGCAAAACGCAGTGC                                                                          >  SRR4302536.3681761/1‑94 (MQ=60)

                    AAAACTCACCGGCAGCTACGCGTCGGCTGTTTAGTTTTCAGGCTGGCGCACTGGCGGGCGGGCAAATTGTTTCGCAAGCAGCAAAACGCAGTGC                                                                          <  SRR4302536.1405346/94‑1 (MQ=60)

                     AAACTCACCGGCAGCTACGCGTCGGCTGTTTAGTTTTCAGGCTGGCGCACTGGCGGGCGGGGAAATTGGTTCGCAAGCAGCAAAAAGCAGTGCC                                                                         >  SRR4302536.2529740/1‑94 (MQ=60)

                     AAACTCACCGGCAGCTACGCGTCGGCTGTTTAGTTTTCAGGCTGGCGCACTGGCGGGCGGGCAAATTGTTTCGCAAGCAGCAAAACGCAGTGCC                                                                         >  SRR4302536.856571/1‑94 (MQ=60)

                     AAACTCACCGGCAGCTACGCGTCGGCTGTTTAGTTTTCAGGCTGGCGCACTGGCGGGCGGGCAAATTGTTTCGCAAGCAGCAAAACGCAGTGCC                                                                         <  SRR4302536.6739372/94‑1 (MQ=60)

                     AAACTCACCGGCAGCTACGCGTCGGCTGTTTAGTTTTCAGGCTGGCGCACTGGCGGGCGGGCAAATTGTTTCGCAAACAGCAAAACGCAGTGCC                                                                         >  SRR4302536.3424612/1‑94 (MQ=60)

                      AACTCACCGGCAGCTACGCGTCGGCTGTTTAGTTTTCAGGCTGGCGCACTGGCGGGCGGGCAAATTGTTTCGCAAGCAGCAAAACGCAGTGCCG                                                                        <  SRR4302536.6896218/94‑1 (MQ=60)

                      AACTCACCGGCAGCTACGCGTCGGCTGTTTAGTTTTCAGGCTGGCGCACTGGCGGGCGGGCAAATTGATTCGCAAGCAGCAAAACGCAGTGCCG                                                                        <  SRR4302536.5422528/94‑1 (MQ=60)

                       ACTCACCGGCAGCTACGCGTCGGCTGTTTAGTTTTCAGGCTGGCGCACTGGCGGGCGGGGAAATTGTTTCGCAAGCAGCAAAACcgaggtccgg                                                                       >  SRR4302536.2601345/1‑84 (MQ=60)

                       ACTCACCGGCAGCTACGCGTCGGCTGTTTAGTTTTCAGGCTGGCGCACTGGCGGGCGGGCAAATTGTTTCGCAAGCAGCAAAACGCAGTGCCGA                                                                       <  SRR4302536.2906681/94‑1 (MQ=60)

                        CTCACCGGCAGCTACGCGTCGGCTGTTTAGTTTTCAGGCTGGCGCACTGGCGGGGGGGCCAATTGTTTCGCAAGCCGCAAAAAACAATGCCGAT                                                                      >  SRR4302536.612881/1‑94 (MQ=60)

                         TCACCGGCAGCTACGCGTCGGCTGTTTAGTTTTCAGGCTGGCGCACTGGCGGGCGGGGCAATTGTTTCGGAAGCAGCAAAACGCAGGGCCGATG                                                                     >  SRR4302536.2522710/1‑94 (MQ=60)

                         TCACCGGCAGCTACGCGTCGGCTGTTTAGTTTTCAGGCTGGCGCACTGGCGGGCGGGCAAATTGTTTCGCAAGCAGCAAAACGCAGTGCCGATG                                                                     <  SRR4302536.3949618/94‑1 (MQ=60)

                          CACCGGCAGCTACGGGTCGGCTGGTTAGTTTTCAGGCTGGCGCACTGGCGGGCGGGCAAATTGTTTCGCAAGCAGCAAAACGCAGTGCCGATGG                                                                    <  SRR4302536.4404297/94‑1 (MQ=60)

                           CCCGGCAGCTACGCGTCGGCTGTTTAGTTTTCAGGCTGGCGCACTGGCGGGCGGGCAAATTGTTTCGCAAGCAGCAAAACGCAGTGCCGATGGC                                                                   <  SRR4302536.6273728/94‑1 (MQ=60)

                           ACCGGCAGCTACGCGTCGGCTGTTTAGTTTTCAGGCTGGCGCACTGGCGGGCGGGCAAATTGTTTCGCAAGCAGCAAAACGCAGTGCCGATGGC                                                                   >  SRR4302536.6775076/1‑94 (MQ=60)

                            CCGGCAGCTACGCGTCGGCTGTTTAGTTTTCAGGCTGGCGCACTGGCGGGCGGGCAAATTGTTTCGCAAGCAGCAAAACGCAGTGCCGATGGCG                                                                  <  SRR4302536.1905751/94‑1 (MQ=60)

                              GGCAGCTACGCGTCGGCTGTTTAGTTTTCAGGCTGGCGCACTGGCGGGCGGGCAAATTGTTTCGCAAGCAGCAAAACGCAGGGCCGATGGCGAG                                                                >  SRR4302536.3738637/1‑94 (MQ=60)

                                CAGCTACGCGTCGGCTGTTTAGTTTTCAGGCTGGCGCACTGGCGGGCGGGCAAATTGTTTCGCAAGCAGCAAAACGCAGTGCCGATGGCGAGCT                                                              <  SRR4302536.1333123/94‑1 (MQ=60)

                                CAGCTACGCGTCGGCTGTTTAGTTTTCAGGCTGGCGCACTGGCGGGCGGGCAAATTGTTTCGCAAGCAGCAAAACGCAGTGCCGATGGCGAGCT                                                              <  SRR4302536.696776/94‑1 (MQ=60)

                                CAGCTACGCGTCGGCTGTTTAGTTTTCAGGCTGGCGCACTGGCGGGCGGGCAAATTGTTTCGCAAGCAACAAAACACAGTGCCGATGGCGAGCT                                                              >  SRR4302536.3281133/1‑94 (MQ=60)

                                 AGCTGCGCGTCGCCTGTCTAGTTTACAGCATGGCGCACTGGCGGACGGGCAATGTGTTTCGCAAGCAGCAAAACGCAGTGCCGATGGCGAGCTG                                                             <  SRR4302536.801729/94‑1 (MQ=42)

                                 AGCTACGCGTCGGCTGTTTAGTTTTCAGGCTGGCGCACTGGCGGGCGGGCAAATTGTTTCGCAAGCAGCAAAACGCAGTGCCGATGGCGAGCTG                                                             <  SRR4302536.6134977/94‑1 (MQ=60)

                                 AGCTACGCGTCGGCTGTTTAGTTTTCAGGCTGGCGCACTGGCGGGCGGGCAAATTGTTTCGCAAGCAGCAAAACGCAGTGCCGATGGCGAGCTG                                                             <  SRR4302536.1944532/94‑1 (MQ=60)

                                 AGCTACGCGTCGGCTGTTTAGTTTTCAGGCTGGCGCACTGGCGGGCGGGCAAAATGTTTTGCAAGCAGCAAAAAGCAATGCCCATGGCGAGCTG                                                             >  SRR4302536.3670033/1‑94 (MQ=60)

                                 AGCTACGCGTCGGCTGTTTAGATTTCAGGCTGGCGCACTGGCGGGCGGGCAAATTGTTTCGCAAGCAGCAAAACGCAGTGCCGATGGCGAGCTG                                                             >  SRR4302536.2768712/1‑94 (MQ=60)

                                   CTACGCGTCGGCTGTTTAGTTTTCAGGCTGGCGCACTGGCGGGCGGGCAAATTGTTTCGCAAGCAGCAAAACGCAGTGCCGATGGCGAGCTGCT                                                           <  SRR4302536.2027694/94‑1 (MQ=60)

                                   CTACGCGTCGGCTGTTTAGTTTTCAGGCTGGCGCACTGGCGGGCGGGCAAATTGTTTCGCAAGCAGCAAAACGCAGTGCCGATGGCGAGCTGCT                                                           <  SRR4302536.1713877/94‑1 (MQ=60)

                                          TCGGCTGTTTAGTTTTCAGGCTGGCGCACTGGCGGGCGGGCAAATTGTTTCGCAAGCAGCAAAACGCAGTGCCGATGGCGAGCTGCTGTTAGCT                                                    >  SRR4302536.2429131/1‑94 (MQ=60)

                                          TCGGCTGTTTAGTTTTCAGGCTGGCCCACTGGCGGGCGGGCACATTGTTTCGCAAGCCGCACAACGCAGTGCCGATGGCGAGCTGCTGTTAGCT                                                    >  SRR4302536.2346632/1‑94 (MQ=60)

                                             GCTGTTTAGTTTTCAGGCTGGCGCACTGGCGGGCGGGCAAATTGTTTCGCAAGCAGCAAAACGCAGTGCCGATGGCGAGCTGCTGTTAGCTACC                                                 >  SRR4302536.5703888/1‑94 (MQ=60)

                                              CTGTTTGGTTTTCAGGCTGGCGCACTGGCGGGCGGGCAAATTGTTTCGCAAGCAGCAAAACGCAGTGCCGATGGCGAGCTGCTGTTAGCTACCC                                                <  SRR4302536.447548/94‑1 (MQ=60)

                                              CTGTTTAGTTTTCAGGCTGGCGCACTGGCGGGCGGGCAAATTGTTTCGCAAGCAGCAAAACGCAGTGCCGATGGCGAGCTGCTGTTAGCTACCC                                                <  SRR4302536.6262893/94‑1 (MQ=60)

                                              CTGTTTAGTTTTCAGGCTGGCGCACTGGCGGGCGGGCAAATTGTTTCGCAAGCAGCAAAACGCAGTGCCGATGGCGAGCTGCTGTTAGCTACCC                                                >  SRR4302536.6777973/1‑94 (MQ=60)

                                               TGTTTAGTTTTCAGGCTGGCGCACTGGCGGGCGGGGAAATTGGTTTGCAAGCAGCAAAAAGCAGTGCCGATGGCGAGCTGCTGTTAGCTACCCG                                               >  SRR4302536.2702057/1‑94 (MQ=60)

                                                GTTTAGTTTTCAGGCTGGCGCACTGGCGGGCGGGCAAATTGTTTCGCAAGCAGCCAAACGCAGTGCCGATGGCGAGCTGCTGTTAGCTACCCGC                                              >  SRR4302536.6678631/1‑94 (MQ=60)

                                                GTTTAGTTTTCAGGCTGGCGCACTGGCGGGCGGGCAAATTGTTTCGCAAGCAGCAAAACGCAGTGCCGATGGCGAGCTGCTGTTAGCTACCCGC                                              >  SRR4302536.637152/1‑94 (MQ=60)

                                                  TTAGTTTTCAGGCTGGCGCACTGGCGGGCGGGCAAATTGTTTCGCAAGCAGCAAAACGCAGTGCCGATGGCGAGCTGCTGTTAGCTACCCGCAA                                            >  SRR4302536.6210299/1‑94 (MQ=60)

                                                   TAGTTTTCAGGCTGGCGCACTGGCGGGGGGGCAAATTGTTTCGCAAGCAGCAAAACGCAGTGCCGATGGCGAGCTGCTGTTAGCTACCCGGAAC                                           >  SRR4302536.6424913/1‑94 (MQ=60)

                                                    AGTTTTCAGGCTGGCGCACTGGCGGGCGGGCAAATTGTTTCGCAAGCAGCAAAACGCAGTGCCGATGGCGAGCTGCTGTTAGCTACCCGCAACC                                          >  SRR4302536.4763174/1‑94 (MQ=60)

                                                    AGTTTTCAGGCTGGCGCACTGGCGGGCGGGCAAATTGTTTCGCAAGCAGCAAAACGCAGTGCCGATGGCGAGCTGCTGTTAGCTACCCGCAACC                                          <  SRR4302536.6423335/94‑1 (MQ=60)

                                                    AGTTTTCAGGCTGGCGCACTGGCGGGCGGGCAAATTGTTTCGCAAGCAGCAAAACGCAGTGCCGATGGCGAGCTGCTGTTAGCTACCCGCAACC                                          <  SRR4302536.3413675/94‑1 (MQ=60)

                                                     GTTTTCAGGCTGGCGGACTGGCGGGCGGGCAAATTGTTTCGCAAGCAGCAAAACGCAGTGCCGATGGCGAGCTGCTGTTAGCTACCCGCAACCG                                         <  SRR4302536.3180080/94‑1 (MQ=60)

                                                       TTTCAGGCTGGCGCACTGGCGGGCGGGCAAATTGTTTCGCAAGCAGCAAAACGCAGTGCCGATGGCGAGCTGCTGTTAGCTACCCGCAACCGCT                                       <  SRR4302536.5881661/94‑1 (MQ=60)

                                                       TTTCAGGCTGGCGCACTCGCGGGCGGGCAAATTGTTTCGCAAGCAGCAAAACGCAGTGCCGATGGCGAGCTGCTGTTAGCTACCCGCCACCGCT                                       >  SRR4302536.405903/1‑94 (MQ=60)

                                                        TTCAGGCTGGCGCACTGGCGGGCGGGGAAATTGGTTTGCAAGCAGCAAAACGCAGTGCCGATGGCGAGCTGCGGGTAGCTACCCGCAACCGCTT                                      >  SRR4302536.1187061/1‑94 (MQ=60)

                                                        TTCAGGCTGGCGCACTGGCGGGCGGGCGAATTGTTTCGCAAGCAGCAAAACGCAGTGCCGATGGCGAGCTGCTGTTAGCTACCCGCAACCGCTT                                      >  SRR4302536.5759062/1‑94 (MQ=60)

                                                          CAGGCTGGCGCACTGGCGGGCGGGCAAATTGTTTTGCAAGCAGCAAAACGCAGTGCCGATGGCGAGCTGCTGTTAGCTACCCGCAACCGCTTAA                                    >  SRR4302536.4013762/1‑94 (MQ=60)

                                                           AGGCTGGCGCACTGGCGGGCGGGCAAATTGTTTCGCAAGCAGCAAAACGCAGTGCCGATGGCGAGCTGCTGTTAGCTACCCGCAACCGCTTAAG                                   <  SRR4302536.4068400/94‑1 (MQ=60)

                                                           AGGCTGGCGCACTGGCGGGCGGGCAAATTGTTTCGCAAGCAGCAAAACGCAGTGCCGATGGCGAGCTGCTGTTAGCTACCCGCAACCGCTTAAG                                   <  SRR4302536.5714439/94‑1 (MQ=60)

                                                            GGCTGGCGCACTGGCGGGCGGGCAAATTGTTTCGCAAGGAGCAAAACGCAGTGGCGGTTGCGAGCTGCTGTTAGCTACCCGCAAACGCTTAAGC                                  >  SRR4302536.3375543/1‑94 (MQ=60)

                                                              CTGGCGCACTGGCGGGCGGGCAAATTGTTTCGCAAGCATCAAAATGCAGTGCCGATTGCGAGCTGCTGTTAGCTACCCGCCACCGCTTAAGTAG                                >  SRR4302536.4034465/1‑94 (MQ=60)

                                                               TGGCGCACTGGCGGGCGGGCAAATTGTTTCGCAAGCAGCAAAACGCAGTGCCGATGGCGAGCTGCTGTTAGCTACCCGCAACCGCTTAAGCAGC                               <  SRR4302536.2451273/94‑1 (MQ=60)

                                                               TGGCGCACTGGCGGGCGGGCAAATTGTTTCGCAAACAGCAAAACGCAGTGCCGATGGCGAGCTGCTGTTAGCCACCCGCAACCGCATAAGCAGC                               >  SRR4302536.5887140/1‑94 (MQ=60)

                                                                GGCGCGCTGGCGGGCGGCCAAATGGTTTCGCAAGCAGCAAAACGCAGTGCCGATGGCGAGCTGCTGTTAGCTACCCGCAACCGCTTAAGCAGCG                              <  SRR4302536.3698050/94‑1 (MQ=60)

                                                                GGCGCACTGGCGGGCGGGCAAATTGTTTCGCAAGCAGCAAAACGCAGTGCCGATGGCGAGCTGCTGTTAGCTACCCGCAACCGCTTAAGCAGCG                              <  SRR4302536.5810825/94‑1 (MQ=60)

                                                                GGCGCACTGGCGGGCGGGCAAATTGTTTCGCAAGCAGCAAAACGCAGTGCCGATGGCGAGCTGCTGTTAGCTACCCGCAACCGCTTAAGCAGCG                              <  SRR4302536.1869015/94‑1 (MQ=60)

                                                                  CGCACTGGCGGGCGGGCAAATTGTTTCGCAAGCAGCAAAACGCAGTGCCGATGGCGAGCTGCTGTTAGCTACCCGCAACCGCTTAAGCAGCGTT                            <  SRR4302536.5224401/94‑1 (MQ=60)

                                                                  CGCACTGGCGGGCGGGCAAATTGTTTCGCAAGCAGCAAAACGCAGTGCCGATGGCGAGCTGCTGTTAGCTACCCGCAACCGCTTAAGCAGCGTT                            <  SRR4302536.2779960/94‑1 (MQ=60)

                                                                   GCACTGGCGGGCGGGCAAATTTTTTCGCAAGCAGGAAAACGCAGTGGCGATGGCGAGCTGCTGTTAGCTACCCGCAACCGCTTAAGCCGCGTTG                           >  SRR4302536.2889884/1‑94 (MQ=60)

                                                                   GCACTGGCGGGCGGGCAAATTGTTTCGCAAGCAGCAAAACGCAGTGCCGATGGCGAGCTGCTGTTAGCTACCCGCAACCGCTTAAGCAGCGTTG                           <  SRR4302536.2659774/94‑1 (MQ=60)

                                                                   GCACTGGCGGACGGGCAAATTGTTTCGCAAGCAGCAAAACGCAGTGCCGATGGCGAGCTGCTGTTAGCTACCCGCAACCGCTTAAGCAGCGTTG                           <  SRR4302536.1544170/94‑1 (MQ=60)

                                                                     ACTGGCGGGCGGGCAAATTGTTTCGCAAGCAGCAAAACGCAGTGCCGATGGCGAGCTGCTGTTAGCTACCCGCAACCGCTTAAGCAGCGTTGTG                         <  SRR4302536.5257056/94‑1 (MQ=60)

                                                                     ACTGGCGGGCGGGCAAATTGTTTCGCAAGCAGCAAAACGCAGTGCCCATGGCGAGCTGCTGTTAGCTACCCGCAACCGCTTAAGCAGCGTTGGG                         >  SRR4302536.4951334/1‑94 (MQ=60)

                                                                      CTGGCGGGCGGGCAAATTGTTTCGCAAGCAGCAAAACGCAGTGCCGATGGCGAGCTGCTGTTAGCTACCCGCAACCGCTTAAGCAGCGTTGTGC                        >  SRR4302536.2499186/1‑94 (MQ=60)

                                                                      CTGGCGGGCGGGCAAATTGTTTCGCAAGCAGCAAAACGCAGTGCCGATGGCGAGCTGCTGTTAGCTACCCGCAACCGCTTAAGAAGCGTTGTGC                        >  SRR4302536.1805825/1‑94 (MQ=60)

                                                                       TGGCGGGCGGGCAAATTGTTTCGCAAGCAGCAAAACGCAGTGCCGATGGCGAGCTGCTGTTAGCTACCCGCAACCGCTTAAGCAGCGTTGTGCC                       >  SRR4302536.6797597/1‑94 (MQ=60)

                                                                        GGCGGGCGGGCAAATTGTTTCGCAAGCAGCAAAACGCAGTGCCGATGGCGAGCTGCTGTTAGCTACCCGCAACCGCTTAAGCAGCGTTGTGCCG                      <  SRR4302536.267699/94‑1 (MQ=60)

                                                                         GCGGGCGGGCAAATTGTTTCGCAAGCAGCAAAACGCAGTGCCGATGGCGAGCTGCTGTTAGCTACCCGCAACCGCTTAAGCAGCGGTGTGCCGC                     >  SRR4302536.205379/1‑94 (MQ=60)

                                                                          CGGGCGGTCAAATTGTTTCGCAAGCAGCAAAACGCAGTGCCGATGGCGAGCTGCTGTTAGCTACCCGCAACCGCTTAAGCAGCGTTGTGCCGCT                    <  SRR4302536.5180229/94‑1 (MQ=60)

                                                                          CGGGCGGGCAAATTGTTTCGCAAGCAGCAAAACGCAGTGCCGATGGCGAGCTGCTGTTAGCTACCCGCAACCGCTTAAGCAGCGTTGTGCCGCT                    <  SRR4302536.6881938/94‑1 (MQ=60)

                                                                          CGGGCGGGCAAATTGTTTCGCAAGCAGCAAAACGCAGTGCCGATGGCGAGCTGCTGTTAGCTACCCGCAACCGCTTAAGCAGCGTTGTGCCGCT                    >  SRR4302536.4541028/1‑94 (MQ=60)

                                                                           GGGCGGGCAAATTGTTTCGCAAGCAGCAAAACGCAGTGCCGATGGCGAGCTGCTGTTAGCTACCCGCAACCGCTTAAGCAGCGTTGTGCCGCTG                   >  SRR4302536.4455763/1‑94 (MQ=60)

                                                                            GGCGGGCAAATTGTTTCGCAAGCAGCAAAACGCAGTGCCGATGGCGAGCTGCTGTTAGCTACCCGCACCCGCTTAAGCAGCGTTGTGCCGCTGT                  <  SRR4302536.705448/94‑1 (MQ=60)

                                                                             GCGGGCAAATTGTTTCGCAAGCAGCAAAACGCAGTGCCGATGGCGAGCTGCTGTTAGCTACCCGCAACCGCTTAAGCAGCGTTGTGCCGCTGTC                 <  SRR4302536.2041179/94‑1 (MQ=60)

                                                                             GCGGGCAAATTGTTTCGCAAGCAGCAAAACGCAGTGCCGATGGCGAGCTGCTGTTAGCTACCCGCAACCGCTTAAGCAGCGTTGTGCCGCTGTC                 >  SRR4302536.2077316/1‑94 (MQ=60)

                                                                              CGGGCAAATTGTTTCGCAAGCAGCAAAACGCAGTGCCGATGGCGAGCTGCTGTTAGCTACCCGCAACCGCTTAAGCAGCGTTGTGCCGCTGTCG                >  SRR4302536.1668564/1‑94 (MQ=60)

                                                                              CGGGCAAATTGTTTCGCAAGCAGCAAAACGCAGTGCCGATGGCGAGCTGCTGTTAGCTACCCGCAACCGCTTAAGCAGCGTTGTGCCGCTGTCG                >  SRR4302536.3672060/1‑94 (MQ=60)

                                                                                 GCAAATTGTTTCGCAAGCAGCAAACCGCAGTGCCGATGGCGAGCTGCTGGTAGCTACCCGCAACCGCTTAAACAGCGTTGTCACGCTGTCGCCT             >  SRR4302536.1966047/1‑94 (MQ=60)

                                                                                 GCAAATTGTTTCGCAAGCAGCAAAACGCAGTGCCGATGGCGAGCTGCTGTTAGCTACCCGCAACCGCTTAAGCAGCGTTGTGCCGCTGTCGCCT             <  SRR4302536.543026/94‑1 (MQ=60)

                                                                                 GCAAATTGTTTCGCAAGCAGCAAAACGCAGTGCCGATGGCGAGCTGCTGTTAGCTACCCGCAACCGCTTAAGCAGCGTTGTGCCGCTGTCGCCT             >  SRR4302536.1966048/1‑94 (MQ=60)

                                                                                 GCAAATTGTTTCGCAAGCAGCAAAACGCAGTGCCGATGGCGAGCTGCTGTTAGCTACCCGCAACCGCTTAAGCAGCGTTGTGCCGCTGTCGCCT             <  SRR4302536.188038/94‑1 (MQ=60)

                                                                                 GCAAATTGTTTCGCAAGCAGCAAAACGCAGTGCCGATGGCGAGCTGCTGTTAGCTACCCGCAACCGCTTAAGCAGCGTTGTGCCGCTGTCGCCT             >  SRR4302536.1085657/1‑94 (MQ=60)

                                                                                  CAAATTGTTTCGCAAGCAGCAAAACGCAGTGCCGATGGCGAGCTGCTGTTAGCTACCCGCAACCGCTTAAGCAGCGTTGTGCCGCTGTCGCCTG            >  SRR4302536.6579823/1‑94 (MQ=60)

                                                                                  CAAATTGTTTCGCAAGCAGCAAAACGCAGTGCCGATGGCGAGCTGCTGTTAGCTACCCGCAACCGCTTAAGCAGCGTTGTGCCGCTGTCGCCTG            >  SRR4302536.3945137/1‑94 (MQ=60)

                                                                                  CAAATTGTTTCGCAAGCAGCAAAACGCAGTGCCGATGGCGAGCTGCTGTTAGCTACCCGCAACCGCTTAAGCAGCGTTGTGCCGCTGTCGCCTG            <  SRR4302536.422211/94‑1 (MQ=60)

                                                                                  CAAATTGTTTCGCAAGCAGCAAAACGCAGTGCCGATGGCGAGCTGCTGTTAGCTACCCGCAACCGCTTAAGCAGCGTTGTGCCGCTGTCGACTG            >  SRR4302536.3405430/1‑94 (MQ=60)

                                                                                   AAATTGTTTCGCAAGCAGCAAAACGCAGTGCCGATGGCGAGCTGCTGTTAGCTACCCGCAACCGCTTAAGCAGCGTTGTGCCGCTGTCGCCTGA           >  SRR4302536.6669932/1‑94 (MQ=60)

                                                                                   AAATTGTTTCGCAAGCAGCAAAACGCAGTGCCGATGGCGAGCTGCTGTTAGCTACCCGCAACCGCTTAAGCAGCGTTGTGCCGCTGTCGCCTGA           >  SRR4302536.4227012/1‑94 (MQ=60)

                                                                                   AAATTGTTTCGCAAGCAGCAAAACGCAGTGCCGATGGCGAGCTGCTGTTAGCTACCCGCAACCGCTTAAGCAGCGTTGTGCCGCTGTCGCCTGA           >  SRR4302536.4453052/1‑94 (MQ=60)

                                                                                    AATTGTTTCGCAAGCAGCAAAACGCAGTGCCGATGGCGAGCTGCTGTTAGCTACCCGCAACCGCTTAAGCAGCGTTGTGCCGCTGTCGCCTGAT          <  SRR4302536.6271199/94‑1 (MQ=60)

                                                                                    AATTGTTTCGCAAGCAGCAAAACGCAGTGCCGATGGCGAGCTGCTGTTAGCTACCCGCAACCGCTTAAGCAGCGTTGTGCCGCTGTCGCCTGAT          >  SRR4302536.6395304/1‑94 (MQ=60)

                                                                                    AATTGTTTCGCAAGCAGCAAAACGCAGTGCCGATGGCGAGCTGCTGTTAGCTACCCGCAACCGCTAAAGCAGCGTTGTGCCGCTGTCGCCTGAT          <  SRR4302536.1537017/94‑1 (MQ=60)

                                                                                     ATTGTTTCGCATGCAGCAAAACGCAGTGCCGATGGCGAGCTGCTGTTAGCTACCCGCAACCGCTTAAGCAGCGTTGTGCCGCTGTCGCCTGATG         <  SRR4302536.924511/94‑1 (MQ=60)

                                                                                     ATTGTTTCGCAAGCAGCAAACCGCAGTGCCGATGGCGAGCTGCTGTTAGCTACCCGCAACCGCTTAAGCAGCGTTGTGCCGCTGTCGCCTGATG         <  SRR4302536.1413944/94‑1 (MQ=60)

                                                                                     ATTGTTTCGCAAGCAGCAAAACGCAGTGCCGATGGCGAGCTGCTGTTAGCTACCCGCAACCGCTTAAGCAGCGTTGTGCCGCTGTCGCCTGATG         >  SRR4302536.5652946/1‑94 (MQ=60)

                                                                                     ATTGTTTCGCAAGCAGCAAAACGCAGTGCCGATGGCGAGCTGCTGTTAGCTACCCGCAACCGCTTAAGCAGCGTTGTGCCGCTGTCGCCTGATG         >  SRR4302536.3345289/1‑94 (MQ=60)

                                                                                     ATTGTTTCGCAAGCAGCAAAACGCAGTGCCGATGGCGAGCTGCTGTTAGCTACCCGCAACCGCTTAAGCAGCGTTGTGCCGCTGTCGCCTGATG         >  SRR4302536.3323918/1‑94 (MQ=60)

                                                                                     ATTGTTTCGCAAGCAGCAAAACGCAGTGCCGATGGCGAGCTGCTGTTAGCTACCCGCAACCGCTTAAGCAGCGTTGTGCCGCTGTCGCCTGATG         >  SRR4302536.2719434/1‑94 (MQ=60)

                                                                                     ATTGTTTCGCAAGCAGCAAAACGCAGTGCCGATGGCGAGCTGCTGTTAGCTACCCGCAACCGCTTAAGCAGCGTTGTGCCGCTGTCGCCTGATG         <  SRR4302536.6291178/94‑1 (MQ=60)

                                                                                       TGTTTCGCAAGCAGCAAAACGCAGTGCCGATGGCGAGCTGCTGTTAGCTCCCCGCAACCGCTTAAGCAGCGTTGTGCCGCTGTCGCCTGATGCC       <  SRR4302536.5042/94‑1 (MQ=60)

                                                                                         TTTCGCAAGCAGCAAAACGCAGTGCCGATGGCGAGCTGCTGTTAGCTACCCGCAACCGCTTAAGCAGCGTTGTGCCGCTGTCGCCTGATGCCTG     <  SRR4302536.2803637/94‑1 (MQ=60)

                                                                                         TTTCGCAAGCAGCAAAACGCAGTGCCGATGGCGAGCTGCTGTTAGCTACCCGCAACCGCTTAAGCAGCGTTGTGCCGCTGTCGCCTGATGCCTG     <  SRR4302536.3734277/94‑1 (MQ=60)

                                                                                          TTCGCAAGCAGCAAAACGCAGTGCCGATGGCGAGCTGCTGTTAGCTACCCGCAACCGCTTAAGCAGCGTTGTGCCGCTGTCGCCTGATGCCTGG    >  SRR4302536.5715509/1‑94 (MQ=60)

                                                                                          TTCGCAAGCAGCAAAACGCAGTGCCGATGGCGAGCTGCTGTTAGCTACCCGCAACCGCTTAAGCAGCGTTGTGCCGCTGTCGCCTGATGCCTGG    <  SRR4302536.5120753/94‑1 (MQ=60)

                                                                                          TTCGCAAGCAGCAAAACGCAGTGCCGATGGCGAGCTGCTGTTAGCTACCCGCAACCGCTTAAGCAGCGTTGTGCCGCTGTCGCCTGATGCCTGG    <  SRR4302536.6000999/94‑1 (MQ=60)

                                                                                          TTCGCAAGCAGCAAAACGCAGTGCCGATGGCGAGCTGCTGTTAGCTACCCGCAACCGCTTAAGCAGCGTTGTGCCGCTGTCGCCTGATGCCTGG    >  SRR4302536.2601379/1‑94 (MQ=60)

                                                                                           TCGCAAGCAGCAAAACGCAGTGCCGATGGCGAGCTGCTGTTAGCTACCCGCAACCGCTTAAGCAGCGTTGTGCCGCTGTCGCCTGATGCCTGGC   <  SRR4302536.4230214/94‑1 (MQ=60)

                                                                                            CGCAAGCAGCAAAACGCAGTGCCGATGGCGAGCTGCTGTTAGCTACCCGCAACCGCTTAAGCAGCGTTGTGCCGCTGTCGCCTTATGCCTTGCA  >  SRR4302536.2321619/1‑94 (MQ=60)

TTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCTACGCGTCGGCTGTTTAGTTTTCAGGCTGGCGCACTGGCGGGCGGGCAAATTGTTTCACAAGCAGCAAAACGCAGTGCCGATGGCGAGCTGCTGTTAGCTACCCGCAACCGCTTAAGCAGCGTTGTGCCGCTGTCGCCTGATGCCTGGCA  >  NC_000913/2208238‑2208423

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`