Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 1475 266.7 13469680 98.2% 13227225 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,254,317 T→C T347A (ACG→GCG)  yeiM ← putative transport system permease protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,254,3170TC100.0% 783.5 / NA 241T347A (ACG→GCG) yeiMputative transport system permease protein
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (124/117);  total (124/117)

Only 100 of 255 total aligned reads displayed.

AAAATGCGCCAACGACAACACCGATAGAACCAAAGTTAGCAAAACCACAAAGCGCAAAGGAGATAATCGCAATGGTTTTCACTTCCAGCGTGCCGCCCGTTTGCAGGTATGGGGAGAAACTCAGGTAAGCGACGAATTCGTTAATCGCCAGTTTCTGCCCAATCAGGCTACCCGCAAGAT  >  NC_000913/2254227‑2254406
                                                                                          |                                                                                         
 aaaTGCGCCAACGACAACACCGATAGAACCAAAGTTAGCAAAACCACAAAGCGCAAAGGAGATAATCGCAATGGTTTTCACTTCCAGCGCgcc                                                                                        >  1:1090696/1‑93 (MQ=255)
        ccAACGACAACACCGATAGAACCAAAGTTAGCAAAACCACAAAGCGCAAAGGAGATAATCGCAATGGTTTTCACTTCCAGCGCGCCGCCCGtt                                                                                 >  1:3566206/1‑93 (MQ=255)
        ccAACGACAACACCGATAGAACCAAAGTTAGCAAAACCACAAAGCGCAAAGGAGATAATCGCAATGGTTTTCACTTCCAGCGCGCCGCCCGtt                                                                                 <  1:909449/93‑1 (MQ=255)
        ccAACGACAACACCGATAGAACCAAAGTTAGCAAAACCACAAAGCGCAAAGGAGATAATCGCAATGGTTTTCACTTCCAGCGCGCCGCCCGtt                                                                                 <  1:4370434/93‑1 (MQ=255)
        ccAACGACAACACCGATAGAACCAAAGTTAGCAAAACCACAAAGCGCAAAGGAGATAATCGCAATGGTTTTCACTTCCAGCGCGCCGCCCGtt                                                                                 >  1:2038237/1‑93 (MQ=255)
        ccAACGACAACACCGATAGAACCAAAGTTAGCAAAACCACAAAGCGCAAAGGAGATAATCGCAATGGTTTTCACTTCCAGCGCGCCGCCCGtt                                                                                 <  1:1764328/93‑1 (MQ=255)
          aaCGACAACACCGATAGAACCAAAGTTAGCAAAACCACAAAGCGCAAAGGAGATAATCGCAATGGTTTTCACTTCCAGCGCGCCGCCCGTTTg                                                                               >  1:1833073/1‑93 (MQ=255)
          aaCGACAACACCGATAGAACCAAAGTTAGCAAAACCACAAAGCGCAAAGGAGATAATCGCAATGGTTTTCACTTCCAGCGCGCCGCCCGTTTg                                                                               >  2:1586384/1‑93 (MQ=255)
            cGACAACACCGATAGAACCAAAGTTAGCAAAACCACAAAGCGCAAAGGAGATAATCGCAATGGTTTTCACTTCCAGCGCGCCGCCCGTTTGCa                                                                             <  1:1668718/93‑1 (MQ=255)
            cGACAACACCGATAGAACCAAAGTTAGCAAAACCACAAAGCGCAAAGGAGATAATCGCAATGGTTTTCACTTCCAGCGCGCCGCCCGTTTGCa                                                                             >  2:3114620/1‑93 (MQ=255)
               caacaCCGATAGAACCAAAGTTAGCAAAACCACAAAGCGCAAAGGAGATAATCGCAATGGTTTTCACTTCCAGCGCGCCGCCCGTTTGCAGGt                                                                          <  2:4955388/93‑1 (MQ=255)
                aacaCCGATAGAACCAAAGTTAGCAAAACCACAAAGCGCAAAGGAGATAATCGCAATGGTTTTCACTTCCAGCGCGCCGCCCGTTTGCAGGTa                                                                         >  2:4672789/1‑93 (MQ=255)
                 acacCGATAGAACCAAAGTTAGCAAAACCACAAAGCGCAAAGTAGATAATCGCAATGGTTTTCACTTCCAGCGCGCCGCCCGTTTGCAGGTAt                                                                        >  1:809230/1‑93 (MQ=255)
                 acacCGATAGAACCAAAGTTAGCAAAACCACAAAGCGCAAAGGAGATAATCGCAATGGTTTTCACTTCCAGCGCGCCGCCCGTTTGCAGGTAt                                                                        <  2:139753/93‑1 (MQ=255)
                    ccGATAGAACCAAAGTTAGCAAAACCACAAAGCGCAAAGGAGATAATCGCAATGGTTTTCACTTCCAGCGCGCCGCCCGTTTGCAGGTATggg                                                                     <  1:4146582/93‑1 (MQ=255)
                     cGATAGAACCAAAGTTAGCAAAACCACAAAGCGCAAAGGAGATAATCGCAATGGTTTTCACTTCCAGCGCGCCGCCCGTTTGCAGGTATgggg                                                                    <  2:6570542/93‑1 (MQ=255)
                      gATAGAACCAAAGTTAGCAAAACCACAAAGCGCAAAGGAGATAATCGCAATGGTTTTCACTTCCAGCGCGCCGCCCGTTTGCAGGTATGGGga                                                                   >  1:492558/1‑93 (MQ=255)
                       aTAGAACCAAAGTTAGCAAAACCACAAAGCGCAAAGGAGATAATCGCAATGGTTTTCACTTCCAGCGCGCCGCCCGTTTGCAGGTATGGGgag                                                                  >  2:1461125/1‑93 (MQ=255)
                        tAGAACCAAAGTTAGCAAAACCACAAAGCGCAAAGGAGATAATCGCAATGGTTTTCACTTCCAGCGCGCCGCCCGTTTGCAGGTATGGGgaga                                                                 <  1:5782892/93‑1 (MQ=255)
                          gAACCAAAGTTAGCAAAACCACAAAGCGCAAAGGAGATAATCGCAATGGTTTTCACTTCCAGCGCGCCGCCCGTTTGCAGGTATGGGGAGaaa                                                               <  1:6708125/93‑1 (MQ=255)
                          gAACCAAAGTTAGCAAAACCACAAAGCGCAAAGGAGATAATCGCAATGGTTTTCACTTCCAGCGCGCCGCCCGTTTGCAGGTATGGGGAGaaa                                                               <  1:1564427/93‑1 (MQ=255)
                            aCCAAAGTTAGCAAAACCACAAAGCGCAAAGGAGATAATCGCAATGGTTTTCACTTCCAGCGCGCCGCCCGTTTGCAGGTATGGTGAGAAACt                                                             >  1:2980183/1‑93 (MQ=255)
                            aCCAAAGTTAGCAAAACCACAAAGCGCAAAGGAGATAATCGCAATGGTTTTCACTTCCAGCGCGCCGCCCGTTTGCAGGTATGGGGAGAAACt                                                             >  2:1955455/1‑93 (MQ=255)
                            aCCAAAGTTAGCAAAACCACAAAGCGCAAAGGAGATAATCGCAATGGTTTTCACTTCCAGCGCGCCGCCCGTTTGCAGGTATGGGGAGAAACt                                                             <  2:3923843/93‑1 (MQ=255)
                             ccAAAGTTAGCAAAACCACAAAGCGCAAAGGAGATAATCGCAATGGTTTTCACTTCCAGCGCGCCGCCCGTTTGCAGGTATGGGGAGAAACTc                                                            >  2:2552142/1‑93 (MQ=255)
                             ccAAAGTTAGCAAAACCACAAAGCGCAAAGGAGATAATCGCAATGGTTTTCACTTCCAGCGCGCCGCCCGTTTGCAGGTATGGGGAGAAACTc                                                            >  2:1255711/1‑93 (MQ=255)
                               aaaGTTAGCAAAACCACAAAGCGCAAAGGAGATAATCGCAATGGTTTTCACTTCCAGCGCGCCGCCCGTTTGCAGGTATGGGGAGAAACTCAg                                                          <  2:4541435/93‑1 (MQ=255)
                                aaGTTAGCAAAACCACAAAGCGCAAAGGAGATAATCGCAATGGTTTTCACTTCCAGCGCGCCGCCCGTTTGCAGGTATGGGGAGAAACTCAgg                                                         <  1:3742215/93‑1 (MQ=255)
                                aaGTTAGCAAAACCACAAAGCGCAAAGGAGATAATCGCAATGGTTTTCACTTCCAGCGCGCCGCCCGTTTGCAGGTATGGGGAGAAACTCAgg                                                         >  2:5114361/1‑93 (MQ=255)
                                 aGTTAGCAAAACCACAAAGCGCAAAGGAGATAATCGCAATGGTTTTCACTTCCAGCGCGCCTCCCGTTTGCAGGTATGGGGAGAAACTCAGGt                                                        <  1:2326902/93‑1 (MQ=255)
                                 aGTTAGCAAAACCACAAAGCGCAAAGGAGATAATCGCAATGGTTTTCACTTCCAGCGCGCCGCCCGTTTGCAGGTATGGGGAGAAACTCAGGt                                                        >  2:3659446/1‑93 (MQ=255)
                                 aGTTAGCAAAACCACAAAGCGCAAAGGAGATAATCGCAATGGTTTTCACTTCCAGCGCGCCGCCCGTTTGCAGGTATGGGGAGAAACTCAGGt                                                        <  1:2894387/93‑1 (MQ=255)
                                 aGTTAGCAAAACCACAAAGCGCAAAGGAGATAATCGCAATGGTTTTCACTTCCAGCGCGCCGCCCGTTTGCAGGTATGGGGAGAAACTCAGGt                                                        >  1:4832307/1‑93 (MQ=255)
                                  gTTAGCAAAACCACAAAGCGCAAAGGAGATAATCGCAATGGTTTTCACTTCCAGCGCGCCGCCCGTTTGCAGGTATGGGGAGAAACTCAGGTa                                                       <  2:914895/93‑1 (MQ=255)
                                    tAGCAAAACCACAAAGCGCAAAGGAGATAATCGCAATGGTTTTCACTTCCAGCGCGCCGCCCGTTTGCAGGTATGGGGAGAAACTCAGGTAAg                                                     >  2:2090428/1‑93 (MQ=255)
                                    tAGCAAAACCACAAAGCGCAAAGGAGATAATCGCAATGGTTTTCACTTCCAGCGCGCCGCCCGTTTGCAGGTATGGGGAGAAACTCAGGTAAg                                                     <  1:1230252/93‑1 (MQ=255)
                                    tAGCAAAACCACAAAGCGCAAAGGAGATAATCGCAATGGTTTTCACTTCCAGCGCGCCGCCCGTTTGCAGGTATGGGGAGAAACTCAGGTAAg                                                     <  1:6483602/93‑1 (MQ=255)
                                     aGCAAAACCACAAAGCGCAAAGGAGATAATCGCAATGGTTTTCACTTCCAGCGCGCCGCCCGTTTGCAGGTATGGGGAGAAACTCAGGTAAGc                                                    >  2:6446475/1‑93 (MQ=255)
                                     aGCAAAACCACAAAGCGCAAAGGAGATAATCGCAATGGTTTTCACTTCCAGCGCGCCGCCCGTTTGCAGGTATGGGGAGAAACTCAGGTAAGc                                                    <  1:4423885/93‑1 (MQ=255)
                                     aGCAAAACCACAAAGCGCAAAGGAGATAATCGCAATGGTTTTCACTTCCAGCGCGCCGCCCGTTTGCAGGTATGGGGAGAAACTCAGGTAAGc                                                    <  1:6378676/93‑1 (MQ=255)
                                      gCAAAACCACAAAGCGCAAAGGAGATAATTGCAATGGTTTTCACTTCCAGCGCGCCGCCCGTTTGCAGGTATGGGGAGAAACTCAGGTAAGcg                                                   <  1:5265220/93‑1 (MQ=255)
                                        aaaaCCACAAAGCGCAAAGGAGATAATCGCAATGGTTTTCACTTCCAGCGCGCCGCCCGTTTGCAGGTATGGGGAGAAACTCAGGTAAGcgac                                                 >  2:5970436/1‑93 (MQ=255)
                                        aaaaCCACAAAGCGCAAAGGAGATAATCGCAATGGTTTTCACTTCCAGCGCGCCGCCCGTTTGCAGGTATGGGGAGAAACTCAGGTAAGcgac                                                 <  1:3882690/93‑1 (MQ=255)
                                           aCCACAAAGCGCAAAGGAGATAATCGCAATGGTTTTCACTTCCAGCGCGCCGCCCGTTTGCAGGTATGGGGAGAAACTCAGGTAAGCGACGaa                                              >  2:129537/1‑93 (MQ=255)
                                           aCCACAAAGCGCAAAGGAGATAATCGCAATGGTTTTCACTTCCAGCGCGCCGCCCGTTTGCAGGTATGGGGAGAAACTCAGGTAAGCGACGaa                                              >  2:6158248/1‑93 (MQ=255)
                                            ccACAAAGCGCAAAGGAGATAATCGCAATGGTTTTCACTTCCAGCGCGCCGCCCGTTTGCAGGTATGGGGAGAAACTCAGGTAAGCGACGAAt                                             <  2:6296643/93‑1 (MQ=255)
                                            ccACAAAGCGCAAAGGAGATAATCGCAATGGTTTTCACTTCCAGCGCGCCGCCCGTTTGCAGGTATGGGGAGAAACTCAGGTAAGCGACGAAt                                             <  2:4467014/93‑1 (MQ=255)
                                            ccACAAAGCGCAAAGGAGATAATCGCAATGGTTTTCACTTCCAGCGCGCCGCCCGTTTGCAGGTATGGGGAGAAACTCAGGTAAGCGACGAAt                                             >  1:6171354/1‑93 (MQ=255)
                                            ccACAAAGCGCAAAGGAGATAATCGCAATGGTTTTCACTTCCAGCACGCCGCCCGTTTGCAGGTATGGGGAGAAACTCAGGTAAGCGACGAAt                                             >  2:2347623/1‑93 (MQ=255)
                                              acaAAGCGCAAAGGAGATAATCGCAATGGTTTTCACTTCCAGCGCGCCGCCCGTTTGCAGGTATGGGGAGAAACTCAGGTAAGCGACGAATTc                                           <  1:2611295/93‑1 (MQ=255)
                                              acaAAGCGCAAAGGAGATAATCGCAATGGTTTTCACTTCCAGCGCGCCGCCCGTTTGCAGGTATGGGGAGAAACTCAGGTAAGCGACGAATTc                                           >  1:3162961/1‑93 (MQ=255)
                                              acaAAGCGCAAAGGAGATAATCGCAATGGTTTTCACTTCCAGCGCGCCGCCCGTTTGCAGGTATGGGGAGAAACTCAGGTAAGCGACGAATTc                                           >  1:71748/1‑93 (MQ=255)
                                               caAAGCGCAAAGGAGATAATCGCAATGGTTTTCACTTCCAGCGCGCCGCCCGTTTGCAGGTATGGGGAGAAACTCAGGTAAGCGACGAATTCg                                          <  1:4480138/93‑1 (MQ=255)
                                               caAAGCGCAAAGGAGATAATCGCAATGGTTTTCACTTCCAGCGCGCCGCCCGTTTGCAGGTATGGGGAGAAACTCAGGTAAGCGACGAATTCg                                          >  2:5552452/1‑93 (MQ=255)
                                                aaaGCGCAAAGGAGATAATCGCAATGGTTTTCACTTCCAGCGCGCCGCCCGTTTGCAGTTATGGGGAGAAACTCAGGTAAGCGACGAATTCGt                                         <  2:3796678/93‑1 (MQ=255)
                                                aaaGCGCAAAGGAGATAATCGCAATGGTTTTCACTTCCAGCGCGCCGCCCGTTTGCAGGTATGGGGAGAAACTCAGGTAAGCGACGAATTCGt                                         >  1:6130245/1‑93 (MQ=255)
                                                 aaGCGCAAAGGAGATAATCGCAATGGTTTTCACTTCCAGCGCGCCGCCCGTTTGCAGGTATGGGGAGAAACTCAGGTAAGCGACGAATTCGtt                                        >  1:6436256/1‑93 (MQ=255)
                                                   gcgcAGAGGAGATAATCGCAATGGTTTTCACTTCCAGCGCGCCGCCCGTTTGCAGGTATGGGGAGAAACTCAGGTAAGCGACGAATTCGTTaa                                      <  1:5509365/93‑1 (MQ=255)
                                                   gcgcAAAGGAGATAATCGCAATGGTTTTCACTTCCAGCGCGCCGCCCGTTTGCAGGTATGGGGAGAAACTCAGGTAAGCGACGAATTCGTTaa                                      <  1:1247393/93‑1 (MQ=255)
                                                   gcgcAAAGGAGATAATCGCAATGGTTTTCACTTCCAGCGCGCCGCCCGTTTGCAGGTATGGGGAGAAACTCAGGTAAGCGACGAATTCGTTaa                                      <  2:2617667/93‑1 (MQ=255)
                                                   gcgcAAAGGAGATAATCGCAATGGTTTTCACTTCCAGCGCGCCGCCCGTTTGCAGGTATGGGGAGAAACTCAGGTAAGCGACGAATTCGTTaa                                      <  2:1140692/93‑1 (MQ=255)
                                                     gcAAAGGATATAATCCCAATGGTTTTCACTTCCAGCGCGCCGCCCGTTTGCAGGTATGGTGAGAATCTCATGTAAGCGACGAATTCGTTAATc                                    <  1:1029709/93‑1 (MQ=255)
                                                     gcAAAGGAGATAATCGCAATGGTTTTCACTTCCAGCGCGCCGCCCGTTTGCAGGTATGGGGAGAAACTCAGGTAAGCGACGAATTCGTTAATc                                    <  2:6284745/93‑1 (MQ=255)
                                                     gcAAAGGAGATAATCGCAATGGTTTTCACTTCCAGCGCGCCGCCCGTTTGCAGGTATGGGGAGAAACTCAGGTAAGCGACGAATTCGTTAATc                                    >  2:5411544/1‑93 (MQ=255)
                                                       aaaGGAGATAATCGCAATGGTTTTCACTTCCAGCGCGCCGCCCGTTTGCAGGTATGGGGAGAAACTCAGGTAAGCGACGAATTCGTTAATCGc                                  >  2:811279/1‑93 (MQ=255)
                                                        aaGGAGATAATCGCAATGGTTTTCACTTCCAGCGCGCCGCCCGTTTGCAGGTATGGGGAGAAACTCAGGTAAGCGACGAATTCGTTAATCGcc                                 <  1:2113748/93‑1 (MQ=255)
                                                        aaGGAGATAATCGCAATGGTTTTCACTTCCAGCGCGCCGCCCGTTTGCAGGTATGGGGAGAAACTCAGGTAAGCGACGAATTCGTTAATCGcc                                 >  2:2850600/1‑93 (MQ=255)
                                                         aGGAGATAATCGCAATGGTTTTCACTTCCAGCGCGCCGCCCGTTTGCAGGTATGGGGAGAAACTCAGGTAAGCGACGAATTCGTTAATCGCCa                                >  2:4368353/1‑93 (MQ=255)
                                                         aGGAGATAATCGCAATGGTTTTCACTTCCAGCGCGCCGCCCGTTTGCAGGTATGGGGAGAAACTCAGGTAAGCGACGAATTCGTTAATCGCCa                                <  1:369058/93‑1 (MQ=255)
                                                          ggAGATAATCGCAATGGTTTTCACTTCCAGCGCGCCGCCCGTTTGCAGGTATGGGGAGAAACTCAGGTAAGCGACGAATTCGTTAATCGCCAg                               >  2:181478/1‑93 (MQ=255)
                                                          ggAGATAATCGCAATGGTTTTCACTTCCAGCGCGCCGCCCGTTTGCAGGTATGGGGAGAAACTCAGGTAAGCGACGAATTCGTTAATCGCCAg                               <  1:5317698/93‑1 (MQ=255)
                                                          ggAGATAATCGCAATGGTTTTCACTTCCAGCGCGCCGCCCGTTTGCAGGTATGGGGAGAAACTCAGGTAAGCGACGAATTCGTTAATCGCCAg                               <  1:4174575/93‑1 (MQ=255)
                                                            agaTAATCGCAATGGTTTTCACTTCCAGCGCGCCGCCCGTTTGCAGGTATGGGGAGAAACTCAGGTAAGCGACGAATTCGTTAATCGCCAGtt                             <  2:4233652/93‑1 (MQ=255)
                                                            agaTAATCACAATGGTTTTCACTTCCAGCGCGCCGCCCGTTTGCAGGTATGGTGAGAAACGCAGGTAAGCGACGAATTCGTTAATCGCCAGtt                             <  2:1423196/93‑1 (MQ=255)
                                                               tAATCGCAATGGTTTTCACTTCCAGCGCGCCGCCCGTTTGCAGGTATGGGGAGAAACTCAGGTAAGCGACGAATTCGTTAATCGCCAGTTTCt                          >  1:4383310/1‑93 (MQ=255)
                                                               tAATCGCAATGGTTTTCACTTCCAGCGCGCCGCCCGTTTGCAGGTATGGGGAGAAACTCAGGTAAGCGACGAATTCGTTAATCGCCAGTTTCt                          <  1:598594/93‑1 (MQ=255)
                                                               tAATCGCAATGGTTTTCACTTCCAGCGCGCCGCCCGTTTGCAGGTATGGGGAGAAACTCAGGTAAGAGACGAATTCGTTAATCGCCAGTTTCt                          >  2:568771/1‑93 (MQ=255)
                                                               tAATCGCAATGGTTTTCACTTACAGCGCGTCGCCCGTTTGCAGGAATGGGGAGCAACTCAGGTAAGCGACGAATTCGTTAATCTCCAGTTTCt                          >  1:3333033/1‑93 (MQ=255)
                                                                 aTCGCAATGGTTTTCACTTCCAGCGCGCCGCCCGTTTGCAGGTATGGGGAGAAACTCAGGTAAGCGACGAATTCGTTAATCGCCAGTTTCTGc                        >  2:108750/1‑93 (MQ=255)
                                                                 aTCGCAATGGTTTTCACTTCCAGCGCGCCGCCCGTTTGCAGGTATGGGGAGAAACTCAGGTAAGCGACGAATTCGTTAATCGCCAGTTTCTGc                        >  2:4102750/1‑93 (MQ=255)
                                                                  tCGCAATGGTTTTCACTTCCAGCGCGCCGCCCGTTTGCAGGTATGGGGAGAAACTCAGGTAAGCGACGAATTCGTTAATCGCCAGTTTCTGcc                       >  2:1199703/1‑93 (MQ=255)
                                                                   cGCAATGGTTTTCACTTCCAGCGCGCCGCCCGTTTGCAGGTATGGGGAGAAACTCAGGTAAGCGACGAATTCGTTAATCGCCAGTTTCTGccc                      <  1:836748/93‑1 (MQ=255)
                                                                      aaTGGTTTTCACTTCCAGCGCGCCGCCCGTTTGCAGGTATGGGGAGAAACTCAGGTAAGCGACGAATTCGTTAATCGCCAGTTTCTGCCCAAt                   >  2:3965377/1‑93 (MQ=255)
                                                                      aaTGGTTTTCACTTCCAGCGCGCCGCCCGTTTGCAGGTATGGGGAGAAACTCAGGTAAGCGACGAATTCGTTAATCGCCAGTTTCTGCCCAAt                   >  2:6099373/1‑93 (MQ=255)
                                                                       aTGGTTTTCACTTCCAGCGCGCCGCCCGTTTGCAGGTATGGGGAGAAACTCAGGTAAGCGACGAATTCGTTAATCGCCAGTTTCTGCCCAATc                  >  1:6341830/1‑93 (MQ=255)
                                                                       aTGGTTTTCACTTCCAGCGCGCCGCCCGTTTGCAGGTATGGGGAGAAACTCAGGTAAGCGACGAATTCGTTAATCGCCAGTTTCTGCCCAATc                  <  2:3484107/93‑1 (MQ=255)
                                                                        tGGTTTTCACTTCCAGCGCGCCGCCCGTTTGCAGGTATGGGGAGAAACTCAGGTAAGCGACGAATTCGTTAATCGCCAGTTTCTGCCCAATCa                 <  2:2296207/93‑1 (MQ=255)
                                                                        tGGTTTTCACTTCCAGCGCGCCGCCCGTTTGCAGGTATGGGGAGAAACTCAGGTAAGCGACGAATTCGTTAATCGCCAGTTTCTGCCCAATCa                 >  2:3695776/1‑93 (MQ=255)
                                                                        tGGTTTTCACTTCCAGCGCGCCGCCCGTTTGCAGGTATGGGGAGAAACTCAGGTAAGCGACGAATTCGTTAATCGCCAGTTTCTGCCCAATCa                 <  2:3360733/93‑1 (MQ=255)
                                                                        tGGTTTTCACTTCCAGCGCGCCGCCCGTTTGCAGGTATGGGGAGAAACTCAGGTAAGCGACGAATTCGTTAATCGCCAGTTTCTGCCCAATCa                 >  1:5405617/1‑93 (MQ=255)
                                                                         ggTTTTCACTTCCAGCGCGCCGCCCGTTTGCAGGTATGGGGAGAAACTCAGGTAAGCGACGGATTCGTTAATCGCCAGTTTCTGCCCAATCAg                >  2:6000749/1‑93 (MQ=255)
                                                                              tCACTTCCAGCGCGCCGCCCGTTTGCAGGTATGGGGAGAAACTCAGGTAAGCGACGAATTCGTTAATCGCCAGTTTCTGCCCAATCAGGCTAc           <  1:5205202/93‑1 (MQ=255)
                                                                               cACTTCCAGCGCGCCGCCCGTTTGCAGGTATGGGGAGAAACTCAGGTAAGCGACGAATTCGTTAATCGCCAGTTTCTGCCCAATCAGGCTAcc          >  1:2820269/1‑93 (MQ=255)
                                                                                aCTTCCAGCGCGCCGCCCGTTTGCAGGTATGGGGAGAAACTCAGGTAAGCGACGAATTCGTTAATCGCCAGTTTCTGCCCAATCAGGCTAccc         <  1:5581943/93‑1 (MQ=255)
                                                                                  ttCCAGCGCGCCGCCCGTTTGCAGGTATGGGGAGAAACTCAGGTAAGCGACGAATTCGTTAATCGCCAGTTTCTGCCCAATCAGGCTACCCGc       >  2:6624426/1‑93 (MQ=255)
                                                                                    ccAGCGCGCCGCCCGTTTGCAGGTATGGGGAGAAACTCAGGTAAGCGACGAATTCGTTAATCGCCAGTTTCTGCCCAATCAGGCTACCCGCaa     <  1:6326627/93‑1 (MQ=255)
                                                                                      aGCGCGCCGCCCGTTTGCAGGTATGGGGAGAAACTCAGGTAAGCGACGAATTCGTTAATCGCCAGTTTCTGCCCAATCAGGCTACCCGCAAGa   >  2:277643/1‑93 (MQ=255)
                                                                                       gcgcgcCGCCCGTTTGCAGGTATGGGGAGAAACTCAGGTAAGCGACGAATTCGTTAATCGCCAGTTTCTGCCCAATCAGGCTACCCGCAAGAt  >  1:4732063/1‑93 (MQ=255)
                                                                                       gcgcgcCGCCCGTTTGCAGGTATGGGGAGAAACTCAGGTAAGCGACGAATTCGTTAATCGCCAGTTTCTGCCCAATCAGGCTACCCGCAAGAt  <  1:59113/93‑1 (MQ=255)
                                                                                       gcgcgcCGCCCGTTTGCAGGTATGGGGAGAAACTCAGGTAAGCGACGAATTCGTTAATCGCCAGTTTCTGCCCAATCAGGCTACCCGCAAGAt  >  1:3945939/1‑93 (MQ=255)
                                                                                          |                                                                                         
AAAATGCGCCAACGACAACACCGATAGAACCAAAGTTAGCAAAACCACAAAGCGCAAAGGAGATAATCGCAATGGTTTTCACTTCCAGCGTGCCGCCCGTTTGCAGGTATGGGGAGAAACTCAGGTAAGCGACGAATTCGTTAATCGCCAGTTTCTGCCCAATCAGGCTACCCGCAAGAT  >  NC_000913/2254227‑2254406

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
CCGAAAATGCGCCAACGACAACACCGATAGAACCAAAGTTAGCAAAACCACAAAGCGCAAAGGAGATAATCGCAATGGTTTTCACTTCCAGCGTGCCGCCCGTTTGCAGGTATGGGGAGAAACTCAGGTAAGCGACGAATTCGTTAATCGCCAGTTTCTGCCCAATCAGGCTACCCGCAAGATTGG  >  NC_000913/2254224‑2254409
                                                                                             |                                                                                            
CCGAAAATGCGCCAACGACAACACCGATAGAACCAAAGTTAGCAAAACCACAAAGCGCAAAGGAGATAATCGCAATGGTTTTCACTTCCAGCGC                                                                                              >  SRR4302536.2470038/1‑94 (MQ=60)
CCGAAAATGCGCCAACGACAACACCGATAGAACCAAAGTTAGCAAAACCACAAAGCGCAAAGGAGATAATCGCAATGGTTTTCACTTCCAGCGC                                                                                              >  SRR4302536.1911698/1‑94 (MQ=60)
 CGAAAATGCGCCAACGACAACACCGATAGAACCAAAGTTAGCAAAACCACAAAGCGCAAAGGAGATAATCGCAATGGTTTTCACTTCCAGCGCG                                                                                             <  SRR4302536.2341578/94‑1 (MQ=60)
   AAAATGCGCCAACGACAACACCGATAGAACCAAAGTTAGCAAAACCACAAAGCGCAAAGGAGATAATCGCAATGGTTTTCACTTCCAGCGCGCC                                                                                           >  SRR4302536.1123405/1‑94 (MQ=60)
   AAAATGCGCCAAAGACCACACCGATAGAACCAAAGTTAACAAAACCACAAAGCGCAAACGAGATAATCGCAATGGGTTTCCCTTCCAGCGCGCC                                                                                           >  SRR4302536.5021628/1‑94 (MQ=60)
    AAATGCGCCAACGACAACACCGATAGAACCAAAGTTAGCAAAACCACAAAGCGCAAAGGAGATAATCGCAATGGTTTTCACTTCCAGCGCGCCG                                                                                          <  SRR4302536.6386610/94‑1 (MQ=60)
        GCGCCAACGACAACACCGATAGAACCAAAGTTAGCAAAACCACAAAGCGCAAAGGAGATAATCGCAATGGTTTTCACTTCCAGCGCGCCGCCCG                                                                                      >  SRR4302536.2937537/1‑94 (MQ=60)
          GCCAACGACAACACCGATAGAACCAAAGTTAGCAAAACCACAAAGCGCAAAGGAGATAATCGCAATGGTTTTCACTTCCAGCGCGCCGCCCGTT                                                                                    >  SRR4302536.3672834/1‑94 (MQ=60)
          GCCAACGACAACACCGATAGAACCAAAGTTAGCAAAACCACAAAGCGCAAAGGAGATAATCGCAATGGTTTTCACTTCCAGCGCGCCGCCCGTT                                                                                    >  SRR4302536.2099631/1‑94 (MQ=60)
          GCCAACGACAACACCGATAGAACCAAAGTTAGCAAAACCACAAAGCGCAAAGGAGATAATCGCAATGGTTTTCACTTCCAGCGCGCCGCCCGTT                                                                                    <  SRR4302536.6558573/94‑1 (MQ=60)
          CCCAACGACAACACCGATAGAACCAAAGTTAGCAAAACCACAAAGCGCAAAGGAGATAATCGCAATGGTTTTCACTTCCAGCGCGCCGCCCGTT                                                                                    <  SRR4302536.4059004/94‑1 (MQ=60)
           CCAACGACAACACCGATAGAACCAAAGTTAGCAAAACCACAAAGCGCAAAGGAGATAATCGCAATGGTTTTCACTTCCAGCGCGCCGCCCGTTT                                                                                   <  SRR4302536.4500998/94‑1 (MQ=60)
           CCAACGACAACACCGATAGAACCAAAGTTAGCAAAACCACAAAGCGCAAAGGAGATAATCGCAATGGTTTTCACTTCCAGCGCGCCGCCCGTTT                                                                                   <  SRR4302536.1817605/94‑1 (MQ=60)
           CCAACGACAACACCGATAGAACCAAAGTTAGCAAAACCACAAAGCGCAAAGGAGATAATCGCAATGGTTTTCACTTCCAGCGCGCCGCCCGTTT                                                                                   <  SRR4302536.936244/94‑1 (MQ=60)
            CAACGACAACACCGATAGAACCAAAGTTAGCAAAACCACAAAGCGCAAAGGAGATAATCGCAATGGTTTTCACTTCCAGCGCGCCGCCCGTTTG                                                                                  >  SRR4302536.1888332/1‑94 (MQ=60)
             AACGACAACACCGATAGAACCAAAGTTAGCAAAACCACAAAGCGCAAAGGAGATAATCGCAATGGTTTTCACTTCCAGCGCGCCGCCCGTTTGC                                                                                 >  SRR4302536.4506775/1‑94 (MQ=60)
             AACGACAACACCGATAGAACCAAAGTTAGCAAAACCACAAAGCGCAAAGGAGATAATCGCAATGGTTTTCACTTCCAGCGCGCCGCCCGTTTGC                                                                                 <  SRR4302536.2018469/94‑1 (MQ=60)
              ACGACAACACCGATAGAACCAAAGTTAGCGAAACCACAAAGCGCAAAGGAGATAATCGCAATGGTTTTCACTTCCAGCGCGCCGCCCGTTTGCA                                                                                <  SRR4302536.6792367/94‑1 (MQ=60)
              ACGACAACACCGATAGAACCAAAGTTAGCAAAACCACAAAGCGCAAAGGAGATAATCGCAATGGTTTTCACTTCCAGCGCGCCGCCCGTTTGCA                                                                                <  SRR4302536.4093575/94‑1 (MQ=60)
               CGACAACACCGATAGAACCAAAGTTAGCAAAACCACAAAGCGCAAAGGAGATAATCGCAATGGTTTTCACTTTCAGCGCGCCGCCCGTTTGCAG                                                                               >  SRR4302536.6354291/1‑94 (MQ=60)
               CGACAACACCGATAGAACCAAAGTTAGCAAAACCACAAAGCGCAAAGGAGATAATCGCAATGGTTTTCACTTCCAGCGCGCCGCCCGTTTGCAG                                                                               <  SRR4302536.1717126/94‑1 (MQ=60)
               CGACAACACCGATAGAACCAAAGTTAGCAAAACCACAAAGCGCAAAGGAGATAATCGCAATGGTTTTCACTTCCAGCGCGCCGCCCGTTTGCAG                                                                               <  SRR4302536.836529/94‑1 (MQ=60)
                GACAACACCGATAGAACCAAAGTTAGCAAAACCACAAAGCGCAAAGGAGATAATCGCAATGGTTTTCACTTCCAGCGCGCCGCCCGTTTGCAGG                                                                              >  SRR4302536.1279754/1‑94 (MQ=60)
                 ACAACACCGATAGAACCAAAGTTAGCAAAACCACAAAGCGCAAAGGAGATAATCGCAATGGTTTTCACTTCCAGCGCGCCGCCCGTTTGCAGGT                                                                             <  SRR4302536.87087/94‑1 (MQ=60)
                  CAACACCGATAGAACCAAAGTTAGCAAAACCACAAAGCGCAAAGGAGATAATCGCAATGGTTTTCACTTCCAGCGCGCCGCCCGTTTGCAGGTA                                                                            >  SRR4302536.695580/1‑94 (MQ=60)
                   AACACCGATAGAACCAAAGTTAGCAAAACCACAAAGCGCAAAGTAGATAATCGCAATGGTTTTCACTTCCAGCGCGCCGCCCGTTTGCAGGTAT                                                                           >  SRR4302536.832959/1‑94 (MQ=60)
                   AACACCGATAGAACCAAAGTTAGCAAAACCACAAAGCGCAAAGGAGATAATCGCAATGGTTTTCACTTCCAGCGCGCCGCCCGTTTGCAGGTAT                                                                           <  SRR4302536.6234516/94‑1 (MQ=60)
                   AACACCGATAGAACCAAAGTTAGCAAAACCACAAAGCGCAAAGGAGATAATCGCAATGGTTTTCACTTCCAGCGCGCCGCCCGTTTGCAGGTAT                                                                           >  SRR4302536.5159059/1‑94 (MQ=60)
                    ACACCGATAGAACCAAGGTTAGCAAAACCACAAGGCGCAAAGGAGATATTGGCAATGGTTTTCACTCCGAGCGCGCCGCCCGTTTGCAGGTATG                                                                          <  SRR4302536.6684271/94‑1 (MQ=60)
                    ACACCGATAGAACCAAAGTTAGCAAAACCACAAAGCGCAAAGGAGATAATCGCAATGGTTTTCACTTCCAGCGCGCCGCCCGTTTGCAGGTATG                                                                          >  SRR4302536.6163114/1‑94 (MQ=60)
                    ACACCGATAGAACCAAAGTTAGCAAAACCACAAAGCGCAAAGGAGATAATCGCAATGGTTTTCACTTCCAGCGCGCCGCCCGTTTGCAGGTATG                                                                          <  SRR4302536.541978/94‑1 (MQ=60)
                     CACCGATAGAACCAAAGTTAGCAAAACCACAAAGCGCAAAGGAGATAATCGCAATGGTTTTCACTTCCAGCGCGCCGCCCGTTTGCAGGTATGG                                                                         <  SRR4302536.1686761/94‑1 (MQ=60)
                     CACCGATAGAACCAAAGTTAGCAAAACCACAAAGCGCAAAGGAGATAATCGCAATGGTTTTCACTTCCAGCGCGCCGCCCGTTTGCAGGTATGG                                                                         <  SRR4302536.6524738/94‑1 (MQ=60)
                      ACCGATAGAACCAAAGTTAGCAAAACCACAAAGCGCAAAGGAGATAATCGCAATGGTTTTCACTTCCAGCGCGCCGCCCGTTTGCAGGTATGGG                                                                        >  SRR4302536.5756570/1‑94 (MQ=60)
                      ACCGATAGAACCAAAGTTAGCAAAACCACAAAGCGCAAAGGAGATAATCGCAATGGTTTTCACTTCCAGCGCGCCGCCCGTTTGCAGGTATGGG                                                                        >  SRR4302536.4713393/1‑94 (MQ=60)
                      ACCGATAGAACCAAAGTTAGCAAAACCACAAAGCGCAAAGGAGATAATCGCAATGGTTTTCACTTCCAGCGCGCCGCCCGTTTGCAGGTATGGG                                                                        >  SRR4302536.6636222/1‑94 (MQ=60)
                       CCGATAGAACCAAAGTTAGCAAAACCACAAAGCGCAAAGGAGATAATCGCAATGGTTTTCACTTCCAGCGCGCCGCCCGTTTGCAGGTATGGGG                                                                       >  SRR4302536.4892762/1‑94 (MQ=60)
                       CCGATAGAACCAAAGTTAGCAAAACCACAAAGCGCAAAGGAGATAATCGCAATGGTTTTCACTTCCAGCGCGCCGCCCGTTTGCAGGTATGGGG                                                                       <  SRR4302536.4269612/94‑1 (MQ=60)
                        CGATAGAACCAAAGTTAGCAAAACCACAAAGCGCAAAGGAGATAATCGCAATGGTTTTCACTTCCAGCGCGCCGCCCGTTTGCAGGTATGGGGA                                                                      >  SRR4302536.505301/1‑94 (MQ=60)
                          ATAGAACCAAAGTTAGCAAAACCACAAAGCGCAAAGGAGATAATCGCAATGGTTTTCACTTCCAGCGCGCCGCCCGTTTGCAGGTATGGGGAGA                                                                    >  SRR4302536.2465630/1‑94 (MQ=60)
                           TAGAACCAAAGTTAGCAAAACCACAAAGCGCAAAGGAGATAATCGCAATGGTTTTCACTTCCAGCGCGCCGCCCGTTTGCAGGTATGGGGAGAA                                                                   <  SRR4302536.5955007/94‑1 (MQ=60)
                            AGAACCAAAGTTAGCAAAACCACAAAGCGCAAAGGAGATAATCGCAATGGTTTTCACTTCCAGCGCGCCGCCCGTTTGCAGGTATGGGGAGAAA                                                                  >  SRR4302536.184038/1‑94 (MQ=60)
                             GAACCAAAGTTAGCAAAACCACAAAGCGCAAAGGAGATAATCGCAATGGTTTTCACTTCCAGCGCGCCGCCCGTTTGCAGGTATGGGGAGAAAC                                                                 <  SRR4302536.6907313/94‑1 (MQ=60)
                             GAACCAAAGTTAGCAAAACCACAAAGCGCAAAGGAGATAATCGCAATGGTTTTCACTTCCAGCGCGCCGCCCGTTTGCAGGTATGGGGAGAAAC                                                                 >  SRR4302536.1065154/1‑94 (MQ=60)
                             GAACCAAAGTTAGCAAAACCACAAAGCGCAAAGGAGATAATCGCAATGGTTTTCACTTCCAGCGCGCCGCCCGTTTGCAGGTATGGGGAGAAAC                                                                 <  SRR4302536.1610358/94‑1 (MQ=60)
                              AACCAAAGTTAGCAAAACCACAAAGCGCAAAGGAGATAATCGCAATGGTTTTCACTTCCAGCGCGCCGCCCGTTTGCAGGTATGGTGAGAAACT                                                                >  SRR4302536.3067903/1‑94 (MQ=60)
                              AACCAAAGTTAGCAAAACCACAAAGCGCAAAGGAGATAATCGCAATGGTTTTCACTTCCAGCGCGCCGCCCGTTTGCAGGTATGGGGAGAAACT                                                                <  SRR4302536.4543300/94‑1 (MQ=60)
                               ACCAAAGTTAGCAAAACCACAAAGCGCAAAGGAGATAATCGCAATGGTTTTCACTTCCAGCGCGCCGCCCGTTTGCAGGTATGGGGAGAAACTC                                                               >  SRR4302536.4523382/1‑94 (MQ=60)
                                CCAAAGTTAGCAAAACCACAAAGCGCAAAGGAGATAATCGCAATGGTTTTCACTTCCAGCGCGCCGCCCGTTTGCAGGTATGGGGAGAAACTCA                                                              <  SRR4302536.3023189/94‑1 (MQ=60)
                                  AAAGTTAGCAAAACCACAAAGCGCAAAGGAGATAATCGCAATGGTTTTCACTTCCAGCGCGCCGCCCGTTTGCAGGTATGGGGAGAAACTCAGG                                                            <  SRR4302536.2676039/94‑1 (MQ=60)
                                   AAGTTAGCAAAACCACAAAGCGCAAAGGAGATAATCGCAATGGTTTTCACTTCCAGCGCGCCGCCCGTTTGCAGGTATGGGGAGAAACTCAGGT                                                           >  SRR4302536.4977717/1‑94 (MQ=60)
                                   AAGTTAGCAAAACCACAAAGCGCAAAGGAGATAATCGCAATGGTTTTCACTTCCAGCGCGCCGCCCGTTTGCAGGTATGGGGAGAAACTCAGGT                                                           <  SRR4302536.3854083/94‑1 (MQ=60)
                                    AGTTAGCAAAACCACAAAGCGCAAAGGAGATAATCGCAATGGTTTTCACTTCCAGCGCGCCTCCCGTTTGCAGGTATGGGGAGAAACTCAGGTA                                                          <  SRR4302536.2397523/94‑1 (MQ=60)
                                    AGTTAGCAAAACCACAAAGCGCAAAGGAGATAATCGCAATGGTTTTCACTTCCAGCGCGCCGCCCGTTTGCAGGTATGGGGAGAAACTCAGGTA                                                          <  SRR4302536.2979741/94‑1 (MQ=60)
                                       TAGCAAAACCACAAAGCGCAAAGGAGATAATCGCAATGGTTTTCACTTCCAGCGCGCCGCCCGTTTGCAGGTATGGGGAGAAACTCAGGTAAGC                                                       <  SRR4302536.6676985/94‑1 (MQ=60)
                                       TAGCAAAACCACAAAGCGCAAAGGAGATAATCGCAATGGTTTTCACTTCCAGCGCGCCGCCCGTTTGCAGGTATGGGGAGAAACTCAGGTAAGC                                                       <  SRR4302536.1267196/94‑1 (MQ=60)
                                        AGCAAAACCACAAAGCGCAAAGGAGATAATCGCAATGGTTTTCACTTCCAGCGCGCCGCCCGTTTGCAGGTATGGGGAGAAACTCAGGTAAGCG                                                      <  SRR4302536.4556390/94‑1 (MQ=60)
                                        AGCAAAACCACAAAGCGCAAAGGAGATAATCGCAATGGTTTTCACTTCCAGCGCGCCGCCCGTTTGCAGGTATGGGGAGAAACTCAGGTAAGCG                                                      <  SRR4302536.6568793/94‑1 (MQ=60)
                                         GCAAAACCACAAAGCGCAAAGGAGATAATTGCAATGGTTTTCACTTCCAGCGCGCCGCCCGTTTGCAGGTATGGGGAGAAACTCAGGTAAGCGA                                                     <  SRR4302536.5422149/94‑1 (MQ=60)
                                          CAAAACCACAAAGCGCAAAGGAGATAATCGCAATGGTTTTCACTTCCAGCGCGCCGCCCGTTTGCAGGTATGGGGAGAAACTCAGGTAAGCGAC                                                    >  SRR4302536.6672615/1‑94 (MQ=60)
                                           AAAACCACAAAGCGCAAAGGAGATAATCGCAATGGTTTTCACTTCCAGCGCGCCGCCCGTTTGCAGGTATGGGGAGGAACTCAGGTAAGCGACG                                                   >  SRR4302536.6591657/1‑94 (MQ=60)
                                           AAAACCACAAAGCGCAAAGGAGATAATCGCAATGGTTTTCACTTCCAGCGCGCCGCCCGTTTGCAGGTATGGGGAGAAACTCAGGTAAGCGACG                                                   <  SRR4302536.3998182/94‑1 (MQ=60)
                                            AAACCACAAAGCGCAAAGGAGATAATCGCAATGGTTTTCACTTCCAGCGCGCCGCCCGTTTGCAGGTATGGGGAGAAACTCAGGTAAGCGACGA                                                  <  SRR4302536.3809227/94‑1 (MQ=60)
                                              ACCACAAAGCGCAAAGGAGATAATCGCAATGGTTTTCACTTCCAGCGCGCCGCCCGTTTGCAGGTATGGGGAGAAACTCAGGTAAGCGACGAAT                                                >  SRR4302536.6355166/1‑94 (MQ=60)
                                              ACCACAAAGCGCAAAGGAGATAATCGCAATGGTTTTCACTTCCAGCGCGCCGCCCGTTTGCAGGTATGGGGAGAAACTCAGGTAAGCGACGAAT                                                >  SRR4302536.5454574/1‑94 (MQ=60)
                                                CACAAAGCGCAAAGGAGATAATCGCAATGGTTTTCACTTCCAGCGCGCCGCCCGTTTGCAGGTATGGGGAGAAACTCAGGTAAGCGACGAATTC                                              <  SRR4302536.2865856/94‑1 (MQ=60)
                                                CACAAAGCGCAAAGGAGATAATCGCAATGGTTTTCACTTCCAGCGCGCCGCCCGTTTGCAGGTATGGGGAGAAACTCAGGTAAGCGACGAATTC                                              >  SRR4302536.73691/1‑94 (MQ=60)
                                                CACAAAGCGCAAAGGAGATAATCGCAATGGTTTTCACTTCCAGCGCGCCGCCCGTTTGCAGGTATGGGGAGAAACTCAGGTAAGCGACGAATTC                                              <  SRR4302536.5050968/94‑1 (MQ=60)
                                                CACAAAGCGCAAAGGAGATAATCGCAATGGTTTTCACTTCCAGCGCGCCGCCCGTTTGCAGGTATGGGGAGAAACTCAGGTAAGCGACGAATTC                                              >  SRR4302536.3255615/1‑94 (MQ=60)
                                                 ACAAAGCGCAAAGGAGATAATCGCAATGGTTTTCACTTCCAGCGCGCCGCCCGTTTGCAGGTATGGGGAGAAACTCAGGTAAGCGACGAATTCG                                             <  SRR4302536.2689649/94‑1 (MQ=60)
                                                  CAAAGCGCAAAGGAGATAATCGCAATGGTTTTCACTTCCAGCGCGCCGCCCGTTTGCAGGTATGGGGAGAAACTCAGGTAAGCGACGAATTCGT                                            <  SRR4302536.4614714/94‑1 (MQ=60)
                                                  CAAAGCGCAAAGGAGATAATCGCAATGGTTTTCACTTCCAGCGCGCCGCCCGTTTGCAGGTATGGGGAGAAACTCAGGTAAGCGACGAATTCGT                                            >  SRR4302536.6312950/1‑94 (MQ=60)
                                                   AAAGCGCAAAGGAGATAATCGCAATGGTTTTCACTTCCAGCGCGCCGCCCGTTTGCAGGTATGGGGAGAAACTCAGGTAAGCGACGAATTCGTT                                           <  SRR4302536.536483/94‑1 (MQ=60)
                                                   AAAGCGCAAAGGAGATAATCGCAATGGTTTTCACTTCCAGCGCGCCGCCCGTTTGCAGGTATGGGGAGAAACTCAGGTAAGCGACGAATTCGTT                                           >  SRR4302536.6628612/1‑94 (MQ=60)
                                                   AAAGCGCAAAGGAGATAATCGCAATGGTTTTCACTTCCAGCGCGCCGCCCGTTTGCAGGTATGGGGAGAAACTCAGGTAAGCGACGAATTCGTT                                           >  SRR4302536.4449109/1‑94 (MQ=60)
                                                    AAGCGCAAAGGAGATAATCGCAATGGTTTTCACTTCCAGCGCGCCGCCCGTTTGCAGGTATGGGGAGAAACTCAGGTAAGCGACGAATTCGTTA                                          <  SRR4302536.4765495/94‑1 (MQ=60)
                                                    AAGCGCAAAGGAGATAATCGCAATGGTTTTCACTTCCAGCGCGCCGCCCGTTTGCAGGTATGGGGAGAAACTCAGGTAAGCGACGAATTCGTTA                                          <  SRR4302536.6189937/94‑1 (MQ=60)
                                                    AAGCGCAAAGGAGATAATCGCAATGGTTTTCACTTCCAGCGCGCCGCCCGTTTGCAGGTATGGGGAGAAACTCAGGTAAGCGACGAATTCGTTA                                          >  SRR4302536.4121692/1‑94 (MQ=60)
                                                     AGCGCAAAGGAGATAATCGCAATGGTTTTCACTTCCAGCGCGCCGCCCGTTTGCAGGTATGGGGAGAAACTCAGGTAAGCGACGAATTCGTTAA                                         >  SRR4302536.1800622/1‑94 (MQ=60)
                                                      GCGCAGAGGAGATAATCGCAATGGTTTTCACTTCCAGCGCGCCGCCCGTTTGCAGGTATGGGGAGAAACTCAGGTAAGCGACGAATTCGTTAAT                                        <  SRR4302536.5673706/94‑1 (MQ=60)
                                                      GCGCAAAGGAGATAATCGCAATGGTTTTCACTTCCAGCGCGCCGCCCGTTTGCAGGTATGGGGAGAAACTCAGGTAAGCGACGAATTCGTTAAT                                        <  SRR4302536.1284837/94‑1 (MQ=60)
                                                       CGCAAAGGAGATAATCGCAATGGTTTTCACTTCCAGCGCGCCGCCCGTTTGCAGGTATGGGGAGAAACTCAGGTAAGCGACGAATTCGTTAATC                                       >  SRR4302536.4318186/1‑94 (MQ=60)
                                                        GCAAAGGATATAATCCCAATGGTTTTCACTTCCAGCGCGCCGCCCGTTTGCAGGTATGGTGAGAATCTCATGTAAGCGACGAATTCGTTAATCG                                      <  SRR4302536.1060222/94‑1 (MQ=60)
                                                        GCAAAGGAGATAATCGCAATGGTTTTCACTTCCAGCGCGCCGCCCGTTTGCAGGTATGGGGAGAAACTCAGGTAAGCGACGAATTCGTTAATCG                                      <  SRR4302536.3858478/94‑1 (MQ=60)
                                                         CAAAGGAGATAATCGCAATGGTTTTCACTTCCAGCGCGCCGCCCGTTTGCAGGTATGGGGAGAAACTCAGGTAAGCGACGAATTCGTTAATCGC                                     >  SRR4302536.2041810/1‑94 (MQ=60)
                                                          AAAGGAGATAATCGCAATGGTTTTCACTTCCAGCGCGCCGCCCGTTTGCAGGTATGGGGAGAAACTCAGGTAAGCGACGAATTCGTTAATCGCC                                    >  SRR4302536.2950083/1‑94 (MQ=60)
                                                           AAGGAGATAATCGCAATGGTTTTCACTTCCAGCGCGCCGCCCGTTTGCAGGTATGGGGAGAAACTCAGGTAAGCGACGAATTCGTTAATCGCCA                                   <  SRR4302536.2177269/94‑1 (MQ=60)
                                                            AGGAGATAATCGCAATGGTTTTCACTTCCAGCGCGCCGCCCGTTTGCAGGTATGGGGAGAAACTCAGGTAAGCGACGAATTCGTTAATCGCCAG                                  <  SRR4302536.2249011/94‑1 (MQ=60)
                                                            AGGAGATAATCGCAATGGTTTTCACTTCCAGCGCGCCGCCCGTTTGCAGGTATGGGGAGAAACTCAGGTAAGCGACGAATTCGTTAATCGCCAG                                  <  SRR4302536.378806/94‑1 (MQ=60)
                                                            AGGAGATAATCGCAATGGTTTTCACTTCCAGCGCGCCGCCCGTTTGCAGGTATGGGGAGAAACTCAGGTAAGCGACGAATTCGTTAATCGCCAG                                  >  SRR4302536.5726987/1‑94 (MQ=60)
                                                             GGAGATAATCGCAATGGTTTTCACTTCCAGCGCGCCGCCCGTTTGCAGGTATGGGGAGAAACTCAGGTAAGCGACGAATTCGTTAATCGCCAGT                                 >  SRR4302536.3817607/1‑94 (MQ=60)
                                                             GGAGATAATCGCAATGGTTTTCACTTCCAGCGCGCCGCCCGTTTGCAGGTATGGGGAGAAACTCAGGTAAGCGACGAATTCGTTAATCGCCAGT                                 <  SRR4302536.5476540/94‑1 (MQ=60)
                                                             GGAGATAATCGCAATGGTTTTCACTTCCAGCGCGCCGCCCGTTTGCAGGTATGGGGAGAAACTCAGGTAAGCGACGAATTCGTTAATCGCCAGT                                 <  SRR4302536.4298591/94‑1 (MQ=60)
                                                              GAGATAATCGCAATGGTTTTCACTTCCAGCGCGCCGCCCGTTTGCAGGTATGGGGAGAAACTCAGGTAAGCGACGAATTCGTTAATCGCCAGTT                                <  SRR4302536.6103931/94‑1 (MQ=60)
                                                              GAGATAATCGCAATGGTTTTCACTTCCAGCGCGCCGCCCGTTTGCAGGTATGGGGAGAAACTCAGGTAAGCGACGAATTCGTTAATCGCCAGTT                                >  SRR4302536.3886041/1‑94 (MQ=60)
                                                                 ATAATCGCAATGGTTTTCACTTCCAGCGCGCCGCCCGTTTGCAGGTATGGGGAGAAACTCAGGTAAGCGACGAATTCGTTAATCGCCAGTTTCT                             >  SRR4302536.4514188/1‑94 (MQ=60)
                                                                 ATAATCGCAATGGTTTTCACTTCCAGCGCGCCGCCCGTTTGCAGGTATGGGGAGAAACTCAGGTAAGCGACGAATTCGTTAATCGCCAGTTTCT                             >  SRR4302536.4564460/1‑94 (MQ=60)
                                                                 ATAATCGCAATGGTTTTCACTTACAGCGCGTCGCCCGTTTGCAGGAATGGGGAGCAACTCAGGTAAGCGACGAATTCGTTAATCTCCAGTTTCT                             >  SRR4302536.3431705/1‑94 (MQ=60)
                                                                  TAATCGCAATGGTTTTCACTTCCAGCGCGCCGCCCGTTTGCAGGTATGGGGAGAAACTCAGGTAAGCGACGAATTCGTTAATCGCCAGTTTCTG                            <  SRR4302536.1139714/94‑1 (MQ=60)
                                                                  TAATCGCAATGGTTTTCACTTCCAGCGCGCCGCCCGTTTGCAGGTATGGGGAGAAACTCAGGTAAGCGACGAATTCGTTAATCGCCAGTTTCTG                            <  SRR4302536.615615/94‑1 (MQ=60)
                                                                  TAATCGCAATGGTTTTCACTTCCAGCGCGCCGCCCGTTTGCAGGTATGGGGAGAAACTCAGGTAAGCGACGAATTCGTTAATCGCCAGTTTCTG                            <  SRR4302536.6538752/94‑1 (MQ=60)
                                                                   AATCGCAATGGTTTTCACTTCCAGCGCGCCGCCCGTTTGCAGGTATGGGGAGAAACTCAGGTAAGCGACGAATTCGTTAATCGCCAGTTTCTGC                           >  SRR4302536.1454773/1‑94 (MQ=60)
                                                                    ATCGCAATGGTTTTCACTTCCAGCGCGCCGCCCGTTTGCAGGTATGGGGAGAAACTCAGGTAAGCGACGAATTCGTTAATCGCCAGTTTCTGCC                          >  SRR4302536.845717/1‑94 (MQ=60)
                                                                     TCGCAATGGTTTTCACTTCCAGCGCGCCGCCCGTTTGCAGGTATGGGGAGAAACTCAGGTAAGCGACGAATTCGTTAATCGCCAGTTTCTGCCC                         <  SRR4302536.3324557/94‑1 (MQ=60)
                                                                     TCGCAATGGTTTTCACTTCCAGCGCGCCGCCCGTTTGCAGGTATGGGGAGAAACTCAGGTAAGCGACGAATTCGTTAATCGCCAGTTTCTGCCA                         <  SRR4302536.2318488/94‑1 (MQ=60)
                                                                      CGCAATGGTTTTCACTTCCAGCGCGCCGCCCGTTTGCAGGTATGGGGAGAAACTCAGGTAAGCGACGAATTCGTTAATCGCCAGTTTCTGCCCA                        >  SRR4302536.636449/1‑94 (MQ=60)
                                                                      CGCAATGGTTTTCACTTCCAGCGCGCCGCCCGTTTGCAGGTATGGGGAGAAACTCAGGTAAGCGACGAATTCGTTAATCGCCAGTTTCTGCCCA                        <  SRR4302536.861353/94‑1 (MQ=60)
                                                                        CAATGGTTTTCACTTCCAGCGCGCCGCCCGTTTGCAGGTATGGGGAGAAACTCAGGTAAGCGACGAATTCGTTAATCGCCAGTTTCTGCCCAAT                      <  SRR4302536.1607194/94‑1 (MQ=60)
                                                                         AATGGTTTTCACTTCCAGCGCGCCGCCCGTTTGCAGGTATGGGGAGAAACTCAGGTAAGCGACGAATTCGTTAATCGCCAGTTTCTGCCCAATC                     >  SRR4302536.6530760/1‑94 (MQ=60)
                                                                         AATGGTTTTCACTTCCAGCGCGCCGCCCGTTTGCAGGTATGGGGAGAAACTCAGGTAAGCGACGAATTCGTTAATCGCCAGTTTCTGCCCAATC                     >  SRR4302536.37151/1‑94 (MQ=60)
                                                                         AATGGTTTTCACTTCCAGCGCGCCGCCCGTTTGCAGGTATGGGGAGAAACTCAGGTAAGCGACGAATTCGTTAATCGCCAGTTTCTGCCCAATC                     >  SRR4302536.778787/1‑94 (MQ=60)
                                                                          ATGGTTTTCACTTCCAGCGCGCCGCCCGTTTGCAGGTATGGGGAGAAACTCAGGTAAGCGACGAATTCGTTAATCGCCAGTTTCTGCCCAATCA                    >  SRR4302536.5567119/1‑94 (MQ=60)
                                                                           TTGTTTTCGCTTCCAGCGCGCCGCCCGTTTGCAGGTATGGGGAGAAACTCAGGTAAGCGACGAATTCGTTAATCGCCAGTTTCTGCCCAATCAG                   <  SRR4302536.5510887/94‑1 (MQ=60)
                                                                            GGTTTTCACTTCCAGCGCGCCGCCCGTTTGCAGGTATGGGGAGAAACTCAGGTAAGCGACGAATTCGTTAATCGCCAGTTTCTGCCCAATCAGG                  >  SRR4302536.3528644/1‑94 (MQ=60)
                                                                            GGTTTTCACTTCCAGCGCGCCGCCCGTTTGCAGGTATGGGGAGAAACTCAGGTAAGCGACGAATTCGTTAATCGCCAGTTTCTGCCCAATCAGG                  <  SRR4302536.3162399/94‑1 (MQ=60)
                                                                             GTTTTCACTTCCCGCGCGCCGCCCGTTTGCAGGTATGGGGAGAAACTCAGGTAAGCGACGAATTCGTTAATCGGCAGTTTCTGCCCAATCAGGA                 >  SRR4302536.6381848/1‑94 (MQ=60)
                                                                              TTTTCACTTCCAGCGCGCCGCCCGTTTGCAGGTATGGGGAGAAACTCAGGTAAGCGACGAATTCGTTAATCGCCAGTTTCTGCCCAATCAGGCT                <  SRR4302536.6033391/94‑1 (MQ=60)
                                                                                 TCACTTCCAGCGCGCCGCCCGTTTGCAGGTATGGGGAGAAACTCAGGTAAGCGACGAATTCGTTAATCGCCAGTTTCTGCCCAATCAGGCTACC             >  SRR4302536.1219784/1‑94 (MQ=60)
                                                                                 TCACTTCCAGCGCGCCGCCCGTTTGCAGGTATGGGGAGAAACTCAGGTAAGCGACGAATTCGTTAATCGCCAGTTTCTGCCCAATCAGGCTACC             >  SRR4302536.2903803/1‑94 (MQ=60)
                                                                                 TCACTTCCAGCGCGCCGCCCGTTTGCAGGTATGGGGAGAAACTCAGGTAAGCGACGAATTCGTTAATCGCCAGTTTCTGCCCAATCAGGCTACC             <  SRR4302536.5360362/94‑1 (MQ=60)
                                                                                   ACTTCCAGCGCGCCGCCCGTTTGCAGGTATGGGGAGAAACTCAGGTAAGCGACGAATTCGTTAATCGCCAGTTTCTGCCCAATCAGGCTACCCG           <  SRR4302536.5748050/94‑1 (MQ=60)
                                                                                    CTTCCAGCGCGCCGCCCGTTTGCAGGTATGGGTAGAAACTCAGGTAAGCGACGAATTCGTTAATCGCCAGTTTCTGCCCAATCAGGCTACCCGC          >  SRR4302536.4987746/1‑94 (MQ=60)
                                                                                    CTTCCAGCGCGCCGCCCGTTTGCAGGTATGGGGAGAAACTCAGGTAAGCGACGAATTCGTTAATCGCCAGTTTCTGCCCAATCAGGCTACCCGC          <  SRR4302536.703087/94‑1 (MQ=60)
                                                                                       CCAGCGCGCCGCCCGTTTGCAGGTATGGGGAGAAACTCAGGTAAGCGACGAATTCGTTAATCGCCAGTTTCTGCCCAATCAGGCTACCCGCAAG       <  SRR4302536.6515055/94‑1 (MQ=60)
                                                                                       CCAGCGCGCCGCCCGTTTGCAGGTATGGGGAGAAACTCAGGTAAGCGACGAATTCGTTAATCGCCAGTTTCTGCCCAATCAGGCTACCCGCAAG       >  SRR4302536.873186/1‑94 (MQ=60)
                                                                                       CCAGCGCGCCGCCCGTTTGCAGGTATGGGGAGAAACTCAGGTAAGCGACGAATTCGTTAATCGCCAGTTTCTGCCCAATCAGGCTACCCGCAAG       <  SRR4302536.5208204/94‑1 (MQ=60)
                                                                                       CCAGCGCGCCGCCCGTTTGCAGGTATGGGGAGAAACTCAGGTAAGCGACGAATTCGTTAATCGCCAGTTTCTGCCCAATCAGGCTACCCGCAAG       <  SRR4302536.1753244/94‑1 (MQ=60)
                                                                                       CCAGCGCGCCGCCCGTTTGCAGGTATGGGGAGAAACTCAGGCAAGCGACGAATTCGTTAATCGCCACTTTCTGCCCAATCAGGCTACCCGCAAG       >  SRR4302536.5588649/1‑94 (MQ=60)
                                                                                         AGCGCGCCGCCCGTTTGCAGGTATGGGGAGAAACTCAGGTAAGCGACGAATTCGTTAATCGCCAGTTTCTGCCCAATCAGGCTACCCGCAAGAT     >  SRR4302536.4874458/1‑94 (MQ=60)
                                                                                         AGCGCGCCGCCCGTTTGCAGGTATGGGGAGAAACTCAGGTAAGCGACGAATTCGTTAATCGCCAGTTTCTGCCCAATCAGGCTACCCGCAAGAT     >  SRR4302536.5594951/1‑94 (MQ=60)
                                                                                         AGCGCGCCGCCCGTTTGCAGGTATGGGGAGAAACTCAGGTAAGCGACGAATTCGTTAATCGCCAGTTTCTGCCCAATCAGGCTACCCGCAAGAT     <  SRR4302536.5749975/94‑1 (MQ=60)
                                                                                         AGCGCGCCGCCCGTTTGCAGGTATGGGGAGAAACTCAGGTAAGCGACGAATTCGTTAATCGCCAGTTTCTGCCCAATCAGGCTACCCGCAAGAT     >  SRR4302536.4063160/1‑94 (MQ=60)
                                                                                         AGCGCGCCGCCCGTTTGCAGGTATGGGGAGAAACTCAGGTAAGCGACGAATTCGTTAATCGCCAGTTTCTGCCCAATCAGGCTACCCGCAAGAT     >  SRR4302536.2152247/1‑94 (MQ=60)
                                                                                         AGCGCGCCGCCCGTTTGCAGGTATGGGGAGAAACTCAGGTAAGCGACGAATTCGTTAATCGCCAGTTTCTGCCCAATCAGGCTACCCGCAAGAT     <  SRR4302536.3493448/94‑1 (MQ=60)
                                                                                          GCGCGCCGCCCGTTTGCAGGTATGGGGAGAAACTCAGGTAAGCGACGAATTCGTTAATCGCCAGTTTCTGCCCAATCAGGCTACCCGCAAGATT    <  SRR4302536.4295035/94‑1 (MQ=60)
                                                                                          GCGCGCCGCCCGTTTGCAGGTATGGGGAGAAACTCAGGTAAGCGACGAATTCGTTAATCGCCAGTTTCTGCCCAATCAGGCTACCCGCAAGATT    <  SRR4302536.3215175/94‑1 (MQ=60)
                                                                                          GCGCGCCGCCCGTTTGCAGGTATGGGGAGAAACTCAGGTAAGCGACGAATTCGTTAATCGCCAGTTTCTGCCCAATCAGGCTACCCGCAAGATT    <  SRR4302536.60748/94‑1 (MQ=60)
                                                                                           CGCGCCGCCCGTTTGCAGGTATGGGGAGAAACTCAGGTAAGCGACGAATTCGTTAATCGCCAGTTTCTGCCCAATCAGGCTACCCGCAAGATTG   >  SRR4302536.4162487/1‑94 (MQ=60)
                                                                                            GCGCCGCCCGTTTGCAGGTATGGGGAGAAACTCAGGTAAGCGACGAATTCGTTAATCGCCAGTTTCTGCCCAATCAGGCTACCCGCAAGATTGG  <  SRR4302536.2473761/94‑1 (MQ=60)
                                                                                             |                                                                                            
CCGAAAATGCGCCAACGACAACACCGATAGAACCAAAGTTAGCAAAACCACAAAGCGCAAAGGAGATAATCGCAATGGTTTTCACTTCCAGCGTGCCGCCCGTTTGCAGGTATGGGGAGAAACTCAGGTAAGCGACGAATTCGTTAATCGCCAGTTTCTGCCCAATCAGGCTACCCGCAAGATTGG  >  NC_000913/2254224‑2254409

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑