Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 1475 266.7 13469680 98.2% 13227225 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,276,343 T→C intergenic (‑86/+247) yejG ← / ← bcr hypothetical protein/bicyclomycin resistance protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,276,3430TC100.0% 824.9 / NA 249intergenic (‑86/+247)yejG/bcrhypothetical protein/bicyclomycin resistance protein
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (134/115);  total (134/115)

Only 100 of 250 total aligned reads displayed.

GTCACTTATTTTCCCCGGAAGCACATTCACTTCACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGTAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCTGCGGGCGTGGTCACGTTTGCGGGGCTATATGTACC  >  NC_000913/2276253‑2276432
                                                                                          |                                                                                         
gTCACTTATTTTCCCCGGAAGCACATTCACTTCACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCaa                                                                                         >  1:195862/1‑93 (MQ=255)
gTCACTTATTTTCCCCGGAAGCACATTCACTTCACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCaa                                                                                         >  2:3586624/1‑93 (MQ=255)
 tCACTTATTTTCCCCGGAAGCACATTCACTTCACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCaaa                                                                                        >  1:5779271/1‑93 (MQ=255)
   aCTTATTTTCCCCGGAAGCACATTCACTTCACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGa                                                                                      <  1:791686/93‑1 (MQ=255)
   aCTTATTTTCCCCGGAAGCACATTCACTTCACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGa                                                                                      <  1:3877554/93‑1 (MQ=255)
   aCTTATTTTCCCCGGAAGCACATTCACTTCACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGa                                                                                      >  2:5273103/1‑93 (MQ=255)
     ttATTTTCCCCGGAAGCACATTCACTTCACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGAtt                                                                                    >  1:1265253/1‑93 (MQ=255)
     ttATTTTCCCCGGAAGCACATTCACTTCACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGAtt                                                                                    >  2:2898562/1‑93 (MQ=255)
     ttATTTTCCCCGGAAGCACATTCACTTCACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGAtt                                                                                    <  2:3299712/93‑1 (MQ=255)
       aTTTTCCCCGGAAGCACATTCACTTCACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGa                                                                                  <  2:2849529/93‑1 (MQ=255)
       aTTTTCCCCGGAAGCACATTCACTTCACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGa                                                                                  >  2:4686396/1‑93 (MQ=255)
        ttttCCCCGGAAGCACATTCACTTCACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGAt                                                                                 <  1:586232/93‑1 (MQ=255)
         tttCCCCGGAAGCACATTCACTTCACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATg                                                                                >  1:4254719/1‑93 (MQ=255)
           tCCCCGGAAGCACATTCACTTCACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGcc                                                                              >  2:1164341/1‑93 (MQ=255)
            ccccGGAAGCACATTCACTTCACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCt                                                                             <  2:4926510/93‑1 (MQ=255)
             cccGGAAGCACATTCACTTCACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTc                                                                            <  2:5480981/93‑1 (MQ=255)
              ccGGAAGCACATTCACTTCACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCg                                                                           >  2:4466669/1‑93 (MQ=255)
               cGGAAGCACATTCACTTCACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGc                                                                          <  1:3967577/93‑1 (MQ=255)
                 gAAGCACATTCACTTCACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCt                                                                        >  2:5902719/1‑93 (MQ=255)
                 gAAGCACATTCACTTCACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCt                                                                        >  2:2219674/1‑93 (MQ=255)
                  aaGCACATTCACTTCACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTg                                                                       >  1:5272427/1‑93 (MQ=255)
                   aGCACATTCACTTCACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGc                                                                      >  1:5450058/1‑93 (MQ=255)
                   aGCACATTCACTTCACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGc                                                                      >  2:2770052/1‑93 (MQ=255)
                   aGCACATTCACTTCACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCCGc                                                                      >  1:6660645/1‑93 (MQ=255)
                      acaTTCACATCACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTg                                                                   >  1:6556230/1‑93 (MQ=255)
                       caTTCACTTCACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTgg                                                                  <  1:3433142/93‑1 (MQ=255)
                       caTTCACTTCACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTgg                                                                  >  2:584366/1‑93 (MQ=255)
                       caTTCACTTCACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTgg                                                                  >  1:2031034/1‑93 (MQ=255)
                        aTTCACTTCACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGc                                                                 >  1:3281500/1‑93 (MQ=255)
                        aTTCACTTCACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGc                                                                 >  1:3127620/1‑93 (MQ=255)
                        aTTCACTTCACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGc                                                                 >  2:4841459/1‑93 (MQ=255)
                         ttcacttcacAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGcc                                                                <  1:2953224/93‑1 (MQ=255)
                         atcacttcacAATTTGTTTACATCAATTGTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGcc                                                                <  2:3392897/92‑1 (MQ=255)
                           cacttcacAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCctc                                                              >  2:477253/1‑93 (MQ=255)
                            acttcacAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCctct                                                             >  1:4318231/1‑93 (MQ=255)
                            acttcacAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCctct                                                             >  2:215721/1‑93 (MQ=255)
                            acttcacAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCctct                                                             >  2:6345985/1‑93 (MQ=255)
                             cttcacAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTa                                                            <  2:694207/93‑1 (MQ=255)
                             cttcacAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTa                                                            <  1:1070866/93‑1 (MQ=255)
                             cttcacAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTa                                                            <  1:4717311/93‑1 (MQ=255)
                              ttcacAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTAt                                                           <  1:657062/93‑1 (MQ=255)
                              ttcacAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTAt                                                           >  2:1686899/1‑93 (MQ=255)
                               tcacAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATg                                                          <  2:4442927/93‑1 (MQ=255)
                                 acaATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGc                                                        <  1:1205183/93‑1 (MQ=255)
                                 acaATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGc                                                        <  2:4049012/93‑1 (MQ=255)
                                  caATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGct                                                       >  1:1359495/1‑93 (MQ=255)
                                  caATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGct                                                       <  1:2602765/93‑1 (MQ=255)
                                   aaTTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGctc                                                      >  2:6208987/1‑93 (MQ=255)
                                   aaTTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGctc                                                      >  2:2446202/1‑93 (MQ=255)
                                    aTTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCTCCTGCGTGGCCTCTATGGctct                                                     >  2:2611751/1‑93 (MQ=255)
                                    aTTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGctct                                                     <  2:5090175/93‑1 (MQ=255)
                                    aTTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGctct                                                     <  1:1829019/93‑1 (MQ=255)
                                     tttGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGTCTGCGTGGCCTCTATGGCTCTg                                                    >  1:2383502/1‑93 (MQ=255)
                                       tGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGAt                                                  <  2:3546327/93‑1 (MQ=255)
                                         tttACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGAttt                                                <  2:1499452/93‑1 (MQ=255)
                                         tttACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGAttt                                                >  2:5587253/1‑93 (MQ=255)
                                          ttACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTa                                               >  2:6133743/1‑93 (MQ=255)
                                            aCATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGTCTCTATGGCTCTGATTTAAg                                             <  1:5441479/93‑1 (MQ=255)
                                            aCATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAg                                             <  2:1681573/93‑1 (MQ=255)
                                             cATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGt                                            <  2:4075268/93‑1 (MQ=255)
                                              aTCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTa                                           >  1:421830/1‑93 (MQ=255)
                                              aTCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTa                                           >  1:4980481/1‑93 (MQ=255)
                                               tCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTaa                                          <  2:1085011/93‑1 (MQ=255)
                                               tCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTaa                                          <  1:2820784/93‑1 (MQ=255)
                                                 aaTTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGTCCTCTTTGGCTCTGATTTAAGTAata                                        <  1:6454447/93‑1 (MQ=255)
                                                  aTTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAatat                                       >  1:988181/1‑93 (MQ=255)
                                                   ttttAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATc                                      <  1:6426409/93‑1 (MQ=255)
                                                    tttAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCt                                     <  1:1013199/93‑1 (MQ=255)
                                                    tttAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCt                                     <  1:1656345/93‑1 (MQ=255)
                                                     ttAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCTg                                    >  1:4101757/1‑93 (MQ=255)
                                                       aaCACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCTGCg                                  >  1:1938893/1‑93 (MQ=255)
                                                        acacATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCTGCgg                                 <  1:6184741/93‑1 (MQ=255)
                                                         cacaTCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCTGCggg                                >  2:5239228/1‑93 (MQ=255)
                                                          acaTCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCTGCggga                               >  1:2129888/1‑92 (MQ=255)
                                                           catcatCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCTGCGGGCg                              >  1:4057561/1‑93 (MQ=255)
                                                              catcaACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCTGCGGGCGTgg                           >  2:5726064/1‑93 (MQ=255)
                                                               atcaACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCTGCGGGCGTGGt                          >  1:3661168/1‑93 (MQ=255)
                                                               atcaACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCTGCGGGCGTGGt                          >  2:3924699/1‑93 (MQ=255)
                                                                tcaACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCTGCGGGCGTGGTc                         <  1:2283289/93‑1 (MQ=255)
                                                                 caacaaTCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCTGCGGGCGTGGTCa                        >  1:5054505/1‑93 (MQ=255)
                                                                 caacaaTCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCTGCGGGCGTGGTCa                        <  2:4629405/93‑1 (MQ=255)
                                                                 caacaaTCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCTGCGGGCGTGGTCa                        >  2:2334080/1‑93 (MQ=255)
                                                                   acaaTCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCTGCGGGCGTGGTCACg                      >  2:6620511/1‑93 (MQ=255)
                                                                   acaaTCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCTGCGGGCGTGGTCACg                      >  2:6422121/1‑93 (MQ=255)
                                                                      aTCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCTGCGGGCGTGGTCACGttt                   <  1:2691621/93‑1 (MQ=255)
                                                                      aTCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCTGCGGGCGTGGTCACGttt                   >  1:2896860/1‑93 (MQ=255)
                                                                       tCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCTGCGGGCGTGGTCACGTTTg                  >  2:195487/1‑93 (MQ=255)
                                                                       tCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCTGCGGGCGTGGTCACGGTTg                  >  1:3411351/1‑93 (MQ=255)
                                                                         cGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCTGCGGGCGTGGTCACGTTTGCg                <  2:3714493/93‑1 (MQ=255)
                                                                           tCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCTGCGGGCGTGGTCACGTTTGCggg              >  1:3708986/1‑93 (MQ=255)
                                                                            cTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCTGCGGGCGTGGTCACGTTTGCgggg             <  1:5939512/93‑1 (MQ=255)
                                                                             tttATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCTGCGGGCGTGGTCACGTTTGCGGGGc            <  2:5381829/93‑1 (MQ=255)
                                                                              ttATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCTGCGGGCGTGGTCACGTTTGCGGGGCt           >  1:1341824/1‑93 (MQ=255)
                                                                                ataCAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCTGCGGGCGTGGTCACGTTTGCGGGGCtat         <  2:3863838/93‑1 (MQ=255)
                                                                                 taCAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCTGCGGGCGTGGTCACGTTTGCGGGGCtata        <  1:4372638/93‑1 (MQ=255)
                                                                                 taCAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCTGCGGGCGTGGTCACGTTTGCGGGGCtata        <  2:3629064/93‑1 (MQ=255)
                                                                                     gATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCTGCGGGCGTGGTCACGTTTGCGGGGCTATATGTa    >  1:2720956/1‑93 (MQ=255)
                                                                                     gATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCTGCGGGCGTGGTCACGTTTGCGGGGCTATATGTa    >  1:5172874/1‑93 (MQ=255)
                                                                                      aTCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCTGCGGGCGTGGTCACGTTTGCGGGGCTATATGTAc   >  1:4901891/1‑93 (MQ=255)
                                                                                       tCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCTGCGGGCGTGGTCACGTTTGCGGGGCTATATGTAcc  <  2:304849/93‑1 (MQ=255)
                                                                                          |                                                                                         
GTCACTTATTTTCCCCGGAAGCACATTCACTTCACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGTAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCTGCGGGCGTGGTCACGTTTGCGGGGCTATATGTACC  >  NC_000913/2276253‑2276432

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
GAAGTCACTTATTTTCCCCGGAAGCACATTCACTTCACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGTAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCTGCGGGCGTGGTCACGTTTGCGGGGCTATATGTACCCGTT  >  NC_000913/2276250‑2276436
                                                                                             |                                                                                             
GAAGTCACTTATTTTCCCCGGAAGCACATTCACTTCACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGC                                                                                               >  SRR4302536.783062/1‑94 (MQ=60)
 AAGTCACTTATTTTCCCCGGAAGCACATTCACTTCACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCA                                                                                              >  SRR4302536.2605017/1‑94 (MQ=60)
 AAGTCACTTATTTTCCCCGGAAGCACATTCACTTCACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCA                                                                                              >  SRR4302536.6457818/1‑94 (MQ=60)
  AGTCACTTATTTTCCCCGGAAGCACATTCACTTCACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAA                                                                                             >  SRR4302536.201013/1‑94 (MQ=60)
  AGTCACTTATTTTCCCCGGAAGCACATTCACTTCACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAA                                                                                             >  SRR4302536.2781463/1‑94 (MQ=60)
   GTCACTTATTTTCCCCGGAAGCACATTCACTTCACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAA                                                                                            >  SRR4302536.5951262/1‑94 (MQ=60)
     CACTTATTTTCCCCGGAAGCACATTCACTTCACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCACAGA                                                                                          >  SRR4302536.3545265/1‑94 (MQ=60)
      ACTTATTTTCCCCGGAAGCACATTCACTTCACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGAT                                                                                         <  SRR4302536.3992922/94‑1 (MQ=60)
      ACTTATTTTCCCCGGAAGCACATTCACTTCACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGAT                                                                                         <  SRR4302536.5587380/94‑1 (MQ=60)
      ACTTATTTTCCCCGGAAGCACATTCACTTCACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGAT                                                                                         <  SRR4302536.814887/94‑1 (MQ=60)
       CTTATTTTCCCCGGAAGCACATTCACTTCACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATT                                                                                        >  SRR4302536.1303180/1‑94 (MQ=60)
       CTTATTTTCCCCGGAAGCACATTCACTTCACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATT                                                                                        >  SRR4302536.2039100/1‑94 (MQ=60)
       CTTATTTTCCCCGGAAGCACATTCACTTCACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATT                                                                                        <  SRR4302536.233822/94‑1 (MQ=60)
        TTATTTTCCCCGGAAGCACATTCACTTCACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTG                                                                                       <  SRR4302536.2447430/94‑1 (MQ=60)
           TTTTCCCCGGAAGCACATTCACTTCACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATG                                                                                    >  SRR4302536.4381474/1‑94 (MQ=60)
           TTTTCCCCGGAAGCACATTCACTTCACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATG                                                                                    <  SRR4302536.4364513/94‑1 (MQ=60)
           TTTTCCCCGGAAGCACATTCACTTCACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATG                                                                                    <  SRR4302536.601303/94‑1 (MQ=60)
           TTTTCCCCGGAAGCACATTCACTTCACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATG                                                                                    <  SRR4302536.1102234/94‑1 (MQ=60)
             TTCCCCGGAAGCACATTCACTTCACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCC                                                                                  >  SRR4302536.4395118/1‑94 (MQ=60)
              TCCCCGGAAGCACATTCACTTCACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCT                                                                                 >  SRR4302536.2653264/1‑94 (MQ=60)
              TCCCCGGAAGCACATTCACTTCACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCT                                                                                 >  SRR4302536.6484230/1‑94 (MQ=60)
               CCCCGGAAGCACATTCACTTCACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTC                                                                                <  SRR4302536.3848799/94‑1 (MQ=60)
                CCCGGAAGCACATTCACTTCACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCG                                                                               <  SRR4302536.37755/94‑1 (MQ=60)
                CCCGGAAGCACATTCACTTCACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCG                                                                               <  SRR4302536.1538056/94‑1 (MQ=60)
                CCCGGAAGCACATTCACTTCACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCG                                                                               <  SRR4302536.1361930/94‑1 (MQ=60)
                  CGGAAGCACATTCACTTCACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCC                                                                             <  SRR4302536.4085364/94‑1 (MQ=60)
                   GGAAGCACATTCACTTCACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCT                                                                            >  SRR4302536.5130432/1‑94 (MQ=60)
                   GGAAGCACATTCACTTCACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCT                                                                            >  SRR4302536.4612679/1‑94 (MQ=60)
                   GGAAGCACATTCACTTCACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCT                                                                            >  SRR4302536.4443708/1‑94 (MQ=60)
                    GAAGCACATTCACTTCACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTG                                                                           >  SRR4302536.5429564/1‑94 (MQ=60)
                    GAAGCACATTCACTTCACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTG                                                                           <  SRR4302536.5611952/94‑1 (MQ=60)
                     AAGCACATTCACTTCACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGC                                                                          >  SRR4302536.5613081/1‑94 (MQ=60)
                     AAGCACATTCACTTCACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCCGC                                                                          >  SRR4302536.6858593/1‑94 (MQ=60)
                       GCACATTCACTTCACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGT                                                                        <  SRR4302536.2040255/94‑1 (MQ=60)
                        CACATTCACATCACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTG                                                                       >  SRR4302536.6751436/1‑94 (MQ=60)
                         ACATTCACTTCACAATTTGTTTACATCAATTTTAACACATCATCCACAATCTGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGG                                                                      >  SRR4302536.3925551/1‑94 (MQ=60)
                         ACATTCACTTCACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGG                                                                      >  SRR4302536.3699241/1‑94 (MQ=60)
                         ACATTCACTTCACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGG                                                                      <  SRR4302536.4284104/94‑1 (MQ=60)
                         ACATTCACTTCACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGG                                                                      >  SRR4302536.2092188/1‑94 (MQ=60)
                         ACATTCACTTCACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGG                                                                      >  SRR4302536.1946857/1‑94 (MQ=60)
                          CATTCACTTCACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGC                                                                     >  SRR4302536.3378006/1‑94 (MQ=60)
                          CATTCACTTCACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGC                                                                     >  SRR4302536.3219039/1‑94 (MQ=60)
                          CATTCACTTCACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGC                                                                     <  SRR4302536.3535343/94‑1 (MQ=60)
                          CATTCACTTCACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGC                                                                     <  SRR4302536.5084161/94‑1 (MQ=60)
                            TTCACTTCACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCT                                                                   <  SRR4302536.3040246/94‑1 (MQ=60)
                             TCACTTCACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTC                                                                  >  SRR4302536.2012500/1‑94 (MQ=60)
                              CACTTCACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCT                                                                 >  SRR4302536.5938142/1‑94 (MQ=60)
                              CACTTCACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCT                                                                 >  SRR4302536.4447521/1‑94 (MQ=60)
                                CTTCACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTAT                                                               <  SRR4302536.1102892/94‑1 (MQ=60)
                                CTTCACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTAT                                                               <  SRR4302536.4859218/94‑1 (MQ=60)
                                 TTCACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATG                                                              <  SRR4302536.676322/94‑1 (MQ=60)
                                 TTCACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATG                                                              <  SRR4302536.3413053/94‑1 (MQ=60)
                                  TCACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGG                                                             <  SRR4302536.5075664/94‑1 (MQ=60)
                                   CACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGC                                                            >  SRR4302536.6190359/1‑94 (MQ=60)
                                   CACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGC                                                            >  SRR4302536.414684/1‑94 (MQ=60)
                                    ACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCT                                                           >  SRR4302536.1400011/1‑94 (MQ=60)
                                    ACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCT                                                           <  SRR4302536.4488215/94‑1 (MQ=60)
                                    ACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCT                                                           <  SRR4302536.1241405/94‑1 (MQ=60)
                                     CAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTC                                                          <  SRR4302536.2680902/94‑1 (MQ=60)
                                       ATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGTCTGCGTGGCCTCTATGGCTCTG                                                        >  SRR4302536.2455692/1‑94 (MQ=60)
                                       ATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTG                                                        <  SRR4302536.6658216/94‑1 (MQ=60)
                                       ATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTG                                                        <  SRR4302536.4099003/94‑1 (MQ=60)
                                       ATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTG                                                        <  SRR4302536.1884168/94‑1 (MQ=60)
                                          TGTTTACATGAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATT                                                     >  SRR4302536.6766075/1‑94 (MQ=60)
                                          TGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATT                                                     <  SRR4302536.1010083/94‑1 (MQ=60)
                                           GTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTT                                                    <  SRR4302536.2278009/94‑1 (MQ=60)
                                           GTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTT                                                    <  SRR4302536.4027237/94‑1 (MQ=60)
                                            TTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTA                                                   >  SRR4302536.4274035/1‑94 (MQ=60)
                                             TTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAA                                                  >  SRR4302536.196262/1‑94 (MQ=60)
                                               ACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGTCCTCTATGGCTCTGATTTAAGT                                                <  SRR4302536.5361016/94‑1 (MQ=60)
                                               ACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGTCTCTATGGCTCTGATTTAAGT                                                <  SRR4302536.5604225/94‑1 (MQ=60)
                                                CATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTA                                               >  SRR4302536.432951/1‑94 (MQ=60)
                                                CATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTA                                               >  SRR4302536.5130042/1‑94 (MQ=60)
                                                  TCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAAT                                             <  SRR4302536.2904327/94‑1 (MQ=60)
                                                    AATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGTCCTCTTTGGCTCTGATTTAAGTAATAT                                           <  SRR4302536.6647201/94‑1 (MQ=60)
                                                    AATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATAT                                           >  SRR4302536.1017336/1‑94 (MQ=60)
                                                    AATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATAT                                           <  SRR4302536.2783083/94‑1 (MQ=60)
                                                     ATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATC                                          >  SRR4302536.2924713/1‑94 (MQ=60)
                                                      TTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCT                                         <  SRR4302536.6618483/94‑1 (MQ=60)
                                                       TTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCTG                                        >  SRR4302536.4223443/1‑94 (MQ=60)
                                                       TTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCTG                                        <  SRR4302536.1704458/94‑1 (MQ=60)
                                                       TTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCTG                                        <  SRR4302536.1043122/94‑1 (MQ=60)
                                                         TAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCTGCG                                      <  SRR4302536.1389499/94‑1 (MQ=60)
                                                         TAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCTGCG                                      >  SRR4302536.1997203/1‑94 (MQ=60)
                                                         TAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCTGCG                                      <  SRR4302536.5262003/94‑1 (MQ=60)
                                                         TAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTCAAGTAATATCTGCG                                      <  SRR4302536.6797022/94‑1 (MQ=60)
                                                          AACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCTGCGG                                     >  SRR4302536.2755032/1‑94 (MQ=60)
                                                          AACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCTGCGG                                     >  SRR4302536.5238553/1‑94 (MQ=60)
                                                           ACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCTGCGGG                                    <  SRR4302536.653863/94‑1 (MQ=60)
                                                           ACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCTGCGGG                                    <  SRR4302536.6368941/94‑1 (MQ=60)
                                                            CACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCTGCGGGC                                   >  SRR4302536.6042154/1‑94 (MQ=60)
                                                            CACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCTGCGGGA                                   >  SRR4302536.2193835/1‑94 (MQ=60)
                                                             ACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCTGCGGGCG                                  <  SRR4302536.1488320/94‑1 (MQ=60)
                                                             ACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCTGCGGGCG                                  <  SRR4302536.3103584/94‑1 (MQ=60)
                                                             ACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCTGCGGGCG                                  >  SRR4302536.4177843/1‑94 (MQ=60)
                                                              CATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATGTAAGTAATATCTGCGGGCGG                                 >  SRR4302536.1372571/1‑94 (MQ=60)
                                                               ATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCTGCGGGCGTG                                <  SRR4302536.86978/94‑1 (MQ=60)
                                                                 CATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCTGCGGGCGTGGT                              >  SRR4302536.3770613/1‑94 (MQ=60)
                                                                 CATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCTGCGGGCGTGGT                              <  SRR4302536.5039976/94‑1 (MQ=60)
                                                                  ATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTTCGTGGCCTCTATGGCTCTGATTTAAGTAATATCTGCGGGCGTGGTC                             >  SRR4302536.5567033/1‑94 (MQ=60)
                                                                  ATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCTGCGGGCGTGGTC                             <  SRR4302536.2170652/94‑1 (MQ=60)
                                                                  ATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCTGCGGGCGTGGTC                             <  SRR4302536.6901852/94‑1 (MQ=60)
                                                                   TCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCTGCGGGCGTGGTCA                            >  SRR4302536.5205928/1‑94 (MQ=60)
                                                                   TCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCTGCGGGCGTGGTCA                            <  SRR4302536.2352525/94‑1 (MQ=60)
                                                                    CAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCTGCGGGCGTGGTCAC                           >  SRR4302536.3309583/1‑94 (MQ=60)
                                                                      ACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCTGCGGGCGTGGTCACGT                         >  SRR4302536.2467683/1‑94 (MQ=60)
                                                                        AATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCTGCGGGCGTGGTCACGTTT                       >  SRR4302536.2982308/1‑94 (MQ=60)
                                                                        AATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCTGCGGGCGTGGTCACGTTT                       <  SRR4302536.2893634/94‑1 (MQ=60)
                                                                         ATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCTGCGGGCGTGGTCACGTTTG                      <  SRR4302536.2771969/94‑1 (MQ=60)
                                                                         ATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCTGCGGGCGTGGTCACGTTTG                      >  SRR4302536.351554/1‑94 (MQ=60)
                                                                         ATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCTGCGGGCGTGGTCACGGTTG                      >  SRR4302536.3512839/1‑94 (MQ=60)
                                                                           CCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCTGCGGGCGTGGTCACGTTTGCG                    <  SRR4302536.2957810/94‑1 (MQ=60)
                                                                            CGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCTGCGGGCGTGGTCACGTTTGCGG                   >  SRR4302536.592808/1‑94 (MQ=60)
                                                                            CGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCTGCGGGCGTGGTCACGTTTGCGG                   >  SRR4302536.302457/1‑94 (MQ=60)
                                                                             GTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCTGCGGGCGTGGTCACGTTTGCGGG                  >  SRR4302536.3819872/1‑94 (MQ=60)
                                                                             GTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCTGCGGGCGTGGTCACGTTTGCGGG                  >  SRR4302536.3455135/1‑94 (MQ=60)
                                                                              TCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCTGCGGGCGTGGTCACGTTTGCGGGG                 <  SRR4302536.1264134/94‑1 (MQ=60)
                                                                               CTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCTGCGGGCGTGGTCACGTTTGCGGGGC                <  SRR4302536.6116460/94‑1 (MQ=60)
                                                                               CTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCTGCGGGCGTGGTCACGTTTGCGGGGC                >  SRR4302536.6084936/1‑94 (MQ=60)
                                                                                TTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCTGCGGGCGTGGTCACGTTTGCGGGGCT               <  SRR4302536.3161332/94‑1 (MQ=60)
                                                                                TTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCTGCGGGCGTGGTCACGTTTGCGGGGCT               >  SRR4302536.1381831/1‑94 (MQ=60)
                                                                                TTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCTGCGGGCGTGGTCACGTTTGCGGGCCT               <  SRR4302536.6814084/94‑1 (MQ=60)
                                                                                 TTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCTGCGGGCGTGGTCACGTTTGCGGGGCTA              <  SRR4302536.4216546/94‑1 (MQ=60)
                                                                                  TATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCTGCGGGCGTGGTCACGTTTGCGGGGCTAT             <  SRR4302536.6620249/94‑1 (MQ=60)
                                                                                  TATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCTGCGGGCGTGGTCACGTTTGCGGGGCTAT             >  SRR4302536.5883354/1‑94 (MQ=60)
                                                                                   ATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCTGCGGGCGTGGTCACGTTTGCGGGGCTATA            >  SRR4302536.4757101/1‑94 (MQ=60)
                                                                                   ATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCTGCGGGCGTGGTCACGTTTGCGGGGCTATA            >  SRR4302536.6671969/1‑94 (MQ=60)
                                                                                    TACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCTGCGGGCGTGGTCACGTTTGCGGGGCTATAT           <  SRR4302536.4503244/94‑1 (MQ=60)
                                                                                       AGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCTGCGGGCGTGGTCACGTTTGCGGGGCTATATGTA        >  SRR4302536.2802115/1‑94 (MQ=60)
                                                                                       AGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCTGCGGGCGTGGTCACGTTTGCGGGGCTATATGTA        >  SRR4302536.5327205/1‑94 (MQ=60)
                                                                                       AGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCTGCGGGCGTGGTCACGTTTGCGGGGCTATATGTA        >  SRR4302536.1111731/1‑94 (MQ=60)
                                                                                        GATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCTGCGGGCGTGGTCACGTTTGCGGGGCTATATGTAC       >  SRR4302536.5049295/1‑94 (MQ=60)
                                                                                          TCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCTGCGGGCGTGGTCACGTTTGCGGGGCTATATGTACCC     <  SRR4302536.1143536/94‑1 (MQ=60)
                                                                                          TCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCTGCGGGCGTGGTCACGTTTGCGGGGCTATATGTACCC     <  SRR4302536.1735781/94‑1 (MQ=60)
                                                                                           CGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCTGCGGGCGTGGTCACGTTTGCGGGGCTATATGTACCCG    <  SRR4302536.5455292/94‑1 (MQ=60)
                                                                                           CGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCTGCGGGCGTGGTCACGTTTGCGGGGCTATATGTACCCG    <  SRR4302536.1203146/94‑1 (MQ=60)
                                                                                            GCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCTGCGGGCGTGGTCACGTTTGCGGGGCTATATGTACCCGT   <  SRR4302536.2279630/94‑1 (MQ=60)
                                                                                             CAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCTGCGGGCGTGGTCACGTTTGCGGGGCTATATGTACCCGTT  >  SRR4302536.4277346/1‑94 (MQ=60)
                                                                                             |                                                                                             
GAAGTCACTTATTTTCCCCGGAAGCACATTCACTTCACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGTAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCTGCGGGCGTGGTCACGTTTGCGGGGCTATATGTACCCGTT  >  NC_000913/2276250‑2276436

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑