Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1475	266.7	13469680	98.2%	13227225	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,284,989	(C)_5→4	coding (1932/2511 nt)	yejO ←	putative ATP‑binding component of a transport system

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,284,985	0	C	.	100.0%	1048.3 / NA	227	coding (1936/2511 nt)	yejO	putative ATP‑binding component of a transport system
Reads supporting (aligned to +/- strand): ref base C (0/0); new base . (111/116); total (111/116)

Only 100 of 264 total aligned reads displayed.

ACTCATCTTGCCATGGATGGTGTTGGCAAAACGGTCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAGCCCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAATATCAGAATGAGAGTAACCAAAGATCAAGCCGCGAATT  >  NC_000913/2284893‑2285073

aCTCATCTTGCCATGGATGGTGTTGGCAAAACGGTCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAGc                                                                                          <  2:6218872/93‑1 (MQ=255)

 cTCATCTTGCCATGGATGGTGTTGGCAAAACGGTCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAGcc                                                                                         <  1:2078168/93‑1 (MQ=255)

     tCTTGCCATGGATGGTGTTGGCAAAACGGTCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAGccccag                                                                                     <  1:4158412/93‑3 (MQ=255)

     tCTTGCCATGGATGGTGTTGGCAAAACGGTCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAGccccag                                                                                     >  2:2201728/1‑91 (MQ=255)

     tCTTGCCATGGATGGTGTTGGCAAAACGGTCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAGccccag                                                                                     <  2:3157354/93‑3 (MQ=255)

      cTTGCCATGGATGGTGTTGGCAAAACGGTCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAGccccagg                                                                                    <  1:6058649/93‑4 (MQ=255)

       ttGCCATGGATGGTGTTGGCAAAACGGTCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAGccccaggg                                                                                   <  1:6212728/93‑5 (MQ=255)

       ttGCCATGGATGGTGTTGGCAAAACGGTCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAGccccaggg                                                                                   >  1:3673298/1‑89 (MQ=255)

       ttGCCATGGATGGTGTTGGCAAAACGGTCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAGccccaggg                                                                                   >  1:2835302/1‑89 (MQ=255)

       ttGCCATGGATGGTGTTGGCAAAACGGTCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAGccccaggg                                                                                   <  1:5803030/93‑5 (MQ=255)

       ttGCCATGGATGGTGTTGGCAAAACGGTCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAGccccaggg                                                                                   <  2:4373592/93‑5 (MQ=255)

        tGCCATGGATGGTGTTGGCAAAACGGTCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGt                                                                                 >  2:6708426/1‑93 (MQ=255)

        tGCCATGGATGGTGTTGGCAAAACGGTCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGt                                                                                 <  1:1390348/93‑1 (MQ=255)

         gCCATGGATGGTGTTGGCAAAACGGTCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGta                                                                                >  1:5756593/1‑93 (MQ=255)

         gCCATGGATGGTGTTGGCAAAACGGTCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGta                                                                                >  2:2151388/1‑93 (MQ=255)

         gCCATGGATGGTGTTGGCAAAACGGTCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGta                                                                                >  2:5546521/1‑93 (MQ=255)

          ccATGGATGGTGTTGGCAAAACGGTCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGtat                                                                               <  2:3362144/93‑1 (MQ=255)

           cATGGATGGTGTTGGCAAAACGGTCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCGACCGGCATAAG‑CCCCAGGGtata                                                                              >  2:3436782/1‑93 (MQ=255)

           cATGGATGGTGTTGGCAAAACGGTCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGtata                                                                              >  1:2137497/1‑93 (MQ=255)

             tggatggTGTTGGCAAAACGGTCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGc                                                                            >  2:6326616/1‑93 (MQ=255)

             tggatggTGTTGGCAAAACGGTCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGc                                                                            >  1:6377293/1‑93 (MQ=255)

               gatggTGTTGGCAAAACGGTCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTa                                                                          <  1:4682464/93‑1 (MQ=255)

                atggTGTTGGCAAAACGGTCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTAt                                                                         <  2:2988213/93‑1 (MQ=255)

                 tggTGTTGGCAAAACGGTCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATc                                                                        >  1:3594648/1‑93 (MQ=255)

                 tggTGTTGGCAAAACGGTCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATc                                                                        <  2:5652458/93‑1 (MQ=255)

                 tggTGTTGGCAAAACGGTCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATc                                                                        >  2:4535866/1‑93 (MQ=255)

                 tggTGTGGGCAAAACGGTCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATc                                                                        <  1:1834566/93‑1 (MQ=255)

                  ggTGTTGGCAAAACGGTCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCg                                                                       <  1:3707686/93‑1 (MQ=255)

                   gtgtTGGCAAAACGGTCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGa                                                                      >  1:4797762/1‑93 (MQ=255)

                   gtgtTGGCAAAACGGTCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGa                                                                      <  1:6716423/93‑1 (MQ=255)

                   gtgtTGGCAAAACGGTCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGCGTATAGCTATCGa                                                                      >  1:970816/1‑93 (MQ=255)

                    tgtTGGCAAAACGGTCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGat                                                                     <  1:4259921/93‑1 (MQ=255)

                    tgtTGGCAAAACGGTCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGat                                                                     >  1:1582452/1‑93 (MQ=255)

                    tgtTGGCAAAACGGTCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGat                                                                     <  2:5386191/93‑1 (MQ=255)

                     gtTGGCAAAACGGTCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGata                                                                    <  2:5054623/93‑1 (MQ=255)

                       tGGCAAAACGGTCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATAtt                                                                  >  1:5325150/1‑93 (MQ=255)

                        ggCAAAACGGTCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CACCAGGGTATAGCTATCGATATTa                                                                 <  2:3071470/93‑1 (MQ=255)

                            aaaCGGTCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCtt                                                             >  2:153534/1‑93 (MQ=255)

                             aaCGGTCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCttt                                                            <  1:4854831/93‑1 (MQ=255)

                             aaCGGTCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCttt                                                            <  1:2707776/93‑1 (MQ=255)

                             aaCGGTCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCttt                                                            >  1:224823/1‑93 (MQ=255)

                               cGGTCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTgc                                                          <  2:2333118/93‑1 (MQ=255)

                                ggTCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTgcc                                                         >  1:1060295/1‑93 (MQ=255)

                                ggTCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTgcc                                                         >  1:3515460/1‑93 (MQ=255)

                                 gTCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTgccg                                                        >  1:3894922/1‑93 (MQ=255)

                                 gTCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTgccg                                                        >  1:5401825/1‑93 (MQ=255)

                                  tCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACGTTTgccgc                                                       >  1:3458933/1‑93 (MQ=255)

                                   taaCTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTgccgcc                                                      <  2:4762745/92‑1 (MQ=255)

                                    aaCTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGccgccg                                                     <  2:5212724/93‑1 (MQ=255)

                                    aaCTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGccgccg                                                     >  1:6491180/1‑93 (MQ=255)

                                     aCTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCcgccgc                                                    >  2:5737703/1‑93 (MQ=255)

                                       tttCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGa                                                  <  1:3744579/93‑1 (MQ=255)

                                           accaccCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCaa                                              <  1:31848/93‑1 (MQ=255)

                                            ccaccCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCaaa                                             >  1:5055475/1‑93 (MQ=255)

                                            ccaccCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCaaa                                             >  2:4117327/1‑93 (MQ=255)

                                             caccCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCaaaa                                            <  1:1897512/93‑1 (MQ=255)

                                              cccccATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAAc                                           <  1:430450/92‑1 (MQ=255)

                                               ccccATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAAcc                                          <  2:1316257/93‑1 (MQ=255)

                                               ccccATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAAcc                                          <  1:101202/93‑1 (MQ=255)

                                                  cATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCaaa                                       >  1:5562614/1‑92 (MQ=255)

                                                  cATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAat                                       >  1:1282757/1‑93 (MQ=255)

                                                   aTCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCTGCCGCGATCAAAACCAata                                      <  1:5551618/93‑1 (MQ=255)

                                                    tCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAatat                                     <  2:6059562/93‑1 (MQ=255)

                                                    tCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAatat                                     >  2:6675127/1‑93 (MQ=255)

                                                    tCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAatat                                     >  2:432821/1‑93 (MQ=255)

                                                    tCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAatat                                     <  1:6203870/93‑1 (MQ=255)

                                                     cAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAATATc                                    >  2:3699635/1‑93 (MQ=255)

                                                       aCATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAATATCAg                                  >  2:2723213/1‑93 (MQ=255)

                                                        cATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAATATCAGa                                 <  1:2568805/93‑1 (MQ=255)

                                                         aTAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAATATCAGaa                                <  2:5123572/93‑1 (MQ=255)

                                                          tAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAATATCAGAAt                               >  1:2899372/1‑93 (MQ=255)

                                                          tAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAATATCAGAAt                               >  2:3914087/1‑93 (MQ=255)

                                                          tAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAATATCAGAAt                               >  2:4947300/1‑93 (MQ=255)

                                                            ggCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAATATCAGAATga                             <  1:1811449/93‑1 (MQ=255)

                                                             gCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAATATCAGAATgag                            <  2:3949501/93‑1 (MQ=255)

                                                             gCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAATATCAGAATgag                            >  1:3361345/1‑93 (MQ=255)

                                                              cACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAATATCAGAATgaga                           <  2:3294596/93‑1 (MQ=255)

                                                              cACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAATATCAGAATgaga                           >  1:4062774/1‑93 (MQ=255)

                                                               aCCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAATATCAGAATGagag                          <  2:5379993/93‑1 (MQ=255)

                                                               aCCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAATATCAGAATGagag                          >  2:838764/1‑93 (MQ=255)

                                                               aCCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAATATCAGAATGagag                          >  2:1889083/1‑93 (MQ=255)

                                                               aCCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAATATCAGAATGagag                          <  1:6612863/93‑1 (MQ=255)

                                                                ccGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAATATCAGATTGAGAGt                         <  1:2759044/93‑1 (MQ=255)

                                                                ccGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAATATCAGAATGAGAGt                         <  2:3678537/93‑1 (MQ=255)

                                                                  gTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAATATCAGAATGAGAGTaa                       <  2:4453949/93‑1 (MQ=255)

                                                                  gTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGAATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAATATCAGAATGAGAGTaa                       >  2:4862141/1‑93 (MQ=255)

                                                                      tGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAATATCAGAATGAGAGTAACCaa                   >  2:1082823/1‑93 (MQ=255)

                                                                       gATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAATATCAGAATGAGAGTAACCaaa                  >  2:458352/1‑93 (MQ=255)

                                                                          gCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTCCCTTTGCCGCCGCGATCAAAACCAATATCAGAATGAGAGTAACCAAAGAt               <  2:2442111/93‑1 (MQ=255)

                                                                           cTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAATATCAGAATGAGTGTAACCAAAGATc              <  1:6437905/93‑1 (MQ=255)

                                                                             cccAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAATATCAGAATGAGAGTAACCAAAGATCaa            <  1:2452803/93‑1 (MQ=255)

                                                                             cacAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAATATCAGAATGAGAGTAACCAAAGATCaa            <  2:5933791/91‑1 (MQ=255)

                                                                                aaCCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAATATCAGAATGAGAGTAACCAAAGATCAAGcc         >  1:777382/1‑93 (MQ=255)

                                                                                aaCCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAATATCAGAATGAGAGTAACCAAAGATCAAGcc         >  2:2086748/1‑93 (MQ=255)

                                                                                   cGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTCGCCGCCGCGATCAAAACCAATATCAGAATGAGAGTAACCAAAGATCAAGCcgcg      <  2:1503356/93‑1 (MQ=255)

                                                                                     gCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAATATCAGAATGAGAGTAACCAAAGATCAAGCCGCGaa    <  2:5853817/93‑1 (MQ=255)

                                                                                     gCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAATATCAGAATGAGAGTAACCAAAGATCAAGCCGCGaa    >  2:1773201/1‑93 (MQ=255)

                                                                                      cATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAATATCAGAATGAGAGTAACCAAAGATCAAGCCGCGAAt   <  2:1706137/93‑1 (MQ=255)

                                                                                      cATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAATATCAGAATGAGAGTAACCAAAGATCAAGCCGCGAAt   <  2:3800747/93‑1 (MQ=255)

                                                                                       aTAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAATATCAGAATGAGAGTAACCAAAGATCAAGCCGCGAAtt  <  2:6520444/93‑1 (MQ=255)

ACTCATCTTGCCATGGATGGTGTTGGCAAAACGGTCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAGCCCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAATATCAGAATGAGAGTAACCAAAGATCAAGCCGCGAATT  >  NC_000913/2284893‑2285073

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 28 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CATCTTGCCATGGATGGTGTTGGCAAAACGGTCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAGCCCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAATATCAGAATGAGAGTAACCAAAGATCAAGCCGCGAATTGTACTGCTT  >  NC_000913/2284896‑2285082

CATCTTGCCATGGATGGTGTTGGCAAAACGGTCAGCTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAGCCCCA                                                                                               <  SRR4302536.4990764/94‑1 (MQ=60)

  TCTTGCCATGGATGGTGTTGGCAAAACGGTCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGG                                                                                            <  SRR4302536.4281853/94‑1 (MQ=60)

  TCTTGCCATGGATGGTGTTGGCAAAACGGTCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGG                                                                                            <  SRR4302536.4075314/94‑1 (MQ=60)

  TCTTGCCATGGATGGTGTTGGCAAAACGCTCAACTTGCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGG                                                                                            <  SRR4302536.5885094/94‑1 (MQ=60)

   CTTGCCATGGCTGGTGTTGGCAAAACGGTCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGG                                                                                           >  SRR4302536.4484670/1‑94 (MQ=60)

   CTTGCCATGGATGGTGTTGGCAAAACGGTCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGG                                                                                           >  SRR4302536.2919215/1‑94 (MQ=60)

   CTTGCCATGGATGGTGTTGGCAAAACGGTCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGG                                                                                           <  SRR4302536.6239390/94‑1 (MQ=60)

   CTTGCCATGGATGGTGTTGGCAAAACGGTCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGG                                                                                           <  SRR4302536.6255845/94‑1 (MQ=60)

   CTTGCCATGGATGGTGTTGGCAAAACGGTCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGG                                                                                           <  SRR4302536.6574714/94‑1 (MQ=60)

   CTTGCCATGGATGGTGTTGGCAAAACGGTCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGG                                                                                           >  SRR4302536.3783121/1‑94 (MQ=60)

    TTGCCATGGATGGTGTTGGCAAAACGGTCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGT                                                                                          <  SRR4302536.5975830/94‑1 (MQ=60)

    TTGCCATGGATGGTGTTGGCAAAACGGTCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGT                                                                                          <  SRR4302536.6397821/94‑1 (MQ=60)

     TGCCATGGATGGTGTTGGCAAAACGGTCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTA                                                                                         <  SRR4302536.1431746/94‑1 (MQ=60)

     TGCCATGGATGGTGTTGGCAAAACGGTCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTA                                                                                         >  SRR4302536.5927844/1‑94 (MQ=60)

      GCCATGGATGGTGTTGGCAAAACGGTCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTAT                                                                                        >  SRR4302536.5035826/1‑94 (MQ=60)

      GCCATGGATGGTGTTGGCAAAACGGTCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTAT                                                                                        <  SRR4302536.2576613/94‑1 (MQ=60)

      GCCATGGATGGTGTTGGCAAAACGGTCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTAT                                                                                        <  SRR4302536.1200414/94‑1 (MQ=60)

       CCATGGATGGTGTTGGCAAAACGGTCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATA                                                                                       >  SRR4302536.2201636/1‑94 (MQ=60)

       CCATGGATGGTGTTGGCAAAACGGTCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGAATA                                                                                       >  SRR4302536.2159272/1‑94 (MQ=60)

        CATGGATGGTGTTGGCAAAACGGTCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAG                                                                                      >  SRR4302536.6872792/1‑94 (MQ=60)

        CATGGATGGTGTTGGCAAAACGGTCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAG                                                                                      <  SRR4302536.2210302/94‑1 (MQ=60)

        CATGGATGGTGTTGGCAAAACGGTCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAG                                                                                      <  SRR4302536.3835458/94‑1 (MQ=60)

         ATGGATGGTGTTGGCAAAACGGTCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGC                                                                                     >  SRR4302536.6567369/1‑94 (MQ=60)

          TGGATGGTGTTGGCAAAACGGTCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCT                                                                                    <  SRR4302536.3605471/94‑1 (MQ=60)

           GGATGGTGTTGGCAAAACGGTCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTA                                                                                   <  SRR4302536.4242688/94‑1 (MQ=60)

            GATGGTGTTGGCAAAACGGTCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTAT                                                                                  <  SRR4302536.6200387/94‑1 (MQ=60)

            GATGGTGTTGGCAAAACGGTCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTAT                                                                                  <  SRR4302536.4823281/94‑1 (MQ=60)

             ATGGTGTTGGCAAAACGGTCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATC                                                                                 >  SRR4302536.3702147/1‑94 (MQ=60)

              TGGTGTTGGCAAACCTGTCATCTTTCACCACCCCATCAACATAGGCCCCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCG                                                                                <  SRR4302536.6910909/94‑1 (MQ=60)

              TGGTGTGGGCAAAACGGTCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCG                                                                                <  SRR4302536.1889866/94‑1 (MQ=60)

               GGTGTTGGCAAAACGGTCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGA                                                                               >  SRR4302536.4942166/1‑94 (MQ=60)

               GGTGTTGGCAAAACGGTCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGA                                                                               <  SRR4302536.5765829/94‑1 (MQ=60)

               GGTGTTGGCAAAACGGTCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGA                                                                               <  SRR4302536.3818529/94‑1 (MQ=60)

               GGTGTTGGCAAAACGGTCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGCGTATAGCTATCGA                                                                               >  SRR4302536.999465/1‑94 (MQ=60)

                GTGTTGGCAAAACGGTCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGAT                                                                              <  SRR4302536.6915795/94‑1 (MQ=60)

                GTGTTGGCAAAACGGTCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGAT                                                                              <  SRR4302536.6506309/94‑1 (MQ=60)

                GTGTTGGCAAAACGGTCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGAT                                                                              <  SRR4302536.1935256/94‑1 (MQ=60)

                GTGTTGGCAAAACGGTCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGAT                                                                              >  SRR4302536.1628779/1‑94 (MQ=60)

                GTGTTGGCAAAACGGTCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGAT                                                                              >  SRR4302536.2795658/1‑94 (MQ=60)

                 TGTTGGCAAAACGGTCAACTTTCCCCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATA                                                                             <  SRR4302536.3768409/94‑1 (MQ=60)

                 TGTTGGCAAAACGGTCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATA                                                                             <  SRR4302536.4386863/94‑1 (MQ=60)

                   TTGGCAAAACGGTCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATT                                                                           >  SRR4302536.5484250/1‑94 (MQ=60)

                    TGGCAAAACGGTCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTA                                                                          <  SRR4302536.1025311/94‑1 (MQ=60)

                    TGGCAAAACGGTCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTA                                                                          <  SRR4302536.2439484/94‑1 (MQ=60)

                       CAAAACGGTAAACTTTCAACACCCCATCAACATAGGCACCGTTATGATGCTCCCAAGCGGCATAAG‑ACCCAGAGTATAGCTATCGATATTAGCT                                                                       >  SRR4302536.2981648/1‑94 (MQ=60)

                        AAAACGGTCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTT                                                                      >  SRR4302536.3621750/1‑94 (MQ=60)

                        AAAACGGTCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTT                                                                      >  SRR4302536.5607440/1‑94 (MQ=60)

                         AAACGGTCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTT                                                                     >  SRR4302536.3841899/1‑94 (MQ=60)

                         AAACGGTCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTT                                                                     >  SRR4302536.230796/1‑94 (MQ=60)

                          AACGGTCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTG                                                                    <  SRR4302536.2788562/94‑1 (MQ=60)

                          AACGGTCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTG                                                                    <  SRR4302536.5000928/94‑1 (MQ=60)

                            CGGTCACCTTACACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCACCCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCC                                                                  <  SRR4302536.2761169/94‑1 (MQ=60)

                            CGGTCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCC                                                                  >  SRR4302536.2091520/1‑94 (MQ=60)

                            CGGTCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCC                                                                  >  SRR4302536.1092005/1‑94 (MQ=60)

                            CGGTCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCC                                                                  >  SRR4302536.3620436/1‑94 (MQ=60)

                             GGTCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCG                                                                 >  SRR4302536.5563185/1‑94 (MQ=60)

                             GGTCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCG                                                                 >  SRR4302536.4010730/1‑94 (MQ=60)

                              GTCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACGTTTGCCGC                                                                >  SRR4302536.3561983/1‑94 (MQ=60)

                                CAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCG                                                              >  SRR4302536.6684729/1‑94 (MQ=60)

                                 AACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGC                                                             >  SRR4302536.3786809/1‑94 (MQ=60)

                                   CTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGA                                                           <  SRR4302536.80375/94‑1 (MQ=60)

                                   CTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGA                                                           <  SRR4302536.5719940/94‑1 (MQ=60)

                                    TTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGAT                                                          <  SRR4302536.5441747/94‑1 (MQ=60)

                                    TTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGAT                                                          <  SRR4302536.3856520/94‑1 (MQ=60)

                                     TTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATC                                                         <  SRR4302536.1677580/94‑1 (MQ=60)

                                      TCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCTGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCA                                                        <  SRR4302536.6818392/94‑1 (MQ=60)

                                      TCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTccgcccgcattca                                                        >  SRR4302536.4946568/1‑81 (MQ=60)

                                      TCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCA                                                        <  SRR4302536.3239282/94‑1 (MQ=60)

                                      TCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCA                                                        >  SRR4302536.371350/1‑94 (MQ=60)

                                      TCACCACCACATCAACATAGGCACCGTTCTGACCCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTGCCTTTGCCGCCGCGATCA                                                        <  SRR4302536.1945632/94‑1 (MQ=60)

                                       CACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAA                                                       >  SRR4302536.2385033/1‑94 (MQ=60)

                                       CACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAA                                                       <  SRR4302536.1872276/94‑1 (MQ=60)

                                        ACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAA                                                      <  SRR4302536.32732/94‑1 (MQ=60)

                                        ACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAA                                                      >  SRR4302536.5206917/1‑94 (MQ=60)

                                         CCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAA                                                     >  SRR4302536.5132477/1‑94 (MQ=60)

                                          CACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAAC                                                    <  SRR4302536.1954654/94‑1 (MQ=60)

                                          CACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAAC                                                    >  SRR4302536.1575500/1‑94 (MQ=60)

                                           CCCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACC                                                   <  SRR4302536.441780/94‑1 (MQ=60)

                                           ACCCCATCAACATAGGCCCCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACC                                                   <  SRR4302536.2873033/94‑1 (MQ=60)

                                           ACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACC                                                   >  SRR4302536.6395186/1‑94 (MQ=60)

                                            CCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGCTATTACCTTTGCCGCCGCGATCAAAACCA                                                  >  SRR4302536.6795360/1‑94 (MQ=60)

                                            CCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCA                                                  <  SRR4302536.103913/94‑1 (MQ=60)

                                             CCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAA                                                 >  SRR4302536.364492/1‑94 (MQ=60)

                                             CCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAA                                                 >  SRR4302536.4985705/1‑94 (MQ=60)

                                              CCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAAT                                                >  SRR4302536.1057552/1‑94 (MQ=60)

                                              CCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAAT                                                >  SRR4302536.1321159/1‑94 (MQ=60)

                                              CCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAAT                                                <  SRR4302536.6467169/94‑1 (MQ=60)

                                              CCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAAA                                                >  SRR4302536.5728285/1‑94 (MQ=60)

                                              CCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCACGGTATAGCTATCGATATTACCTTTGCCGGCGCGATCAAAACCAAT                                                >  SRR4302536.6578603/1‑94 (MQ=60)

                                                ATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCTGCCGCGATCAAAACCAATAT                                              <  SRR4302536.5716997/94‑1 (MQ=60)

                                                ATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAATAT                                              >  SRR4302536.547841/1‑94 (MQ=60)

                                                 TCAACATAGGCACCGTTGTGATGCTCCCAACCGGCATAAG‑CCGCAGGGTATGTCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAATATC                                             <  SRR4302536.6621427/94‑1 (MQ=60)

                                                 TCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAATATC                                             <  SRR4302536.6388671/94‑1 (MQ=60)

                                                  CATCATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAATATCA                                            <  SRR4302536.432318/94‑1 (MQ=60)

                                                  CAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGGATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAATATCA                                            >  SRR4302536.1378302/1‑94 (MQ=60)

                                                   AACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAATATCAG                                           >  SRR4302536.2950400/1‑94 (MQ=60)

                                                   AACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAATATCAG                                           <  SRR4302536.417972/94‑1 (MQ=60)

                                                   AACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAATATCAG                                           <  SRR4302536.4425212/94‑1 (MQ=60)

                                                    ACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAATATCAGA                                          <  SRR4302536.5959156/94‑1 (MQ=60)

                                                    ACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAATATCAGA                                          >  SRR4302536.6775168/1‑94 (MQ=60)

                                                     CATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAATATCAGAA                                         >  SRR4302536.3858318/1‑94 (MQ=60)

                                                     CATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAATATCAGAA                                         <  SRR4302536.2646065/94‑1 (MQ=60)

                                                      ATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAATATCAGAAT                                        <  SRR4302536.2226986/94‑1 (MQ=60)

                                                      ATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAATATCAGAAT                                        >  SRR4302536.2984923/1‑94 (MQ=60)

                                                       TAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAATATCAGAATG                                       <  SRR4302536.2109941/94‑1 (MQ=60)

                                                        AGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAATATCAGAATGA                                      >  SRR4302536.4818008/1‑94 (MQ=60)

                                                         GGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAATATCAGAATGAG                                     <  SRR4302536.1866105/94‑1 (MQ=60)

                                                         GGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAATATCAGAATGAG                                     >  SRR4302536.3461145/1‑94 (MQ=60)

                                                         GGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAATATCAGAACGAG                                     >  SRR4302536.6639882/1‑94 (MQ=60)

                                                         GGCACCGTTCTGAGCCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAATATCAGAATGAG                                     <  SRR4302536.74057/94‑1 (MQ=60)

                                                          GCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAATATCAGAATGAGA                                    >  SRR4302536.4183186/1‑94 (MQ=60)

                                                          GCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAATATCAGAATGAGA                                    <  SRR4302536.3478283/94‑1 (MQ=60)

                                                          GCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAATATCAGAATGAGA                                    <  SRR4302536.6309026/94‑1 (MQ=60)

                                                          GCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAATATCAGAATGAGA                                    <  SRR4302536.28816/94‑1 (MQ=60)

                                                           CACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAATATCAGAATGAGAG                                   <  SRR4302536.4416676/94‑1 (MQ=60)

                                                            ACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAATATCAGAATGAGAGT                                  <  SRR4302536.6809497/94‑1 (MQ=60)

                                                            ACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAATATCAGAATGAGAGT                                  >  SRR4302536.3867858/1‑94 (MQ=60)

                                                             CCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAATATCAGATTGAGAGTA                                 <  SRR4302536.2841137/94‑1 (MQ=60)

                                                              CGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTACAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAATATCAGAATGAGAGTAA                                >  SRR4302536.5628902/1‑94 (MQ=60)

                                                                   TGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAATATCAGATTGAGAGTAACCAAA                           >  SRR4302536.1793332/1‑94 (MQ=60)

                                                                    GATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAATATCAGAATGAGAGTAACCAAAG                          <  SRR4302536.4925908/94‑1 (MQ=60)

                                                                        CTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAATATCAGAATGAGTGTAACCAAAGATCA                      <  SRR4302536.6630294/94‑1 (MQ=60)

                                                                        CTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAATATCAGAATGAGAGTAACCAAAGATCA                      >  SRR4302536.5524685/1‑94 (MQ=60)

                                                                          CCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAATATCAGAATGAGAGTAACCAAAGATCAAG                    <  SRR4302536.2526887/94‑1 (MQ=60)

                                                                           CCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAATATCAGAATGAGAGTAACCAAAGATCAAGC                   <  SRR4302536.3404707/94‑1 (MQ=60)

                                                                            CAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAATATCAGAATGAGAGTAACCAAAGATCAAGCC                  >  SRR4302536.800158/1‑94 (MQ=60)

                                                                              ACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAATATCAGAATGAGAGTAACCAAAGATCAAGCCGC                <  SRR4302536.2929086/94‑1 (MQ=60)

                                                                                    ATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAATATCAGAATGAGAGTAACCAAAGATCAAGCCGCGAATTG          >  SRR4302536.3624227/1‑94 (MQ=60)

                                                                                    ATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAATATCAGAATGAGAGTAACCAAAGATCAAGCCGCGAATTG          <  SRR4302536.144938/94‑1 (MQ=60)

                                                                                    ATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAATATCAGAATGAGAGTAACCAAAGATCAAGCCGCGAATTG          <  SRR4302536.6183774/94‑1 (MQ=60)

                                                                                    ATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAATATCAGAATGAGAGTAACCAAAGATCAAGCCGCGAATTG          <  SRR4302536.3479582/94‑1 (MQ=60)

                                                                                     TAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAATATCAGAATGAGAGTAACCAAAGATCAAGCCGCGAATTGT         >  SRR4302536.523068/1‑94 (MQ=60)

                                                                                        agCCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAATATCAGAATGAGAGTAACCAAAGATCAAGCCGCGAATTGTAC       >  SRR4302536.4382201/3‑94 (MQ=60)

                                                                                        agCCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAATATCAGAATGAGAGTAACCAAAGATCAAGCCGCGAATTGTAC       >  SRR4302536.4444416/3‑94 (MQ=60)

                                                                                         GCCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAATATCAGAATGAGAGTAACCAAAGATCAAGCCGCGAATTGTACT      <  SRR4302536.6864097/94‑1 (MQ=60)

                                                                                         GCCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAATATCAGAATGAGAGTAACCAAAGATCAAGCCGCGAATTGTACT      <  SRR4302536.2502076/94‑1 (MQ=60)

                                                                                          CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAATATCAGAATGAGAGTAACCAAAGATCAAGCCGCGAATTGTACTG     >  SRR4302536.2300055/1‑94 (MQ=60)

                                                                                           CCGAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAATATCAGAATGAGAGTAACCAAAGATCAAGCCGCGAATTGTACTGC    >  SRR4302536.3571832/1‑94 (MQ=60)

                                                                                           CCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAATATCAGAATGAGAGTAACCAAAGATCAAGCCGCGAATTGTACTGC    <  SRR4302536.3502883/94‑1 (MQ=60)

                                                                                           CCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAATATCAGAATGAGAGTAACCAAAGATCAAGCCGCGAATTGTACTGC    >  SRR4302536.1655593/1‑94 (MQ=60)

                                                                                            CCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAATATCAGAATGAGAGTAACCAAAGATCAAGCCGCGAATTGTACTGCT   >  SRR4302536.4824058/1‑94 (MQ=60)

                                                                                            CCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAATATCAGAATGAGAGTAACCAAAGATCAAGCCGCGAATTGTACTGCT   >  SRR4302536.3172525/1‑94 (MQ=60)

                                                                                            CCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAATATCAGAATGAGAGTAACCAAAGATCAAGCCGCGAATTGTACTGCT   <  SRR4302536.1443520/94‑1 (MQ=60)

                                                                                            CCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAATATCAGAATGAGAGTAACCAAAGATCAAGCCGCGAATTGTACTGCT   <  SRR4302536.3669797/94‑1 (MQ=60)

                                                                                            CCAGGGCATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAATATCAGAATGAGAGTAACCAAAGATCAAGCCGCGAATTGTACTGCT   >  SRR4302536.3978098/1‑94 (MQ=60)

                                                                                             CAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAATATCAGAATGAGAGTAACCAAAGATCAAGCCGCGAATTGTACTGCTT  <  SRR4302536.2711786/94‑1 (MQ=60)

CATCTTGCCATGGATGGTGTTGGCAAAACGGTCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAGCCCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAATATCAGAATGAGAGTAACCAAAGATCAAGCCGCGAATTGTACTGCTT  >  NC_000913/2284896‑2285082

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`