Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 1475 266.7 13469680 98.2% 13227225 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,297,335 A→G G88G (GGT→GGC)  napH ← ferredoxin‑type protein: electron transfer

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,297,3350AG100.0% 690.9 / NA 213G88G (GGT→GGC) napHferredoxin‑type protein: electron transfer
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (100/113);  total (100/113)

Only 100 of 231 total aligned reads displayed.

GCTAAGTCGGTAATCGGGTTCAGCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCACCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGAACGGTGTCGAATAA  >  NC_000913/2297246‑2297424
                                                                                         |                                                                                         
gCTAAGTCGGTAATCGGGTTCAGCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATcaccgcgccg                                                                                        >  1:2729166/1‑93 (MQ=255)
gCTAAGTCGGTAATCGGGTTCAGCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATcaccgcgccg                                                                                        >  1:5740738/1‑93 (MQ=255)
 cTAAGTCGGTAATCGGGTTCAGCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCgg                                                                                       >  2:5119737/1‑93 (MQ=255)
  tAAGTCGGTAATCGGGTTCAGCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGt                                                                                      >  2:6635680/1‑93 (MQ=255)
  tAAGTCGGTAATCGGGTTCAGCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGt                                                                                      <  2:5533417/93‑1 (MQ=255)
   aaGTCGGTAATCGGGTTCAGCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTc                                                                                     >  1:6677442/1‑93 (MQ=255)
   aaGTCGGTAATCGGGTTCAGCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTc                                                                                     >  1:3927775/1‑93 (MQ=255)
     gTCGGTAATCGGGTTCAGCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCaa                                                                                   <  2:5620273/93‑1 (MQ=255)
     gTCGGTAATCGGGTTCAGCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCaa                                                                                   <  2:3947190/93‑1 (MQ=255)
      tCGGTAATCGGGTTCAGCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAAc                                                                                  <  1:1661290/93‑1 (MQ=255)
      tCGGTAATCGGGTTCAGCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAAc                                                                                  >  2:2427454/1‑93 (MQ=255)
         gTAAGCGGGTTCAGCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCTCCGCGCCGGTCAACGcc                                                                               <  2:2611046/93‑1 (MQ=255)
           aaTCGGGTTCAGCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCAc                                                                             <  1:3936008/93‑1 (MQ=255)
           aaTCGGGTTCAGCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCAc                                                                             <  2:6230400/93‑1 (MQ=255)
           aaTCGGCTTCAGCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCAc                                                                             <  2:3157816/93‑1 (MQ=255)
            aTCGGGTTCAGCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCAcc                                                                            >  1:2302693/1‑93 (MQ=255)
            aTCGGGTTCAGCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCAcc                                                                            >  2:3594650/1‑93 (MQ=255)
            aTCGGGTTCAGCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCAcc                                                                            <  2:1799381/93‑1 (MQ=255)
             tCGGGTTCAGCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCg                                                                           >  1:5088044/1‑93 (MQ=255)
             tCGGGTTCAGCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCg                                                                           <  2:497530/93‑1 (MQ=255)
              cGGGTTCAGCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGt                                                                          <  1:2492972/93‑1 (MQ=255)
              cGGGTTCAGCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGt                                                                          >  1:4376927/1‑93 (MQ=255)
                 gTTCAGCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCTGGTCAACGCCACCGTggc                                                                       <  1:6002481/93‑1 (MQ=255)
                     aGCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTggcaggc                                                                   >  2:4411654/1‑93 (MQ=255)
                      gCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTggcaggca                                                                  <  2:1909244/93‑1 (MQ=255)
                      gCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTggcaggca                                                                  >  1:4241690/1‑93 (MQ=255)
                         ggCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGAt                                                               <  2:3139170/93‑1 (MQ=255)
                         ggCAGACCCAGCTGCAAAATAATCCCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGAt                                                               <  1:6137594/93‑1 (MQ=255)
                          gCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATg                                                              <  1:3297343/93‑1 (MQ=255)
                           cAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGa                                                             >  2:1746004/1‑93 (MQ=255)
                            aGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGTCAGATGAc                                                            >  2:4241659/1‑93 (MQ=255)
                            aGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGAc                                                            <  2:3728567/93‑1 (MQ=255)
                             gACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGAcc                                                           >  1:5583116/1‑93 (MQ=255)
                             gACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGAcc                                                           >  2:6450890/1‑93 (MQ=255)
                              aCCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCa                                                          <  1:1911059/93‑1 (MQ=255)
                              aCCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCa                                                          >  1:84969/1‑93 (MQ=255)
                              aCCCAGCTGCAAAATAATCCCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCa                                                          <  1:1192042/93‑1 (MQ=255)
                                 cAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTg                                                       <  2:7073/93‑1 (MQ=255)
                                 cAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTg                                                       >  1:1089778/1‑93 (MQ=255)
                                  aGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTgg                                                      <  2:1425286/93‑1 (MQ=255)
                                   gCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGc                                                     >  2:3366650/1‑93 (MQ=255)
                                     tGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACAGGcga                                                   >  1:2752557/1‑91 (MQ=255)
                                      gCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAg                                                  >  2:1119429/1‑93 (MQ=255)
                                        aaaaTAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGAc                                                <  1:3662173/93‑1 (MQ=255)
                                        aaaaTAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGAc                                                >  1:4939578/1‑93 (MQ=255)
                                          aataatCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACtt                                              >  1:964585/1‑93 (MQ=255)
                                          aataatCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACtt                                              <  2:2175602/93‑1 (MQ=255)
                                            taatCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTg                                            >  1:5891681/1‑93 (MQ=255)
                                            taatCGCTTCCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTg                                            <  2:635132/93‑1 (MQ=255)
                                             aatCTCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGc                                           <  1:3397566/93‑1 (MQ=255)
                                             aatCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGc                                           >  1:857111/1‑93 (MQ=255)
                                             aatCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGc                                           >  2:2922504/1‑93 (MQ=255)
                                                 gCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCg                                       >  2:3262528/1‑93 (MQ=255)
                                                   tttCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGtc                                     >  2:4721687/1‑93 (MQ=255)
                                                    ttCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGtca                                    >  2:150012/1‑93 (MQ=255)
                                                    ttCCCGCCAGGACGTAGAGCACGGTAATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGtca                                    <  1:1246442/93‑1 (MQ=255)
                                                    tgcgcGCCAGGGCGTAGAGCACGGTGATAATCGCCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGtca                                    <  2:5038885/89‑1 (MQ=255)
                                                     tCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGtcat                                   >  2:2509536/1‑93 (MQ=255)
                                                     tCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGtcat                                   <  2:6086/93‑1 (MQ=255)
                                                      cccGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCAGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGtcatc                                  <  2:3924354/93‑1 (MQ=255)
                                                        cGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAg                                <  1:6141943/93‑1 (MQ=255)
                                                          ccAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCg                              <  1:4468512/93‑1 (MQ=255)
                                                           cAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCgg                             >  2:367791/1‑93 (MQ=255)
                                                            aGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGa                            >  1:3011605/1‑93 (MQ=255)
                                                            aGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGa                            >  1:4086772/1‑93 (MQ=255)
                                                             gggCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGAt                           >  1:2107298/1‑93 (MQ=255)
                                                             gggCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGAt                           <  1:3861710/93‑1 (MQ=255)
                                                             gggCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGAt                           >  2:2960911/1‑93 (MQ=255)
                                                              ggCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATc                          <  2:5952740/93‑1 (MQ=255)
                                                               gCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCg                         <  1:5451986/93‑1 (MQ=255)
                                                                cGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCgg                        <  1:390982/93‑1 (MQ=255)
                                                                 gTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCTGCGTCATCAGTGGATCGGt                       <  1:6530004/93‑1 (MQ=255)
                                                                 gTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGt                       <  1:1482175/93‑1 (MQ=255)
                                                                  tAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTc                      <  2:2737010/93‑1 (MQ=255)
                                                                    gagCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAg                    >  2:6405383/1‑93 (MQ=255)
                                                                    gagCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAg                    >  2:1819263/1‑93 (MQ=255)
                                                                      gCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCg                  <  2:2141449/93‑1 (MQ=255)
                                                                       cACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCgg                 <  2:834759/93‑1 (MQ=255)
                                                                       cACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCgg                 >  2:4156314/1‑93 (MQ=255)
                                                                          ggTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGAAc              >  2:5326307/1‑93 (MQ=255)
                                                                            tGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGAACgg            <  1:374064/93‑1 (MQ=255)
                                                                            tGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGAACgg            <  2:5684826/93‑1 (MQ=255)
                                                                             gATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGAACggg           >  1:1052130/1‑92 (MQ=255)
                                                                              aTAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGAACGgtg          <  1:2669329/93‑1 (MQ=255)
                                                                                aaTCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGAACGGTGTc        <  2:1291881/93‑1 (MQ=255)
                                                                                 aTCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGAACGGTGTca       >  1:4752634/1‑92 (MQ=255)
                                                                                 aTCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGAACGGTGTCg       >  1:456932/1‑93 (MQ=255)
                                                                                 aTCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGGCCGCGGAAAGGAGTCg       >  2:4592924/1‑93 (MQ=255)
                                                                                  tCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGGACGGTGTCGa      >  1:2153272/1‑93 (MQ=255)
                                                                                  tCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGAACGGTGTCGa      >  1:1370967/1‑93 (MQ=255)
                                                                                  tCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGAACGGTGTCGa      >  1:4710334/1‑93 (MQ=255)
                                                                                   caccgcgccgGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGAACGGTGTCGaa     <  1:5145042/93‑1 (MQ=255)
                                                                                   caccgcgccgGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGAACGGTGTCGaa     <  2:484158/93‑1 (MQ=255)
                                                                                   caccgcgccgGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGAACGGTGTCGaa     <  1:5787133/93‑1 (MQ=255)
                                                                                    cccgcgccgGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACGTGGCAGCGTCATCAGCGGATCGGTCAGCGGAACGGTGTCGAAt    <  2:4686716/92‑1 (MQ=255)
                                                                                    accgcgccgGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGAACGGTGTCGAAt    <  1:2044397/93‑1 (MQ=255)
                                                                                    accgcgccgGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGAACGGTGTCGAAt    <  2:1065449/93‑1 (MQ=255)
                                                                                     ccgcgccgGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGAACGGTGTCGAATa   <  2:1690956/93‑1 (MQ=255)
                                                                                     ccgcgccgGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGAACGGTGTCGAATa   <  1:1478542/93‑1 (MQ=255)
                                                                                      cgcgccgGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGAACGGTGTCGAATaa  <  2:2045370/93‑1 (MQ=255)
                                                                                         |                                                                                         
GCTAAGTCGGTAATCGGGTTCAGCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCACCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGAACGGTGTCGAATAA  >  NC_000913/2297246‑2297424

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
GTTCGCTAAGTCGGTAATCGGGTTCAGCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCACCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGAACGGTGTCGAATAACAG  >  NC_000913/2297242‑2297427
                                                                                             |                                                                                            
GTTCGCTAAGTCGGTAATCGGGTTCAGCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCG                                                                                              <  SRR4302536.3388365/94‑1 (MQ=60)
   CGCTAAGTCGGTAATCGGGTTCAGCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCG                                                                                           >  SRR4302536.2810532/1‑94 (MQ=60)
   CGCTAAGTCGGTAATCGGGTTCAGCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCG                                                                                           >  SRR4302536.5911519/1‑94 (MQ=60)
      TAAGTCGGTAATCGGGTTCAGCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTC                                                                                        >  SRR4302536.6875832/1‑94 (MQ=60)
      TAAGTCGGTAATCGGGTTCAGCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTC                                                                                        >  SRR4302536.4044486/1‑94 (MQ=60)
         GTCGGTAATCGGGTTCAGCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAAC                                                                                     <  SRR4302536.6404804/94‑1 (MQ=60)
         GTCGGTAATCGGGTTCAGCGGGCAGACCCAGCTGCAAAATAATCCCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAAC                                                                                     <  SRR4302536.1219692/94‑1 (MQ=60)
          TCGGTAATCGGGTTCAGCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACG                                                                                    <  SRR4302536.1709511/94‑1 (MQ=60)
           CGGTAATCGGGTTCAGCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGC                                                                                   >  SRR4302536.1747478/1‑94 (MQ=60)
           CGGTAATCGGGTTCAGCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGC                                                                                   <  SRR4302536.5422120/94‑1 (MQ=60)
           CGGTAATCGGGTTCAGCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGC                                                                                   <  SRR4302536.134702/94‑1 (MQ=60)
            GGTAATCGGGTTCAGCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCC                                                                                  <  SRR4302536.5261818/94‑1 (MQ=60)
            GGTAATCGGGTTCAGCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCC                                                                                  >  SRR4302536.3155853/1‑94 (MQ=60)
             GTAATCGGGTTCAGCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCA                                                                                 >  SRR4302536.2814372/1‑94 (MQ=60)
              TAATCGGGTTCAGCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCAC                                                                                >  SRR4302536.385432/1‑94 (MQ=60)
               AATCGGGTTCAGCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACC                                                                               >  SRR4302536.2372557/1‑94 (MQ=60)
               AATCGGGTTCAGCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACC                                                                               <  SRR4302536.4052944/94‑1 (MQ=60)
                ATCGGGTTCAGCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCG                                                                              >  SRR4302536.5240243/1‑94 (MQ=60)
                 TCGGGTTCAGCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGT                                                                             >  SRR4302536.4507628/1‑94 (MQ=60)
                  CGGGTTCAGCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTG                                                                            <  SRR4302536.2568156/94‑1 (MQ=60)
                  CGGGTTCAGCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTG                                                                            >  SRR4302536.4883987/1‑94 (MQ=60)
                    GGTTCAGCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGC                                                                          <  SRR4302536.969510/94‑1 (MQ=60)
                    GGTTCAGCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGC                                                                          <  SRR4302536.2954090/94‑1 (MQ=60)
                    GGTTCAGCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGC                                                                          <  SRR4302536.2150548/94‑1 (MQ=60)
                     GTTCAGCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCTGGTCAACGCCACCGTGGCA                                                                         <  SRR4302536.6181423/94‑1 (MQ=60)
                         AGCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCA                                                                     >  SRR4302536.4367987/1‑94 (MQ=60)
                            GGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGAT                                                                  >  SRR4302536.3504622/1‑94 (MQ=60)
                            GGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGAT                                                                  <  SRR4302536.693435/94‑1 (MQ=60)
                            CGGCAGACACAGCTGCAAAATAAGCGCTTGCCCGCCAGGGCGTAGAGCACGGTGATAATCGCCGCGCCGGTCAACGCCACCGTGGCAGGCAGAT                                                                  <  SRR4302536.5639000/94‑1 (MQ=60)
                             GGCAGACCCAGCTGCAAAATAATCCCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATG                                                                 <  SRR4302536.6320503/94‑1 (MQ=60)
                              GCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGA                                                                <  SRR4302536.3394492/94‑1 (MQ=60)
                               CAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGAC                                                               >  SRR4302536.1475376/1‑94 (MQ=60)
                                AGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACC                                                              >  SRR4302536.1095752/1‑94 (MQ=60)
                                AGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACC                                                              >  SRR4302536.5749245/1‑94 (MQ=60)
                                AGACCCAGCTGCAAAATAATCGCTTGCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACC                                                              <  SRR4302536.4494677/94‑1 (MQ=60)
                                 GACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCA                                                             >  SRR4302536.87249/1‑94 (MQ=60)
                                  ACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCAC                                                            <  SRR4302536.1968569/94‑1 (MQ=60)
                                  ACCCAGCTGCAAAATAATCCCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCAC                                                            <  SRR4302536.1227884/94‑1 (MQ=60)
                                   CCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACT                                                           <  SRR4302536.4041807/94‑1 (MQ=60)
                                   CCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACT                                                           <  SRR4302536.1522777/94‑1 (MQ=60)
                                    CCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTG                                                          >  SRR4302536.1122452/1‑94 (MQ=60)
                                     CAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGG                                                         >  SRR4302536.1582491/1‑94 (MQ=60)
                                      AGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGC                                                        >  SRR4302536.6212481/1‑94 (MQ=60)
                                      AGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGC                                                        <  SRR4302536.2357483/94‑1 (MQ=60)
                                        CTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACAGGCGA                                                      >  SRR4302536.2834493/1‑94 (MQ=60)
                                          GCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGA                                                    >  SRR4302536.5949164/1‑94 (MQ=60)
                                           CAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGAC                                                   >  SRR4302536.5088019/1‑94 (MQ=60)
                                           CAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGAC                                                   >  SRR4302536.4366284/1‑94 (MQ=60)
                                            AAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACT                                                  <  SRR4302536.3771657/94‑1 (MQ=60)
                                            AAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACT                                                  >  SRR4302536.4099354/1‑94 (MQ=60)
                                             AAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTT                                                 <  SRR4302536.1624689/94‑1 (MQ=60)
                                             AAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTT                                                 >  SRR4302536.993079/1‑94 (MQ=60)
                                              AATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTT                                                <  SRR4302536.2997451/94‑1 (MQ=60)
                                               ATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTG                                               >  SRR4302536.6067126/1‑94 (MQ=60)
                                                TAGTCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGC                                              <  SRR4302536.4597292/94‑1 (MQ=60)
                                                TAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGC                                              >  SRR4302536.882302/1‑94 (MQ=60)
                                                 AATCTCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCA                                             <  SRR4302536.3498629/94‑1 (MQ=60)
                                                  ATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAG                                            >  SRR4302536.2669524/1‑94 (MQ=60)
                                                    CTCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCG                                          <  SRR4302536.467509/94‑1 (MQ=60)
                                                    CGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCG                                          >  SRR4302536.5913628/1‑94 (MQ=60)
                                                     GCTTTCCCGCCAGGGCGTAGAGCACGGCGATAATCACCGCGCCCGTCAACGCCACCGTGGCAGGCAGATGACCACTTGCCAGACTTTGCAGCGT                                         >  SRR4302536.3843251/1‑94 (MQ=60)
                                                      CTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTC                                        >  SRR4302536.4997636/1‑94 (MQ=60)
                                                       TTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCA                                       <  SRR4302536.4052326/94‑1 (MQ=60)
                                                        TTCCCGCCAGGACGTAGAGCACGGTAATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCAT                                      <  SRR4302536.1283857/94‑1 (MQ=60)
                                                          CCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCA                                    <  SRR4302536.2759172/94‑1 (MQ=60)
                                                            CGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGC                                  <  SRR4302536.6324963/94‑1 (MQ=60)
                                                            CGCCAGGGCGTAGAGCACGGTGAGAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGC                                  <  SRR4302536.4702967/94‑1 (MQ=60)
                                                              CCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGG                                >  SRR4302536.3716653/1‑94 (MQ=60)
                                                              CCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGG                                <  SRR4302536.4602750/94‑1 (MQ=60)
                                                              CCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGG                                >  SRR4302536.5835918/1‑94 (MQ=60)
                                                               CAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGA                               >  SRR4302536.4207947/1‑94 (MQ=60)
                                                               CAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGA                               >  SRR4302536.3100123/1‑94 (MQ=60)
                                                                AGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGAT                              >  SRR4302536.2170623/1‑94 (MQ=60)
                                                                AGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTCGCAAGACTTTGCAGCGTCATCAGCGGAT                              >  SRR4302536.876974/1‑94 (MQ=60)
                                                                 GGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAGCGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATC                             <  SRR4302536.6811904/94‑1 (MQ=60)
                                                                 GGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATC                             <  SRR4302536.3976625/94‑1 (MQ=60)
                                                                 GGCCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATC                             <  SRR4302536.39737/94‑1 (MQ=60)
                                                                  GGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCG                            <  SRR4302536.3428947/94‑1 (MQ=60)
                                                                  GGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCG                            <  SRR4302536.2453709/94‑1 (MQ=60)
                                                                   GCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGG                           <  SRR4302536.5615059/94‑1 (MQ=60)
                                                                    CGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGT                          <  SRR4302536.401307/94‑1 (MQ=60)
                                                                     GTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCTGCGTCATCAGTGGATCGGTC                         <  SRR4302536.6724506/94‑1 (MQ=60)
                                                                     GTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTC                         >  SRR4302536.6069812/1‑94 (MQ=60)
                                                                     GTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTC                         <  SRR4302536.1525959/94‑1 (MQ=60)
                                                                      TAGAGCACGGTGATAATCGCCGGGCCGGTCAACCCCACCGTGGCAGGCAGATGAACACTGGCAAGCCTTTGCAGCGTCATCCGCGGATCGGTCA                        <  SRR4302536.4743996/94‑1 (MQ=60)
                                                                      TAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCA                        <  SRR4302536.3987006/94‑1 (MQ=60)
                                                                       AGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAG                       >  SRR4302536.5109127/1‑94 (MQ=60)
                                                                       AGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAG                       <  SRR4302536.1379007/94‑1 (MQ=60)
                                                                        GAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGC                      >  SRR4302536.601688/1‑94 (MQ=60)
                                                                         AGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCG                     <  SRR4302536.1993681/94‑1 (MQ=60)
                                                                         AGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCG                     >  SRR4302536.2464617/1‑94 (MQ=60)
                                                                             CGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGAAC                 >  SRR4302536.4784656/1‑94 (MQ=60)
                                                                             CGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGAAC                 >  SRR4302536.6242244/1‑94 (MQ=60)
                                                                                TGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGAACGGT              <  SRR4302536.383929/94‑1 (MQ=60)
                                                                                TGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGAACGGG              >  SRR4302536.1083546/1‑94 (MQ=60)
                                                                                 GATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGAACGGTG             <  SRR4302536.4070816/94‑1 (MQ=60)
                                                                                 GATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGAACGGTG             <  SRR4302536.4964743/94‑1 (MQ=60)
                                                                                 GATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGAACGGTG             <  SRR4302536.2188559/94‑1 (MQ=60)
                                                                                 GATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGAACGGGG             >  SRR4302536.538544/1‑94 (MQ=60)
                                                                                  ATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGAACGGTGT            <  SRR4302536.2749147/94‑1 (MQ=60)
                                                                                   TAATCACCGCGCCGGTCAACGCCACCGTGGCAAGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGAACGGTGTC           >  SRR4302536.6321908/1‑94 (MQ=60)
                                                                                    AATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGAGCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGAACGGTGTCG          >  SRR4302536.2167525/1‑94 (MQ=60)
                                                                                    AATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGAACGGTGTCG          <  SRR4302536.1251159/94‑1 (MQ=60)
                                                                                    AATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGAACGGTGTCG          >  SRR4302536.468909/1‑94 (MQ=60)
                                                                                    AATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGAACGGTGTCA          >  SRR4302536.4895684/1‑94 (MQ=60)
                                                                                     ATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGGACGGTGTCGA         >  SRR4302536.2217960/1‑94 (MQ=60)
                                                                                     ATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGAACGGTGTCGA         >  SRR4302536.4852016/1‑94 (MQ=60)
                                                                                     ATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGAACGGTGTCGA         >  SRR4302536.1411823/1‑94 (MQ=60)
                                                                                      TCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGAACGGTGTCGAA        >  SRR4302536.6888372/1‑94 (MQ=60)
                                                                                       CACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGAACGGTGTCGAAT       <  SRR4302536.5959408/94‑1 (MQ=60)
                                                                                       CACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGAACGGTGTCGAAT       <  SRR4302536.5298600/94‑1 (MQ=60)
                                                                                        ACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGAACGGTGTCGAATA      <  SRR4302536.2105949/94‑1 (MQ=60)
                                                                                         CCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGAACGGTGTCGAATAA     <  SRR4302536.1522241/94‑1 (MQ=60)
                                                                                           GCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGAACGGTGTCGAATAACA   <  SRR4302536.6391429/94‑1 (MQ=60)
                                                                                           GCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGAACGGTGTCGAATAACA   >  SRR4302536.4862983/1‑94 (MQ=60)
                                                                                            CGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGAACGGTGTCGAATAACAG  <  SRR4302536.4897600/94‑1 (MQ=60)
                                                                                             |                                                                                            
GTTCGCTAAGTCGGTAATCGGGTTCAGCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCACCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGAACGGTGTCGAATAACAG  >  NC_000913/2297242‑2297427

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑