Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1475	266.7	13469680	98.2%	13227225	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,360,682	T→C	A324A (GCA→GCG)	b2249 ←	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,360,682	0	T	C	99.4%	519.8 / NA	167	A324A (GCA→GCG)	b2249	hypothetical protein
Reads supporting (aligned to +/- strand): ref base T (0/0); major base C (109/57); minor base G (1/0); total (110/57)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 235 total aligned reads displayed.

AGTGCTGAAACGCACACGCAGAGCGAAAGTGCCGTCTGGCGTGGCTAGCGCAAAGTTGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGTGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCACTTCACA  >  NC_000913/2360592‑2360771

aGTGCTGAAACGCACACGCAGAGCGAAAGTGCCGTCTGGCGTGGCTAGCGCAAAGTTGAGATGCTCGTTCTCGAAACCCGAAACAGCCAgcgc                                                                                         >  1:1153755/1‑93 (MQ=255)

 gTGCTGAAACGCACACGCAGAGCGAAAGTGCCGTCTGGCGTGGCTAGCGCAAAGTTGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGCGcc                                                                                        <  2:1783958/93‑1 (MQ=255)

 gTGCTGAAACGCACACGCAGAGCGAAAGTGCCGTCTGGCGTGGCTAGCGCAAAGTTGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGCGcc                                                                                        >  1:1913114/1‑93 (MQ=255)

   gCTGAAACGCACACGCAGAGCGAAAGTGCCGTCTGGCGTGGCTAGCGCAAAGTTGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGCGCCAg                                                                                      <  1:5268532/93‑1 (MQ=255)

   gCTGAAACGCACACGCAGAGCGAAAGTGCCGTCTGGCGTGGCTAGCGCAAAGTTGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGCGCCAg                                                                                      >  1:769259/1‑93 (MQ=255)

    cTGAAACGCACACGCAGAGCGAAAGTGCCGTCTGGCGTGGCTAGCGCAAAGTTGAGATGCTCGTTCTCGAAACCCGAAACAgccagcgccagc                                                                                     <  2:3774689/93‑1 (MQ=255)

    cTGAAACGCACACGCAGAGCGAAAGTGCCGTCTGGCGTGGCTAGCGCAAAGTTGAGATGCTCGTTCTCGAAACCCGAAACAgccagcgccagc                                                                                     <  2:6236235/93‑1 (MQ=255)

     tGAAACGCACACGCAGAGCGAAAGTGCCGTCTGGCGTGGCTAGCGCAAAGTTGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGCGCCAGcc                                                                                    <  2:1508638/93‑1 (MQ=255)

     tGAAACGCACACGCAGAGCGAAAGTGCCGTCTGGCGTGGCTAGCGCAAAGTTGAGATGCTCGGTCTCGACACTCGAAACAGCCAGCGCCAGcc                                                                                    >  1:6433789/1‑93 (MQ=255)

      gAAACGCACACGCAGAGCGAAAGTGCCGTCTGGCGTGGCTAGCGCAAAGTTGAGATGCTCGTTCTCGAAAACCGAAACAGCCAGCGCCAGccg                                                                                   >  1:1434518/1‑92 (MQ=255)

             acacGCAGAGCGAAAGTGCCGTCTGGCGTGGCTAGCGCAAAGTTGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGCGCCAGCCCGGCaaaa                                                                            <  2:4011060/93‑1 (MQ=255)

              cacGCAGAGCGAGAGTGCCGTCTGGCGTGGCTAGCGCAAAGTTGAGATACTCGTTCTCGAAACCCGAAACAGCCAGCGCCAGCCCGGCAAAAt                                                                           >  2:3593147/1‑93 (MQ=255)

              cacGCAGAGCGAAAGTGCCGTCTGGCGTGGCTAGCGCAAAGTTGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGCGCCAGCCCGGCAAAAt                                                                           <  1:6661221/93‑1 (MQ=255)

              cacGCAGAGCGAAAGTGCCGTCTGGCGTGGCTAGCGCAAAGTTGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGCGCCAGCCCGGCAAAAt                                                                           <  2:6109336/93‑1 (MQ=255)

                cGCAGAGCGAAAGTGCCGTCTGGCGTGGCTAGCGCAAAGTTGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGCGCCAGCCCGGCAAAATgg                                                                         <  1:5741250/93‑1 (MQ=255)

                 gCAGAGCGAAAGTGCCGTCTGGCGTGGCTAGCGCAAAGTTGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGCGCCAGCCCGGCAAAATGGt                                                                        >  2:5614302/1‑93 (MQ=255)

                 gCAGAGCGAAAGTGCCGTCTGGCGTGGCTAGCGCAAAGTTGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGCGCCAGCCCGGCAAAATGGt                                                                        <  2:3663648/93‑1 (MQ=255)

                  cAGAGCGAAAGTGCCGTCTGGCGTGGCTAGCGCAAAGTTGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGCGCCAGCCCGGCAAAATGGtt                                                                       <  2:3290789/93‑1 (MQ=255)

                   agagCGAAAGTGCCGTCTGGCGTGGCTAGCGCAAAGTTGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGCGCCAGCCCGGCAAAATGGTTg                                                                      >  1:4943812/1‑93 (MQ=255)

                   agagCGAAAGTGCCGTCTGGCGTGGCTAGCGCAAAGTTGAGATGCTCGTTCTCGAAACACGAAACAGCCAGCGCCAGCCCGGCAAAATGGTTg                                                                      >  1:2913965/1‑93 (MQ=255)

                    gagCGAAAGTGCCGTCTGGCGTGGCTAGCGCAAAGTTGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGCGCCAGCCCGGCAAAATGGTTgg                                                                     >  1:3629140/1‑93 (MQ=255)

                     agCGAAAGTGCCGTCTGGCGTGGCTAGCGCAAAGTTGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGCGCCAGCCCGGCAAAATGGTTGGc                                                                    <  2:6425116/93‑1 (MQ=255)

                     agCGAAAGTGCCGTCTGGCGTGGCTAGCGCAAAGTTGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGCGCCAGCCCGGCAAAATGGTTGGc                                                                    >  2:2086660/1‑93 (MQ=255)

                      gCGAAAGTGCCGTCTGGCGTGGCTAGCGCAAAGTTGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGCGCCAGCCCGGCAAAATGGTTGGcc                                                                   >  1:562127/1‑93 (MQ=255)

                      gCGAAAGTGCCGTCTGGCGTGGCTAGCGCAAAGTTGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGCGCCAGCCCGGCAAAATGGTTGGcc                                                                   >  1:3603598/1‑93 (MQ=255)

                       cGAAAGTGCCGTCTGGCGTGGCTAGCGCAAAGTTGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGCGCCAGCCCGGCAAAATGGTTGGccg                                                                  >  1:4136554/1‑92 (MQ=255)

                          aaGTGCCGTCTGGCGTGGCTAGCGCAAAGTTGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGCGCCAGCCCGGCAAAATGGTTGGCccgcc                                                               <  2:3330296/93‑1 (MQ=255)

                          aaGTGCCGTCTGGCGTGGCTAGCGCAAAGTTGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGCGCCAGCCCGGCAAAATGGTTGGCccgcc                                                               <  2:1272378/93‑1 (MQ=255)

                           aGTGCCGTCTGGCGTGGCTAGCGCAAAGTTGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGCGCCAGCCCGGCAAAATGGTTGGCccgccg                                                              >  1:54085/1‑93 (MQ=255)

                            gTGCCGTCTGGCGTGGCTAGCGCAAAGTTGAGATGCTCTTTCTCGAAACCCGAAACAGCCAGCGCCAGCCCGGCAAAATGGTTGGCCCGCCGt                                                             <  2:1561336/93‑1 (MQ=255)

                            gTGCCGTCTGGCGTGGCTAGCGCAAAGTTGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGCGCCAGCCCGGCAAAATGGTTGGCCCGCCGt                                                             <  2:4571897/93‑1 (MQ=255)

                            gTGCCGTCGGGCGTGGCTAGCGCAAAGTTGAGATGCTCGTTCTCGAACCCCGAAACAGCCAGCGCCAGCCCGGCAAAATGGTTGGCCCGCCGt                                                             <  1:507671/93‑1 (MQ=255)

                              gCCGTCTGGCGTGGCTAGCGCAAAGTTGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGCGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTc                                                           <  2:5037465/93‑1 (MQ=255)

                              gCCGTCTGGCGTGGCTAGCGCAAAGTTGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGCGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTc                                                           <  2:5153277/93‑1 (MQ=255)

                              gCCGTCTGGCGTGGCTAGCGCAAAGTTGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGCGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTc                                                           <  1:5430495/93‑1 (MQ=255)

                                cGTCTGGCGTGGCTAGCGCAAAGTTGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGCGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTg                                                         <  1:3918230/93‑1 (MQ=255)

                                 gTCTGGCGTGGCTAGCGCAAAGTTGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGCGCCAGCCCGGCAAAATGGTTGGCCCGCCATTCTga                                                        >  2:4945797/1‑92 (MQ=255)

                                  tCTGGCGTGGCTAGCGCAAAGTTGAGATGCTCGTTCTCGGAACCCGAAACAGCCAGCGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTGTa                                                       >  2:4819542/1‑93 (MQ=255)

                                  tCTGGCGTGGCTAGCGCAAAGTTGAGATGCTCGTTCTCGAACCCCGAATCAGCCAGCGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTGTa                                                       <  2:5717823/93‑1 (MQ=255)

                                   cTGGCGTGGCTAGCGCAAATTTGAGATCCTCGTTCTCGAACCCCGAAACAGCCAGCGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTGTaa                                                      <  1:1842826/93‑1 (MQ=255)

                                   cTGGCGGGGCTAGCGAAAAGTTGAGATGCTCTTTCTCGAAACCCGAAACAGCCAGCGCCGGCCGGGCAAAATGGTTGGCCCGCCGTTCTGTaa                                                      <  2:6174477/93‑1 (MQ=255)

                                     ggCGTGGCTAGCGCAAAGTTGAGATGCTCGTTCTCGAACCCCGAAACAGCCAGCGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTGTAATc                                                    <  2:2737258/93‑1 (MQ=255)

                                     ggCGTGGCTAGCGCAAAGTTGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGCGCCAGCCCGGCAAAATGGTTGGGCCGCCGTTCTGTAATc                                                    >  1:4355535/1‑93 (MQ=255)

                                      gctgggCTAGCGCAAAGTGGGGATGCTCGTTCTCGAAACCCGAAAAAGCCAGCGCCACCCCGCCAAAATGGTTGGCCCGCCGTTCTGTAATcc                                                   <  2:492125/89‑1 (MQ=255)

                                      gCGTGGCTAGCGCAAAGTTGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGCGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTGTAATcc                                                   >  2:5331010/1‑93 (MQ=255)

                                      gCGTGGCTAGCGCAAAGTTGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGCGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTGTAATcc                                                   >  2:1366810/1‑93 (MQ=255)

                                        gTGGCTAGCGCAAAGTTGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGCGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTGTAATCCAg                                                 >  2:680371/1‑93 (MQ=255)

                                         tgtcTAGCGAAAAGTTGAGAGCCTCTTTCTCGACACCCGAACCAGCCAGCGCCAGCCCGGCAAATTGGTTGCCCCGCCGTTCTGTAATCCAGt                                                <  2:4336693/90‑1 (MQ=255)

                                         tGGCTAGCGCAAAGTTGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGCGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTGTAATCCAGt                                                >  2:867179/1‑93 (MQ=255)

                                           gCTAGCGCAAATTTGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGCGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTgc                                              <  1:3078490/93‑1 (MQ=255)

                                           gCTAGCGCAAAGTTGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGCGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTgc                                              >  1:6177503/1‑93 (MQ=255)

                                            cTAGCGCAAAGTTGAGATGCTCGTTCTCGAACCCCGAAACAGCCAGCGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTgcg                                             <  1:3905537/93‑1 (MQ=255)

                                             tAGCGAAAAGTTGAGATGCTCGTTCTCGAACCCCGAAACAGCCAGCGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTgcgc                                            <  2:430157/93‑1 (MQ=255)

                                                cgaaaaGTTGAGATGCTCTTCCTCAAAACCCGAAACAGCCAGCGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGt                                         <  1:2389492/90‑1 (MQ=255)

                                                 gcAAAGTTGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGCGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGtt                                        >  2:4081136/1‑93 (MQ=255)

                                                  cAAAGTTGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGCGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGttt                                       >  1:5957736/1‑93 (MQ=255)

                                                    aaGTTGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGCGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTgc                                     >  2:1136395/1‑93 (MQ=255)

                                                      gTTGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGCGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTgcgc                                   >  1:1236040/1‑93 (MQ=255)

                                                       ttGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGCGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGcc                                  <  2:5347268/93‑1 (MQ=255)

                                                       ttGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGCGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGcc                                  >  2:2260224/1‑93 (MQ=255)

                                                        tGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGCGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCa                                 >  1:2091388/1‑93 (MQ=255)

                                                        gaagaTGCCCCTCCTCAAAACCCGAACCAGCCAGCGCCCGCCGGTCAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCa                                 <  2:2654888/91‑1 (MQ=255)

                                                         gagaTGCTCGTTCTGGAAACCCGAAACAGCCAGCGCCAGCCGGGCAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAg                                <  2:1020655/93‑1 (MQ=255)

                                                         gagaTGCTCGTTCTCGAAACCCGAAACAGCCAGCGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAg                                >  1:586306/1‑93 (MQ=255)

                                                         gagaTGCTCGTTCCCGAAACCCAAAACAGCCACGCCCAGCCCGGAAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAg                                <  1:639459/93‑1 (MQ=255)

                                                         gagaGGCTCTTTCTCGAACCGCGAACCAGCGAGCTCGCGCCGGGCAAATTGGTGGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAg                                <  2:3933334/93‑1 (MQ=255)

                                                          agaTGCTCGTTCTCGAACCCCGAAACAGCCAGCGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAgg                               <  1:1685510/93‑1 (MQ=255)

                                                           gaggCTCTTTCTCGAAACCCGAAACAGCCAGCGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAggg                              <  2:198350/90‑1 (MQ=255)

                                                           gaTGCTCGTTCTCGAAACCTGAAACAGCCAGCGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAggg                              >  1:6545278/1‑93 (MQ=255)

                                                           gaTGCTCGTTCTCGAAACCCGAAACAGCCAGCGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAggg                              >  2:3269074/1‑93 (MQ=255)

                                                            aTGCTCGTTCTCGAAACCCGAAACAGCCAGCGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGt                             >  1:1564948/1‑93 (MQ=255)

                                                             tGCTCGTTCTCGAAACCCGAAACAGCCAGCGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGtt                            >  2:248939/1‑93 (MQ=255)

                                                             tGCTCGTCCTCAAACCCCAAACCAGCCAGCGCCAGCCCGGCAAAATGGTGGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGtt                            <  1:4879930/93‑1 (MQ=255)

                                                              gCTCGTTCTCGAAACCCGAAACGGCCAGCGCCAGCCCGGAAAAATGGTGGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGttt                           <  1:2908885/93‑1 (MQ=255)

                                                                ccGTTCTCAAAACCGAAAACAGCCAGCGCCACCCGGGAAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTtcc                         <  1:475769/92‑1 (MQ=255)

                                                                 cGTTCTCAAACCCGGAAACAGCCAGCGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTtcct                        <  1:6401215/93‑1 (MQ=255)

                                                                  gTTCTCGAAACCCGAAACAGCCAGCGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTtcctc                       >  2:2359769/1‑93 (MQ=255)

                                                                   ttCTCGAACCCCAAAACAGCCAGCGCGAGCCCGGCAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTtcctcc                      <  2:4593355/93‑1 (MQ=255)

                                                                   ttCTCGAAACCCGAAACAGCCAGCGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTtcctcc                      >  1:3249870/1‑93 (MQ=255)

                                                                      tcGAAACCCGAAACAGCCAGCGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCtgt                   >  2:4381825/1‑93 (MQ=255)

                                                                      ccGAACCCCGAAACAGCCAGCGCCAGCCCGGAAAAATGGTTGCCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCtgt                   <  1:1970086/92‑1 (MQ=255)

                                                                        gAAACCCGAAACAGCCAGCGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGa                 >  2:5003845/1‑93 (MQ=255)

                                                                        aaaaCCCGAAACAGCCAGCGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGa                 >  2:6321093/2‑93 (MQ=255)

                                                                         aaccccGAAACAGCCAGCGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGaa                <  2:3249048/90‑1 (MQ=255)

                                                                         aaaCCCGAAACAGCCAGCGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGaa                >  2:539372/1‑93 (MQ=255)

                                                                          accccGAAACAGCCAGCGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAg               <  1:2246444/91‑1 (MQ=255)

                                                                          aaCCCGAAACAGCCAGCGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAg               >  2:2069658/1‑93 (MQ=255)

                                                                          aaCCCGAAACAGCCAGCGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAg               >  2:1678763/1‑93 (MQ=255)

                                                                          aaCCCGAAACAGCCAGCGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAg               >  1:4218258/1‑93 (MQ=255)

                                                                           aCCCGAAACAGCCAGCGCCAGCCCGGCAAAATGGTTGGCCCGCAGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTACTGTGATgg              >  1:5323546/1‑93 (MQ=255)

                                                                            ccgaaaaCAGCCAGCCCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGa             <  2:3368560/89‑1 (MQ=255)

                                                                            cccGAAACAGCCAGCGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGa             >  1:4089174/1‑93 (MQ=255)

                                                                              cGAAACAGCCAGCGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAAc           >  2:5286582/1‑93 (MQ=255)

                                                                                aaaaAGCCAGCGCCAGCCCGGCAAAATGGTTGCCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCa         <  1:6090536/93‑1 (MQ=255)

                                                                                 accagccagcGCCACCCCGGAAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCAc        <  2:3857140/91‑1 (MQ=255)

                                                                                 aaCAGCCAGCGCCAGCCCGGAAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCAc        <  2:6141296/93‑1 (MQ=255)

                                                                                  aCAGCCAGCGCCAGCCCGGCAAAATGGGTGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCACt       >  1:2968166/1‑93 (MQ=255)

                                                                                   cagccagcGCCAGCGCGGCAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCACtt      <  1:3138915/93‑1 (MQ=255)

                                                                                   cagccagcGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCACtt      >  1:1164229/1‑93 (MQ=255)

                                                                                     gccagcgccagcCCGGCAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCACTTca    >  2:1725373/1‑93 (MQ=255)

AGTGCTGAAACGCACACGCAGAGCGAAAGTGCCGTCTGGCGTGGCTAGCGCAAAGTTGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGTGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCACTTCACA  >  NC_000913/2360592‑2360771

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 24 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CGTAGTGCTGAAACGCACACGCAGAGCGAAAGTGCCGTCTGGCGTGGCTAGCGCAAAGTTGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGTGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCACTTCACACGCC  >  NC_000913/2360589‑2360775

CGTAGTGCTGAAACGCACACGCAGAGCGAAAGTGCCGTCTGGCGTGGCTAGCGCAAAGTTGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGC                                                                                               >  SRR4302536.720354/1‑94 (MQ=60)

 GTAGTGCTGAAACGCACACGCAGAGCGAAAGTGCCGTCTGGCGTGGCTAGCGCAAAGTTGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGCG                                                                                              >  SRR4302536.423960/1‑94 (MQ=60)

  TAGTGCTGAAACGCACACGCAGAGCGAAAGTGCCGTCTGGCGTGGCTAGCGCAAAGTTGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGCGC                                                                                             >  SRR4302536.1188481/1‑94 (MQ=60)

  TAGTGCTGAAACGCACACGCAGAGCGAAAGTGCCGTCTGGCGTGGCTAGCGCAAAGTTGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGCGC                                                                                             <  SRR4302536.5922351/94‑1 (MQ=60)

   AGTGCTGAAACGCACACGCAGAGCGAAAGTGCCGTCTGGCGTGGCTAGCGCAAAGTTGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGCGCC                                                                                            >  SRR4302536.5535732/1‑94 (MQ=60)

   AGTGCTGAAACGCACACGCAGAGCGAAAGTGCCGTCTGGCGTGGCTAGCGCAAAGTTGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGCGCC                                                                                            >  SRR4302536.490735/1‑94 (MQ=60)

   AGTGCTGAAACGCACACGCAGAGCGAAAGTGCCGTCTGGCGTGGCTAGCGCAAAGTTGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGCGCC                                                                                            >  SRR4302536.1970668/1‑94 (MQ=60)

    GTGCTGAAACGCACACGCAGAGCGAAAGTGCCGTCTGGCGTGGCTAGCGCAAAGTTGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGCGCCA                                                                                           <  SRR4302536.6671534/94‑1 (MQ=60)

     TGCTGAAACGCACACGCAGAGCGAAAGTGCCGTCTGGCGTGGCTAGCGCAAAGTTGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGCGCCAG                                                                                          >  SRR4302536.791814/1‑94 (MQ=60)

     TGCTGAAACGCACACGCAGAGCGAAAGTGCCGTCTGGCGTGGCTAGCGCAAAGTTGAGATGCTCGTTCTCGAAACCCGAAAAAGCCAGCGCCAG                                                                                          >  SRR4302536.6619351/1‑94 (MQ=60)

      GCTGAAACGCACACGCAGAGCGAAAGTGCCGTCTGGCGTGGCTAGCGCAAAGTTGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGCGCCAGC                                                                                         <  SRR4302536.5425556/94‑1 (MQ=60)

      GCTGAAACGCACACGCAGAGCGAAAGTGCCGTCTGGCGTGGCTAGCGCAAAGTTGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGCGCCAGC                                                                                         <  SRR4302536.3114278/94‑1 (MQ=60)

       CTGAAACGCACACGCAGAGCGAAAGTGCCGTCTGGCGTGGCTAGCGCAAAGTTGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGCGCCAGCC                                                                                        >  SRR4302536.6533733/1‑94 (MQ=60)

       CTGAAACGCACACGCAGAGCGAAAGTGCCGTCTGGCGTGGCTAGCGCAAAGTTGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGCGCCAGCC                                                                                        >  SRR4302536.1661288/1‑94 (MQ=60)

       CTGAAACGCACACGCAGAGCGAAAGTGCCGTCTGGCGTGGCTAGCGCAAAGTTGAGATGCTCGGTCTCGACACTCGAAACAGCCAGCGCCAGCC                                                                                        >  SRR4302536.6626080/1‑94 (MQ=60)

        TGAAACGCACACGCAGAGCGAAAGTGCCGTCTGGCGTGGCTAGCGCAAAGTTGAGATGCTCGTTCTCGAAAACCGAAACAGCCAGCGCCAGCCG                                                                                       >  SRR4302536.1477081/1‑94 (MQ=60)

           AACGCACACGCAGAGCGAAAGTGCCGTCTGGCGTGGCTAGCGCAAAGGTGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGCGCCAGCCCGGC                                                                                    >  SRR4302536.4278513/1‑94 (MQ=60)

              GCACACGCAGAGCGAAAGTGCCGTCTGGCGTGGCTAGCGCAAAGATGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGCGCCAGCCCGGCAAA                                                                                 >  SRR4302536.3030689/1‑94 (MQ=60)

                ACACGCAGAGCGAAAGTGCCGTCTGGCGTGGCTAGCGCAAAGTTGAGATGCTCGTTCTCGAACCCCGAAACAGCCAGCGCCAGCCCGGCAAAAT                                                                               <  SRR4302536.5637433/94‑1 (MQ=60)

                ACACGCAGAGCGAAAGTGCCGTCTGGCGTGGCTAGCGCAAAGCTGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGCGCCAGCCCGGCAAAAT                                                                               >  SRR4302536.6343925/1‑94 (MQ=60)

                 CACGCAGAGCGAAAGTGCCGTCTGGCGTGGCTAGCGCAAAGTTGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGCGCCAGCCCGGCAAAATG                                                                              <  SRR4302536.6859183/94‑1 (MQ=60)

                 CACGCAGAGCGAAAGTGCCGTCTGGCGTGGCTAGCGCAAAGTTGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGCGCCAGCCCGGCAAAATG                                                                              >  SRR4302536.5829456/1‑94 (MQ=60)

                 CACGCAGAGCGAAAGTGCCGTCTGGCGTGGCTAGCGCAAAGTTGAGATGCTCGTTCTCGAAACCCGAAACAGCCACCGACAGCCCGGCAAAATG                                                                              >  SRR4302536.2999265/1‑94 (MQ=60)

                  ACGCAGAGCGAAAGTGCCGTCTGGCGTGGCTAGCGCAAAGTTGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGCGCCAGCCCGGCAAAATGG                                                                             <  SRR4302536.6689193/94‑1 (MQ=60)

                  ACGCAGAGCGAAAGTGCCGTCTGGCGTGGCTAGCGCAAAGTTGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGCGCCAGCCCGGCAAAATGG                                                                             >  SRR4302536.5991186/1‑94 (MQ=60)

                   CGCAGAGCGAAAGTGCCGTCTGGCGTGGCTAGCGCAAAGTTGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGCGCCAGCCCGGCAAAATGGT                                                                            >  SRR4302536.5577977/1‑94 (MQ=60)

                   CGCAGAGCGAAAGTGCCGTCTGGCGTGGCTAGCGCAAAGTTGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGCGCCAGCCCGGCAAAATGGT                                                                            <  SRR4302536.5912044/94‑1 (MQ=60)

                    GCAGAGCGAAAGTGCCGTCTGGCGTGGCTAGCGCAAAGTTGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGCGCCAGCCCGGCAAAATGGTT                                                                           <  SRR4302536.1406567/94‑1 (MQ=60)

                    GCAGAGCGAAAGTGCCGTCTGGCGTGGCTAGCGCAAAGTTGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGCGCCAGCCCGGCAAAATGGTT                                                                           <  SRR4302536.2574620/94‑1 (MQ=60)

                     CAGAGCGAAAGTGCCGTCTGGCGTGGCTAGCGCAAAGTTGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGCGCCAGCCCGGCAAAATGGTTG                                                                          >  SRR4302536.6591598/1‑94 (MQ=60)

                     CAGAGCGAAAGTGCCGTCTGGCGTGGCTAGCGCAAAGTTGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGCGCCAGCCCGGCAAAATGGTTG                                                                          <  SRR4302536.1207167/94‑1 (MQ=60)

                     CAGAGCGAAAGTGCCGTCTGGCGTGGCTAGCGCAAAGTTGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGCGCCAGCCCGGCAAAATGGTTG                                                                          >  SRR4302536.5092377/1‑94 (MQ=60)

                     CAGAGCGAAAGTGCCGTCTGGCGTGGCTAGCGCAAAGTTGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGCGCCAGCCCGGCAAAATGGTTG                                                                          >  SRR4302536.2126729/1‑94 (MQ=60)

                     CAGAGCGAAAGTGCCGTCTGGCGTGGCTAGCGCAAAGTTGAGATGCTCGTTCTCGAAACACGAAACAGCCAGCGCCAGCCCGGCAAAATGGTTG                                                                          >  SRR4302536.2999984/1‑94 (MQ=60)

                      AGAGCGAAAGTGCCGTCTGGCGTGGCTAGCGCAAAGTTGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGCGCCAGCCCGGCAAAATGGTTGG                                                                         >  SRR4302536.3411560/1‑94 (MQ=60)

                      AGAGCGAAAGTGCCGTCTGGCGTGGCTAGCGCAAAGTTGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGCGCCAGCCCGGCAAAATGGTTGG                                                                         >  SRR4302536.3737684/1‑94 (MQ=60)

                      AGAGCGAAAGTGCCGTCTGGCGTGGCTAGCGCAAAGTTGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGCGCCAGCCCGGCAAAATGGGTGG                                                                         >  SRR4302536.1407609/1‑94 (MQ=60)

                        AGCGAAAGTGCCGTCTGGCGTGGCTAGCGCAAAGTTGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGCGCCAGCCCGGCAAAATGGTTGGCC                                                                       >  SRR4302536.3711360/1‑94 (MQ=60)

                        AGCGAAAGTGCCGTCTGGCGTGGCTAGCGCAAAGTTGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGCGCCAGCCCGGCAAAATGGTTGGCC                                                                       >  SRR4302536.576450/1‑94 (MQ=60)

                         GCGAAAGTGCCGTCTGGCGTGGCTAGCGCAAAGTTGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGCGCCAGCCCGGCAAAATGGTTGGCCG                                                                      >  SRR4302536.4259197/1‑94 (MQ=60)

                           GAAAGTGCCGTCTGGCGTGGCTAGCGCAAAGTTGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGCGCCAGCCCGGCAAAATGGTTGGCCCGC                                                                    <  SRR4302536.2344924/94‑1 (MQ=60)

                             AAGTGCCGTCTGGCGTGGCTAGCGCAAAGTTGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGGGCCAGCCCGGCAAAATGGTTGGCCCGCCG                                                                  >  SRR4302536.381800/1‑94 (MQ=60)

                             AAGTGCCGTCTGGCGTGGCTAGCGCAAAGTTGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGCGCCAGCCCGGCAAAATGGTTGGCCCGCCG                                                                  >  SRR4302536.55589/1‑94 (MQ=60)

                               GTGCCGTCTGGCGTGGCTAGCGCAAAGTTGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGCGCCAGCCCGGCAAAATGGTTGGCCCGCCGTT                                                                >  SRR4302536.3992851/1‑94 (MQ=60)

                               GTGCCGTCGGGCGTGGCTAGCGCAAAGTTGAGATGCTCGTTCTCGAACCCCGAAACAGCCAGCGCCAGCCCGGCAAAATGGTTGGCCCGCCGTT                                                                <  SRR4302536.520698/94‑1 (MQ=60)

                                 GCCGTCTGGCGTGGCTAGCGCAAAGTTGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGCGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCT                                                              <  SRR4302536.5592865/94‑1 (MQ=60)

                                  CCGTCTGGCGTGGCTAGCGCAAAGTTGAGATGCTCGTTCTCGAACCCCGAAACAGCCAGCGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTG                                                             <  SRR4302536.4093398/94‑1 (MQ=60)

                                  CCGTCTGGCGTGGCTAGCGCAAAGTTGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGCGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTG                                                             >  SRR4302536.3436248/1‑94 (MQ=60)

                                   CGTCTGGCGTGGCTAGCGCAAAGTTGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGCGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTGT                                                            >  SRR4302536.4247745/1‑94 (MQ=60)

                                   CGTCTGGCGTGGCTAGCGCAAAGTTGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGCGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTGT                                                            <  SRR4302536.4034701/94‑1 (MQ=60)

                                      CTGGCGTGGCTAGCGCAAATTTGAGATCCTCGTTCTCGAACCCCGAAACAGCCAGCGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTGTAAT                                                         <  SRR4302536.1898357/94‑1 (MQ=60)

                                      CTGGCGTGCCTAGCGAAAAGTTGAGATGCTCGTTCTCAAAACCCAAAACAGCCAGCGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTGTAAT                                                         <  SRR4302536.2633729/94‑1 (MQ=60)

                                      CCGGCGTGGCGAGCGCAAAGTTGAGATCTTCCTTCTCGAAACCCGAAACAGCGAGCGCCAGCCCGACAAAATGGTGGGCCCGCCGTTCTGTAAT                                                         <  SRR4302536.4570009/94‑1 (MQ=60)

                                       TGGCGTGGCTAGCGCAAAGTTGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGCGCCAGCCCGGCAAAATGGTTGGGCCGCCGTTCTGTAATC                                                        >  SRR4302536.4485805/1‑94 (MQ=60)

                                        GGGGTGGCTAGCGCAAAGTTGAGATGCTCGTTCACGAAACCCGAAACAGCCAGCCCCAGCCCGGAAAAATGGTTGGCCCGCCGTTCTGTAATCC                                                       <  SRR4302536.4575265/94‑1 (MQ=60)

                                          GGTGGCTAGCGCAAATTTGAGATGCTCGTTCTCGAACCCCAAAACAGCCAGCGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTGTAATCCAG                                                     <  SRR4302536.2732606/94‑1 (MQ=60)

                                          GGTGGCTAGCGCAAAGTTGAGATGCTCGTTCTCGAACCCCGAAACAGCCAGCGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTGTAATCCAG                                                     <  SRR4302536.296983/94‑1 (MQ=60)

                                          GGTGGCTAGCGCAAAGTGGAGATGCTCGTTCTCGAACCCCGAAACAGCCAGCGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTGTAATCCAG                                                     <  SRR4302536.78434/94‑1 (MQ=60)

                                          CGTGGCTAGCGCAAAGTTGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGCGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTGTAATCCAG                                                     >  SRR4302536.4242713/1‑94 (MQ=60)

                                          CGTGGCTAGCGCAAAGTTGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGCGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTGTAATCCAG                                                     >  SRR4302536.1923234/1‑94 (MQ=60)

                                            GGGCTAGCGCAAAGTTGAGATGCTCGTTCTCGAACCCCGAAACAGCCAGCGCCAGCCCGGAAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTG                                                   <  SRR4302536.4923944/94‑1 (MQ=60)

                                             GGCTAGCGCAAAGTTGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGCGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTGC                                                  >  SRR4302536.6361500/1‑94 (MQ=60)

                                              GCTAGCGCAAATTTGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGCGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTGCG                                                 <  SRR4302536.3168614/94‑1 (MQ=60)

                                              GCTAGCGCAAAGTTGAGATGCTCGTTCTCGAACCCCGAAACAGCCAGCGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTGCG                                                 <  SRR4302536.5450386/94‑1 (MQ=60)

                                               CTAGCGCAAAGTTGAGATGCTCGTTCTCGAACCCCGAAACAGCCAGCGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTGCGC                                                <  SRR4302536.4021617/94‑1 (MQ=60)

                                                TAGCGCAAAGTTGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGCGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTGCGCA                                               >  SRR4302536.5331776/1‑94 (MQ=60)

                                                  gcacaaggtgGAGATCCTCGTTCTGGACACCAGAAACCGCCAGCGCCCGCCCGGAAAAGTGGTTGCCCCGCCGTTCTGTAATCCAGTGCGCAGT                                             <  SRR4302536.226716/84‑1 (MQ=25)

                                                  GCGCAAAGTTGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGCGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGT                                             >  SRR4302536.674604/1‑94 (MQ=60)

                                                   CGCAAAGTTGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGCGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGTT                                            >  SRR4302536.2883131/1‑94 (MQ=60)

                                                   CGAAAAGTTGAGATGCTCTTCCTCAAAACCCGAAACAGCCAGCGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGTT                                            <  SRR4302536.2461833/94‑1 (MQ=60)

                                                    GCAAAGTTGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGCGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTT                                           >  SRR4302536.6135274/1‑94 (MQ=60)

                                                    GCAAAGTTGAGATGCCCGTTCTGGAACCCCGAAACAGCCAGCGCCAGCCGGGCAAAATGTTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTT                                           <  SRR4302536.1085424/94‑1 (MQ=60)

                                                     aaaagttgagatgcgcgtccgcaaacccgGAAACAGCCAGCGCCAGCCCGGAAAAATGGTGGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTG                                          <  SRR4302536.207851/65‑1 (MQ=60)

                                                     CAAAGTTGAGATGCTCGTTCTCGAAACCAGAAACAGCCAGCGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTG                                          <  SRR4302536.5192182/94‑1 (MQ=60)

                                                       agtTTGAGATGCTCATCCTCAAACCCCGAAACAGCCAGCCCAAGCCCGGAAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCG                                        <  SRR4302536.2836059/91‑1 (MQ=59)

                                                       AGGTTGAGATCCTCGTTCTCGAACCCCGAAACAGCCAGCGCCAGCCGGGAAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCG                                        <  SRR4302536.800777/94‑1 (MQ=60)

                                                        AGTTGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGCGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTGTGTAATCCAGTGCGCAGTTTGCGC                                       >  SRR4302536.3726067/1‑94 (MQ=60)

                                                        AGTTGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGCGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGC                                       >  SRR4302536.1273158/1‑94 (MQ=60)

                                                          TTGAGATGCTCGTTCTCGAAACCGGAAACAGCCAGCGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCA                                     <  SRR4302536.1865331/94‑1 (MQ=60)

                                                          TTGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGCGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCA                                     >  SRR4302536.2154312/1‑94 (MQ=60)

                                                          TTGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGCGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCA                                     >  SRR4302536.510011/1‑94 (MQ=60)

                                                           tgagagcctcgtccgcgaaaccgaAAACAGCCAGCGCCACCCCGGAAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAG                                    <  SRR4302536.1525626/70‑1 (MQ=60)

                                                           TGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGCGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAG                                    >  SRR4302536.601390/1‑94 (MQ=60)

                                                           TGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGCGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTGGAATCCAGTGCGCAGTTTGCGCCAG                                    >  SRR4302536.3737290/1‑94 (MQ=60)

                                                            GAGATGCTCGTTCCCGAAACCCAAAACAGCCACGCCCAGCCCGGAAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGG                                   <  SRR4302536.658334/94‑1 (MQ=60)

                                                             AGATGCTCGTTCTCGAACCCCGAAACAGCCAGCGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGG                                  <  SRR4302536.1734344/94‑1 (MQ=60)

                                                             AGATGCTCGTTCTCGAAACCTGAAACAGCCAGCGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGG                                  >  SRR4302536.6740189/1‑94 (MQ=60)

                                                              GATGCTCGTTCTCGAAACCCGAAACAGCCAGCGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGT                                 >  SRR4302536.1610889/1‑94 (MQ=60)

                                                               ATGCTCGTTCTCGAACCCCAAAACAGCCAGCCCCAGCCCGGCAAAATGGTTGCCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTT                                <  SRR4302536.602315/94‑1 (MQ=60)

                                                                TGCTCGTCCTCAAACCCCAAACCAGCCAGCGCCAGCCCGGCAAAATGGTGGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTT                               <  SRR4302536.5026746/94‑1 (MQ=60)

                                                                 GCTCGTTCTCGAAACCCGAAACGGCCAGCGCCAGCCCGGAAAAATGGTGGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTC                              <  SRR4302536.2994746/94‑1 (MQ=60)

                                                                   CCGTTCTCAAAACCGAAAACAGCCAGCGCCACCCGGGAAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCT                            <  SRR4302536.488148/94‑1 (MQ=60)

                                                                    CGTTCTCGAAACCCGAAACAGCCAGCGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTC                           >  SRR4302536.803213/1‑94 (MQ=60)

                                                                    CGTTCTCGAAACCCGAAACAGCCAGCGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTC                           >  SRR4302536.6142100/1‑94 (MQ=60)

                                                                    CGTTCTCAAACCCGGAAACAGCCAGCGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTC                           <  SRR4302536.6592272/94‑1 (MQ=60)

                                                                     GTTCTCGAAACCCGAAACAGCCAGCGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCC                          >  SRR4302536.4023173/1‑94 (MQ=60)

                                                                     GTTCTCGAAACCCGAAACAGCCAGCGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCC                          >  SRR4302536.6400013/1‑94 (MQ=60)

                                                                     GTTCTCGAAACCCGAAACAGCCAGCGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCC                          >  SRR4302536.3345158/1‑94 (MQ=60)

                                                                      TTCTCGAACCCCAAAACAGCCAGCGCCAGCCCGGCAAAATGGTTGCCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCT                         <  SRR4302536.202041/94‑1 (MQ=60)

                                                                       TCTCGAAACCCGAAACAGCCAGCGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTG                        >  SRR4302536.319580/1‑94 (MQ=60)

                                                                        cgcaaccCCCGAAACAGCCAGCGCCAGCCCGGCAAAATGGTGGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGT                       <  SRR4302536.4611723/87‑1 (MQ=60)

                                                                         CCGAACCCCGAAACAGCCAGCGCCAGCCCGGAAAAATGGTTGCCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTG                      <  SRR4302536.2029320/94‑1 (MQ=60)

                                                                          CGAAACCCGAAACAGCCAGCGCCACCCGGGCAAAATGGTGGCCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGA                     <  SRR4302536.2282420/94‑1 (MQ=60)

                                                                            AAACCCGAAACAGCCAGCGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAG                   >  SRR4302536.4343736/1‑94 (MQ=60)

                                                                            AAACCCGAAACAGCCAGCGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAG                   >  SRR4302536.2112073/1‑94 (MQ=60)

                                                                             ACCCCGAAACAGCCAGCGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGG                  <  SRR4302536.2314446/94‑1 (MQ=60)

                                                                             AACCCGAAACAGCCAGCGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGG                  >  SRR4302536.3095730/1‑94 (MQ=60)

                                                                             AACCCGAAACAGCCAGCGCCAGCCCGGCAAAATGGTTGGCCCGCAGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTACTGTGATGG                  >  SRR4302536.5482584/1‑94 (MQ=60)

                                                                              ACCCGAAACAGCCAGCGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGA                 >  SRR4302536.4802627/1‑94 (MQ=60)

                                                                              ACCCGAAACAGCCAGCGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGA                 >  SRR4302536.4210403/1‑94 (MQ=60)

                                                                              ACCCGAAACAGCCAGCGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGA                 >  SRR4302536.181220/1‑94 (MQ=60)

                                                                              ACCCGAAACAGCCAGCGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGA                 >  SRR4302536.5897012/1‑94 (MQ=60)

                                                                                  GAAACAGCCAGCGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCA             >  SRR4302536.1199249/1‑94 (MQ=60)

                                                                                   AAACAGCCAGCGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCAC            >  SRR4302536.5036974/1‑94 (MQ=60)

                                                                                   AAAAAGCCAGCGCCAGCCCGGCAAAATGGTTGCCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCAC            <  SRR4302536.6272166/94‑1 (MQ=60)

                                                                                    AACAGCCAGCGCCAGCCCGGCAAAATGGGTGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCACT           >  SRR4302536.3055594/1‑94 (MQ=60)

                                                                                     ACAGCCAGCGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCACTT          >  SRR4302536.4466842/1‑94 (MQ=60)

                                                                                     ACAGCCAGCGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCACTT          >  SRR4302536.1199272/1‑94 (MQ=60)

                                                                                      CAGCCAGCGCCAGCGCGGCAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCACTTC         <  SRR4302536.3230789/94‑1 (MQ=60)

                                                                                       AGCCAGCGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCACTTCA        >  SRR4302536.6178303/1‑94 (MQ=60)

                                                                                       AGCCAGCGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCACTTCA        >  SRR4302536.5516602/1‑94 (MQ=60)

                                                                                          CAGCGCCAGCCCGGCAAAATGGTTGCCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCACTTCACAC     <  SRR4302536.3231884/94‑1 (MQ=60)

                                                                                           AGCGCCAGCCCGGCAAAATGTTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCACTTCACACG    <  SRR4302536.1980895/94‑1 (MQ=60)

                                                                                           AGCGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGGTTCCTCCTGTGAAGGAACCACTTCACACC    >  SRR4302536.1490622/1‑94 (MQ=60)

                                                                                             CGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCACTTCACACGCC  >  SRR4302536.2015466/1‑94 (MQ=60)

CGTAGTGCTGAAACGCACACGCAGAGCGAAAGTGCCGTCTGGCGTGGCTAGCGCAAAGTTGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGTGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCACTTCACACGCC  >  NC_000913/2360589‑2360775

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 26 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`