Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1475 |
266.7 |
13469680 |
98.2% |
13227225 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,392,487 |
T→C |
T194A (ACC→GCC) |
nuoL ← |
NADH dehydrogenase I chain L |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,392,487 | 0 | T | C | 99.6%
| 721.5
/ ‑4.6
| 230 | T194A (ACC→GCC) | nuoL | NADH dehydrogenase I chain L |
| Reads supporting (aligned to +/- strand): ref base T (1/0); new base C (106/122); total (108/122) |
| Fisher's exact test for biased strand distribution p-value = 4.67e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.10e-01 |
Only 100 of 241 total aligned reads displayed.
CCAGCAGCATCAGCGTCGCCCACATCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGTGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGAACGCTTTCATTGCCGCTGCGC > NC_000913/2392397‑2392576
|
ccAGCAGCATCAGCGTCGCCCACATCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGgcgc < 2:2901148/93‑1 (MQ=255)
ccAGCAGCATCAGCGTCGCCCACATCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGgcgc > 1:841791/1‑93 (MQ=255)
gcaTCAGCGTCGCCCACATCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAggt > 1:4839013/1‑91 (MQ=255)
gcaTCAGCGTCGCCCACATCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAggt > 1:4000107/1‑91 (MQ=255)
gcaTCAGCGTCGCCCACATCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGtt > 2:5253013/1‑93 (MQ=255)
gcaTCAGCGTCGCCCACATCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGtt < 1:312650/93‑1 (MQ=255)
gcaTCAGCGTCGCCCACATCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGATCAGGGCGCCCCGtt > 1:4108079/1‑93 (MQ=255)
tCAGCGTCGCCCACATCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGt < 1:942609/93‑1 (MQ=255)
tCAGCGTCGCCCACATCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGt < 1:6418979/93‑1 (MQ=255)
aGCGTCGCCCACATCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTg > 2:2771580/1‑93 (MQ=255)
gCGTCGCCCACATCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGt < 1:5598441/93‑1 (MQ=255)
gCGTCGCCCACATCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGt < 1:6251928/93‑1 (MQ=255)
gCGTCGCCCACATCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGt < 1:1799697/93‑1 (MQ=255)
cGTCGCCCACATCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTa < 1:6292402/93‑1 (MQ=255)
gTCGCCCACATCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTaa > 2:1583508/1‑93 (MQ=255)
tCGCCCACATCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTaaa < 2:3740482/93‑1 (MQ=255)
cccACATCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGaa < 1:2810348/93‑1 (MQ=255)
cccACATCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGaa > 1:4403748/1‑93 (MQ=255)
cccACATCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGaa < 2:6294571/93‑1 (MQ=255)
ccACATCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAAt > 1:5628318/1‑93 (MQ=255)
ccACATCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAAt < 2:3130146/93‑1 (MQ=255)
cacaTCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATg < 2:4068468/93‑1 (MQ=255)
cacaTCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATg < 1:385067/93‑1 (MQ=255)
cacaTCAGCATGTTATTGCCGTCAGCAAAGCGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGACCAGATCGTTGTAAAGCATg > 1:3217187/1‑93 (MQ=255)
acaTCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGa < 2:1112313/93‑1 (MQ=255)
caTCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGaa < 2:5715041/93‑1 (MQ=255)
caTCAGCATGGTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGaa > 2:4208131/1‑93 (MQ=255)
aTCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAAc < 1:3590676/93‑1 (MQ=255)
aTCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAAc < 2:2037486/93‑1 (MQ=255)
tCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACa > 2:4752105/1‑93 (MQ=255)
cAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAg < 2:5351843/93‑1 (MQ=255)
cAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAg < 2:2308679/93‑1 (MQ=255)
aTGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCg > 1:3510429/1‑93 (MQ=255)
aTGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCg > 1:1284353/1‑93 (MQ=255)
tGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGa > 2:2360163/1‑93 (MQ=255)
tGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGa > 2:6570245/1‑93 (MQ=255)
gTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGaa > 2:4302925/1‑93 (MQ=255)
ttATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAATTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGaaa < 2:3563986/93‑1 (MQ=255)
ttATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGaaa < 1:6390739/93‑1 (MQ=255)
ttATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGaaa < 2:4628081/93‑1 (MQ=255)
ttATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGaaa < 2:2275326/93‑1 (MQ=255)
ttATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGaaa < 2:2092170/93‑1 (MQ=255)
ttATTGCCGTCAGCAAAGTGCGCTCGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGaaa > 2:4660698/1‑93 (MQ=255)
aTTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGc > 2:1983304/1‑93 (MQ=255)
aTTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGc > 1:1401270/1‑93 (MQ=255)
ttGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGAGAAAGca > 2:602151/1‑92 (MQ=255)
tGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTACGAAAGCGa > 1:6651560/1‑93 (MQ=255)
gCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAg < 1:1117669/93‑1 (MQ=255)
gCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAg > 2:5383525/1‑93 (MQ=255)
ccGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGacg < 1:4206593/93‑3 (MQ=255)
ccGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAgg < 2:3436890/93‑1 (MQ=255)
cGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGa < 1:3716394/93‑1 (MQ=255)
aGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAacac > 2:2586319/1‑93 (MQ=255)
gCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACg < 2:1002070/93‑1 (MQ=255)
aaaGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTc < 1:42554/93‑1 (MQ=255)
aGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCAc < 1:5308954/93‑1 (MQ=255)
aGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCAc < 2:2633322/93‑1 (MQ=255)
gTGCGCTGTGGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCAcc < 1:1872206/93‑1 (MQ=255)
gctcTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCAccct < 1:5270796/90‑2 (MQ=255)
gcgcTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCca > 1:4940611/1‑93 (MQ=255)
cTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCacac > 2:6369353/1‑93 (MQ=255)
ggTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGCGGAACACGTCACCCACACgg > 2:1495274/1‑93 (MQ=255)
gTGCCAGTTCGAGCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACggg < 1:1672489/93‑1 (MQ=255)
tGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGt > 1:1181121/1‑93 (MQ=255)
gCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTc > 2:754296/1‑93 (MQ=255)
ccAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCa > 1:6310353/1‑93 (MQ=255)
gTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCacga > 2:5758158/1‑93 (MQ=255)
ttCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCacgac < 2:6136200/93‑1 (MQ=255)
ccaccaTTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCAcgacga > 1:3467981/1‑93 (MQ=255)
ccaccaTTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCAcgacga > 2:285897/1‑93 (MQ=255)
caccaTTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGaa > 1:4545441/1‑93 (MQ=255)
caccaTTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGaa > 2:2167184/1‑93 (MQ=255)
caccaTTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGaa > 1:2349620/1‑93 (MQ=255)
caccaTTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGACACGACGaa > 1:6564275/1‑93 (MQ=255)
accaTTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGAAc > 1:583667/1‑93 (MQ=255)
ccaTTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGAACg > 1:543770/1‑93 (MQ=255)
ccaTTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGAACg > 2:5026923/1‑93 (MQ=255)
ccaTTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGAACg > 2:458129/1‑93 (MQ=255)
caTTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGacgcacgc > 1:270943/1‑93 (MQ=255)
aTTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGAACGCt > 1:3163647/1‑93 (MQ=255)
tttCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCTAGTAACACGTCACCCACACGGGTCACGACGAACGCtt < 1:6466906/93‑1 (MQ=255)
ttCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGAACGCttt < 1:5867657/93‑1 (MQ=255)
gcgGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGAACGCTTTCAt < 1:5093445/93‑1 (MQ=255)
gcgGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGAACGCTTTCAt < 2:1420602/93‑1 (MQ=255)
gcgGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGAACGCTTTCAt < 2:1691524/93‑1 (MQ=255)
gcgGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGAACGCTTTCAt < 2:1917515/93‑1 (MQ=255)
gAAGTTCAGGTCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGAACGCTTTCATTGc < 1:4018481/93‑1 (MQ=255)
gAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGAACGCTTTCATTGc < 2:6391178/93‑1 (MQ=255)
gAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGAACGCTTTCATTGc > 1:3317869/1‑93 (MQ=255)
gAAGTTCAGGGCGCCCAGGTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACCGGCCACGACGAACGCTTTCATTGc > 1:1549789/1‑93 (MQ=255)
gAAGTTCAGGGCGCCAAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGAAAGCATTTATTGc > 1:5170921/1‑93 (MQ=255)
aaGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGAACGCTTTCATTGcc > 1:303672/1‑93 (MQ=255)
gTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGAACGCTTTCATTGCCGc > 1:2267858/1‑93 (MQ=255)
tCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGAACGCTTTCATTGCCGCTg < 2:4344077/93‑1 (MQ=255)
tCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGAACGCTTTCATTGCCGCTg > 1:681846/1‑93 (MQ=255)
cAGGGCGCCGAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGAACGCTTTCATTGCCGCTgc < 1:100989/93‑1 (MQ=255)
cAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGAACGCTTTCATTGCCGCTgc < 1:2446095/93‑1 (MQ=255)
cAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGAACGCTTTCATTGCCGCTgc < 2:3270777/93‑1 (MQ=255)
aGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGAACGCTTTCATTGCCGCTgcg > 1:6034007/1‑93 (MQ=255)
gggCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGAACGCTTTCATTGCCGCTgcgc > 1:6114437/1‑93 (MQ=255)
|
CCAGCAGCATCAGCGTCGCCCACATCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGTGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGAACGCTTTCATTGCCGCTGCGC > NC_000913/2392397‑2392576
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CGCCCAGCAGCATCAGCGTCGCCCACATCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGTGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGAACGCTTTCATTGCCGCTGCGCCATT > NC_000913/2392394‑2392580
|
CGCCCAGCAGCATCAGCGTCGCCCACATCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGC > SRR4302536.6340996/1‑94 (MQ=60)
CGCCCAGCAGCATCAGCGTCGCCCACATCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGC < SRR4302536.4408778/94‑1 (MQ=60)
GCCCAGCAGCATCAGCGTCGCCCACATCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCG > SRR4302536.6547904/1‑94 (MQ=60)
GCCCAGCAGCATCAGCGTCGCCCACATCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCG < SRR4302536.5211991/94‑1 (MQ=60)
CCCAGCAGCATCAGCGTCGCCCACATCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGC > SRR4302536.866539/1‑94 (MQ=60)
AGCAGCATCAGCGTGTCCCACATCAGCATGTTATTGCCGTCATCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAATTTCAGGGCTCCCA < SRR4302536.993852/94‑1 (MQ=60)
AGCAGCATCAGCGTCGCCCACATCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCA < SRR4302536.1293641/94‑1 (MQ=60)
CAGCATCAGCGTCGCCCACATCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGT < SRR4302536.3333876/94‑1 (MQ=60)
cgcattaggGTCGCCCACATCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTT < SRR4302536.5072990/85‑1 (MQ=60)
AGCATCAGCGTCGCCCACATCAGCATGTTATTGCCGTTAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTT > SRR4302536.411555/1‑94 (MQ=60)
AGCATCAGCGTCGCCCACATCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTT > SRR4302536.5302424/1‑94 (MQ=60)
AGCATCAGCGTCGCCCACATCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGGT > SRR4302536.4118798/1‑94 (MQ=60)
AGCATCAGCGTCGCCCACATCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGGT > SRR4302536.4984660/1‑94 (MQ=60)
AGCATCAGCGTCGCCCACATCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGATCAGGGCGCCCCGTT > SRR4302536.4229950/1‑94 (MQ=60)
GCATCAGCGTCGCCCACATCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTC < SRR4302536.320932/94‑1 (MQ=60)
ATCAGCGTCGCCCACATCAGCATGTTATTGCTGTCAGCAAAGTGCGCTGGTGCCGGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGT < SRR4302536.3450521/94‑1 (MQ=60)
ATCAGCGTCGCCCACATCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGT < SRR4302536.4434563/94‑1 (MQ=60)
TCAGCGTCGCCCACATCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTT < SRR4302536.6610809/94‑1 (MQ=60)
TCAGCGTCGCCCACATCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTT < SRR4302536.970425/94‑1 (MQ=60)
TCAGCGTCGCCCACATCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTT < SRR4302536.3282615/94‑1 (MQ=60)
CAGCGTCTCCCACATCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCCCCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTG < SRR4302536.1437053/94‑1 (MQ=60)
AGCGTCGCCCACATCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGT > SRR4302536.110786/1‑94 (MQ=60)
GCGTCGCCCACATCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTA < SRR4302536.5764855/94‑1 (MQ=60)
GCGTCGCCCACATCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTA < SRR4302536.6438183/94‑1 (MQ=60)
GCGTCGCCCACATCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTA < SRR4302536.1854025/94‑1 (MQ=60)
GCGTCGCCCACATCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGAGCCCAGTTCGTTGTA > SRR4302536.6532740/1‑94 (MQ=60)
CGTCGCCCACATCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAA < SRR4302536.6479886/94‑1 (MQ=60)
GTCGCCCACATCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAA < SRR4302536.6656655/94‑1 (MQ=60)
GTCGCCCACATCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAA < SRR4302536.3725481/94‑1 (MQ=60)
GTCGCCCACATCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAA > SRR4302536.989196/1‑94 (MQ=60)
TCGCCCACATCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAG > SRR4302536.5820550/1‑94 (MQ=60)
TCGCCCACATCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAG > SRR4302536.2385110/1‑94 (MQ=60)
GCCCACATCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAA > SRR4302536.5837992/1‑94 (MQ=60)
GCCCACATCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAA < SRR4302536.3596945/94‑1 (MQ=60)
GCCCACATCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAA > SRR4302536.4535422/1‑94 (MQ=60)
CCCACATCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAAT > SRR4302536.5795519/1‑94 (MQ=60)
CCCACATCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAAT < SRR4302536.2893657/94‑1 (MQ=60)
CCCACATCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAAT < SRR4302536.6739567/94‑1 (MQ=60)
acacgacgctcttccgatctctaaggtAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGaacttccgcgaaatgg < SRR4302536.2135811/67‑17 (MQ=60)
CCACATCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATG > SRR4302536.4240353/1‑94 (MQ=60)
CCACATCAGCATGTTATTGCCGTCAGCAAAGCGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGACCAGATCGTTGTAAAGCATG > SRR4302536.3311540/1‑94 (MQ=60)
CACATCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGA < SRR4302536.395226/94‑1 (MQ=60)
CATCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAAC < SRR4302536.1489543/94‑1 (MQ=60)
ATCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACA < SRR4302536.3698087/94‑1 (MQ=60)
ATCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTGCAGGGCGCCCAGTTCGTTGTAAAGAATGAACA < SRR4302536.466678/94‑1 (MQ=60)
CAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGT < SRR4302536.1872950/94‑1 (MQ=60)
CAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGT < SRR4302536.6646307/94‑1 (MQ=60)
GCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGC < SRR4302536.2249199/94‑1 (MQ=60)
CATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCG > SRR4302536.1322790/1‑94 (MQ=60)
CATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCG > SRR4302536.3615224/1‑94 (MQ=60)
CATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGCTCCACCATTTCGCGGAAGTTCATGGCGCCCAGCTCGTTGTAAAGAATGAACAGTGCG > SRR4302536.6450896/1‑94 (MQ=60)
ATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGA < SRR4302536.2861456/94‑1 (MQ=60)
TGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAA > SRR4302536.1812044/1‑94 (MQ=60)
GTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAA < SRR4302536.2906797/94‑1 (MQ=60)
TTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAG < SRR4302536.5784122/94‑1 (MQ=60)
TTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAG < SRR4302536.4001626/94‑1 (MQ=60)
TTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAG < SRR4302536.6581419/94‑1 (MQ=60)
TATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGC > SRR4302536.953738/1‑94 (MQ=60)
TATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGC > SRR4302536.1442953/1‑94 (MQ=60)
TATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGC > SRR4302536.6181402/1‑94 (MQ=60)
ATTGCAGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCG < SRR4302536.4278201/94‑1 (MQ=60)
TTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGACAGCGA > SRR4302536.6849292/1‑94 (MQ=60)
TTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTACGAAAGCGA > SRR4302536.6849291/1‑94 (MQ=60)
GCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGG < SRR4302536.1151229/94‑1 (MQ=60)
CCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGACGA < SRR4302536.4331636/94‑1 (MQ=60)
CGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAA < SRR4302536.3827498/94‑1 (MQ=60)
GTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAAC < SRR4302536.389871/94‑1 (MQ=60)
TCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACA < SRR4302536.553480/94‑1 (MQ=60)
TCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACA < SRR4302536.4362509/94‑1 (MQ=60)
CAGCAAAGTGCGCGGGTGCCAGTCCCGCCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACAC < SRR4302536.4678372/94‑1 (MQ=60)
AGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACG < SRR4302536.1437657/94‑1 (MQ=60)
CAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGATCAGGGCACCCAGCTCGTTGTAAAGCATGAACAGTGCGAAAGCGAGGAACACGTC > SRR4302536.1425113/1‑94 (MQ=60)
AAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCA < SRR4302536.43735/94‑1 (MQ=60)
AAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGTGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCAC > SRR4302536.1556492/1‑94 (MQ=60)
AAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCAC < SRR4302536.3252869/94‑1 (MQ=60)
AGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACC > SRR4302536.1719659/1‑94 (MQ=60)
AGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACC < SRR4302536.5467403/94‑1 (MQ=60)
AGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACC < SRR4302536.3132042/94‑1 (MQ=60)
AGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACC > SRR4302536.6022997/1‑94 (MQ=60)
GTGCGCTGTGGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCC < SRR4302536.1928562/94‑1 (MQ=60)
TGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCA > SRR4302536.5089091/1‑94 (MQ=60)
GCTCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCTC < SRR4302536.5427887/94‑1 (MQ=60)
GCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGCTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACAC > SRR4302536.652415/1‑94 (MQ=60)
TGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGG > SRR4302536.3688871/1‑94 (MQ=60)
GTGCCAGTTCGAGCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGT < SRR4302536.1720995/94‑1 (MQ=60)
GTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGT > SRR4302536.1216676/1‑94 (MQ=60)
TGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAATACGTCACCCACACGGGTC > SRR4302536.6880149/1‑94 (MQ=60)
GCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCA > SRR4302536.6498331/1‑94 (MQ=60)
GCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCA < SRR4302536.6215541/94‑1 (MQ=60)
CCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTCGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCAC > SRR4302536.4192905/1‑94 (MQ=60)
AGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGA > SRR4302536.3730485/1‑94 (MQ=60)
TTCCACCATTTCGCAGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACG < SRR4302536.6784776/94‑1 (MQ=60)
TCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGA > SRR4302536.2797852/1‑94 (MQ=60)
TCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGA > SRR4302536.5568459/1‑94 (MQ=60)
TCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGA > SRR4302536.3571346/1‑94 (MQ=60)
TCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGAA > SRR4302536.2420846/1‑94 (MQ=60)
CCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGAA > SRR4302536.4681762/1‑94 (MQ=60)
CCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGAA < SRR4302536.3509017/94‑1 (MQ=60)
CCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGACACGACGAA > SRR4302536.6759668/1‑94 (MQ=60)
CACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGAAC > SRR4302536.598533/1‑94 (MQ=60)
ACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGAACG > SRR4302536.557641/1‑94 (MQ=60)
CCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGCACGC > SRR4302536.278163/1‑94 (MQ=60)
CATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGAACGCT > SRR4302536.3256320/1‑94 (MQ=60)
CATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGAACGCT < SRR4302536.6338171/94‑1 (MQ=60)
CATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGAACGCT < SRR4302536.3174368/94‑1 (MQ=60)
ATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGAACGCTT < SRR4302536.4615493/94‑1 (MQ=60)
ATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGAACGCTT > SRR4302536.648082/1‑94 (MQ=60)
ATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGAACGCTT > SRR4302536.2765609/1‑94 (MQ=60)
ATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGAACGCTT < SRR4302536.5357146/94‑1 (MQ=60)
TTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCTAGTAACACGTCACCCACACGGGTCACGACGAACGCTTT < SRR4302536.6659926/94‑1 (MQ=60)
TTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGAACGCTTTC < SRR4302536.5441020/94‑1 (MQ=60)
TTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGAACGCTTTC < SRR4302536.6042496/94‑1 (MQ=60)
TCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGAACGCTTTCA < SRR4302536.4120417/94‑1 (MQ=60)
GCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGAACGCTTTCATT < SRR4302536.6359022/94‑1 (MQ=60)
GCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGAACGCTTTCATT < SRR4302536.5245761/94‑1 (MQ=60)
GAGGAAGGTCAGGGCGCCCAGTTCGTTGTAAAGAATCAGCAGTGCGAAAGCGAGGACCACGTCCCCCACACGGGTCACGACGAACGCTTTCATT < SRR4302536.305028/94‑1 (MQ=60)
CGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGAACGCTTTCATTG < SRR4302536.6122654/94‑1 (MQ=60)
GGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGAACGCTTTCATTGC > SRR4302536.1894236/1‑94 (MQ=60)
GGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGAACGCTTTCATTGC > SRR4302536.3415943/1‑94 (MQ=60)
GGAAGTTCAGGGCGCCCAGGTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACCGGCCACGACGAACGCTTTCATTGC > SRR4302536.1595334/1‑94 (MQ=60)
GGAAGTTCAGGGCGCCAAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGAAAGCATTTATTGC > SRR4302536.5325192/1‑94 (MQ=60)
GAAGTTCAGGTCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGAACGCTTTCATTGCC < SRR4302536.4137708/94‑1 (MQ=60)
GAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGAACGCTTTCATTGCC < SRR4302536.1219241/94‑1 (MQ=60)
GAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGAACGCTTTCATTGCC > SRR4302536.863335/1‑94 (MQ=60)
GAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGAACGCTTTCATTGCC > SRR4302536.311738/1‑94 (MQ=60)
GAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGAACGCTTTCATTGCC < SRR4302536.5391919/94‑1 (MQ=60)
GAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGAACGCTTTCATTGCC > SRR4302536.925336/1‑94 (MQ=60)
AGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGAACGCTTTCATTGCCGC > SRR4302536.6589960/1‑94 (MQ=60)
AGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGAACGCTTTCATTGCCGC > SRR4302536.2336552/1‑94 (MQ=60)
AGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGAACGCTTTCATTGCCGC > SRR4302536.5197887/1‑94 (MQ=60)
GTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGAACGCTTTCATTGCCGCT < SRR4302536.3322413/94‑1 (MQ=60)
GTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGAACGCTTTCATTGCCGCT < SRR4302536.5081130/94‑1 (MQ=60)
GTGCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGAACGCTTTCATTGCCGCT < SRR4302536.238061/94‑1 (MQ=60)
TTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGAACGCTTTCATTGCCGCTG > SRR4302536.701827/1‑94 (MQ=60)
TCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGAACGCTTTCATTGCCGCTGC < SRR4302536.5691041/94‑1 (MQ=60)
CAGGGCGCCGAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGAACGCTTTCATTGCCGCTGCG < SRR4302536.103694/94‑1 (MQ=60)
CAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGAACGCTTTCATTGCCGCTGCG > SRR4302536.1214591/1‑94 (MQ=60)
CAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGAACGCTTTCATTGCCGCTGCG > SRR4302536.6213939/1‑94 (MQ=60)
CAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGAACGCTTTCATTGCCGCTGCG < SRR4302536.3597526/94‑1 (MQ=60)
CAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGAACGCTTTCATTGCCGCTGCG < SRR4302536.2520007/94‑1 (MQ=60)
AGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGAACGCTTTCATTGCCGCTGCGC > SRR4302536.6296672/1‑94 (MQ=60)
AGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGGCACGACGAACGCTTTCATTGgcggtccgc > SRR4302536.2493471/1‑85 (MQ=60)
GCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGAACGCTTTCATTGCCGCTGCGCCAT < SRR4302536.648871/94‑1 (MQ=60)
GCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGAACGCTTTCATTGCCGCTGCGCCAT < SRR4302536.1150776/94‑1 (MQ=60)
CGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGAACGCTTTCATTGCCGCTGCGCCATT > SRR4302536.143359/1‑94 (MQ=60)
|
CGCCCAGCAGCATCAGCGTCGCCCACATCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGTGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGAACGCTTTCATTGCCGCTGCGCCATT > NC_000913/2392394‑2392580
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
