Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1475	266.7	13469680	98.2%	13227225	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,406,831	A→G	intergenic (+33/‑51)	b2290 → / → b2291	putative aminotransferase/putative alpha helix protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,406,831	0	A	G	100.0%	586.5 / NA	183	intergenic (+33/‑51)	b2290/b2291	putative aminotransferase/putative alpha helix protein
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (113/70); total (113/70)

Only 100 of 241 total aligned reads displayed.

TATCGAGCTGTCTTTGAGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAGAGCCATTTTTTTGCCCATCTCTCCCGCCTG  >  NC_000913/2406741‑2406920

tatCGAGCTGTCTTTGAGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCggcggc                                                                                         >  2:3304944/1‑93 (MQ=255)

      gCTGTCTTTGAGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATc                                                                                   >  2:5516532/1‑93 (MQ=255)

      gCTGTCTTTGAGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATc                                                                                   >  1:308175/1‑93 (MQ=255)

       cTGTCTTTGAGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATcc                                                                                  <  1:1128090/93‑1 (MQ=255)

       cTGTCTTTGAGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATcc                                                                                  >  1:4739735/1‑93 (MQ=255)

       cTGTCTTTGAGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATcc                                                                                  <  2:2162183/93‑1 (MQ=255)

       cTGTCTTTGAGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATcc                                                                                  >  1:1311060/1‑93 (MQ=255)

        tGTCTTTGAGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATccc                                                                                 >  2:3059066/1‑93 (MQ=255)

          tCTTTGAGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGc                                                                               >  1:5373528/1‑93 (MQ=255)

           cTTTGAGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGcc                                                                              <  2:5225302/93‑1 (MQ=255)

           cTTTGAGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCAGCCGGCGGCGTGATCCCGcc                                                                              <  1:6544326/93‑1 (MQ=255)

            tttGAGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCca                                                                             >  2:1421581/1‑93 (MQ=255)

             ttGAGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCcac                                                                            >  1:4543982/1‑93 (MQ=255)

                aGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAAt                                                                         <  1:1435899/93‑1 (MQ=255)

                 gCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTCTCCCGCCACAAta                                                                        >  1:5452852/1‑92 (MQ=255)

                   aaGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGAc                                                                      <  2:4364325/93‑1 (MQ=255)

                    aGTTCGCGCTTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGAcc                                                                     <  1:5580457/93‑1 (MQ=255)

                    aGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGAcc                                                                     <  2:4506237/93‑1 (MQ=255)

                     gTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCt                                                                    >  2:3510686/1‑93 (MQ=255)

                        cgcgcgTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCtgat                                                                 >  1:2137993/1‑93 (MQ=255)

                         gcgcgTTTCCTTTCTGGTTATCATCAGTTGTATTCTTAATTTCCCTGCCGGAGATTGCATCCGGCGGCCTTACCCCGCCACAATGACCtgatg                                                                <  2:2345468/93‑1 (MQ=255)

                         gcgcgTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCtgata                                                                >  2:4064910/1‑92 (MQ=255)

                         gcgcgTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGAGTTATCCCCCCACAATGACCtgatg                                                                >  1:2053406/1‑93 (MQ=255)

                          cgggTTTCCTTTCTGGTTATCATCAGCTGTAATCTTATTTTCACTGCCGGAGATTGCATCCGGCGGCTTTATCCCGCCACAATGACCtgatga                                                               <  2:1315475/90‑1 (MQ=255)

                          cgcgTTTCCTTTCTGGTTATCATCAGCTGTAATTTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCtgatga                                                               <  2:2432015/93‑1 (MQ=255)

                                tCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGtcat                                                         >  1:179711/1‑93 (MQ=255)

                                 ccTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGtcatc                                                        >  2:2651446/1‑93 (MQ=255)

                                  cTTTCTGTTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGtcatca                                                       <  2:4382638/93‑1 (MQ=255)

                                  cTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGtcatca                                                       >  1:3342793/1‑93 (MQ=255)

                                  cTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGtcatca                                                       >  1:6082232/1‑93 (MQ=255)

                                    ttCTGGTTCTCATCAGCTGTATTCTAAATTTCACTGCCGGAGATGGCATCCGGCGACGTTATCCCGCCACAATGACCTGATGATGTCATCATa                                                     <  2:6385107/93‑1 (MQ=255)

                                    ttCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATa                                                     <  1:4411992/93‑1 (MQ=255)

                                    ttCTGGTTATCATCAGCTGTAATCTTAATTTCACTGACGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCataata                                                     >  1:1897950/1‑93 (MQ=255)

                                     tCTGGTTATCAAAAGCTGTAATCTTAATTTCACTGCCGAAGGTTGCATCCGCCGGCTTCACCCCGCCACAATGCCCTGATGATGTCATCATAc                                                    <  2:5862798/93‑1 (MQ=255)

                                        ggTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTa                                                 >  2:6187116/1‑93 (MQ=255)

                                        ggTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTa                                                 >  2:4945720/1‑93 (MQ=255)

                                         gTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTaa                                                >  1:4994630/1‑93 (MQ=255)

                                         gTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTaa                                                <  1:5537926/93‑1 (MQ=255)

                                         gTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTaa                                                >  1:5737098/1‑93 (MQ=255)

                                         gTTATCATCACCTGTACTCTTAATTTCCCTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTaa                                                <  2:3993814/93‑1 (MQ=255)

                                           tATCATCAGCTGTAATCTTAATTTCACGGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAgg                                              <  1:1047498/93‑1 (MQ=255)

                                             tcatcaGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTc                                            >  2:1351000/1‑93 (MQ=255)

                                             tcatcaGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTc                                            >  1:2905005/1‑93 (MQ=255)

                                             tcatcaGCTGTAATCTTAATTTCACTGCCGGAGATTGCACCCGGCGGCGTTACCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTc                                            <  1:3210654/93‑1 (MQ=255)

                                              catcaGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCa                                           >  2:525573/1‑93 (MQ=255)

                                               atcaGCTGTAATTTTATTTTCACTGCCGGAGTTTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCAc                                          <  2:2975828/93‑1 (MQ=255)

                                               atcaGCTATAATTTTAATTTCACTGCCGGAGATTGCATCCGGGGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCAc                                          <  2:605382/93‑1 (MQ=255)

                                                tcaGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCGGGCGGCGTTACCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACt                                         <  1:6653393/93‑1 (MQ=255)

                                                tcaGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACt                                         >  2:5688300/1‑93 (MQ=255)

                                                 caGCTGTAATCTTAATTTCACTGCTGGAGATTGCATCCGGCGGCTTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTa                                        <  1:6369270/93‑1 (MQ=255)

                                                 caGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTa                                        <  1:2029350/93‑1 (MQ=255)

                                                  accTGTAATCTAAATTTCACGGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTAt                                       <  1:4811242/91‑1 (MQ=255)

                                                  aGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTAt                                       >  1:5058815/1‑93 (MQ=255)

                                                  aGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTAt                                       >  1:3051551/1‑93 (MQ=255)

                                                  aGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTAt                                       >  1:2717499/1‑93 (MQ=255)

                                                   gCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATg                                      >  2:4771602/1‑93 (MQ=255)

                                                   gCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATg                                      >  2:6534862/1‑93 (MQ=255)

                                                   gCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATg                                      <  1:5233150/93‑1 (MQ=255)

                                                     tGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGaa                                    >  2:6500314/1‑93 (MQ=255)

                                                       tAATCTTATTTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAAc                                  <  2:2092712/93‑1 (MQ=255)

                                                       tAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAAc                                  >  2:5494432/1‑93 (MQ=255)

                                                       tAATCTTAATTTCACTGCCGGAGATTGCACCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAAc                                  <  2:3769927/93‑1 (MQ=255)

                                                       tAATCTAAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAAc                                  <  2:1224585/93‑1 (MQ=255)

                                                        aaTCTTAATTTCACTGCCGGAGATTCCACCCGGCGGCGTAATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACa                                 <  2:6240864/93‑1 (MQ=255)

                                                           tttAATTTCACTGCCGGAGATTGAAGCCGGCGGCGTTACCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACagag                              <  1:2271205/92‑1 (MQ=255)

                                                           cTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTACCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACagag                              <  1:6147823/93‑1 (MQ=255)

                                                            ttAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAGAGc                             >  1:1520053/1‑93 (MQ=255)

                                                            ttAATTCCACTGCGGGAGTTTCCATCGGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAGAGc                             <  2:1575943/93‑1 (MQ=255)

                                                               aTTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAGAGCCAt                          >  1:3875775/1‑93 (MQ=255)

                                                               aTTTCACTGCCGGAGATTCCACCCGGCGGCTTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAGAGCCAt                          <  1:4008157/93‑1 (MQ=255)

                                                                tttCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAGAGCCAtt                         >  2:2552912/1‑93 (MQ=255)

                                                                 ttCACTGCCGGAGATTGCATCGGGCGGCTTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAGAGCCAttt                        <  2:3825174/93‑1 (MQ=255)

                                                                 ttCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAGAGCCAttt                        <  1:6251681/93‑1 (MQ=255)

                                                                  tCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAGAGCCAtttt                       >  1:4231342/1‑93 (MQ=255)

                                                                    cttGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAGAGCCAtttttt                     <  1:2691385/91‑1 (MQ=255)

                                                                    aCTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAGAGCCAtttttt                     >  1:4961316/1‑93 (MQ=255)

                                                                     cTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAGAGCCAttttttt                    <  1:4133221/93‑1 (MQ=255)

                                                                     cTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAGAGCCAttttttt                    >  2:679042/1‑93 (MQ=255)

                                                                      tGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAGAGCCATTTTTTTg                   >  1:4296801/1‑93 (MQ=255)

                                                                      ggCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAGAGCCATTTTTTTg                   <  2:3264167/92‑1 (MQ=255)

                                                                        ccGGAGATTGCCTCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAGAGCCATTTTTTTGcc                 <  2:5326970/93‑1 (MQ=255)

                                                                        ccGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAGAGCCATTTTTTTGcc                 >  1:247483/1‑93 (MQ=255)

                                                                         cGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAGAGCCATTTTTTTGccc                >  2:932653/1‑93 (MQ=255)

                                                                          ggAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAGAGCCATTTTTTTGCCCa               <  1:5943449/93‑1 (MQ=255)

                                                                           gcgaTTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAGAGCCATTTTTTTGCCCAt              >  1:865469/3‑93 (MQ=255)

                                                                           gagaTTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAGAGCCATTTTTTTGCCCAt              >  2:4642752/1‑93 (MQ=255)

                                                                           gagaTTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAGAGCCATTTTTTTGCCCAt              >  2:81709/1‑93 (MQ=255)

                                                                            agaTTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAGAGCCATTTTTTTGCCCAtc             <  1:1662683/93‑1 (MQ=255)

                                                                            agaTTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAGAGCCATTTTTTTGCCCAtc             >  2:1077067/1‑93 (MQ=255)

                                                                            agaTTCCATCCGGCGGCGTTACCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAGAGCCATTTTTTTGCCCAtc             <  1:5904804/93‑1 (MQ=255)

                                                                             gaTTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAGAGCCATTTTTTTGCCCAtct            >  1:3401785/1‑93 (MQ=255)

                                                                              agtGCATCCGGCGGCGTTACCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAGAGCCATTTTTTTGCCCAtctc           <  1:6700659/91‑1 (MQ=255)

                                                                              aTTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAGAGCCATTTTTTTGCCCAtctc           <  2:1824997/93‑1 (MQ=255)

                                                                              aTTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAGAGCCATTTTTTTGCCCAtctc           >  2:4179398/1‑93 (MQ=255)

                                                                               ttGCATCCGGCGGCCTTACCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAGAGCCATTTTTTTGCCCAtctct          <  2:6695064/93‑1 (MQ=255)

                                                                                   ccccGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAGAGCCATTTTTTTGCCCATCTCTCCCg      <  1:359046/91‑1 (MQ=255)

                                                                                    tCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAGAGCCATTTTTTTGCCCATCTCTCCCGc     >  1:4146871/1‑93 (MQ=255)

                                                                                    cccGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAGAGCCATTTTTTTGCCCATCTCTCCCGc     <  2:3564673/92‑1 (MQ=255)

                                                                                      cggcggCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAGAGCCATTTTTTTGCCCATCTCTCCCGCCt   >  1:3010700/1‑93 (MQ=255)

                                                                                       ggcggcGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAGAGCCATTTTTTTGCCCATCTCTCCCGCCTg  >  2:2258198/1‑93 (MQ=255)

TATCGAGCTGTCTTTGAGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAGAGCCATTTTTTTGCCCATCTCTCCCGCCTG  >  NC_000913/2406741‑2406920

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 18 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

TGATATCGAGCTGTCTTTGAGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAGAGCCATTTTTTTGCCCATCTCTCCCGCCTGAAAC  >  NC_000913/2406738‑2406924

TGATATCGAGCTGTCTTTGAGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCG                                                                                               >  SRR4302536.1254565/1‑94 (MQ=60)

   TATCGAGCTGTCTTTGAGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCG                                                                                            <  SRR4302536.2109242/94‑1 (MQ=60)

        AGCTGTCTTTGAGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATC                                                                                       >  SRR4302536.316362/1‑94 (MQ=60)

         GCTGTCTTTGAGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCC                                                                                      >  SRR4302536.1350181/1‑94 (MQ=60)

         GCTGTCTTTGAGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCC                                                                                      >  SRR4302536.4882350/1‑94 (MQ=60)

          CTGTCTTTGAGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCC                                                                                     <  SRR4302536.1162001/94‑1 (MQ=60)

            GTCTTTGAGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGC                                                                                   >  SRR4302536.5533842/1‑94 (MQ=60)

              CTTTGAGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCA                                                                                 <  SRR4302536.5143240/94‑1 (MQ=60)

              CTTTGAGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCA                                                                                 >  SRR4302536.5096991/1‑94 (MQ=60)

              CTTTGAGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCA                                                                                 >  SRR4302536.3112209/1‑94 (MQ=60)

              CTTTGAGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCAGCCGGCGGCGTGATCCCGCCA                                                                                 <  SRR4302536.6739215/94‑1 (MQ=60)

               TTTGAGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCAC                                                                                >  SRR4302536.4680246/1‑94 (MQ=60)

                   AGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTCTCCCGCCACAATA                                                                            >  SRR4302536.5615937/1‑94 (MQ=60)

                   AGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATG                                                                            <  SRR4302536.1478501/94‑1 (MQ=60)

                      AAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACC                                                                         >  SRR4302536.1597585/1‑94 (MQ=60)

                       AGTTCGCGCTTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCT                                                                        <  SRR4302536.5746525/94‑1 (MQ=60)

                       AGTTCGCGCGTTTCCTTTCTGTTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCT                                                                        <  SRR4302536.3906011/94‑1 (MQ=60)

                        GTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTG                                                                       <  SRR4302536.4341732/94‑1 (MQ=60)

                         TTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGA                                                                      <  SRR4302536.4342335/94‑1 (MQ=60)

                          TCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGAT                                                                     <  SRR4302536.18824/94‑1 (MQ=60)

                          TCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGAT                                                                     >  SRR4302536.2202182/1‑94 (MQ=60)

                          TCCCGCGTTTCTTTTCGGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTACATCCGGCGGCGTTATCCCGCCACAATGACCTGAT                                                                     <  SRR4302536.1213109/94‑1 (MQ=60)

                           CGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATG                                                                    >  SRR4302536.1483718/1‑94 (MQ=60)

                           CGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGACACAATGACCTCATG                                                                    >  SRR4302536.1575619/1‑94 (MQ=60)

                           CGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGAGTTATCCCCCCACAATGACCTGATG                                                                    >  SRR4302536.2115253/1‑94 (MQ=60)

                            ccgctTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGA                                                                   <  SRR4302536.6134311/89‑1 (MQ=60)

                            GCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGA                                                                   <  SRR4302536.3388985/94‑1 (MQ=60)

                            GCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGA                                                                   <  SRR4302536.5713149/94‑1 (MQ=60)

                             CGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGAT                                                                  <  SRR4302536.653484/94‑1 (MQ=60)

                             CGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGAT                                                                  >  SRR4302536.6208118/1‑94 (MQ=60)

                              GCGTTTCTTTTCTGTTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATG                                                                 <  SRR4302536.4238549/94‑1 (MQ=60)

                               CGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGT                                                                >  SRR4302536.3512555/1‑94 (MQ=60)

                                GTTTCCTTTCTGGTTATCATCAGCTGTAGTCTTAAGTTCACTGCCCGAGGTTGCATGCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTC                                                               >  SRR4302536.5987309/1‑94 (MQ=60)

                                GTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTC                                                               >  SRR4302536.2475740/1‑94 (MQ=60)

                                GTTGCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTC                                                               <  SRR4302536.3460263/94‑1 (MQ=60)

                                  TTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCAT                                                             >  SRR4302536.184466/1‑94 (MQ=60)

                                    CCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCA                                                           >  SRR4302536.3441836/1‑94 (MQ=60)

                                    CCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCA                                                           >  SRR4302536.2940000/1‑94 (MQ=60)

                                    CCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCA                                                           >  SRR4302536.6263652/1‑94 (MQ=60)

                                     CTTTCTGTTTATCATCAGCTGTAATTTTATTTTCACTGCGGGAGATTGCAGCCGTCGGCTTTTTCCCGCCACAATGACCTGATGATGTCATCAT                                                          <  SRR4302536.5599084/94‑1 (MQ=53)

                                     CTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATTAT                                                          >  SRR4302536.5722665/1‑94 (MQ=60)

                                     CTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCAT                                                          >  SRR4302536.6847298/1‑94 (MQ=60)

                                     CTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCAT                                                          >  SRR4302536.1018339/1‑94 (MQ=60)

                                      tttctgataatcacatgttaaAATCTTAATTTCACTGCCGGAGATTGCAGCCGGCGTATTTATCCCGCCACAATGACCTGATGATGTCATCATA                                                         <  SRR4302536.2098611/73‑1 (MQ=60)

                                      TTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGACGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATAATA                                                         >  SRR4302536.1955108/1‑94 (MQ=60)

                                      TTTCTGGTTATCATCAGCTGTAATCTTAATTGCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATA                                                         <  SRR4302536.6366632/94‑1 (MQ=60)

                                       TTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATAC                                                        <  SRR4302536.4544011/94‑1 (MQ=60)

                                        TCTGTTTATCATGAGCTTTAATCTTAATTCCCCTGCCGGAGATTGCATCCGGCGGCGTAACCCCGCCACAATGACCTGATGATGTCATCATACG                                                       <  SRR4302536.2771329/94‑1 (MQ=60)

                                          TGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTA                                                     >  SRR4302536.6278539/1‑94 (MQ=60)

                                           GGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAA                                                    >  SRR4302536.5144541/1‑94 (MQ=60)

                                           GGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAA                                                    >  SRR4302536.5907751/1‑94 (MQ=60)

                                            GTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAG                                                   <  SRR4302536.5702975/94‑1 (MQ=60)

                                            GTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAG                                                   <  SRR4302536.730896/94‑1 (MQ=60)

                                              TATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGT                                                 >  SRR4302536.1410049/1‑94 (MQ=60)

                                              TATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGT                                                 >  SRR4302536.2783531/1‑94 (MQ=60)

                                              TATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGT                                                 >  SRR4302536.2759269/1‑94 (MQ=60)

                                              TATCATCAGCTGTAATCTTAATTTCACGGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGT                                                 <  SRR4302536.1078675/94‑1 (MQ=60)

                                               ATCATCAGCTTTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTC                                                <  SRR4302536.214534/94‑1 (MQ=60)

                                               ATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTC                                                >  SRR4302536.2990744/1‑94 (MQ=60)

                                                TCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCACCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCA                                               <  SRR4302536.2653702/94‑1 (MQ=60)

                                                TCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCACCCGGCGGCGTTACCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCA                                               <  SRR4302536.3304827/94‑1 (MQ=60)

                                                 CATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCAC                                              >  SRR4302536.2073020/1‑94 (MQ=60)

                                                 CATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCAC                                              <  SRR4302536.4532112/94‑1 (MQ=60)

                                                  ATCAGCTTTAATTTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACT                                             <  SRR4302536.4388777/94‑1 (MQ=60)

                                                  ATCAGCTGTAATCTTATTTTCACTGCCGGAGATTGCATCCGGCGGCTTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACT                                             <  SRR4302536.5841457/94‑1 (MQ=60)

                                                  ATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCTTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACT                                             <  SRR4302536.512809/94‑1 (MQ=60)

                                                  ATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACT                                             <  SRR4302536.4135289/94‑1 (MQ=60)

                                                  ATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACT                                             >  SRR4302536.3257328/1‑94 (MQ=60)

                                                   TCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCGGGCGGCGTTACCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTA                                            <  SRR4302536.6851157/94‑1 (MQ=60)

                                                    CAGCTGTAATCTTAATTTCACTGCTGGAGATTGCATCCGGCGGCTTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTAT                                           <  SRR4302536.6559073/94‑1 (MQ=60)

                                                    CAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTAT                                           >  SRR4302536.5210350/1‑94 (MQ=60)

                                                    CAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTAT                                           <  SRR4302536.2090448/94‑1 (MQ=60)

                                                    CAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTAT                                           >  SRR4302536.2798547/1‑94 (MQ=60)

                                                    CAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTAT                                           >  SRR4302536.3141173/1‑94 (MQ=60)

                                                     AGCTGTAATATTAATTTCACAGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATG                                          >  SRR4302536.6766670/1‑94 (MQ=60)

                                                     ACCTGTAATCTAAATTTCACGGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATG                                          <  SRR4302536.4956024/94‑1 (MQ=60)

                                                      GCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGA                                         <  SRR4302536.5389079/94‑1 (MQ=60)

                                                       CTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAA                                        >  SRR4302536.2280928/1‑94 (MQ=60)

                                                        TGTATTCTTAATTCCACTGCCGGAGTTTCCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAA                                       <  SRR4302536.3557117/94‑1 (MQ=60)

                                                        TGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAA                                       >  SRR4302536.4942141/1‑94 (MQ=60)

                                                        TGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGAGGCGTTATCCCGCCACAATGACCTGATGATGTACTCATACGTAAGGTCACTATGAAA                                       >  SRR4302536.464238/1‑94 (MQ=60)

                                                           atttttatTTTCACTGCAGGAGATTGCATCCGGCGGTGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAG                                    <  SRR4302536.1089465/86‑1 (MQ=60)

                                                           AATCTTATTTTCACTGCCGGAGATTGCATCCGGCGGCGTTACCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAG                                    <  SRR4302536.5605401/94‑1 (MQ=60)

                                                           AATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTACCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAG                                    <  SRR4302536.1444175/94‑1 (MQ=60)

                                                            ATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTATGGTCACTATGAAACAGA                                   >  SRR4302536.5277565/1‑94 (MQ=60)

                                                             TCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAGAG                                  <  SRR4302536.5909378/94‑1 (MQ=60)

                                                              TTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAGAGC                                 <  SRR4302536.4052465/94‑1 (MQ=60)

                                                              TTTAATTTCACTGCCGGAGATTGAAGCCGGCGGCGTTACCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAGAGC                                 <  SRR4302536.2340005/94‑1 (MQ=60)

                                                              CTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAGAGC                                 >  SRR4302536.1564789/1‑94 (MQ=60)

                                                              CTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAGAGC                                 >  SRR4302536.2997917/1‑94 (MQ=60)

                                                              CTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAGAGC                                 >  SRR4302536.6879601/1‑94 (MQ=60)

                                                              CTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAGAGC                                 >  SRR4302536.3169429/1‑94 (MQ=60)

                                                              CTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTACCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAGAGC                                 <  SRR4302536.6330980/94‑1 (MQ=60)

                                                               TTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAGAGCC                                >  SRR4302536.4263245/1‑94 (MQ=60)

                                                                TAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAGAGCCA                               >  SRR4302536.6113290/1‑94 (MQ=60)

                                                                 aattcctcgGCCGGAGATTGCATCCGGCGGCGTTCTCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAGAGCCAT                              <  SRR4302536.3549682/85‑1 (MQ=60)

                                                                 AATTTCACTGCGGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAGAGCCAT                              <  SRR4302536.5179467/94‑1 (MQ=60)

                                                                 AATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAGAGCCAT                              >  SRR4302536.3991089/1‑94 (MQ=60)

                                                                  ATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAGAGCCATT                             >  SRR4302536.2807398/1‑94 (MQ=60)

                                                                  ATTTCACTGCCGGAGATTCCACCCGGCGGCTTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAGAGCCATT                             <  SRR4302536.4127096/94‑1 (MQ=60)

                                                                  ATTCCCCTGCCGGAGATTGCATCGGGCGGCTTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAGAGCCATT                             <  SRR4302536.5634139/94‑1 (MQ=60)

                                                                    TTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAGAGCCATTTT                           >  SRR4302536.4357254/1‑94 (MQ=60)

                                                                    TTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAGAGCCATTTT                           <  SRR4302536.6437931/94‑1 (MQ=60)

                                                                    TCCACTGCCGGAGATTGCATCCGGCGGCGTTACCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAGAGCCATTTT                           <  SRR4302536.475871/94‑1 (MQ=60)

                                                                      CACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAGAGCCATTTTTT                         >  SRR4302536.5110365/1‑94 (MQ=60)

                                                                       ctTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAGAGCCATTTTTTT                        <  SRR4302536.2771730/92‑1 (MQ=60)

                                                                       ACTGCCGGAGATTGCACCCGGCGGCGTTACCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAGAGCCATTTTTTT                        <  SRR4302536.5474597/94‑1 (MQ=60)

                                                                        CTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAGAGCCATTTTTTTG                       >  SRR4302536.2147070/1‑94 (MQ=60)

                                                                        CTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAGAGCCATTTTTTTG                       <  SRR4302536.4255753/94‑1 (MQ=60)

                                                                        CTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAGAGCCATTTTTTTG                       >  SRR4302536.4425222/1‑94 (MQ=60)

                                                                         TGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAGAGCCATTTTTTTGC                      >  SRR4302536.3144191/1‑94 (MQ=60)

                                                                          GCCGGATATTGCACCCTGCGGCGTTACCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAGAGCCATTTTTTTGCC                     <  SRR4302536.3401205/94‑1 (MQ=60)

                                                                          GCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAGAGCCATTTTTTTGCC                     >  SRR4302536.254084/1‑94 (MQ=60)

                                                                            CGGAGATTCCACCGGGCGGCGTTACCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAGAGCCATTTTTTTGCCCA                   <  SRR4302536.6590000/94‑1 (MQ=60)

                                                                             GGCGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAGAGCCATTTTTTTGCCCAT                  >  SRR4302536.890912/1‑94 (MQ=60)

                                                                             GGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAGAGCCATTTTTTTGCCCAT                  <  SRR4302536.6120525/94‑1 (MQ=60)

                                                                              GAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAGAGCCATTTTTTTGCCCATC                 >  SRR4302536.6495149/1‑94 (MQ=60)

                                                                               attTTGCATCGGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAGAGCCATTTTTTTGCCCATCT                <  SRR4302536.198610/91‑1 (MQ=60)

                                                                               AGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAGAGCCATTTTTTTGCCCATCT                <  SRR4302536.1710937/94‑1 (MQ=60)

                                                                               AGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAGAGCCATTTTTTTGCCCATCT                >  SRR4302536.3502955/1‑94 (MQ=60)

                                                                               AGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAGAGCCATTTTTTTGCCCATCT                >  SRR4302536.5510493/1‑94 (MQ=60)

                                                                               AGATTCCATCCGGCGGCGTTACCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAGAGCCATTTTTTTGCCCATCT                <  SRR4302536.6080644/94‑1 (MQ=60)

                                                                                 AGTGCATCCGGCGGCGTTACCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAGAGCCATTTTTTTGCCCATCTCT              <  SRR4302536.6899682/94‑1 (MQ=60)

                                                                                  TTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAGAGCCATTTTTTTGCCCATCTCTC             >  SRR4302536.5648738/1‑94 (MQ=60)

                                                                                    GCATCCGGCGGCTTTACCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAGAGCCATTTTTTTGCCCATCTCTCCC           <  SRR4302536.4955481/94‑1 (MQ=60)

                                                                                    GCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAGAGCCATTTTTTTGCCCATCTCTCCC           >  SRR4302536.4647777/1‑94 (MQ=60)

                                                                                      ccCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAGAGCCATTTTTTTGCCCATCTCTCCCGC         <  SRR4302536.368550/92‑1 (MQ=60)

                                                                                      ATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAGAGCCATTTTTTTGCCCATCTCTCCCGC         >  SRR4302536.4269910/1‑94 (MQ=60)

                                                                                       TCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAGAGCCATTTTTTTGCCCATCTCTCCCGCC        >  SRR4302536.1814346/1‑94 (MQ=60)

                                                                                        CCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAGAGCCATTTTTTTGCCCATCTCTCCCGCCT       >  SRR4302536.3099193/1‑94 (MQ=60)

                                                                                            CGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAGAGCCATTTTTTTGCCCATCTCTCCCGCCTGAAA   >  SRR4302536.1595849/1‑94 (MQ=60)

                                                                                             GGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAGAGCCATTTTTTTGCCCATCTCTCCCGCCTGAAAC  >  SRR4302536.4087723/1‑94 (MQ=60)

TGATATCGAGCTGTCTTTGAGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAGAGCCATTTTTTTGCCCATCTCTCCCGCCTGAAAC  >  NC_000913/2406738‑2406924

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 31 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`