Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1475	266.7	13469680	98.2%	13227225	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,454,538	T→C	N175N (AAT→AAC)	b3325 →	YheF

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,454,538	0	T	C	100.0%	883.7 / NA	264	N175N (AAT→AAC)	b3325	YheF
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (135/129); total (135/129)

Only 100 of 277 total aligned reads displayed.

CAGATGATGGATGCGGGTAGCGTCGGTAATGTTGTGCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAATAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAATTATTCATCTGGAATATGCGTCAGCGGAAGATCT  >  NC_000913/3454449‑3454627

  gatgatGGATGCGGGTAGCGTCGGTAATGTTGTGCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACt                                                                                      >  1:4327367/1‑93 (MQ=255)

  gatgatGGATGCGGGTAGCGTCGGTAATGTTGTGCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACt                                                                                      >  1:4500252/1‑93 (MQ=255)

   atgatgGATGCGGGTAGCGTCGGTAATGTTGTGCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTg                                                                                     <  1:4008068/93‑1 (MQ=255)

    tgatgGATGCGGGTAGCGTCGGTAATGTTGTGCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGa                                                                                    <  2:4461253/93‑1 (MQ=255)

     gatggatgCGGGTAGCGTCGGTAATGTTGTGCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGAt                                                                                   >  1:4085028/1‑93 (MQ=255)

     gatggatgCGGGTAGCGTCGGTAATGTTGTGCATTATGAACCCTCCAACGTTCTTATTCTAACCGGTCGTGCCTCCACCATTAACAAACTGAt                                                                                   >  1:4680819/1‑93 (MQ=255)

      atggatgCGGGTAGCGTCGGTAATGTTGTGCATTATGACCCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGAtt                                                                                  <  1:4834139/93‑1 (MQ=255)

      atggatgCGGGTAGCGTCGGTAATGTTGTGCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGAtt                                                                                  <  1:869801/93‑1 (MQ=255)

       tggatgCGGGTAGCGTCGGTAATGTTGTGCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTg                                                                                 <  2:297055/93‑1 (MQ=255)

        ggatgCGGGTAGCGTCGGTAATGTTGTGCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGa                                                                                >  1:1917502/1‑93 (MQ=255)

         gatgCGGGTAGCGTCGGTAATGTTGTGCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGaa                                                                               <  2:2607852/93‑1 (MQ=255)

         gatgCGGGTAGCGTCGGTAATGTTGTGCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGaa                                                                               <  2:583721/93‑1 (MQ=255)

              gggTAGCGTCGGTAATGTTGTGCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCaa                                                                          >  1:554986/1‑92 (MQ=255)

              gggTAGCGTCGGTAATGTTGTGCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCAt                                                                          >  1:3143316/1‑93 (MQ=255)

               ggTAGCGTCGGTAATGTTGTGCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATa                                                                         <  2:6638705/93‑1 (MQ=255)

                gTAGCGTCGGTAATGTTGTGCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATaa                                                                        <  2:249315/93‑1 (MQ=255)

                 tAGCGTCGGTAATGTTGTGCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCTCCATTAACAAACTGATTGAAGTCATaaa                                                                       <  1:2879016/93‑1 (MQ=255)

                 tAGCGTCGGTAATGTTGTGCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATaaa                                                                       <  2:2233824/93‑1 (MQ=255)

                  aGCGTCGGTAATGTTGTGCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAg                                                                      <  2:289033/93‑1 (MQ=255)

                  aGCGTCGGTAATGTTGTGCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAg                                                                      >  2:3369204/1‑93 (MQ=255)

                  aGCGTCGGTAATGTTGTGCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAg                                                                      <  1:3882094/93‑1 (MQ=255)

                   gCGTCGGTAATGTTGTGCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAgc                                                                     <  1:5613879/93‑1 (MQ=255)

                   gCGTCGGTAATGTTGTGCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAgc                                                                     <  2:2560390/93‑1 (MQ=255)

                     gTCGGTAATGTTGTGCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAgcgc                                                                   <  2:5603317/93‑1 (MQ=255)

                     gTCGGTAATGTTGTGCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAgcgc                                                                   <  2:4676333/93‑1 (MQ=255)

                     gTCGGTAATGTTGTGCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAgcgc                                                                   <  2:2040642/93‑1 (MQ=255)

                      tCGGTAATGTTGTGCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGcgcg                                                                  >  2:5157905/1‑93 (MQ=255)

                          tAATGTTGTGCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGa                                                              <  1:277101/93‑1 (MQ=255)

                          tAATGTTGTGCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGa                                                              >  1:1682862/1‑93 (MQ=255)

                            aTGTTGTGCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATg                                                            >  2:4768019/1‑93 (MQ=255)

                             tgttgtGCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGt                                                           <  1:2488159/93‑1 (MQ=255)

                             tgttgtGCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGt                                                           >  1:1147467/1‑93 (MQ=255)

                              gttgtGCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTc                                                          <  1:1485820/93‑1 (MQ=255)

                               ttgtGCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCa                                                         <  2:2359683/93‑1 (MQ=255)

                                tgtgCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCAt                                                        <  2:5984597/93‑1 (MQ=255)

                                   gCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCgg                                                     >  2:4087113/1‑93 (MQ=255)

                                     aTTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGca                                                   >  1:635637/1‑93 (MQ=255)

                                     aTTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGca                                                   >  1:4994189/1‑93 (MQ=255)

                                     aTTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGca                                                   <  1:5339349/93‑1 (MQ=255)

                                      ttATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGcac                                                  >  1:142538/1‑93 (MQ=255)

                                      ttATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGcac                                                  >  1:2647693/1‑93 (MQ=255)

                                      ttATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGcac                                                  >  1:5298762/1‑93 (MQ=255)

                                        aTGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACag                                                >  2:1319315/1‑93 (MQ=255)

                                         tGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACaga                                               <  2:5537211/93‑1 (MQ=255)

                                         tGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACaga                                               >  1:2199846/1‑93 (MQ=255)

                                          gAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACagag                                              >  2:5097404/1‑93 (MQ=255)

                                          gAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACagag                                              <  2:5326578/93‑1 (MQ=255)

                                          gAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACagag                                              >  1:2019713/1‑93 (MQ=255)

                                            aCCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGaa                                            <  1:1548147/93‑1 (MQ=255)

                                             cccTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAag                                           <  1:1794736/93‑1 (MQ=255)

                                             cccTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAag                                           >  1:2159436/1‑93 (MQ=255)

                                              ccTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAagc                                          >  1:2332031/1‑93 (MQ=255)

                                               cTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAagca                                         <  2:424177/93‑1 (MQ=255)

                                               cTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAagca                                         >  2:4049378/1‑93 (MQ=255)

                                               cTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAagca                                         >  2:6180293/1‑93 (MQ=255)

                                                tCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAagcag                                        >  2:5784765/1‑93 (MQ=255)

                                                 ccAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAagcagc                                       <  2:1891475/93‑1 (MQ=255)

                                                 ccAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAagcagc                                       <  2:916532/93‑1 (MQ=255)

                                                  cAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAgcagca                                      <  1:5052025/93‑1 (MQ=255)

                                                   aaCGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCaa                                     >  1:6595552/1‑93 (MQ=255)

                                                    aCGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAACaaa                                    >  1:6104498/1‑93 (MQ=255)

                                                      gTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAatt                                  >  2:3856229/1‑93 (MQ=255)

                                                       ttCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAatta                                 <  1:1638633/93‑1 (MQ=255)

                                                       ttCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAatta                                 <  1:3797730/93‑1 (MQ=255)

                                                       ttCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAatta                                 >  1:4422564/1‑93 (MQ=255)

                                                       ttCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAatta                                 <  2:4633521/93‑1 (MQ=255)

                                                        tCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAattat                                <  1:1040593/93‑1 (MQ=255)

                                                         cTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAattatt                               <  1:68313/93‑1 (MQ=255)

                                                         cTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAattatt                               >  2:3021370/1‑93 (MQ=255)

                                                            aTTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAATTATTCAt                            >  1:3617616/1‑93 (MQ=255)

                                                            aTTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAATTATTCAt                            >  1:2979479/1‑93 (MQ=255)

                                                             ttCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAATTATTCATc                           <  2:6349170/93‑1 (MQ=255)

                                                             ttCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAATTATTCATc                           <  2:6121012/93‑1 (MQ=255)

                                                             ttCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAATTATTCATc                           >  2:1694704/1‑93 (MQ=255)

                                                             ttCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAATTATTCATc                           >  2:5674586/1‑93 (MQ=255)

                                                              tCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAATTATTCATCt                          <  1:5227209/93‑1 (MQ=255)

                                                              tCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAATTATTCATCt                          <  2:1136327/93‑1 (MQ=255)

                                                                  aCCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAATTATTCATCTGGaa                      <  1:2392442/93‑1 (MQ=255)

                                                                  aCCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAATTATTCATCTGGaa                      >  1:1844430/1‑93 (MQ=255)

                                                                   ccGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAATTATTCATCTGGAat                     >  2:3094216/1‑93 (MQ=255)

                                                                   ccGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAATTATTCATCTCGAat                     >  1:4892665/1‑93 (MQ=255)

                                                                    cGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAATTATTCATCTGGAata                    <  2:3772012/93‑1 (MQ=255)

                                                                      gTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAATTATTCATCTGGAATATg                  >  2:562450/1‑93 (MQ=255)

                                                                        cGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAATTATTCATCTGGAATATGCg                <  1:988081/93‑1 (MQ=255)

                                                                          tGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAATTATTCATCTGGAATATGCGTc              <  1:5792958/93‑1 (MQ=255)

                                                                           gCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAATTATTCATCTGGAATATGCGTCa             <  2:3120657/93‑1 (MQ=255)

                                                                           gCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAATTATTCATCTGGAATATGCGTCa             <  2:3627383/93‑1 (MQ=255)

                                                                             cTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAATTATTCATCTGGAATATGCGTCAGc           >  1:5419298/1‑93 (MQ=255)

                                                                              tCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAATTATTCATCTGGAATATGCGTCAGCg          >  2:5066303/1‑93 (MQ=255)

                                                                               ccaccaTTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAATTATTCATCTGGAATATGCGTCAGCgg         >  1:1232704/1‑93 (MQ=255)

                                                                                 accaTTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAATTATTCATCTGGAATATGCGTCAGCGGaa       <  1:3363967/93‑1 (MQ=255)

                                                                                 accaTTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAATTATTCATCTGGAATATGCGTCAGCGGaa       <  2:3285246/93‑1 (MQ=255)

                                                                                  ccaTTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCAGCGGCACAGAGAAGCAGCAAATTATTCATCTGGAATATGCGTCAGCGGAAg      >  2:4693804/1‑93 (MQ=255)

                                                                                     ttAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAATTATTCATCTGGAATATGCGTCAGCGGAAGAtc   <  1:4162709/93‑1 (MQ=255)

                                                                                      taacaaACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAATTATTCATCTGGAATATGCGTCAGCGGAAGAtct  <  1:107955/93‑1 (MQ=255)

                                                                                      taacaaACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAATTATTCATCTGGAATATGCGTCAGCGGAAGAtct  <  2:5916404/93‑1 (MQ=255)

                                                                                      taacaaACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAATTATTCATCTGGAATATGCGTCAGCGGAAGAtct  <  2:5868437/93‑1 (MQ=255)

                                                                                      taacaaACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAATTATTCATCTGGAATATGCGTCAGCGGAAGAtct  <  2:5252324/93‑1 (MQ=255)

                                                                                      taacaaACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAATTATTCATCTGGAATATGCGTCAGCGGAAGAtct  <  1:6526489/93‑1 (MQ=255)

                                                                                      taacaaACAGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAATTATTCATCTGGAATATGCGTCAGCGGAAGAtct  >  1:6536246/1‑93 (MQ=255)

CAGATGATGGATGCGGGTAGCGTCGGTAATGTTGTGCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAATAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAATTATTCATCTGGAATATGCGTCAGCGGAAGATCT  >  NC_000913/3454449‑3454627

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 24 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CCGCCAGATGATGGATGCGGGTAGCGTCGGTAATGTTGTGCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAATAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAATTATTCATCTGGAATATGCGTCAGCGGAAGATCTCGCC  >  NC_000913/3454445‑3454631

CCGCCAGATGATGGATGCGGGTAGCGTCGGTAATGTTGTGCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAAC                                                                                               <  SRR4302536.4517652/94‑1 (MQ=60)

 CGCCTGATGATGGATGCGGGTAGCGTCGTTAATGTTGTGCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCTCCATTAACA                                                                                              <  SRR4302536.3199499/94‑1 (MQ=60)

     AGATGATGGATGCGGGTAGCGTCGGTAATGTTGTGCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACT                                                                                          >  SRR4302536.807477/1‑94 (MQ=60)

     AGATGATGGATGCGGGTAGCGTCGGTAATGTTGTGCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACT                                                                                          >  SRR4302536.4635312/1‑94 (MQ=60)

     AGATGATGGATGCGGGTAGCGTCGGTAATGTTGTGCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACT                                                                                          >  SRR4302536.4456953/1‑94 (MQ=60)

      GATGATGGATGCGGGTAGCGTCGGTAATGTTGTGCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTG                                                                                         >  SRR4302536.2982236/1‑94 (MQ=60)

       ATGATGGATGCGGGTAGCGTCGGTAATGTTGTGCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGA                                                                                        <  SRR4302536.4127005/94‑1 (MQ=60)

        TGATGGATGCGGGTAGCGTCGGTAATGTTGTGCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGAT                                                                                       <  SRR4302536.4723205/94‑1 (MQ=60)

        TGATGGATGCGGGTAGCGTCGGTAATGTTGTGCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGAT                                                                                       >  SRR4302536.6910826/1‑94 (MQ=60)

        TGATGGATGCGGGTAGCGTCGGTAATGTTGTGCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGAT                                                                                       >  SRR4302536.4206137/1‑94 (MQ=60)

        TGATGGATGCGGGTAGCGTCGGTAATGTTGTGCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGAT                                                                                       >  SRR4302536.4206138/1‑94 (MQ=60)

        TGATGGATGCGGGTAGCGTCGGTAATGTTGTGCATTATGAACCCTCCAACGTTCTTATTCTAACCGGTCGTGCCTCCACCATTAACAAACTGAT                                                                                       >  SRR4302536.4821588/1‑94 (MQ=60)

        TGATAGATGCGGGTAGCGTCGGCAATGTTGTGCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCACTAACAAACTGAT                                                                                       >  SRR4302536.6187316/1‑94 (MQ=60)

         GATGGATGCCGGTAGCGTCGGTAATGTTGTGCATTATGAACCCTCCAACGTTCTTATTCTGCCCGGTCTTGCCTCCACCATTAACAAACTGATT                                                                                      <  SRR4302536.4169969/94‑1 (MQ=60)

          ATGGATGCGGGTAGCGTCGGTAATGTTGTGCATTATGACCCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTG                                                                                     <  SRR4302536.4979630/94‑1 (MQ=60)

          ATGGATGCGGGTAGCGTCGGTAATGTTGTGCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTG                                                                                     <  SRR4302536.895422/94‑1 (MQ=60)

          ATGGATGCGGGTAGCGTCGGCAATGTTGTGCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTG                                                                                     >  SRR4302536.6705195/1‑94 (MQ=60)

           TGGATGCGGGTAGCGTCGGTAATGTTGTGCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGA                                                                                    >  SRR4302536.402335/1‑94 (MQ=60)

           TGGATGCGGGTAGCGTCGGTAATGTTGTGCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGA                                                                                    >  SRR4302536.1975192/1‑94 (MQ=60)

             GATGCGGGTAGCGTCGGTAATGTTGTGCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAG                                                                                  <  SRR4302536.3986397/94‑1 (MQ=60)

             GATGCGGGTAGCGTCGGTAATGTTGTGCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAG                                                                                  <  SRR4302536.5401778/94‑1 (MQ=60)

              GTGCGGGTAGAGTCGGTAATGTTGTGCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGT                                                                                 <  SRR4302536.2083318/94‑1 (MQ=60)

              ATGCGGGTAGCGTCGGTAATGTTGTGCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGT                                                                                 >  SRR4302536.2033231/1‑94 (MQ=60)

                GCGGGTAGCGTCGGTAATGTTGTGCATTATGAACCCTCCAACGTGCTTATTCTGACCGGTCGTGCCTCCCCCATTAACAAACTGATTGAAGTCA                                                                               <  SRR4302536.4620965/94‑1 (MQ=60)

                 CGGGTAGCGTCGGTAATGTTGTGCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCAT                                                                              >  SRR4302536.1465/1‑94 (MQ=60)

                 CGGGTAGCGTCGGTAATGTTGTGCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCAT                                                                              <  SRR4302536.1954271/94‑1 (MQ=60)

                 CGGGTAGCGTCGGTAATGTTGTGCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCAT                                                                              >  SRR4302536.3235359/1‑94 (MQ=60)

                 CGGGTAGCGTCGGTAATGTTGTGCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCAA                                                                              >  SRR4302536.569119/1‑94 (MQ=60)

                    GTAGCGTCGGTAATGTTGTGCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAA                                                                           <  SRR4302536.6581481/94‑1 (MQ=60)

                     TAGCGTCGGTAATGTTGTGCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCTCCATTAACAAACTGATTGAAGTCATAAAG                                                                          <  SRR4302536.2963992/94‑1 (MQ=60)

                     TAGCGTCGGTAATGTTGTGCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAG                                                                          <  SRR4302536.5484945/94‑1 (MQ=60)

                     TAGCGTCGGTAATGTTGTGCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAG                                                                          <  SRR4302536.1680223/94‑1 (MQ=60)

                      AGCGTCGGTAATGTTGTGCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGG                                                                         >  SRR4302536.2286498/1‑94 (MQ=60)

                      AGCGTCGGTAATGTTGTGCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGC                                                                         >  SRR4302536.6787199/1‑94 (MQ=60)

                      AGCGTCGGTAATGTTGTGCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGC                                                                         <  SRR4302536.3997573/94‑1 (MQ=60)

                       GCGTCGGTAATGTTGTGCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCG                                                                        <  SRR4302536.5780639/94‑1 (MQ=60)

                        CGTCGGTAATGTTGTGCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATACAGCGC                                                                       >  SRR4302536.2933099/1‑94 (MQ=60)

                         GTCGGTAATGTTGTGCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCG                                                                      <  SRR4302536.4987214/94‑1 (MQ=60)

                         CTCGGTAATGTTGTGCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCG                                                                      <  SRR4302536.537246/94‑1 (MQ=60)

                           CGGTAATGTTGTGCATTATGAACCCTCCAACTTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTT                                                                    <  SRR4302536.5522472/94‑1 (MQ=60)

                             GTAATGTTGTGCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGA                                                                  >  SRR4302536.1731622/1‑94 (MQ=60)

                              TAATGTTGTGCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGAT                                                                 <  SRR4302536.284467/94‑1 (MQ=60)

                               AATGTTGTGCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATG                                                                <  SRR4302536.6402426/94‑1 (MQ=60)

                                ATGTTGTGCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGT                                                               >  SRR4302536.2407610/1‑94 (MQ=60)

                                ATGTTGTGCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGT                                                               <  SRR4302536.5585943/94‑1 (MQ=60)

                                ATGTTGTGCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGT                                                               >  SRR4302536.1647001/1‑94 (MQ=60)

                                ATGTTGTGCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGT                                                               >  SRR4302536.1181972/1‑94 (MQ=60)

                                ATGTTGTGCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGT                                                               <  SRR4302536.351771/94‑1 (MQ=60)

                                ATGTTGTGCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGT                                                               >  SRR4302536.2022241/1‑94 (MQ=60)

                                 TGTTGTGCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTC                                                              <  SRR4302536.548803/94‑1 (MQ=60)

                                 TGTTGTGCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTC                                                              <  SRR4302536.2563224/94‑1 (MQ=60)

                                  GTTGTGCATTATGAACCCTCCAGCGTTCTTATTCTGACCGGTTGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCA                                                             >  SRR4302536.5775306/1‑94 (MQ=60)

                                  GTTGTGCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCA                                                             <  SRR4302536.1214082/94‑1 (MQ=60)

                                  GTTGTGCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCA                                                             <  SRR4302536.1529713/94‑1 (MQ=60)

                                     GTGCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCG                                                          >  SRR4302536.1705028/1‑94 (MQ=60)

                                      TGCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGGGCCTCCACCAATAGCAAACGGATTGAAGTCATAAAGCGCGTTGATGTCATCGG                                                         <  SRR4302536.411700/94‑1 (MQ=60)

                                       GCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGC                                                        <  SRR4302536.903846/94‑1 (MQ=60)

                                        CATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCA                                                       >  SRR4302536.654426/1‑94 (MQ=60)

                                        CATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCA                                                       >  SRR4302536.1448567/1‑94 (MQ=60)

                                        CATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCA                                                       >  SRR4302536.5144083/1‑94 (MQ=60)

                                         ATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCAC                                                      <  SRR4302536.5498840/94‑1 (MQ=60)

                                         ATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCAC                                                      >  SRR4302536.5456779/1‑94 (MQ=60)

                                         ATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCAC                                                      >  SRR4302536.2727013/1‑94 (MQ=60)

                                         ATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCAC                                                      >  SRR4302536.244308/1‑94 (MQ=60)

                                         ATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCAC                                                      >  SRR4302536.146254/1‑94 (MQ=60)

                                          TTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACA                                                     <  SRR4302536.2616977/94‑1 (MQ=60)

                                          TTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACA                                                     <  SRR4302536.4619562/94‑1 (MQ=60)

                                          TTATGAACCCTCCAACGTTCTTATACTGACCGGACGAGCCTCCACCATTAACAAACTGATTGAAGGCATAAAGCGCGTTGATGTCATCGGCACA                                                     >  SRR4302536.4777377/1‑94 (MQ=60)

                                            ATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATGGGCACAGA                                                   >  SRR4302536.1590852/1‑94 (MQ=60)

                                            ATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGA                                                   >  SRR4302536.2266251/1‑94 (MQ=60)

                                            ATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGA                                                   >  SRR4302536.4712807/1‑94 (MQ=60)

                                            ATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGA                                                   <  SRR4302536.510026/94‑1 (MQ=60)

                                             TGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAG                                                  <  SRR4302536.6892187/94‑1 (MQ=60)

                                             TGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAG                                                  <  SRR4302536.4517145/94‑1 (MQ=60)

                                             TGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAG                                                  >  SRR4302536.2080495/1‑94 (MQ=60)

                                             TGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAG                                                  >  SRR4302536.5759693/1‑94 (MQ=60)

                                               AACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAA                                                <  SRR4302536.1892621/94‑1 (MQ=60)

                                               AACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAA                                                >  SRR4302536.5166385/1‑94 (MQ=60)

                                                ACCCTCCAACGTTCTTATTCTGACCGGTCGTGCGTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCGCAGAGAAG                                               <  SRR4302536.3446779/94‑1 (MQ=60)

                                                ACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAG                                               <  SRR4302536.1593656/94‑1 (MQ=60)

                                                ACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAG                                               >  SRR4302536.2224380/1‑94 (MQ=60)

                                                ACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAG                                               <  SRR4302536.114127/94‑1 (MQ=60)

                                                ACCCGCCCACCTTCTTATTCTGACCGGTCGCGCCTCCACCACTAACAACCTGATTGAACTCAGAAAGCGCGTTGATGTCATCGGCACAGAGAAG                                               <  SRR4302536.3936069/94‑1 (MQ=60)

                                                 CCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGC                                              <  SRR4302536.1848917/94‑1 (MQ=60)

                                                 CCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGC                                              >  SRR4302536.2402788/1‑94 (MQ=60)

                                                   CTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAG                                            >  SRR4302536.6118913/1‑94 (MQ=60)

                                                    TCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGC                                           >  SRR4302536.3064344/1‑94 (MQ=60)

                                                      CAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAA                                         <  SRR4302536.5203397/94‑1 (MQ=60)

                                                      CAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAA                                         >  SRR4302536.6791751/1‑94 (MQ=60)

                                                      CAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAA                                         >  SRR4302536.1972351/1‑94 (MQ=60)

                                                       AACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAACAAA                                        >  SRR4302536.6286498/1‑94 (MQ=60)

                                                         CGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAATT                                      >  SRR4302536.1559767/1‑94 (MQ=60)

                                                         CGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAATT                                      >  SRR4302536.2540387/1‑94 (MQ=60)

                                                         CGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAATT                                      >  SRR4302536.1269713/1‑94 (MQ=60)

                                                          GTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAATTA                                     >  SRR4302536.5604480/1‑94 (MQ=60)

                                                          GTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAATTA                                     >  SRR4302536.4555017/1‑94 (MQ=60)

                                                           TTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAATTAT                                    <  SRR4302536.1686337/94‑1 (MQ=60)

                                                           TTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAATTAT                                    <  SRR4302536.3911002/94‑1 (MQ=60)

                                                            TCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAATTATT                                   <  SRR4302536.6085709/94‑1 (MQ=60)

                                                            TCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAATTATT                                   <  SRR4302536.1071511/94‑1 (MQ=60)

                                                             CTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAATTATTC                                  >  SRR4302536.4247951/1‑94 (MQ=60)

                                                             CTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAATTATTC                                  <  SRR4302536.70169/94‑1 (MQ=60)

                                                              TTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAATTATTCA                                 <  SRR4302536.3986425/94‑1 (MQ=60)

                                                              TTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAATTATTCA                                 <  SRR4302536.1087502/94‑1 (MQ=60)

                                                               TATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAATTATTCAT                                >  SRR4302536.3067176/1‑94 (MQ=60)

                                                               TATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAATTATTCAT                                >  SRR4302536.3725770/1‑94 (MQ=60)

                                                                ATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAATTATTCATC                               >  SRR4302536.3838230/1‑94 (MQ=60)

                                                                 TTCTGACCGGTCGTGCCTCTACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAATTATTCATCT                              <  SRR4302536.2508070/94‑1 (MQ=60)

                                                                 TTCTGACCGGTCGTGCCTCCACCATTAACAACCTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAATTATTCATCT                              <  SRR4302536.2774564/94‑1 (MQ=60)

                                                                 TTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAATTATTCATCT                              >  SRR4302536.5263391/1‑94 (MQ=60)

                                                                 TTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAAGTATTCATCT                              <  SRR4302536.6725650/94‑1 (MQ=60)

                                                                  TCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAATTATTCATCTG                             <  SRR4302536.1729831/94‑1 (MQ=60)

                                                                  TCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAATTATTCATCTG                             <  SRR4302536.5382958/94‑1 (MQ=60)

                                                                   CTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAATTATTCATCTGG                            >  SRR4302536.4315561/1‑94 (MQ=60)

                                                                   CTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAATTATTCATCTGG                            >  SRR4302536.2746893/1‑94 (MQ=60)

                                                                     GACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAATTATTCATCTGGAA                          >  SRR4302536.1900001/1‑94 (MQ=60)

                                                                      ACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAATTATTCATCTGGAAT                         <  SRR4302536.2464870/94‑1 (MQ=60)

                                                                      ACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAATTATTCATCTCGAAT                         >  SRR4302536.5039830/1‑94 (MQ=60)

                                                                       CCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAATTATTCATCTGGAATA                        <  SRR4302536.2178832/94‑1 (MQ=60)

                                                                        CGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAATTATTCATCTGGAATAT                       <  SRR4302536.1433750/94‑1 (MQ=60)

                                                                        CGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAATTATTCATCTGGAATAT                       <  SRR4302536.1151572/94‑1 (MQ=60)

                                                                        CGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAATTATTCATCTGGAATAT                       >  SRR4302536.2261926/1‑94 (MQ=60)

                                                                         GGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAATTATTCATCTGGAttttg                      >  SRR4302536.1884670/1‑89 (MQ=60)

                                                                         GGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAATTATTCATCTGGAATATG                      <  SRR4302536.6495424/94‑1 (MQ=60)

                                                                           TCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAATTATTCATCTGGAATATGCG                    <  SRR4302536.5328755/94‑1 (MQ=60)

                                                                            CGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAATTATTCATCTGGAATATGCGT                   <  SRR4302536.1017235/94‑1 (MQ=60)

                                                                            CGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAATTATTCATCTGGAATATGCGT                   >  SRR4302536.187143/1‑94 (MQ=60)

                                                                            CGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAATTATTCATCTGGAATATGCGT                   <  SRR4302536.238614/94‑1 (MQ=60)

                                                                             GTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAATTATTCATCTGGAATATGCGTC                  <  SRR4302536.3776467/94‑1 (MQ=60)

                                                                              TGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAATTATTCATCTGGAATATGCGTCA                 <  SRR4302536.5965413/94‑1 (MQ=60)

                                                                               GCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAATTATTCATCTGGAATATGCGTCAG                <  SRR4302536.4943962/94‑1 (MQ=60)

                                                                                CCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAATTATTCATCTGGAATATGCGTCAGC               >  SRR4302536.5581292/1‑94 (MQ=60)

                                                                                CCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAATTATTCATCTGGAATATGCGTCAGC               >  SRR4302536.3662734/1‑94 (MQ=60)

                                                                                CCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAATTATTCATCTGGAATATGCGTCAGC               >  SRR4302536.773741/1‑94 (MQ=60)

                                                                                CCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAATTATTCATCTGGAATATGCGTCAGC               >  SRR4302536.4421333/1‑94 (MQ=60)

                                                                                 CTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAATTATTCATCTGGAATATGCGTCAGCG              <  SRR4302536.1828215/94‑1 (MQ=60)

                                                                                  TCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAATTATTCATCTGGAATATGCGTCAGCGG             >  SRR4302536.1269726/1‑94 (MQ=60)

                                                                                   CCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAATTATTCATCTGGAATATGCGTCAGCGGA            >  SRR4302536.91525/1‑94 (MQ=60)

                                                                                   CCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAATTATTCATCTGGAATATGAGTCAGCGGA            <  SRR4302536.6732988/94‑1 (MQ=60)

                                                                                    CGCCATTAACAAACTGATTGAAGTCATAAAGCGGGTTGATGTCATCGGCACAGAGAAGCAGCAAATTATTCATCTAGAATATGCGTCAGCGGAA           >  SRR4302536.3232658/1‑94 (MQ=60)

                                                                                     ACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAATTATTCATCTGGAATATGCGTCAGCGGAAG          <  SRR4302536.3463887/94‑1 (MQ=60)

                                                                                     ACCATTAACAAACTGATTGAACTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAATTATTCATCTGGAATATGCGTCAGCGGAAG          <  SRR4302536.5107420/94‑1 (MQ=60)

                                                                                      CCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAATTATTCATCTGGAATATGCGTCAGCGGGAGA         >  SRR4302536.4182021/1‑94 (MQ=60)

                                                                                       CATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAATTATTCATCTGGAATATGCGTCAGCGGAAGAT        <  SRR4302536.578396/94‑1 (MQ=60)

                                                                                       CATTAACAAACTGAATGAAGTCATAAAGCGCGTTGATCTCATCGTCACAGAGAAGCAGCAAATTATTCATCTGGAATATGCGTCAGCGGAAGAT        <  SRR4302536.5189505/94‑1 (MQ=60)

                                                                                        ATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAATTATTCATCTGGAATATGCGTCAGCGGAAGATC       <  SRR4302536.2863668/94‑1 (MQ=60)

                                                                                        ATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAATTATTCATCTGGAATATGCGTCAGCGGAAGATC       >  SRR4302536.3258589/1‑94 (MQ=60)

                                                                                         TTAACAAACTGATTGAAGTCATAAAGCGTGTTGATGTCATCGGCACAGAGAAGCAGCAAATTATTCATCTGGAATATGCGTCAGCGGAAGATCT      <  SRR4302536.4912462/94‑1 (MQ=60)

                                                                                         TTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAATTATTCATCTGGAATATGCGTCAGCGGAAGATCT      <  SRR4302536.4286368/94‑1 (MQ=60)

                                                                                         TTAACAAACAGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAATTATTCATCTGGAATATGCGTCAGCGGAAGATCT      >  SRR4302536.6730935/1‑94 (MQ=60)

                                                                                          TAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAATTATTCATCTGGAATATGCGTCAGCGGAAGATCTC     <  SRR4302536.6720885/94‑1 (MQ=60)

                                                                                          TAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAATTATTCATCTGGAATATGCGTCAGCGGAAGATCTC     <  SRR4302536.110825/94‑1 (MQ=60)

                                                                                          TAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAATTATTCATCTGGAATATGCGTCAGCGGAAGATCTC     >  SRR4302536.2933952/1‑94 (MQ=60)

                                                                                           AACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAATTATTCATCTGGAATATGCGTCAGCGGAAGATCTCG    >  SRR4302536.4300832/1‑94 (MQ=60)

                                                                                             CAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAATTATTCATCTGGAATATGCGTCAGCGGAAGATCTCGCC  >  SRR4302536.3036629/1‑94 (MQ=60)

CCGCCAGATGATGGATGCGGGTAGCGTCGGTAATGTTGTGCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAATAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAATTATTCATCTGGAATATGCGTCAGCGGAAGATCTCGCC  >  NC_000913/3454445‑3454631

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`