Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 1475 266.7 13469680 98.2% 13227225 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,108,133 A→G G208G (GGA→GGG)  cdh → CDP‑diacylglycerol phosphotidylhydrolase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,108,1330AG100.0% 818.8 / NA 251G208G (GGA→GGG) cdhCDP‑diacylglycerol phosphotidylhydrolase
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (127/124);  total (127/124)

Only 100 of 260 total aligned reads displayed.

GGCGCGTCGGGTAACGGAAAGCGAACTGGTACAACGCAGCCCATTTATGATGCTGGCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGACGCTACGGGCTGGCGATGGTACGGCAGAGTGATAACTCATTTGTATTGCTGGCGACACAACGAAATCTACTGACGCTTAACCGTGCTTC  >  NC_000913/4108043‑4108222
                                                                                          |                                                                                         
  cgcgTCGGGTAACGGAAAGCGAACTGGTACAACGCAGCCCATTTATGATGCTGGCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGGCGCt                                                                                       <  1:827088/93‑1 (MQ=255)
   gcgTCGGGTAACGGAAAGCGAACTGGTACAACGCAGCCCATTTATGATGCTGGCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGGCGCTa                                                                                      <  2:1853145/93‑1 (MQ=255)
   gcgTCGGGTAACGGAAAGCGAACTGGTACAACGCAGCCCATTTATGATGCTGGCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGGCGCTa                                                                                      >  2:5789718/1‑93 (MQ=255)
     gTCGGGTAACGGAAAGCGAACTGGTACAACGCAGCCCATTTATGATGCTGGCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGGCGCTACg                                                                                    >  2:4489740/1‑93 (MQ=255)
        gggTAACGGAAAGCGAACTGGTACAACGCAGCCCATTTATGATGCTGGCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGGCGCTACGGGc                                                                                 <  2:5257909/93‑1 (MQ=255)
         ggTAACGGAAAGCGAACTGGTACAACGCAGCCCATTTATGATGCTGGCAGAAGAAGTACCTGAGGCGCTGGAACATATGGGGCGCTACGGGCt                                                                                <  1:6460285/93‑1 (MQ=255)
         ggTAACGGAAAGCGAACTGGTACAACGCAGCCCATTTATGATGCTGGCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGGCGCTACGGGCt                                                                                >  2:74603/1‑93 (MQ=255)
          gTAACGGAAAGCGAACTGGTACAACGCAGCCCATTTATGATGCTGGCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGGCGCTACGGGCTg                                                                               <  1:3806409/93‑1 (MQ=255)
          gTAACGGAAAGCGAACTGGTACAACGCAGCCCATTTATGATGCTGGCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGGCGCTACGGGCTg                                                                               <  2:1351161/93‑1 (MQ=255)
           tAACGGAAAGCGAACTGGTACAACGCAGCCCATTTATGATGCTGGCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGGCGCTACGGGCTgg                                                                              <  1:1351542/93‑1 (MQ=255)
            aaCGGAAAGCGAACTGGTACAACGCAGCCCATTTATGATGCTGGCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGGCGCTACGGGCTggg                                                                             >  1:1644364/1‑92 (MQ=255)
            aaCGGAAAGCGAACTGGTACAACGCAGCCCATTTATGATGCTGGCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGGCGCTACGGGCTGGc                                                                             <  1:5904168/93‑1 (MQ=255)
              cGGAAAGCGAACTGGTACAACGCAGCCCATTTATGATGCTGGCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGGCGCTACGGGCTGGCGa                                                                           >  1:355751/1‑93 (MQ=255)
              cGGAAAGCGAACTGGTACAACGCAGCCCATTTATGATGCTGGCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGGCGCTACGGGCTGGCGa                                                                           <  2:620231/93‑1 (MQ=255)
               ggAAAGCGAACTGGTACAACGCAGCCCATTTATGATGCTGGCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGGCGCTACGGGCTGGCGAt                                                                          <  1:5020901/93‑1 (MQ=255)
               ggAAAGCGAACTGGTACAACGCAGCCCATTTATGATGCTGGCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGGCGCTACGGGCTGGCGAt                                                                          <  1:4897113/93‑1 (MQ=255)
               ggAAAGCGAACTGGTACAACGCAGCCCATTTATGATGCTGGCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGGCGCTACGGGCTGGCGAt                                                                          <  1:369051/93‑1 (MQ=255)
               ggAAAGCGAACTGGTACAACGCAGCCCATTTATGATGCTGGCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGGCGCTACGGGCTGGCGAt                                                                          >  2:1557502/1‑93 (MQ=255)
                  aaGCGAACTGGTACAACGCAGCCCATTTATGATGCTGGCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGGCGCTACGGGCTGGCGATGGt                                                                       <  1:4624964/93‑1 (MQ=255)
                   aGCGAACTGGTACAACGCAGCCCATTTATGATGCTGGCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGGCGCTACGGGCTGGCGATGGTa                                                                      <  2:2269066/93‑1 (MQ=255)
                    gCGAACTGGTACAACGCAGCCCATTTATGATGCTGGCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGGCGCTACGGGCTGGCGATGGTAc                                                                     <  1:1294906/93‑1 (MQ=255)
                     cGAACTGGTACAACGCAGCCCATTTATGATGCTGGCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGGCGCTACGGGCTGGCGATGGTACg                                                                    <  1:5106003/93‑1 (MQ=255)
                     cGAACTGGTACAACGCAGCCCATTTATGATGCTGGCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGGCGCTACGGGCTGGCGATGGTACg                                                                    <  2:3241609/93‑1 (MQ=255)
                      gAACTGGTACAACGCAGCCCATTTATGATGCTGGCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGGCGCTACGGGCTGGCGATGGTACgg                                                                   >  1:2932615/1‑93 (MQ=255)
                       aaCTGGTACAACGCAGCCCATTTATGATGCTGGCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGGCGCTACGGGCTGGCGATGGTACGGc                                                                  <  1:5779339/93‑1 (MQ=255)
                         cTGGTACAACGCAGCCCATTTATGATGCTGGCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGGCGCTACGGGCTGGCGATGGTACGGCag                                                                <  1:2802146/93‑1 (MQ=255)
                             tACAACGCAGCCCATTTATGATGCTGGCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGGCGCTACGGGCTGGCGATGGTACGGCAGAGTg                                                            >  1:2250079/1‑93 (MQ=255)
                              aCAACGCAGCGCATTTATGATGCTGGGAGAAGAAGTACCTGAGGCGCGGGAACATATGGGGCGCTACGGGCTGGCGATGGTACGGCAGAGTGa                                                           <  1:1514666/93‑1 (MQ=255)
                               cAACGCAGCCCATTTATGATGCTGGCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGGCGCTACGGGCTGGCGATGGTACGGCAGAGTGAt                                                          <  2:4407168/93‑1 (MQ=255)
                                 aCGCAGCCCATTTATGATGCTGGCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGGCGCTACGGGCTGGCGATGGTACGGCAGAGTGATaa                                                        <  2:3375681/93‑1 (MQ=255)
                                 aCGCAGCCCATTTATGATGCTGGCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGGCGCTACGGGCTGGCGATGGTACGGCAGAGTGATaa                                                        >  1:108685/1‑93 (MQ=255)
                                      gCCCATTTATGATGCTGGCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGGCGCTACGGGCTGGCGATGGTACGGCAGAGTGATAACTCAt                                                   <  2:1415717/93‑1 (MQ=255)
                                      gCCCATTTATGATGCTGGCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGGCGCTACGGGCTGGCGATGGTACGGCAGAGTGATAACTCAt                                                   <  1:129055/93‑1 (MQ=255)
                                      gCCCATTTATGATGCTGGCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGGCGCTACGGGCTGGCGATGGTACGGCAGAGTGATAACTCAt                                                   <  1:6301117/93‑1 (MQ=255)
                                       cccATTTATGATGCTGGCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGGCGCTACGGGCTGGCGATGGTACGGCAGAGTGATAACTCAtt                                                  <  2:1747028/93‑1 (MQ=255)
                                        ccATTTATGATGCTGGCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGGCGCTACGGGCTGGCGATGGTACGGCAGAGTGATAACTCAttt                                                 >  1:1578539/1‑93 (MQ=255)
                                         cATTTATGATGCTGGCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGGCGCTACGGGCTGGCGATGGTACGGCAGAGTGATAACTCATTTg                                                >  2:2205268/1‑93 (MQ=255)
                                         cATTTATGATGCTGGCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGGCGCTACGGGCTGGCGATGGTACGGCAGAGGGATAACTCATTTg                                                >  2:3471700/1‑93 (MQ=255)
                                          aTTTATGATGCTGGCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGGCGCTACGGGCTGGCGATGGTACGGCAGAGTGATAACTCATTTGt                                               >  2:2492838/1‑93 (MQ=255)
                                           tttATGATGCTGGCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGGCGCTACGGGCTGGCGATGGTACGGCAGAGTGATAACTCATTTGTa                                              <  1:2885398/93‑1 (MQ=255)
                                           tttATGATGCTGGCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGGCGCTACGGGCTGGCGATGGTACGGCAGAGTGATAACTCATTTGTa                                              <  2:5390355/93‑1 (MQ=255)
                                             tATGATGCTGGCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGGCGCTACGGGCTGGCGATGGTACGGCAGAGTGATAACTCATTTGTAtt                                            <  1:4606142/93‑1 (MQ=255)
                                               tgatgCTGGCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGGCGCTACGGGCTGGCGATGGTACGGCAGAGTGATAACTCATTTGTATTGc                                          <  2:1065769/93‑1 (MQ=255)
                                                gatgCTGGCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGGCGCTACGGGCTGGCGATGGTACGGCAGAGTGATAACTCATTTGTATTGCt                                         >  1:5335058/1‑93 (MQ=255)
                                                gatgCTGGCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGGCGCTACGGGCTGGCGATGGTACGGCAGAGTGATAACTCATTTGTATTGCt                                         <  2:6309429/93‑1 (MQ=255)
                                                 atgCTGGCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGGCGCTACGGGCTGGCGATGGTACGGCAGAGTGATAACTCATTTGTATTGCTg                                        <  1:1956147/93‑1 (MQ=255)
                                                 atgCTGGCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGGCGCTACGGGCTGGCGATGGTACGGCAGAGTGATAACTCATTTGTATTGCTg                                        <  2:1248260/93‑1 (MQ=255)
                                                      ggCAGAAGAAGTACCTGCGGCGCGGGAACATATGGGGCGCTACGGGCTGGCGATGGTACGGCAGAGCGATAACTCATTTGTATTGCTGGCGac                                   >  1:2198585/1‑93 (MQ=255)
                                                      ggCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGGCGCTACGGGCTGGCGATGGTACGGCAGAGTGATAACTCATTTGTATTGCTGGCGac                                   >  1:6341455/1‑93 (MQ=255)
                                                        cAGAAGAAGTACCTGAGGCGCGGGAACATATGGGGCGCTACGGGCTGGCGATGGTACGGCAGAGTGATAACTCATTTGTATTGCTGGCGacac                                 >  2:964135/1‑93 (MQ=255)
                                                        cAGAAGAAGTACCTGAGGCGCGGGAACATATGGGGCGCTACGGGCTGGCGATGGTACGGCAGAGTGATAACTCATTTGTATTGCTGGCGacac                                 <  2:1005577/93‑1 (MQ=255)
                                                        cAGAAGAAGTACCTGAGGCGCGGGAACATATGGGGCGCTACGGGCTGGCGATGGTACGGCAGAGTGATAACTCATTTGTATTGCTGGCGacac                                 <  1:3304172/93‑1 (MQ=255)
                                                         agaagaAGTACCTGAGGCGCGGGAACATATGGGGCGCTACGGGCTGGCGATGGTACGGCAGAGTGATAACTCATTTGTATTGCTGGCGAcaca                                <  1:6213344/93‑1 (MQ=255)
                                                          gaagaaGTACCTGAGGCGCGGGAACATATGGGGCGCTACGGGCTGGCGATGGTACGGGAGAGTGATAACTCATTTGTATTGCTGGCGAGACaa                               >  1:1731426/1‑93 (MQ=255)
                                                          gaagaaGTACCTGAGGCGCGGGAACATATGGGGCGCTACGGGCTGGCGATGGTACGGCAGAGTGATAACTCATTTGTATTGCTGGCGACACaa                               >  1:4221102/1‑93 (MQ=255)
                                                          gaagaaGTACCTGAGGCGCGGGAACATATGGGGCGCTACGGGCTGGCGATGGTACGGCAGAGTGATAACTCATTTGTATTGCTGGCGACACaa                               <  1:2477517/93‑1 (MQ=255)
                                                           aagaagTACCTGAGGCGCGGGAACATATGGGGCGCTACGGGCTGGCGATGGTACGGCAGAGTGATAACTCATTTGTATTGCTGGCGACACAAc                              <  2:3984927/93‑1 (MQ=255)
                                                           aagaagTACCTGAGGCGCGGGAACATATGGGGCGCTACGGGCTGGCGATGGTACGGCAGAGTGATAACTCATTTGTATTGCTGGCGACACAAc                              <  2:6601531/93‑1 (MQ=255)
                                                           aagaagTACCTGAGGCGCGGGAACATATGGGGCGCTACGGGCTGGCGATGGTACGGCAGAGTGATAACTCATTTGTATTGCTGGCGACACAAc                              <  1:6631836/93‑1 (MQ=255)
                                                            agaagTACCTGAGGCGCGGGAACATATGGGGCGCTACGGGCTGGCGATGGTACGGCAGAGTGATAACTCATTTGTATTGCTGGCGACACAACg                             >  2:4175048/1‑93 (MQ=255)
                                                               agTACCTGAGGCGCGGGAACATATGGGGCGCTACGGGCTGGCGATGGTACGGCAGAGTGATAACTCATTTGTATTGCTGGCGACACAACGaaa                          <  1:682259/93‑1 (MQ=255)
                                                               agTACCTGAGGCGCGGGAACATATGGGGCGCTACGGGCTGGCGATGGTACGGCAGAGTGATAACTCATTTGTATTGCTGGCGACACAACGaaa                          >  2:81374/1‑93 (MQ=255)
                                                               agTACCTGAGGCGCGGGAACATATGGGGCGCTACGGGCTGGCGATGGTACGGCAGAGTGATAACTCATTTGTATTGCTGGCGACACAACGaaa                          >  2:5293750/1‑93 (MQ=255)
                                                                gTACCTGAGGCGCGGGAACATATGGGGCGCTACGGGCTGGCGATGGTACGGCAGAGTGATAACTCATTTGTATTGCTGGCGACACAACGAAAt                         >  2:1467153/1‑93 (MQ=255)
                                                                 tACCTGAGGCGCGGGAACATATGGGGCGCTACGGGCTGGCGATGGTACGGCAGAGTGATAACTCATTTGTATTGCTGGCGACACAACGAAATc                        >  2:6506023/1‑93 (MQ=255)
                                                                  aCCTGAGGCGCGGGAACATATGGGGCGCTACGGGCTGGCGATGGTACGGCAGAGTGATAACTCATTTGTATTGCTGGCGACACAACGAAATCt                       >  1:212414/1‑93 (MQ=255)
                                                                  aCCTGAGGCGCGGGAACATATGGGGCGCTACGGGCTGGCGATGGTACGGCAGAGTGATAACTCATTTGTATTGCTGGCGACACAACGAAATCt                       >  2:5119764/1‑93 (MQ=255)
                                                                   ccTGAGGCGCGGGAACATATGGGGCGCTACGGGCTGGCGATGGTACGGCAGAGTGATAACTCATTTGTATTGCTGGCGACACAACGAAATCTa                      <  1:2025100/93‑1 (MQ=255)
                                                                     tGAGGCGCGGGAACATATGGGGCGCTACGGGCTGGCGATGGGACGGCAGAGTGATAACTCATTTGTATTGCTGGCGACACAACGAAATCTACt                    >  1:1695521/1‑93 (MQ=255)
                                                                      gAGGCGCGGGAACATATGGGGCGCTACGGGCTGGCGATGGTACGGCAGAGTGGTAACTCATTTGTATTGCTGGCGACACAACGAAATCTACTg                   >  2:3907139/1‑93 (MQ=255)
                                                                      gAGGCGCGGGAACATATGGGGCGCTACGGGCTGGCGATGGTACGGCAGAGTGATAACTCATTTGTATTGCTGGCGACACAACGAAATCTACTg                   <  2:6276021/93‑1 (MQ=255)
                                                                      gAGGCGCGGGAACATATGGGGCGCTACGGGCTGGCGATGGTACGGCAGAGTGATAACTCATTTGTATTGCTGGCGACACAACGAAATCTACTg                   >  2:136790/1‑93 (MQ=255)
                                                                       aGGCGCGGGAAGATATGGGGCTCTACGGGCTGGCGATGGTACGGCAGAGTGATAACTCATTTGTATTGCTGGCGACACAACGAAATCTACTGa                  <  1:2575841/93‑1 (MQ=255)
                                                                       aGGCGCGGGAACATATGGGGCGCTACGGGCTGGCGATGGTACGGCAGAGTGATAACTCATTTGTATTGCTGGCGACACAACGAAATCTACTGa                  >  2:5423095/1‑93 (MQ=255)
                                                                        ggCGCGGGAACATATGGGGCGCTACGGGCTGGCGATGGTACGGCAGAGTGATAACTCATTTGTATTGCTGGCGACACAACGAAATCTACTGAc                 >  2:2096305/1‑93 (MQ=255)
                                                                        ggCGCGGGAACATATGGGGCGCTACGGGCTGGCGATGGTACGGCAGAGTGATAACTCATTTGTATTGCTGGCGACACAACGAAATCTACTGAc                 <  2:2433597/93‑1 (MQ=255)
                                                                          cgcgGGAACATATGGGGCGCTACGGGCTGGCGATGGTACGGCAGAGTGATAACTCATTTGTATTGCTGGCGACACAACGAAATCTACTGACGc               <  2:4846411/93‑1 (MQ=255)
                                                                           gcgGGAACATATGGGGCGCTACGGGCTGGCGATGGTACGGCAGAGTGATAACTCATTTGTATTGCTGGCGACACAACGAAATCTACTGACGCt              <  1:3430185/93‑1 (MQ=255)
                                                                           gcgGGAACATATGGGGCGCTACGGGCTGGCGATGGTACGGCAGAGTGATAACTCATTTGTATTGCTGGCGACACAACGAAATCTACTGACGCt              <  1:3110250/93‑1 (MQ=255)
                                                                            cgGGAACATATGGGGCGCTACGGGCTGGCGATGGTACGGCAGAGTGATAACTCATTTGTATTGCTGGCGACACAACGAAATCTACTGACGCtt             <  2:696140/93‑1 (MQ=255)
                                                                             gggAACATATGGGGCGCTACGGGCTGGCGATGGTACGGCAGAGTGATAACTCATTTGTATTGCTGGCGACACAACGAAATCTACTGACGCTTa            >  1:1004415/1‑93 (MQ=255)
                                                                             gggAACATATGGGGCGCTACGGGCTGGCGATGGTACGGCAGAGTGATAACTCATTTGTATTGCTGGCGACACAACGAAATCTACTGACGCTTa            >  1:5965025/1‑93 (MQ=255)
                                                                             gggAACATATGGGGCGCTACGGGCTGGCGATGGTACGGCAGAGTGATAACTCATTTGTATTGCTGGCGACACAACGAAATCTACTGACGCTTa            >  2:6032582/1‑93 (MQ=255)
                                                                             gggAACATATGGGGCGCTACGGGCTGGCGATGGTACGGCAGAGTGATAACTCATTTGTATTGCTGGCGACACAACGAAATCTACTGACGCTTa            <  1:550788/93‑1 (MQ=255)
                                                                              ggAACATATGGGGCGCTACGGGCTGGCGATGGTACGGCAGAGTGATAACTCATTTGTATTGCTGGCGACACAACGAAATCTACTGACGCTTaa           >  2:2009747/1‑93 (MQ=255)
                                                                               gAACATATGGGGCGCTACGGGCTGGCGATGGTACGGCAGAGTGATAACTCATTTGTATTGCTGGCGACACAACGAAATCTACTGACGCTTAAc          <  1:1823959/93‑1 (MQ=255)
                                                                               gAACATATGGGGCGCTACGGGCTGGCGATGGTACGGCAGAGTGATAACTCATTTGTATTGCTGGCGACACAACGAAATCTACTGACGCTTAAc          <  2:2855970/93‑1 (MQ=255)
                                                                                aaCATATGGGGCGCTACGGGCTGGCGATGGTACGGCAGAGTGATAACTCATTTGTATTGCTGGCAACACAACGAAATCTACTGACGCTTAAcc         >  1:5926751/1‑93 (MQ=255)
                                                                                  cATATGGGGCGCTACGGGCTGGCGATGGTACGGCAGAGTGATAACTCATTTGTATTGCTGGCGACACAACGAAATCTACTGACGCTTAACCGt       <  1:4068225/93‑1 (MQ=255)
                                                                                    tatGGGGCGCTACGGGCTGGCGATGGTACGGCAGAGTGATAACTCATTTGTATTGCTGGCGACACAACGAAATCTACTGACGCTTAACCGTGc     >  2:565750/1‑93 (MQ=255)
                                                                                    tatGGGGCGCTACGGGCTGGCGATGGTACGGCAGAGTGATAACTCATTTGTATTGCTGGCGACACAACGAAATCTACTGACGCTTAACCGTGc     >  2:2675579/1‑93 (MQ=255)
                                                                                    tatGGGGCGCTACGGGCTGGCGATGGTACGGCAGAGTGATAACTCATTTGTATTGCTGGCGACACAACGAAATCTACTGACGCTTAACCGTGc     <  2:503077/93‑1 (MQ=255)
                                                                                    tatGGGGCGCTACGGGCTGGCGATGGTACGGCAGAGTGATAACTCATTTGTATTGCTGGCGACACAACGAAATCTACTGACGCTTAACCGTGc     <  2:4034617/93‑1 (MQ=255)
                                                                                     atGGGGCGCTACGGGCTGGCGATGGTACGGCAGAGTGATAACTCATTTGTATTGCTGGCGACACAACGAAATCTACTGACGCTTAACCGTGCt    <  2:1119129/93‑1 (MQ=255)
                                                                                     atGGGGCGCTACGGGCTGGCGATGGTACGGCAGAGTGATAACTCATTTGTATTGCTGGCGACACAACGAAATCTACTGACGCTTAACCGTGCt    >  1:2337519/1‑93 (MQ=255)
                                                                                      tGGGGCGCTACGGGCTGGCGATGGTACGGCAGAGTGATAACTCATTTGTATTGCTGGCGACACAACGAAATCTACTGACGCTTAACCGTGCtt   <  2:1578794/93‑1 (MQ=255)
                                                                                      tGGGGCGCTACGGGCTGGCGATGGTACGGCAGAGTGATAACTCATTTGTATTGCTGGCGACACAACGAAATCTACTGACGCTTAACCGTGCtt   <  2:4658465/93‑1 (MQ=255)
                                                                                       ggggCGCTCCGGGCTGGCGATGGTACGGCAGAGTGATAACTCATTTGTATTGCTGGCGACACAACGAAATCTACTGACGCTTAACCGTGCTTc  >  1:6538246/1‑93 (MQ=255)
                                                                                       ggggCGCTACGGGCTGGCGATGGTACGGCAGAGTGATAACTCATTTGTATTGCTGGCGACACAACGAAATCTACTGACGCTTAACCGTGCTTc  <  1:5699767/93‑1 (MQ=255)
                                                                                       gggACGCTACGGGCTGGCGATGGTACGGCAGAGTGATAACTCATTTGTATTGCTGGCGACACAACGAAATCTACTGACGCTTAACCGTGCTTc  <  1:6081086/93‑1 (MQ=255)
                                                                                          |                                                                                         
GGCGCGTCGGGTAACGGAAAGCGAACTGGTACAACGCAGCCCATTTATGATGCTGGCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGACGCTACGGGCTGGCGATGGTACGGCAGAGTGATAACTCATTTGTATTGCTGGCGACACAACGAAATCTACTGACGCTTAACCGTGCTTC  >  NC_000913/4108043‑4108222

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
CCTGGCGCGTCGGGTAACGGAAAGCGAACTGGTACAACGCAGCCCATTTATGATGCTGGCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGACGCTACGGGCTGGCGATGGTACGGCAGAGTGATAACTCATTTGTATTGCTGGCGACACAACGAAATCTACTGACGCTTAACCGTGCTTCAGCC  >  NC_000913/4108040‑4108226
                                                                                             |                                                                                             
CCTGGCGCGTCGGGTAACGGAAAGCGAACTGGTACAACGCAGCCCATTTATGATGCTGGCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGG                                                                                               >  SRR4302536.446763/1‑94 (MQ=60)
CCTGGCGCGTCGGGTAACGGAAAGCGAACTGGTACAACGCAGCCCATTTATGATGCTGGCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGG                                                                                               >  SRR4302536.165691/1‑94 (MQ=60)
CCTGGCGCGTCGGGTAACGGAAAGCGAACTGGTACAACGCAGCCCATTTATGATGCTGGCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGG                                                                                               >  SRR4302536.3926444/1‑94 (MQ=60)
 CTGGCGCGTCGGGTAACGGAAAGCGAACTGGTACAACGCAGCCCATTTATGATGCTGGCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGGC                                                                                              <  SRR4302536.1621436/94‑1 (MQ=60)
  TGGCGCGTCGGGTAACGGAAAGCGAACTGGTACAACGCAGCCCATTTATGATGCTGGCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGGCG                                                                                             <  SRR4302536.5435186/94‑1 (MQ=60)
  TGGCGCGTCGGGTAACGGAAAGCGAACTGGTACAACGCAGCCCATTTATGATGCTGGCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGGCG                                                                                             >  SRR4302536.6852979/1‑94 (MQ=60)
    GCGCGTCGGGTAACGGAAAGCGAGCTGGTACAACGCAGCCCATTTATGATGCTGGCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGGCGCT                                                                                           <  SRR4302536.3323415/94‑1 (MQ=60)
     CGCGTCGGGTAACGGAAAGCGAACTGGTACAACGCAGCCCATTTATGATGCTGGCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGGCGCTA                                                                                          <  SRR4302536.851437/94‑1 (MQ=60)
        GTCGGGTAACGGAAAGCGAACTGGTACAACGCAGCCCATTTATGATGCTGGCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGGCGCTACGG                                                                                       >  SRR4302536.3125926/1‑94 (MQ=60)
        GTCGGGTAACGGAAAGCGAACTGGTACAACGCAGCCCATTTATGATGCTGGCAGAAGAAGTACCTGAGGCGCGGCAACATATGGGGCGCTACGG                                                                                       <  SRR4302536.1692242/94‑1 (MQ=60)
        GGCGGGTAACGGAAAGCGAACTGGTACAACGCAGCCCATTTATGATGCTGGCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGGCGCTACGG                                                                                       <  SRR4302536.1375706/94‑1 (MQ=60)
          CGGGTAACGGAAAGCGAACTGGTACAACGCAGCCCATTTATGATGCTGGCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGGCGCTACGGGC                                                                                     >  SRR4302536.1343276/1‑94 (MQ=60)
          CGGGTAACGGAAAGCGAACTGGTACAACGCAGCCCATTTATGATGCTGGCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGGCGCTACGGGC                                                                                     >  SRR4302536.1297350/1‑94 (MQ=60)
           GGGTAACGGAAAGCGAACTGGTACAACGCAGCCCATTTATGATGCTGGCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGGCGCTACGGGCT                                                                                    <  SRR4302536.492078/94‑1 (MQ=60)
           GGGTAACGGAAAGCGAACTGGTACAACGCAGCCCATTTATGATGCTGGCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGGCGCTACGGGCT                                                                                    >  SRR4302536.6881563/1‑94 (MQ=60)
            GGTAACGGAAAGCGAACTGGTACAACGCAGCCCATTTATGATGCTGGCAGAAGAAGTACCTGAGGCGCTGGAACATATGGGGCGCTACGGGCTG                                                                                   <  SRR4302536.6653155/94‑1 (MQ=60)
            GGTAACGGAAAGCGAACTGGTACAACGCAGCCCATTTATGATGCTGGCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGGCGCTACGGGCTG                                                                                   >  SRR4302536.3758141/1‑94 (MQ=60)
            GGTAACGGAAAGCGAACTGGTACAACGCAGCCCATTTATGATGCTGGCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGGCGCTACGGGCTG                                                                                   >  SRR4302536.2257316/1‑94 (MQ=60)
             GTAACGGAAAGCGAACTGGTACAACGCAGCCCATTTATGATGCTGGCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGGCGCTACGGGCTGG                                                                                  <  SRR4302536.3919875/94‑1 (MQ=60)
              TAACGGAAAGCGAACTGGTACAACGCAGCCCATTTATGATGCTGGCAGAAGAAGTACCTGAGGCGCGGGGACATATGGGGCGCTACGGGCTGGC                                                                                 >  SRR4302536.609613/1‑94 (MQ=60)
              TAACGGAAAGCGAACTGGTACAACGCAGCCCATTTATGATGCTGGCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGGCGCTACGGGCTGGG                                                                                 >  SRR4302536.1692193/1‑94 (MQ=60)
              TAACGGAAAGCGAACTGGTACAACGCAGCCCATTTATGATGCTGGCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGGCGCTACGGGCTGGC                                                                                 >  SRR4302536.1450543/1‑94 (MQ=60)
              TAACGGAAAGCGAACTGGTACAACGCAGCCCATTTATGATGCTGGCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGGCGCTACGGGCTGGC                                                                                 <  SRR4302536.1391845/94‑1 (MQ=60)
               AACGGAAAGCGAACTGGTACAACGCAGCCCATTTATGATGCTGGCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGGCGCTACGGGCTGGCG                                                                                <  SRR4302536.6079992/94‑1 (MQ=60)
                ACGGAAAGCGAACTGGTACAACGCAGCCCATTTATGATGCTGGCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGGCGCTACGGGCTGGCGA                                                                               <  SRR4302536.2035740/94‑1 (MQ=60)
                ACGGAAAGCGAACTGGTACAACGCAGCCCATTTATGATGCTGGCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGGCGCTACGGGCTGGCGA                                                                               >  SRR4302536.365168/1‑94 (MQ=60)
                 CGGAAAGCGAACTGGTACAACGCAGCCCATTTATGATGCTGGCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGGCGCTACGGGCTGGCGAT                                                                              <  SRR4302536.2641144/94‑1 (MQ=60)
                 CGGAAAGCGAACTGGTACAACGCAGCCCATTTATGATGCTGGCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGGCGCTACGGGCTGGCGAT                                                                              >  SRR4302536.6489154/1‑94 (MQ=60)
                  GGAAAGCGAACTGGTACAACGCAGCCCATTTATGATGCTGGCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGGCGCTACGGGCTGGCGATG                                                                             <  SRR4302536.378799/94‑1 (MQ=60)
                  GGAAAGCGAACTGGTACAACGCAGCCCATTTATGATGCTGGCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGGCGCTACGGGCTGGCGATG                                                                             <  SRR4302536.5044397/94‑1 (MQ=60)
                  GGAAAGCGAACTGGTACAACGCAGCCCATTTATGATGCTGGCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGGCGCTACGGGCTGGCGATG                                                                             <  SRR4302536.3014853/94‑1 (MQ=60)
                  GGAAAGCGAACTGGTACAACGCAGCCCATTTATGATGCTGGCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGGCGCTACGGGCTGGCGATG                                                                             <  SRR4302536.5171400/94‑1 (MQ=60)
                   GAAAGCGAACTGGTACAACGCAGCCCATTTATGATGCTGGCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGGCGCTACGGGCTGGCGATGG                                                                            <  SRR4302536.1844445/94‑1 (MQ=60)
                   GAAAGCGAACTGGTACAACGCAGCCCATTTATGATGCTGGCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGGCGCTACGGGCTGGCGATGG                                                                            >  SRR4302536.4696948/1‑94 (MQ=60)
                    AAAGCGAACTGGTACAACGCAGCCCATTTATGATGCTGGCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGGCGCTACGGGCTGGCGATGGT                                                                           <  SRR4302536.6701045/94‑1 (MQ=60)
                    AAAGCGAACTGGTACAACGCAGCCCATTTATGATGCTGGCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGGCGCTACGGGCTGGCGATGGT                                                                           >  SRR4302536.6103124/1‑94 (MQ=60)
                     AAGCGAACTGGTACAACGCAGCCCATTTATGATGCTGGCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGGCGCTACGGGCTGGCGATGGTC                                                                          >  SRR4302536.803058/1‑94 (MQ=60)
                     AAGCGAACTGGTACAACGCAGCCCATTTATGATGCTGGCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGGCGCTACGGGCTGGCGATGGTA                                                                          <  SRR4302536.58110/94‑1 (MQ=60)
                     AAGCGAACTGGTACAACGCAGCCCATTTATGATGCTGGCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGGCGCTACGGGCTGGCGATGGTA                                                                          <  SRR4302536.4763942/94‑1 (MQ=60)
                      AGCGAACTGGTACAACGCAGCCCATTTATGATGCTGGCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGGCGCTACGGGCTGGCGATGGTAC                                                                         <  SRR4302536.1776008/94‑1 (MQ=60)
                      AGCGAACTGGTACAACGCAGCCCATTTATGATGCTGGCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGGCGCTACGGGCTGGCGATGGTAC                                                                         <  SRR4302536.2334779/94‑1 (MQ=60)
                       GCGAACTGGTACAACGCAGCCCATTTATGATGCTGGCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGGCGCTACGGGCTGGCGATGGTACG                                                                        <  SRR4302536.1333617/94‑1 (MQ=60)
                        CGAACTGGTACAACGCAGCCCATTTATGATGCTGGCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGGCGCTACGGGCTGGCGATGGTACGG                                                                       <  SRR4302536.5258622/94‑1 (MQ=60)
                        CGAACTGGTACAACGCAGCCCATTTATGATGCTGGCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGGCGCTACGGGCTGGCGATGGTACGG                                                                       >  SRR4302536.3019153/1‑94 (MQ=60)
                         GAACTGGTACAACGCAGCCCATTTATGATGCTGGCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGGCGCTACGGGCTGGCGATGGTACGGC                                                                      >  SRR4302536.421631/1‑94 (MQ=60)
                          AACTGGTACAACGCAGCCCATTTATGATGCTGGCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGGCGCTACGGGCTGGCGATGGTACGGCA                                                                     >  SRR4302536.1748469/1‑94 (MQ=60)
                          AACTGGTACAACGCAGCCCATTTATGATGCTGGCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGGCGCTACGGGCTGGCGATGGTACGGCA                                                                     <  SRR4302536.5951330/94‑1 (MQ=60)
                           ACTGGTACAACGCAGCCCATTTATGATGCTGGCAGAAGAAGTCCCTGAGGCGCGGGAACATATGGGGCGCTACGGGCTGGCGATGGTACGGCAG                                                                    <  SRR4302536.1097768/94‑1 (MQ=60)
                           ACTGGTACAACGCAGCCCATTTATGATGCTGGCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGGCGCTACGGGCTGGCGATGGTACGGCAG                                                                    <  SRR4302536.2226971/94‑1 (MQ=60)
                            CTGGTACAACGCAGCCCATTTATGATGCTGGCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGGCGCTACGGGCTGGCGATGGTACGGCAGA                                                                   <  SRR4302536.2885248/94‑1 (MQ=60)
                            CTGGTACAACGCAGCCCATTTATGATGCTGGCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGGCGCTACGGGCTGGCGATGGTACGGCAGA                                                                   >  SRR4302536.3858808/1‑94 (MQ=60)
                             TGGTACAACGCAGCCCATTTATGATGCTGGCAGAAGAAGTACCTGAGGCGGGGGGACATATGGGGAGCTACGGGCTGGCGATGGTACGGCAGAG                                                                  >  SRR4302536.617538/1‑94 (MQ=60)
                             TGGTACAACGCAGCCCATTTATGATGCTGGCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGGCGCTACGGGCTGGCGATGGTACGGCAGAG                                                                  >  SRR4302536.2493542/1‑94 (MQ=60)
                               GTACAACGCAGCCCATTTATGATGCTGGCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGGCGCTACGGGCTGGCGATGGTACGGCAGAGTG                                                                >  SRR4302536.2318197/1‑94 (MQ=60)
                               GTACAACGCAGCCCATTTATGATGCTGGCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGGCGCTACGGGCTGGCGATGGTACGGCAGAGTG                                                                >  SRR4302536.1692169/1‑94 (MQ=60)
                               GTACAACGCAGCCCATTTATGATGCTGGCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGGCGCTACGGGCTGGCGATGGTACGGCAGAGTG                                                                <  SRR4302536.6558885/94‑1 (MQ=60)
                               GTACAACGCAGCCCATTTATGATGCTGGCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGGCGCTACGGCCTGGCGATGGTACGGCAGAGTG                                                                <  SRR4302536.5466369/94‑1 (MQ=60)
                                 ACAACGCAGCGCATTTATGATGCTGGGAGAAGAAGTACCTGAGGCGCGGGAACATATGGGGCGCTACGGGCTGGCGATGGTACGGCAGAGTGAT                                                              <  SRR4302536.1559266/94‑1 (MQ=60)
                                  CAACGCAGCCCATTTATGATGCTGGCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGGCGCTACGGGCTGGCGATGGTACGGCAGAGTGATA                                                             <  SRR4302536.5638318/94‑1 (MQ=60)
                                  CAACGCAGCCCATTTATGATGCTGGCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGGCGCTACGGGCTGGCGATGGTACGGCAGAGTGATA                                                             >  SRR4302536.6706553/1‑94 (MQ=60)
                                   AACGCAGCCCATTTATGATGCTGGCAGAAGAAGTACCTGAGGCGCGGGACCATATGGGGCGCTACGGGCTGGCGATGGTACGGCAGAGTGATAA                                                            <  SRR4302536.799019/94‑1 (MQ=60)
                                   AACGCAGCCCATTTATGATGCTGGCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGGCGCTACGGGCTGGCGATGGTACGGCAGAGTGATAA                                                            >  SRR4302536.111568/1‑94 (MQ=60)
                                    ACGCAGCCCATTTATGATGCTGGCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGGCGCTACGGGCTGGCGATGGTACGGCAGAGTGATAAC                                                           >  SRR4302536.4602333/1‑94 (MQ=60)
                                     CGCAGCCCATTTATGATGCTGGCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGGCGCTACGGGCTGGCGATGGTACGGCAGAGTGATAACT                                                          >  SRR4302536.6092561/1‑94 (MQ=60)
                                      GCAGCCCATTTATGATGCTGGCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGGCGCTACGGGCTGGCGATGGTACGGCAGAGTGATAACTC                                                         >  SRR4302536.1234146/1‑94 (MQ=60)
                                      GCAGCCCATGTATGATGCTGGCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGGCGCTACGGGCTGGCGATGGTACGGCAGAGTGATAACTC                                                         >  SRR4302536.6739329/1‑94 (MQ=60)
                                       CAGCCCATTTATGATGCACGCAGAAGAAGTACCTGAGGTGCGGGAGCATATGGGGTGCTACGGGCTGGCGgtggctccgctgacgggccagttc                                                        >  SRR4302536.2753551/1‑70 (MQ=44)
                                         GCCCATTTATGATGCTGGCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGGCGCTACGGGCTGGCGATGGTACGGCAGAGTGATAACTCATT                                                      >  SRR4302536.2470036/1‑94 (MQ=60)
                                         GCCCATTTATGATGCTGGCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGGCGCTACGGGCTGGCGATGGTACGGCAGAGTGATAACTCATT                                                      <  SRR4302536.132455/94‑1 (MQ=60)
                                         GCCCATTTATGATGCTGGCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGGCGCTACGGGCTGGCGATGGTACGGCAGAGTGATAACTCATT                                                      <  SRR4302536.6488818/94‑1 (MQ=60)
                                          GCCATTTAGGATGCTGGCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGGCGCTACGGGCTGGCGATGGTACGGCAGAGTGATACCTCATTT                                                     <  SRR4302536.3594356/94‑1 (MQ=60)
                                          CCCATTTATGATGCTGGCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGGCGCTACGGGCTGGCGATGGTACGGCAGAGTGATAACTCATTT                                                     >  SRR4302536.3589675/1‑94 (MQ=60)
                                          CCCATTTATGATGCTGGCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGGCGCTACGGGCTGGCGATGGTACGGCAGAGTGATAACTCATTT                                                     >  SRR4302536.1624786/1‑94 (MQ=60)
                                          CCCATTTATGATGCTGGCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGGCGCTACGGGCTGGCGATGGTACGGCAGAGTGATAACTCATTT                                                     <  SRR4302536.5431939/94‑1 (MQ=60)
                                          CCCATTTATGATGCTGGCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGGCGCTACGGGCTGGCGATGGTACGGCAGAGTGATAACTCATTT                                                     >  SRR4302536.6021947/1‑94 (MQ=60)
                                          CCCATTTATGATGCTGGCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGGCGCTACGGGCTGGCGATGGTACGGCAGAGTGATAACTCATTT                                                     >  SRR4302536.4753723/1‑94 (MQ=60)
                                          CCCATTTATGATGCTGGCAGAAGAAGAACCTGAGGCGCGGGAACATATGGGGCGCTACGGGCTGGCGATGGGACCGCAGAGTGACAACTCATTT                                                     >  SRR4302536.3424704/1‑94 (MQ=60)
                                           CCATTTATGATGCTGGCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGGCGCTACGGGCTGGCGATGGTACGGCAGAGTGATAACTCATTTG                                                    >  SRR4302536.4034530/1‑94 (MQ=60)
                                            CATTTATGATGCTGGCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGGCGCTACGGGCTGGCGATGGTACGGCAGAGTGATAACTCATTTGT                                                   <  SRR4302536.1331072/94‑1 (MQ=60)
                                              TTTATGATGCTGGCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGGCGCTACGGGCTGGCGATGGTACGGCAGAGTGATAACTCATTTGTAT                                                 <  SRR4302536.6147114/94‑1 (MQ=60)
                                              TTTATGATGCTGGCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGGCGCTACGGGCTGGCGATGGTACGGCAGAGTGATAACTCATTTGTAT                                                 <  SRR4302536.2970523/94‑1 (MQ=60)
                                               TTATGATGCTGGCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGGCGCTACGGGCTGGCGATGGTACGGCAGAGTGATAACTCATTTGTATT                                                >  SRR4302536.521417/1‑94 (MQ=60)
                                                TATGATGCTGGCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGGCGCTACGGGCTGGCGATGGTACGGCAGAGTGATAACTCATTTGTATTG                                               <  SRR4302536.4744482/94‑1 (MQ=60)
                                                 ATGATGCTGGCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGGCGCTACGGGCTGGCGATGGTACGGCAGAGTGATAACTCATTTGTATTGC                                              >  SRR4302536.4779878/1‑94 (MQ=60)
                                                 ATGATGCTGGCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGGCGCTACGGGCTGGCGATGGTACGGCAGAGTGATAACTCATTTGTATTGC                                              >  SRR4302536.861078/1‑94 (MQ=60)
                                                  TGATGCTGGCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGGCGCTACGGGCTGGCGATGGTACGGCAGAGTGATAACTCATTTGTATTGCT                                             >  SRR4302536.5494461/1‑94 (MQ=60)
                                                    ATGCTGGCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGGCGCTACGGGCTGGCGATGGTACGGCAGAGTGATAACTCATTTGTATTGCTGG                                           <  SRR4302536.2014964/94‑1 (MQ=60)
                                                      GCTGGCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGGCGCTACGGGCTGGCGATGGTACGGCAGAGTGATAACTCATTTGTATTGCTGGCG                                         <  SRR4302536.6477370/94‑1 (MQ=60)
                                                       CTGGCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGGCGCTACGGGCTGGCGATGGTACGGCAGAGTGATAACTCATTTGTATTGCTGGCGA                                        >  SRR4302536.3545207/1‑94 (MQ=60)
                                                        TGGCAGAAGAAGTACCTGCGGCGCGGGAACATATGGGGCGCTACGGGCTGGCGATGGTACGGCAGAGCGATAACTCATTTGTATTGCTGGCGAC                                       >  SRR4302536.2264954/1‑94 (MQ=60)
                                                        TGGCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGGCGCTACGGGCTGGCGATGGTACGGCAGAGTGATAACTCATTTGTATTGCTGGCGAC                                       >  SRR4302536.1540955/1‑94 (MQ=60)
                                                        TGGCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGGCGCTACGGGCTGGCGATGGTACGGCAGAGTGATAACTCATTTGTATTGCTGGCGAC                                       >  SRR4302536.6530372/1‑94 (MQ=60)
                                                           CAGAAGAAGTACCTGAGGCGCGGGAACATATGGGGCGCTACGGGCTGGCGATGGTACGGCAGAGTGATAACTCATTTGTATTGCTGGCGACACA                                    >  SRR4302536.2271628/1‑94 (MQ=60)
                                                           CAGAAGAAGTACCTGAGGCGCGGGAACATATGGGGCGCTACGGGCTGGCGATGGTACGGCAGAGTGATAACTCATTTGTATTGCTGGCGACACA                                    <  SRR4302536.6038532/94‑1 (MQ=60)
                                                           CAGAAGAAGTACCTGAGGCGCGGGAACATATGGGGCGCTACGGGCTGGCGATGGTACGGCAGAGTGATAACTCATTTGTATTGCTGGCGACACA                                    <  SRR4302536.3401679/94‑1 (MQ=60)
                                                            AGAAGAAGTACCTGAGGCGCGGGAACATATGGGGCGCTACGGGCTGGCGATGGTACGGGAGAGTGATAACTCATTTGTATTGCTGGCGAGACAA                                   >  SRR4302536.1781397/1‑94 (MQ=60)
                                                            AGAAGAAGTACCTGAGGCGCGGGAACATATGGGGCGCTACGGGCTGGCGATGGTACGGCAGAGTGATAACTCATTTGTATTGCTGGCGACACAA                                   >  SRR4302536.4346691/1‑94 (MQ=60)
                                                            AGAAGAAGTACCTGAGGCGCGGGAACATATGGGGCGCTACGGGCTGGCGATGGTACGGCAGAGTGATAACTCATTTGTATTGCTGGCGACACAA                                   <  SRR4302536.6398459/94‑1 (MQ=60)
                                                            AGAAGAAGTACCTGAGGCGCGGGAACATATGGGGCGCTACGGGCTGGCGATGGTACGGCAGAGTGATAACTCATTTGTATTGCTGGCGACACAA                                   >  SRR4302536.2006136/1‑94 (MQ=60)
                                                             GAAGAAGTACCTGAGGCGCGGGAACATATGGGGCGCTACGGGCTGGCGATGGTACGGCAGAGTGATAACTCATTTGTATTGCTGGCGACACAAC                                  >  SRR4302536.2134458/1‑94 (MQ=60)
                                                             GAAGAAGTACCTGAGGCGCGGGAACATATGGGGCGCTACGGGCTGGCGATGGTACGGCAGAGTGATAACTCATTTGTATTGCTGGCGACACAAC                                  <  SRR4302536.2552292/94‑1 (MQ=60)
                                                              AAGAAGTACCTGAGGCGCGGGAACATATGGGGCGCTACGGGCTGGCGATGGTACGGCAGAGTGATAACTCATTTGTATTGCTGGCGACACAACG                                 <  SRR4302536.6829100/94‑1 (MQ=60)
                                                              AAGAAGTACCTGAGGCGCGGGAACATATGGGGCGCTACGGGCTGGCGATGGTACGGCAGAGTGATAACTCATTTGTATTGCTGGCGACACAACG                                 >  SRR4302536.2694730/1‑94 (MQ=60)
                                                              AAGAAGTACCTGAGGCGCGGGAACATATGGGGCGCTACGGGCTGGCGATGGTACGGCAGAGTGATAACTCATTTGTATTGCTGGCGACACAACG                                 >  SRR4302536.5204072/1‑94 (MQ=60)
                                                                  AGTACCTGAGGCGCGGGAACATATGGGGCGCTACGGGCTGGCGATGGTACGGCAGAGTGATAACTCATTTGTATTGCTGGCGACACAACGAAAT                             >  SRR4302536.2053466/1‑94 (MQ=60)
                                                                  AGTACCTGAGGCGCGGGAACATATGGGGCGCTACGGGCTGGCGATGGTACGGCAGAGTGATAACTCATTTGTATTGCTGGCGACACAACGAAAT                             <  SRR4302536.1075221/94‑1 (MQ=60)
                                                                  AGTACCTGAGGCGCGGGAACATATGGGGCGCTACGGGCTGGCGATGGTACGGCAGAGTGATAACTCATTTGTATTGCTGGCGACACAACGAAAT                             <  SRR4302536.702251/94‑1 (MQ=60)
                                                                  AGTACCTGAGGCGCGGGAACATATGGGGCGCTACGGGCTGGCGATGGTACGGCAGAGTGATAACTCATTTGTATTGCTGGCGACACAACGAAAT                             <  SRR4302536.2946671/94‑1 (MQ=60)
                                                                   GTACCTGAGGCGCGGGAACATATGGGGCGCTACGGGCTGGCGATGGTACGGCAGAGTGATAACTCATTTGTATTGCTGGCGACACAACGAAATC                            >  SRR4302536.5909703/1‑94 (MQ=60)
                                                                   GTACCTGAGGCGCGGGAACATATGGGGCGCTACGGGCTGGCGATGGTACGGCAGAGTGATAACTCATTTGTATTGCTGGCGACACAACGAAATC                            >  SRR4302536.6427785/1‑94 (MQ=60)
                                                                    TACCTGAGGCGCGGGAACATATGGGGCGCTACGGGCTGGCGATGGTACGGCAGAGTGATAACTCATTTGTATTGCTGGCGACACAACGAAATCT                           >  SRR4302536.218037/1‑94 (MQ=60)
                                                                      CCTGAGGCGCGGGAACATATGGGGCGCTACGGGCTGGCGATGGTACGGCAGAGTGATAACTCATTTGTATTGCTGGCGACACAACGAAATCTAC                         <  SRR4302536.2086095/94‑1 (MQ=60)
                                                                       CTGAGGCGCGGGAACATATGGGGCGCTACGGGCTGGCGATGGTACGGCAGAGTGATAACTCATTTGTATTGCTGGCGACACAACGAAATCTACT                        >  SRR4302536.5817181/1‑94 (MQ=60)
                                                                       CTGAGGCGCGGGAACATATGGGGCGCTACGGGCTGGCGATGGTACGGCAGAGTGATAACTCATTTGTATTGCTGGCGACACAACGAAATCTACT                        <  SRR4302536.5108287/94‑1 (MQ=60)
                                                                       CTGAGGCGCGGGAACATATGGGGCGCTACGGGCTGGCGATGGGACGGCAGAGTGATAACTCATTTGTATTGCTGGCGACACAACGAAATCTACT                        >  SRR4302536.1744603/1‑94 (MQ=60)
                                                                         GAGGCGCGGGAACATATGGGGCGCTACGGGCTGGCGATGGTACGGCAGAGTGATAACTCATTTGTATTGCTGGCGACACAACGAAATCTACTGA                      <  SRR4302536.311730/94‑1 (MQ=60)
                                                                          AGGCGCGGGAAGATATGGGGCTCTACGGGCTGGCGATGGTACGGCAGAGTGATAACTCATTTGTATTGCTGGCGACACAACGAAATCTACTGAC                     <  SRR4302536.2653281/94‑1 (MQ=60)
                                                                          AGGCGCGGGAACATATGGGGCGCTACGGGCTGGCGATGGTACGGCAGAGGGATAAATCATTTGTATTGCTGGCGACACAACGAAATCTACTGAC                     >  SRR4302536.6105296/1‑94 (MQ=60)
                                                                           GGCGCGGGAGCAGATGGGGCGCTACGCGCTGGTGATGGTACGGCAGAGTGATAGCTCATTTGTATTGCTGGCGACACAACGAAATCTTCTGACG                    <  SRR4302536.3860325/94‑1 (MQ=60)
                                                                           GGCGCGGGAACATATGGGGCGCTACGGGCTGGCGATGGTACGGCAGAGTGATAACTCATTTGTATTGCTGGCGACACAACGAAATCTACTGACG                    >  SRR4302536.6498834/1‑94 (MQ=60)
                                                                             CGCGGGAACATATGGGGCGCTACGGGCTGGCGATGGTACGGCAGAGTGATAACTCATTTGTATTGCTGGCGACACAACGAAATCTACTGACGCT                  >  SRR4302536.2931795/1‑94 (MQ=60)
                                                                              GCGGGAACATATGGGGCGCTACGGGCTGGCGATGGTACGGCAGAGTGATAACTCATTTGTATTGCTGGCGACACAACGAAATCTACTGACGCTT                 >  SRR4302536.6251281/1‑94 (MQ=60)
                                                                              GCGGGAACATATGGGGCGCTACGGGCTGGCGATGGTACGGCAGAGTGATAACTCATTTGTATTGCTGGCGACACAACGAAATCTACTGACGCTT                 <  SRR4302536.3532286/94‑1 (MQ=60)
                                                                              GCGGGAACATATGGGGCGCTACGGGCTGGCGATGGTACGGCAGAGTGATAACTCATTTGTATTGCTGGCGACACAACGAAATCTACTGACGCTT                 <  SRR4302536.3201071/94‑1 (MQ=60)
                                                                               TGGGAACATATGGGGCGCTACGGGCTGGCGATGGTACGGCAGAGTGATAACTCATTTGTATTGCTGGCGACACAACGAAATCTACTGACGCTTA                >  SRR4302536.161016/1‑94 (MQ=60)
                                                                               CGGGAACATATGGGGCGCTACGGGCTGGCGATGGTACGGCAGAGTGATAACTCATTTGTATTGCTGGCGACACAACGAAATCTACTGACGCTTA                >  SRR4302536.1034050/1‑94 (MQ=60)
                                                                               CGGGAACATATGGGGCGCTACGGGCTGGCGATGGTACGGCAGAGTGATAACTCATTTGTATTGCTGGCGACACAACGAAATCTACTGACGCTTA                >  SRR4302536.6142801/1‑94 (MQ=60)
                                                                                GGGAACATATGGGGCGCTACGGGCTGGCGATGGTACGGCAGAGTGATAACTCATTTGTATTGCTGGCGACACAACGAAATCTACTGACGCTTAA               <  SRR4302536.564832/94‑1 (MQ=60)
                                                                                 GGAACATATGGGGCGCTACGGGCTGGCGATGGTACGGCAGAGTGATAACTCATTTGTATTGCTGGCGACACAACGAAATCTACTGACGCTTAAC              <  SRR4302536.4294350/94‑1 (MQ=60)
                                                                                  GAACATATGGGGCGCTACGGGCTGGCGATGGTACGGCAGAGTGATAACTCATTTGTATTGCTGGCGACACAACGAAATCTACTGACGCTTAACC             <  SRR4302536.1878977/94‑1 (MQ=60)
                                                                                  GAACATATGGGGCGCTACGGGCTGGCGATGGTACGGCAGAGTGATAACTCATTTGTATTGCTGGCAACACAACGAAATCTACTGACGCTTAACC             >  SRR4302536.6103299/1‑94 (MQ=60)
                                                                                   AACATATGGGGCGCTACGGGCTGGCGATGGTACGGCAGAGTGATAACTCATTTGTATTGCTGGCGACACAACGAAATCTACTGACGCTTAACCG            >  SRR4302536.3900291/1‑94 (MQ=60)
                                                                                     CATATGGGGCGCTACGGGCTGGCGATGGTACGGCAGAGTGATAACTCATTTGTATTGCTGGCGACACAACGAAATCTACTGACGCTTAACCGTG          <  SRR4302536.4188809/94‑1 (MQ=60)
                                                                                     CATATGGGGCGCTACGGGCTGGCGATGGTACGGCAGAGTGATAACTCATTTGTATTGCTGGCGACACAACGAAATCTACTGACGCTTAACCGTG          <  SRR4302536.167409/94‑1 (MQ=60)
                                                                                       TATGGGGCGCTACGGGCTGGCGATGGTACGGCAGAGTGATAACTCATTTGTATTGCTGGCGACACAACGAAATCTACTGACGCTTAACCGTGCT        >  SRR4302536.2283517/1‑94 (MQ=60)
                                                                                       TATGGGGCGCTACGGGCTGGCGATGGTACGGCAGAGTGATAACTCATTTGTATTGCTGGCGACACAACGAAATCTACTGACGCTTAACCGTGCT        >  SRR4302536.2408434/1‑94 (MQ=60)
                                                                                       TATGGGGCGCTACGGGCTGGCGATGGTACGGCAGAGTGATAACTCATTTGTATTGCTGGCGACACAACGAAATCTACTGACGCTTAACCGTGCT        <  SRR4302536.3418113/94‑1 (MQ=60)
                                                                                        ATGGGGCGCTACGGGCTGGCGATGGTACGGCAGAGTGATAACTCATTTGTATTGCTGGCGACACAACGAAATCTACTGACGCTTAACCGTGCTT       >  SRR4302536.638482/1‑94 (MQ=60)
                                                                                        ATGGGGCGCTACGGGCTGGCGATGGTACGGCAGAGTGATAACTCATTTGTATTGCTGGCGACACAACGAAATCTACTGACGCTTAACCGTGCTT       <  SRR4302536.2771487/94‑1 (MQ=60)
                                                                                         TGGGGCGCTCCGGGCTGGCGATGGTACGGCAGAGTGATAACTCATTTGTATTGCTGGCGACACAACGAAATCTACTGACGCTTAACCGTGCTTC      >  SRR4302536.6732986/1‑94 (MQ=60)
                                                                                          GGGGCGCTACGGGCTGGCGATGGTACGGCAGAGTGATAACTCATTTGTATTGCTGGCGACACAACGAAATCTACTGACGCTTAACCGTGCTTCA     <  SRR4302536.5869237/94‑1 (MQ=60)
                                                                                          GGGGCGCTACGGGCTGGCGATGGTACGGCAGAGTGATAACTCATTTGTATTGCTGGCGACACAACGAAATCTACTGACGCTTAACCGTGCTTCA     <  SRR4302536.1832839/94‑1 (MQ=60)
                                                                                          GGGACGCTACGGGCTGGCGATGGTACGGCAGAGTGATAACTCATTTGTATTGCTGGCGACACAACGAAATCTACTGACGCTTAACCGTGCTTCA     <  SRR4302536.6262477/94‑1 (MQ=60)
                                                                                             GCGCTACGGGCTGGCGATGGTACGGCAGAGTGATAACTCATTTGTATTGCTGGCGACACAACGAAATCTACTGACGCTTAACCGTGCTTCAGCC  <  SRR4302536.4797551/94‑1 (MQ=60)
                                                                                             |                                                                                             
CCTGGCGCGTCGGGTAACGGAAAGCGAACTGGTACAACGCAGCCCATTTATGATGCTGGCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGACGCTACGGGCTGGCGATGGTACGGCAGAGTGATAACTCATTTGTATTGCTGGCGACACAACGAAATCTACTGACGCTTAACCGTGCTTCAGCC  >  NC_000913/4108040‑4108226

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑