Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1475	266.7	13469680	98.2%	13227225	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,216,494	A→G	Y107C (TAC→TGC)	aceK →	isocitrate dehydrogenase kinase/phosphatase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,216,494	0	A	G	100.0%	787.8 / NA	244	Y107C (TAC→TGC)	aceK	isocitrate dehydrogenase kinase/phosphatase
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (113/131); total (113/131)

Only 100 of 249 total aligned reads displayed.

CATTTTTACTACGTGTTAAAGAGCATTACACCCGGCTGTTGCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTACTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCATTCCC  >  NC_000913/4216404‑4216582

cATTTTTACTACGTGTTAAAGAGCATTACACCCGGCTGTTGCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTGCt                                                                                        >  2:3869893/1‑93 (MQ=255)

  tttttACTACGTGTTAAAGAGCATTACACCCGGCTGTTGCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTGCTGt                                                                                      <  1:4141603/93‑1 (MQ=255)

  tttttACTACGTGTTAAAGAGCATTACACCCGGCTGTTGCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTGCTGt                                                                                      <  1:169151/93‑1 (MQ=255)

      tactacGTGTTAAAGAGCATTACACCCGGCTGTTGCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTGCTGTCGGt                                                                                  <  2:2076526/93‑1 (MQ=255)

       actacGTGTTAAAGAGCATTACACCCGGCTGTTGCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTGCTGTCGGtt                                                                                 <  2:6689808/93‑1 (MQ=255)

        ctacGTGTTAAAGAGCATTACACCCGGCTGTTGCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTGCTGTCGGTTa                                                                                >  2:5625186/1‑93 (MQ=255)

          acGTGTTAAAGAGCATTACACCCGGCTGTTGCCGGATTACCCGCGCTTCGCGATTGCGGAGAGCTTTTTTAACTCCGTGTGCTGTCGGTTAtt                                                                              >  1:5449033/1‑93 (MQ=255)

          acGTGTTAAAGAGCATTACACCCGGCTGTTGCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTGCTGTCGGTTAtt                                                                              <  2:553148/93‑1 (MQ=255)

          acGTGTTAAAGAGCATTACACCCGGCTGTTGCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTGCTGTCGGTTAtt                                                                              <  2:1959016/93‑1 (MQ=255)

           cGTGTTAAAGAGCATTACACCCGGCTGTTGCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTGCTGTCGGTTAttt                                                                             <  1:1934224/93‑1 (MQ=255)

            gtgtTAAAGAGCATTACACCCGGCTGTTGCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTGCTGTCGGTTATTTg                                                                            <  2:2548858/93‑1 (MQ=255)

              gtTAAAGAGCATTACACCCGGCTGTTGCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTGCTGTCGGTTATTTGac                                                                          <  2:3710730/93‑1 (MQ=255)

              gtTAAAGAGCATTACACCCGGCTGTTGCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTGCTGTCGGTTATTTGac                                                                          >  2:5345595/1‑93 (MQ=255)

               ttAAAGAGCATTACACCCGGCTGTTGCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTGCTGTCGGTTATTTGacc                                                                         <  1:1173086/93‑1 (MQ=255)

                tAAAGAGCATTACACCCGGCTGTTGCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTGCTGTCGGTTATTTGacca                                                                        <  2:5193052/93‑1 (MQ=255)

                  aaGAGCATTACACCCGGCTGTTGCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTGCTGTCGGTTATTTGaccacc                                                                      >  2:946868/1‑93 (MQ=255)

                   agagCATTACACCCGGCTGTTGCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTGCTGTCGGTTATTTGACCACcg                                                                     >  1:1994147/1‑93 (MQ=255)

                   agagCATTACACCCGGCTGTTGCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTGCTGTCGGTTATTTGACCACcg                                                                     >  1:734809/1‑93 (MQ=255)

                    gagCATTACACCCGGCTGTTGCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTGCTGTCGGTTATTTGACCACcgc                                                                    >  2:2795716/1‑93 (MQ=255)

                    gagCATTACACCCGGCTGTTGCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTGCTGTCGGTTATTTGACCACcgc                                                                    >  2:1329402/1‑93 (MQ=255)

                    gagCATTACACCCGGCTGTTGCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTGCTGTCGGTTATTTGACCACcgc                                                                    <  1:43929/93‑1 (MQ=255)

                    gagCATTACACCCGGCTGTTGCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTGCTGTCGGTTATTTGACCACcgc                                                                    >  1:129610/1‑93 (MQ=255)

                     agCATTACACCCGGCTGTTGCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTGCTGTCGGTTATTTGACCACcgct                                                                   <  1:3577043/93‑1 (MQ=255)

                      gCATTACACCCGGCTGTTGCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTGCTGTCGGTTATTTGACCACcgctc                                                                  >  1:3233174/1‑93 (MQ=255)

                        aTTACACCCGGCTGTTGCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTGCTGTCGGTTATTTGACCACcgctcgc                                                                >  2:787522/1‑93 (MQ=255)

                        aTTACACCCGGCTGTTGCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTGCTGTCGGTTATTTGACCACcgctcgc                                                                >  2:3526320/1‑93 (MQ=255)

                         ttACACCCGGCTGTTGCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTGCTGTCGGTTATTTGACCACcgctcgct                                                               <  1:6671432/93‑1 (MQ=255)

                         ttACACCCGGCTGTTGCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTGCTGTCGGTTATTTGACCACcgctcgct                                                               <  1:5638828/93‑1 (MQ=255)

                            cacCCGGCTGTTGCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTGCTGTCGGTTATTTGACCACCGCTCGCTTAc                                                            <  1:2201524/93‑1 (MQ=255)

                            cacCCGGCTGTTGCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTGCTGTCGGTTATTTGACCACCGCTCGCTTAc                                                            >  2:1494647/1‑93 (MQ=255)

                             acCCGGCTGTTGCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTGCTGTCGGTTATTTGACCACCGCTCGCTTACt                                                           <  1:6216153/93‑1 (MQ=255)

                              cccGGCTGTTGCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTGCTGTCGGTTATTTGACCACCGCTCGCTTACTc                                                          >  1:2332165/1‑93 (MQ=255)

                                cGGCTGTTGCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTGCTGTCGGTTATTTGTCCACCGCTCGCTTACTccc                                                        <  1:6565941/93‑1 (MQ=255)

                                cGGCTGTTGCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTGCTGTCGGTTATTTGACCACCGCTCGCTTACTccc                                                        <  2:600581/93‑1 (MQ=255)

                                cGGCTGTTGCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTGCTGTCGGTTATTTGACCACCGCTCGCTTACTccc                                                        <  1:1828955/93‑1 (MQ=255)

                                cGGCTGTTGCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTGCTGTCGGTTATTTGACCACCGCTCGCTTACTccc                                                        <  1:4048339/93‑1 (MQ=255)

                                 ggCTGTTGCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTGCTGTCGGTTATTTGACCACCGCTCGCTTACTCCCg                                                       <  1:187192/93‑1 (MQ=255)

                                  gCTGTTGCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCATTTTTAACTCCGTGTGCTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGa                                                      <  1:4246960/93‑1 (MQ=255)

                                    tGTTGCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTGCTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGc                                                    >  2:2057046/1‑93 (MQ=255)

                                    tGTTGCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTGCTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGc                                                    >  2:5430656/1‑93 (MQ=255)

                                    tGTTGCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTGCTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGc                                                    <  1:2900858/93‑1 (MQ=255)

                                    tGTTGCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTGCTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGc                                                    <  1:9362/93‑1 (MQ=255)

                                     gTTGCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTGCTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCg                                                   >  1:6446447/1‑93 (MQ=255)

                                     gTTGCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTGCTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCg                                                   >  2:4095859/1‑93 (MQ=255)

                                     gTTGCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTGCTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCg                                                   >  2:1872551/1‑93 (MQ=255)

                                        gCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTGCTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCt                                                <  2:1306589/93‑1 (MQ=255)

                                        gCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTGCTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCt                                                <  2:5450485/93‑1 (MQ=255)

                                        gCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTGCTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCt                                                <  1:1468233/93‑1 (MQ=255)

                                         ccGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTGCTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCtt                                               <  2:658107/93‑1 (MQ=255)

                                            gATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTGCTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCttttt                                            >  2:3467853/1‑93 (MQ=255)

                                             aTTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTGCTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTa                                           <  2:4994282/93‑1 (MQ=255)

                                              ttACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTGCTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTAt                                          <  1:59448/93‑1 (MQ=255)

                                               tACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTGCTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATc                                         >  2:3504537/1‑93 (MQ=255)

                                               tACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTGCTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATc                                         <  1:4604814/93‑1 (MQ=255)

                                                tcccGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTGCTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCt                                        <  2:4728843/92‑1 (MQ=255)

                                                 cccGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTGCTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCtt                                       >  2:1233517/1‑93 (MQ=255)

                                                 cccGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTGCTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCtt                                       <  1:6029033/93‑1 (MQ=255)

                                                  ccGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTGCTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCttt                                      >  1:2798155/1‑93 (MQ=255)

                                                    gcgcTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTGCTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAg                                    <  1:4511761/93‑1 (MQ=255)

                                                    gcgcTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTGCTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAg                                    >  2:5754831/1‑93 (MQ=255)

                                                    gcgcTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTGCTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAg                                    <  2:4292559/93‑1 (MQ=255)

                                                    gcgcTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTGCTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAg                                    <  2:4866931/93‑1 (MQ=255)

                                                       cTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTGCTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGctc                                 <  1:5788340/93‑1 (MQ=255)

                                                       cTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTGCTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGctc                                 <  2:1079847/93‑1 (MQ=255)

                                                       cTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTGCTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGctc                                 <  2:2692151/93‑1 (MQ=255)

                                                       cTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTGCTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGctc                                 <  1:2437302/93‑1 (MQ=255)

                                                        ttCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTGCTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGctct                                <  2:2222583/93‑1 (MQ=255)

                                                        ttCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTGCTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGctct                                >  2:3124761/1‑93 (MQ=255)

                                                        ttCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTGCTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGctct                                >  2:1854493/1‑93 (MQ=255)

                                                          cGAGATTGCGGAGAGCTTTTTTAACTCCGTGTGCTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCa                              <  1:4939367/93‑1 (MQ=255)

                                                           gagaTTGCGGAGAGCTTTTTTAACTCCGTGTGCTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAg                             >  2:5926898/1‑93 (MQ=255)

                                                            agaTTGCGGAGAGCTTTTTTAACTCCGTGTGCTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGc                            >  1:639830/1‑93 (MQ=255)

                                                             gaTTGCGGAGAGCTTTTTTAACTCCGTGTGCTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGcc                           >  1:760879/1‑93 (MQ=255)

                                                             gaTTGCGGAGAGCTTTTTTAACTCCGTGTGCTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGcc                           >  1:331749/1‑93 (MQ=255)

                                                              aTTGCGGAGAGCTTTTTTAACTCCGTGTGCTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCa                          >  2:1652914/1‑93 (MQ=255)

                                                                 gCGGAGAGCTTTTTTAACTCCGTGTGCTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCagag                       <  2:3317638/93‑1 (MQ=255)

                                                                  gggAGAGCTTTTTTAACTCCGTGTGCTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAgc                      <  2:4055397/92‑1 (MQ=255)

                                                                  cGGAGAGCTTTTTTAACTCCGTGTGCTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAgc                      >  1:2856541/1‑93 (MQ=255)

                                                                   tgagaGCTTGTTTAACTCCGGGTGCGTTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAgcg                     <  1:1420026/92‑1 (MQ=255)

                                                                    gagaGCTTTTTTAACTCCGTGTGCTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAgcgc                    >  2:6267765/1‑93 (MQ=255)

                                                                    gagaGCTTTTTTAACTCCGTGTGCTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAgcgc                    >  2:1927893/1‑93 (MQ=255)

                                                                     agagCTTTTTTAACTCCGTGTGCTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGcgcc                   <  1:3793994/93‑1 (MQ=255)

                                                                      gagCTTTTTTAACTCCGTGTGCTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGcgccg                  >  2:4409555/1‑93 (MQ=255)

                                                                        gCTTTTTTAACTCCGTGTGCTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCt                <  2:2388469/93‑1 (MQ=255)

                                                                         cTTTTTTAACTCCGTGTGCTGTCGGTTATTTGACAACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCtt               <  2:2885966/93‑1 (MQ=255)

                                                                            ttttACCTCCGTGTGCTGTCGGTTATTGGACCNCCNCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCg            <  1:5103945/93‑1 (MQ=255)

                                                                            ttttAACTCCGTGTGCTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCg            <  2:2203257/93‑1 (MQ=255)

                                                                               tAACTCCGTGTGCTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTAc         >  1:2079822/1‑93 (MQ=255)

                                                                                aaCTCCGTGTGCTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATTTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTAcc        >  2:920758/1‑93 (MQ=255)

                                                                                aaCTCCGTGTGCTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTAcc        >  1:2505566/1‑93 (MQ=255)

                                                                                aaCTCCGTGTGCTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTAcc        <  1:2741995/93‑1 (MQ=255)

                                                                                 aCTCCGTGTGCTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCa       <  1:4837440/93‑1 (MQ=255)

                                                                                 aCTCCGTGTGCTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCa       >  2:5580277/1‑93 (MQ=255)

                                                                                 aCTCCGTGTGCTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCa       <  1:1501345/93‑1 (MQ=255)

                                                                                  cTCCGTGTGCTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCAt      <  1:6252152/93‑1 (MQ=255)

                                                                                   tCCGTGTGCTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCAtt     >  2:2618313/1‑93 (MQ=255)

                                                                                    ccGTGTGCTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCATTc    <  2:1411713/93‑1 (MQ=255)

                                                                                     cGTGTGCTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCATTcc   <  2:5292586/93‑1 (MQ=255)

                                                                                      gtgtGCTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCATTccc  >  2:1739147/1‑93 (MQ=255)

                                                                                      gtgtGCTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCATTccc  >  2:2357156/1‑93 (MQ=255)

CATTTTTACTACGTGTTAAAGAGCATTACACCCGGCTGTTGCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTACTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCATTCCC  >  NC_000913/4216404‑4216582

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CGGCATTTTTACTACGTGTTAAAGAGCATTACACCCGGCTGTTGCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTACTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCATTCCCCGCCC  >  NC_000913/4216401‑4216587

CGGCATTTTTACTACGTGTTAAAGAGCATTACACCCGGCTGTTGCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTG                                                                                               >  SRR4302536.5019885/1‑94 (MQ=60)

CGGCATTTTTACTACGTGTTAAAGAGCATTACACCCGGCTGTTGCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTG                                                                                               <  SRR4302536.2754826/94‑1 (MQ=60)

CGGCATTTTTACTACGTGTTAAAGAGCATTACACCCGGCTGTTGCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTG                                                                                               <  SRR4302536.2079797/94‑1 (MQ=60)

  GCATTTTTACTACGTGTTAAAGAGCATTACACCCGGCTGTTGCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTGCT                                                                                             <  SRR4302536.5282645/94‑1 (MQ=60)

   CATTTTTACTACGTGTTAAAGAGCATTACACCCGGCTGTTGCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTGCTG                                                                                            <  SRR4302536.633038/94‑1 (MQ=60)

    ATTTTTACTACGTGTTAAAGAGCATTACACCCGGCTGTTGCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTGCTGT                                                                                           >  SRR4302536.3178820/1‑94 (MQ=60)

     TTTTTACTACGTGTTAAAGAGCATTACACCCGGCTGTTGCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTGCTGTC                                                                                          <  SRR4302536.4264455/94‑1 (MQ=60)

     TTTTTACTACGTGTTAAAGAGCATTACACCCGGCTGTTGCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTGCTGTC                                                                                          <  SRR4302536.173563/94‑1 (MQ=60)

      TTTTACTACGTGTTAAAGAGCATTACACCCGGCTGTTGCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTGCTGTCG                                                                                         <  SRR4302536.5058729/94‑1 (MQ=60)

      TTTTACTACGTGTTAAAGAGCATTACACCCGGCTGTTGCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTGCTGTCA                                                                                         <  SRR4302536.6099163/94‑1 (MQ=60)

        TTACTACGTGTTAAAGAGCATTACACCCGGCTGTTGCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTGCTGTCGGT                                                                                       >  SRR4302536.6893660/1‑94 (MQ=60)

           CTACGTGTTAAAGAGCATTACACCCGGCTGTTGCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTGCTGTCGGTTAT                                                                                    >  SRR4302536.1495369/1‑94 (MQ=60)

           CTACGTGTTAAAGAGCATTACACCCGGCTGTTGCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTGCTGTCGGTTAT                                                                                    >  SRR4302536.5497707/1‑94 (MQ=60)

            TACGTGTTAAAGAGCATTACACCCGGCTGTTGCCGGATTACCCGCGCTTCGCGATTGCGGAGAGCTTTTTTAACTCCGTGTGCTGTCGGTTATT                                                                                   >  SRR4302536.5612041/1‑94 (MQ=60)

             ACGTGTTAAAGAGCATTACACCCGGCTGTTGCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTGCTGTCGGTTATTT                                                                                  <  SRR4302536.4623732/94‑1 (MQ=60)

              CGTGTTAAAGAGCATTACACCCGGCTGTTGCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTGCTGTCGGTTATTTG                                                                                 <  SRR4302536.1992386/94‑1 (MQ=60)

                 GTTAAAGAGCATTACACCCGGCTGTTGCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTGCTGTCGGTTATTTGACA                                                                              >  SRR4302536.4866240/1‑94 (MQ=60)

                  TTAAAGAGCATTACACCCGGCTGTTGCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTGCTGTCGGTTATTTGACCA                                                                             <  SRR4302536.1208379/94‑1 (MQ=60)

                   TAAAGAGCATTACACCCGGCTGTTGCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTGCTGTCGGTTATTTGACCAC                                                                            <  SRR4302536.1643696/94‑1 (MQ=60)

                   TAAAGAGCATTACACCCGGCTGTTGCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTGCTGTCGGTTATTTGACCAC                                                                            >  SRR4302536.1226414/1‑94 (MQ=60)

                    AAAGAGCATTACACCCGGCTGTTGCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTGCTGTCGGTTATTTGACCACC                                                                           >  SRR4302536.296847/1‑94 (MQ=60)

                     AAGAGCATTACACCCGGCTGTTGCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTGCTGTCGGTTATTTGACCACCG                                                                          >  SRR4302536.2054141/1‑94 (MQ=60)

                     AAGAGCATTACACCCGGCTGTTGCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTGCTGTCGGTTATTTGACCACCG                                                                          >  SRR4302536.756353/1‑94 (MQ=60)

                      AGAGCATTACACCCGGCTGTTGCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTGCTGTCGGTTATTTGACCACCGC                                                                         >  SRR4302536.1993590/1‑94 (MQ=60)

                      AGAGCATTACACCCGGCTGTTGCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTGCTGTCGGTTATTTGACCACCGC                                                                         >  SRR4302536.133024/1‑94 (MQ=60)

                      AGAGCATTACACCCGGCTGTTGCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTGCTGTCGGTTATTTGACCACCGC                                                                         >  SRR4302536.5710086/1‑94 (MQ=60)

                       GAGCATTACACCCGGCTGTTGCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTGCTGTCGGTTATTTGACCACCGCT                                                                        <  SRR4302536.45147/94‑1 (MQ=60)

                        AGCATTACACCCGGCTGTTGCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTGCTGTCGGTTATTTGACCACCGCTC                                                                       <  SRR4302536.2923137/94‑1 (MQ=60)

                        AGCATTACACCCGGCTGTTGCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTGCTGTCGGTTATTTGACCACCGCTC                                                                       >  SRR4302536.3327953/1‑94 (MQ=60)

                        AGCATTACACCCGGCTGTTGCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTGCTGTCGGTTATTTGACCACCGCTC                                                                       <  SRR4302536.3684002/94‑1 (MQ=60)

                         GCATTACACCCGGCTGTTGCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTGCTGTCGGTTATTTGACCACCGCTCG                                                                      <  SRR4302536.1424993/94‑1 (MQ=60)

                          CATTACACCCGGCTGTTGCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCCTTTTTAACTCCGTGTGCTGTCGGTTATTTGACCACCGATCGC                                                                     >  SRR4302536.472626/1‑94 (MQ=60)

                            TTACACCCGGCTGTTGCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTGCTGTCGGTTATTTGACCACCGCTCGCTT                                                                   <  SRR4302536.5806352/94‑1 (MQ=60)

                            TTACACCCGGCTGTTGCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTGCTGTCGGTTATTTGACCACCGCTCGCTT                                                                   >  SRR4302536.2578676/1‑94 (MQ=60)

                            TTACACCCGGCTGTTGCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTGCTGTCGGTTATTTGACCACCGCTCGCTT                                                                   <  SRR4302536.6869663/94‑1 (MQ=60)

                              ACACCCGGCTGTTGCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTGCTGTCGGTTATTTGACCACCGCTCGCTTAC                                                                 <  SRR4302536.4350487/94‑1 (MQ=60)

                               CACCCGGCTGTTGCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTGCTGTCGGTTATTTGACCACCGCTCGCTTACT                                                                <  SRR4302536.2267985/94‑1 (MQ=60)

                               CACCCGGCTGTTGCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTGCTGTCGGTTATTTGACCACCGCTCGCTTACT                                                                <  SRR4302536.3035258/94‑1 (MQ=60)

                               CACCCGGCTGTTGCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTGCTGTCGGTTATTTGACCACCGCTCGCTTACT                                                                >  SRR4302536.6666318/1‑94 (MQ=60)

                                ACCCGGCTGTTGCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTGCTGTCGGTTATTTGACCACCGCTCGCTTACTC                                                               >  SRR4302536.2402928/1‑94 (MQ=60)

                                ACCCGGCTGTTGCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTGCTGTCGGTTATTTGACCACCGCTCGCTTACTC                                                               <  SRR4302536.6401388/94‑1 (MQ=60)

                                ACCCGGCTGTTGCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTGCTGTCGGTTATTTGACCACCGCTCGCTTACTC                                                               >  SRR4302536.6528350/1‑94 (MQ=60)

                                 CCCGGCTGTTGCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTGCTGTCGGTTATTTGACCACCGCTCGCTTACTCC                                                              <  SRR4302536.4683338/94‑1 (MQ=60)

                                  CCGGCTGTTGCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTGCTGTCGGTTATTTGACCACCGCTCGCTTACTCCC                                                             >  SRR4302536.2424247/1‑94 (MQ=60)

                                   CGGCTGTTGCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTGCTGTCGGTTATTTGTCCACCGCTCGCTTACTCCCG                                                            <  SRR4302536.6761373/94‑1 (MQ=60)

                                   CGGCTGTTGCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTGCTGTCGGTTATTTGACCACCGCTCGCTTACTCCCG                                                            <  SRR4302536.1884103/94‑1 (MQ=60)

                                   CGGCTGTTGCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTGCTGTCGGTTATTTGACCACCGCTCGCTTACTCCCG                                                            <  SRR4302536.4168333/94‑1 (MQ=60)

                                    GGCTGTTGCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTGCTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGA                                                           <  SRR4302536.192129/94‑1 (MQ=60)

                                    GGCTGTTGCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTGCTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGA                                                           <  SRR4302536.723744/94‑1 (MQ=60)

                                     GCTGTTGCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCATTTTTAACTCCGTGTGCTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAG                                                          <  SRR4302536.4373458/94‑1 (MQ=60)

                                      CTGTTGCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTGCTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGC                                                         >  SRR4302536.2357093/1‑94 (MQ=60)

                                       TGTTGCCGGCTTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTGCTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCG                                                        >  SRR4302536.6728324/1‑94 (MQ=60)

                                       TGTTGCCGGATTCCCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTGCTGTCGGTTATTTGACCCCCGCTCGCTTACTCCCGAGCG                                                        <  SRR4302536.2069658/94‑1 (MQ=60)

                                       TGTTGCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTGCTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCG                                                        >  SRR4302536.6775770/1‑94 (MQ=60)

                                       TGTTGCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTGCTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCG                                                        >  SRR4302536.6639039/1‑94 (MQ=60)

                                       TGTTGCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTGCTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCG                                                        <  SRR4302536.9630/94‑1 (MQ=60)

                                       TGTTGCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTGCTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCG                                                        <  SRR4302536.2986459/94‑1 (MQ=60)

                                        GTTGCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTGCTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGG                                                       <  SRR4302536.2205229/94‑1 (MQ=60)

                                          TGCGGGATTGCCCGCGCTCCGAGATTGCGGAGAGTTTTTTGACCTCCGTGTGCTGTCCGTTATTGCACCACCGCTCGCTTACTCCCGAGCGGCT                                                     <  SRR4302536.113093/94‑1 (MQ=44)

                                          TGCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTGCTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCT                                                     >  SRR4302536.6064924/1‑94 (MQ=60)

                                           GCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTGCTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTT                                                    <  SRR4302536.1511668/94‑1 (MQ=60)

                                           GCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTGCTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTT                                                    <  SRR4302536.6145714/94‑1 (MQ=60)

                                              tgagTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTGCTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTT                                                 <  SRR4302536.6435735/90‑1 (MQ=60)

                                               GATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTGCTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTA                                                <  SRR4302536.2756485/94‑1 (MQ=60)

                                                 TTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTGCTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATC                                              <  SRR4302536.61093/94‑1 (MQ=60)

                                                 TTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTGCTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATC                                              <  SRR4302536.3561687/94‑1 (MQ=60)

                                                  TACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTGCTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCT                                             <  SRR4302536.1514007/94‑1 (MQ=60)

                                                  TACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTGCTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCT                                             <  SRR4302536.4743108/94‑1 (MQ=60)

                                                    CCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTGCTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTT                                           <  SRR4302536.6208801/94‑1 (MQ=60)

                                                    CCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTGCTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTT                                           >  SRR4302536.2881143/1‑94 (MQ=60)

                                                      CGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTGCTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAG                                         <  SRR4302536.1876562/94‑1 (MQ=60)

                                                      CGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTGCTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAG                                         <  SRR4302536.2844553/94‑1 (MQ=60)

                                                       GCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTGCTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGC                                        <  SRR4302536.4647100/94‑1 (MQ=60)

                                                        CGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTGCTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCT                                       >  SRR4302536.76747/1‑94 (MQ=60)

                                                        CGCGTCGAGATTGCGGAGAGCTTTTTTACCTCCGTGTGCTGTCGGTTATTTGCCCGCCGCGCGCTGGCTCCCGAGCTGCGTTTTATCTTTAGCT                                       <  SRR4302536.5770823/94‑1 (MQ=44)

                                                          CTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTGCTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCT                                     <  SRR4302536.2510988/94‑1 (MQ=60)

                                                          CTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTGCTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCT                                     >  SRR4302536.2890644/1‑94 (MQ=60)

                                                          CTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTGCTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCT                                     <  SRR4302536.5960659/94‑1 (MQ=60)

                                                            TCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTGCTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCA                                   >  SRR4302536.2183765/1‑94 (MQ=60)

                                                             CGAGATTGCGGAGAGCTTTTTTAACTCCGTGTGCTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAG                                  <  SRR4302536.6623722/94‑1 (MQ=60)

                                                             CGAGATTGCGGAGAGCTTTTTTAACTCCGTGTGCTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAG                                  <  SRR4302536.5087801/94‑1 (MQ=60)

                                                              GAGATTGCGGAGAGCTTTTTTAACTCCGTGTGCTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGC                                 >  SRR4302536.6302195/1‑94 (MQ=60)

                                                              GAGATTGCGGAGAGCTTTTTTAACTCCGTGTGCTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGC                                 >  SRR4302536.658711/1‑94 (MQ=60)

                                                              GAGATTGCGGAGAGCTTTTTTAACTCCGTGTGCTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGC                                 <  SRR4302536.2707202/94‑1 (MQ=60)

                                                               AGATTGCGGAGAGCTTTTTTAACTCCGTGTGCTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCC                                >  SRR4302536.783188/1‑94 (MQ=60)

                                                               AGATTGCGGAGAGCTTTTTTAACTCCGTGTGCTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCC                                >  SRR4302536.3516276/1‑94 (MQ=60)

                                                               AGATTGCGGAGAGCTTTTTTAACTCCGTGTGCTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCC                                >  SRR4302536.340557/1‑94 (MQ=60)

                                                                   TGCGGAGAGCTTTTTTAACTCCGTGTGCTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAG                            >  SRR4302536.3408856/1‑94 (MQ=60)

                                                                   TGCGGAGAGCTGTTTTACGTCCGGGTGCTGCCGGTTATTTGACCACCGCTCGCTTCCTCCCGAGCGGCTTATTATCTTTAGCTGTCAGGCAGAG                            <  SRR4302536.6192591/94‑1 (MQ=42)

                                                                    GCGGAGAGCTTTTTTAACTCCGTGTGCTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGC                           >  SRR4302536.2940992/1‑94 (MQ=60)

                                                                    GCGGAGAGCTTTTTTAACTCCGTGTGCTGTCGATTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGC                           <  SRR4302536.3240245/94‑1 (MQ=60)

                                                                     CGGAGAGCTTTTTTAACTCCGTGTGCTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCG                          >  SRR4302536.4863791/1‑94 (MQ=60)

                                                                      TGAGAGCTTGTTTAACTCCGGGTGCGTTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGC                         <  SRR4302536.1462238/94‑1 (MQ=60)

                                                                      GGAGAGCTTTTTTAACTCCGTGTGCTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGC                         <  SRR4302536.4249765/94‑1 (MQ=60)

                                                                      GGAGAGCTTTTTTAACTCCGTGTGCTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCGTTAGCTCTCAGCCAGAGCGG                         >  SRR4302536.191895/1‑94 (MQ=60)

                                                                       GAGAGCTTTTTTAACTCCGTGTGCTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCC                        >  SRR4302536.3907539/1‑94 (MQ=60)

                                                                       GAGAGCTTTTTTAACTCCGTGTGCTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCC                        >  SRR4302536.4601351/1‑94 (MQ=60)

                                                                        AGAGCTTTTTTAACTCCGTGTGCTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCG                       >  SRR4302536.5619129/1‑94 (MQ=60)

                                                                        AGAGCTTTTTTAACTCCGTGTGCTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCG                       >  SRR4302536.2052045/1‑94 (MQ=60)

                                                                        AGAGCTTTTTTAACTCCGTGTGCTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCG                       <  SRR4302536.3907166/94‑1 (MQ=60)

                                                                         GAGCTTTTTTAACTCCGTGTGCTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGC                      >  SRR4302536.1978470/1‑94 (MQ=60)

                                                                          AGCTTTTTTAACTCCGTGTGCTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCT                     <  SRR4302536.439717/94‑1 (MQ=60)

                                                                            CTTTTTTATCTCCGTGTGCTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTT                   <  SRR4302536.4287939/94‑1 (MQ=60)

                                                                            CTTTTTTAACTCCGTGTGCTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTT                   <  SRR4302536.805998/94‑1 (MQ=60)

                                                                             TTTTTTAACTCCGTGTGCTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTC                  <  SRR4302536.4026133/94‑1 (MQ=60)

                                                                               TTTTAGCTCCGTGTGCTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGT                <  SRR4302536.5841325/94‑1 (MQ=60)

                                                                               TTTTACCTCCGTGTGCTGTCGGTTATTGGACCNCCNCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGT                <  SRR4302536.5256525/94‑1 (MQ=60)

                                                                               TTTTAACTCCGTGTGCTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGT                >  SRR4302536.3767478/1‑94 (MQ=60)

                                                                                TTTAACTCCGTGTGCTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTA               <  SRR4302536.1885263/94‑1 (MQ=60)

                                                                                 TTAACTCCGTGTGCTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTAC              >  SRR4302536.2142450/1‑94 (MQ=60)

                                                                                 TTAACTCCGTGTGCTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTAC              <  SRR4302536.1507183/94‑1 (MQ=60)

                                                                                  TAACTCCGTGTGCTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACC             >  SRR4302536.2581116/1‑94 (MQ=60)

                                                                                   AACTCCGTGTGCTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCA            <  SRR4302536.2823681/94‑1 (MQ=60)

                                                                                    ACTCCGTGTGCTGTCGGTTATTTGACTACCGCTCGCTTACTCCCGAGCAACTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCAT           <  SRR4302536.4768470/94‑1 (MQ=60)

                                                                                    ACTCCGTGTGCTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCAT           <  SRR4302536.4983041/94‑1 (MQ=60)

                                                                                    ACTCCGTGTGCTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCAT           <  SRR4302536.1545624/94‑1 (MQ=60)

                                                                                     CTCCGTGTGCTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCATT          >  SRR4302536.2481925/1‑94 (MQ=60)

                                                                                     CTCCGTGTGCTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCATT          <  SRR4302536.845681/94‑1 (MQ=60)

                                                                                     CTCCGTGTGCTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCATT          <  SRR4302536.6438409/94‑1 (MQ=60)

                                                                                       CCGTGTGCTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCATTCC        >  SRR4302536.5201485/1‑94 (MQ=60)

                                                                                       CAGTGTGCTGTCGGTTATTTGCCCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCATTCC        <  SRR4302536.5098084/94‑1 (MQ=60)

                                                                                        CGTGTGCTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCATTCCC       >  SRR4302536.1713290/1‑94 (MQ=60)

                                                                                        CGTGTGCTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCATTCCC       >  SRR4302536.6545492/1‑94 (MQ=60)

                                                                                           GTGCTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCATTCCCCGC    >  SRR4302536.3138572/1‑94 (MQ=60)

                                                                                             GCTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCATTCCCCGCCC  >  SRR4302536.3348956/1‑94 (MQ=60)

                                                                                             GCTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCATTCCCCGCCC  >  SRR4302536.65527/1‑94 (MQ=60)

                                                                                             GCTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCATTCCCCGCCC  <  SRR4302536.2808042/94‑1 (MQ=60)

CGGCATTTTTACTACGTGTTAAAGAGCATTACACCCGGCTGTTGCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTACTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCATTCCCCGCCC  >  NC_000913/4216401‑4216587

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 21 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`