Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1475	266.7	13469680	98.2%	13227225	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,261,143	T→C	E223G (GAA→GGA)	qor ←	quinone oxidoreductase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,261,143	0	T	C	100.0%	819.7 / NA	255	E223G (GAA→GGA)	qor	quinone oxidoreductase
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (116/139); total (116/139)

Only 100 of 268 total aligned reads displayed.

AGAATGCCTAAGTTCACACCGGTAACCGCACCTGATGAGTTGCCAAAACTGACCATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTTCCCAGGTGTCTCTGCCCACGGAATCGTACACCACGCGCACTTTCTTACCGCCGGTGATCTCTTTTAACCGCTCGACCAGATCCTCTTCA  >  NC_000913/4261053‑4261232

agaATGCCTAAGTTCACACCGGTAACCGCACCTGATGAGTTGCCAAAACTGACCATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTccc                                                                                         <  2:5839701/93‑1 (MQ=255)

agaATGCCTAAGTTCACACCGGTAACCGCACCTGATGAGTTGCCAAAACTGACCATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTccc                                                                                         <  1:3064096/93‑1 (MQ=255)

 gaATGCCTAAGTTCACACCGGTAACCGCACCTGATGAGTTGCCAAAACTGACCATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTcccc                                                                                        <  1:4041469/93‑1 (MQ=255)

  aaTGCCTAAGTTCACACCGGTAACCGCACCTGATGAGTTGCCAAACCTGACCATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTCCCCa                                                                                       <  2:3728410/93‑1 (MQ=255)

  aaTGCCTAAGTTCACACCGGTAACCGCACCTGATGAGTTGCCAAAACTGACCATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTCCCCa                                                                                       <  1:3419661/93‑1 (MQ=255)

  aaTGCCTAAGTTCACACCGGTAACCGCACCTGATGAGTTGCCAAAACTGACCATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTCCCCa                                                                                       <  1:379240/93‑1 (MQ=255)

   aTGCCTAAGTTCACACCGGTAACCGCACCTGATGAGTTGCCAAAACTGACCATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTCCCCAg                                                                                      <  2:1749295/93‑1 (MQ=255)

    tGCCTAAGTTCACACCGGTAACCGCACCTGATGAGTTGCCAAAACTGACCATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTCCCCAgg                                                                                     >  2:5006163/1‑93 (MQ=255)

    tGCCTAAGTTCACACCGGTAACCGCACCTGATGAGTTGCCAAAACTGACCATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTCCCCAgg                                                                                     >  1:723908/1‑93 (MQ=255)

        tAAGTTCACACCGGTAACCGCACCTGATGAGTTGCCAAAACTGACCATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTCCCCAGGTGtc                                                                                 >  1:6462608/1‑93 (MQ=255)

          aGTTCACACCGGTAACCGCACCTGATGAGTTGCCAAAACTGACCATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTCCCCAGGTGtctc                                                                               >  2:4877341/1‑93 (MQ=255)

          aGTTCACACCGGTAACCGCACCTGATGAGTTGCCAAAACTGACCATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTCCCCAGGTGtctc                                                                               >  2:5646579/1‑93 (MQ=255)

          aGTTCACACCGGTAACCGCACCTGATGAGTTGCCAAAACTGACCATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTCCCCAGGTGtctc                                                                               <  1:4438782/93‑1 (MQ=255)

           gTTCACACCGGTAACCGCACCTGATGAGTTGCCAAAACTGACCATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTCCCCAGGTGTctct                                                                              <  2:5560975/93‑1 (MQ=255)

           gTTCACACCGGTAACCGCACCTGATGAGTTGCCAAAACTGACCATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTCCCCAGGTGTctct                                                                              <  1:1303894/93‑1 (MQ=255)

           gTTCACACCGGTAACCGCACCTGATGAGTTGCCAAAACTGACCATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTCCCCAGGTGTctct                                                                              <  2:4006945/93‑1 (MQ=255)

               acacCGGTAACCGCACCTGATGAGTTGCCAAAACTGACCATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTCCCCAGGTGTCTCTGccc                                                                          >  1:547163/1‑93 (MQ=255)

                cacCGGTATCCGCACCTGATGAGTTGCCAAAACTGACCATTAAGCGGCGGCGTTGCAGGCAATCCAGCGACCGTCCCCAGGTGTCTCTTCCCa                                                                         <  1:5886325/93‑1 (MQ=255)

                cacCGGTAACCGCACCTGATGAGTTGCCAAAACTGACCATTAAGCCGCGGCGTTGCTGGCAATCCAGCGACCGTCCCCAGGTGTCTCTGCCCa                                                                         <  2:6708581/93‑1 (MQ=255)

                    ggTAACCGCACCTGATGAGTTGCCAAAACTGACCATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTCCCCAGGTGTCTCTGCCCACGGa                                                                     <  1:2713778/93‑1 (MQ=255)

                     gTACCCGCACCTGATGAGTTGCCAAAACTGACCATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTCCCCAGGTGTCTCTGCCCACGGaa                                                                    <  1:1026716/93‑1 (MQ=255)

                     gTAACCGCACCTGATGAGTTGCCAAAACTGACCATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTCCCCAGGTGTCTCTGCCCACGGaa                                                                    <  2:3553377/93‑1 (MQ=255)

                     gTAACCGCACCTGATGAGTTGCCAAAACTGACCATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTCCCCAGGTGTCTCTGCCCACGGaa                                                                    <  2:478977/93‑1 (MQ=255)

                      tAACCGCACCTGATGAGTTGCCAAAACTGACCATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTCCCCAGGTGTCTCTGCCCACGGAAt                                                                   <  1:259252/93‑1 (MQ=255)

                       aaCCGCACCTGATGAGTTGCCAAAACTGACCATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTCCCCAGGTGTCTCTGCCCACGGAATc                                                                  >  2:4281659/1‑93 (MQ=255)

                       aaCCGCACCTGATGAGTTGCCAAAACTGACCATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTCCCCAGGTGTCTCTGCCCACGGAATc                                                                  >  1:1176822/1‑93 (MQ=255)

                        aCCGCACCTGATGAGTTGCCAAAACTGACCATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTCCCCAGGTGTCTCTGCCCACGGAATCg                                                                 >  1:3930306/1‑93 (MQ=255)

                         ccGCACCTGATGAGTTGCCAAAACTGACCATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTCCCCAGGTGTCTCTGCCCACGGAATCGt                                                                >  1:6134571/1‑93 (MQ=255)

                         ccGCACCTGATGAGTTGCCAAAACTGACCATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTCCCCAGGTGTCTCTGCCCACGGAATCGt                                                                >  2:5816845/1‑93 (MQ=255)

                          cGCACCTGATGAGTTGCCAAAACTGACCATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTCCCCAGGTGTCTCTGCCCACGGAATCGTa                                                               >  2:6167948/1‑93 (MQ=255)

                           gCACCTGATGAGTTGCCAAAACTGACCATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTCCCCAGGTGTCTCTGCCCACGGAATCGTac                                                              <  2:1123874/93‑1 (MQ=255)

                           gCACCTGATGAGTTGCCAAAACTGACCATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTCCCCAGGTGTCTCTGCCCACGGAATCGTac                                                              <  2:3376345/93‑1 (MQ=255)

                            cACCTGATGAGTTGCCAAAACTGACCATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTCCCCAGGTGTCTCTGCCCACGGAATCGTaca                                                             <  1:635471/93‑1 (MQ=255)

                            cACCTGATGAGTTGCCAAAACTGACCATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTCCCCAGGTGTCTCTGCCCACGGAATCGTaca                                                             >  1:5831252/1‑93 (MQ=255)

                            cACCTGATGAGTTGCCAAAACTGACCATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTCCCCAGGTGTCTCTGCCCACGGAATCGTaca                                                             >  1:493456/1‑93 (MQ=255)

                            cACCTGATGAGTTGCCAAAACTGACCATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTCCCCAGGTGTCTCTGCCCACGGAATCGTaca                                                             >  1:4179041/1‑93 (MQ=255)

                            cACCTGATGAGTCGCCAAAACTGACCATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTCCCCAGGTGTCTCTGCCCACGGAATCGTaca                                                             <  2:5753861/93‑1 (MQ=255)

                             aCCTGATGAGTTGCCAAAACTGACCATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTCCCCAGGTGTCTCTGCCCACGGAATCGTacac                                                            <  1:4615208/93‑1 (MQ=255)

                             aCCTGATGAGTTGCCAAAACTGACCATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTCCCCAGGTGTCTCTGCCCACGGAATCGTacac                                                            >  1:5382602/1‑93 (MQ=255)

                               cTGATGAGTTGCCAAAACTGACCATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTCCCCAGGTGTCTCTGCCCACGGAATCGTAcacca                                                          >  1:4891905/1‑93 (MQ=255)

                               cTGATGAGTTGCCAAAACTGACCATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTCCCCAGGTGTCTCTGCCCACGGAATCGTAcacca                                                          >  2:5100359/1‑93 (MQ=255)

                               cTGATGAGTTGCCAAAACTGACCATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTCCCCAGGTGTCTCTGCCCACGGAATCGTAcacca                                                          <  2:4188660/93‑1 (MQ=255)

                               cTGATGAGTTGCCAAAACTGACCATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTCCCCAGGTGTCTCTGCCCACGGAATCGTAcacca                                                          >  2:1581854/1‑93 (MQ=255)

                               cTGATGAGTTGCCAAAACTGACCATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTCCCCAGGTGTCTCTGCCCACGGAATCGTAcacca                                                          <  2:1358339/93‑1 (MQ=255)

                                    gaGTTGCCAAAACTGACCATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTCCCCAGGTGTCTCTGCCCACGGAATCGTACACCACgcgc                                                     <  2:5262036/93‑1 (MQ=255)

                                      gTTGCCAAAACTGACCATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTCCCCAGGTGTCTCTGCCCACGGAATCGTACACCACGCGCAc                                                   >  1:1223014/1‑93 (MQ=255)

                                      gTTGCCAAAACTGACCATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTCCCCAGGTGTCTCTGCCCACGGAATCGTACACCACGCGCAc                                                   >  1:1427483/1‑93 (MQ=255)

                                      gTTGCCAAAACTGACCATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTCCCCAGGTGTCTCTGCCCACGGAATCGTACACCACGCGCAc                                                   >  1:2772231/1‑93 (MQ=255)

                                          ccAAAACTGACCATTAAGCCGCGGCGTTGGAGGCAATCCAGCGACCGTCCCCAGGTGTCTCTGCCCACGGAATCGTACACCACGCGCACTTTc                                               >  2:2286413/1‑93 (MQ=255)

                                          ccAAAACTGACCATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTCCCCAGGTGTCTCTGCCCACGGAATCGTACACCACGCGCACTTTc                                               >  1:1069350/1‑93 (MQ=255)

                                           cAAAACTGACCATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTCCCCAGGTGTCTCTGCCCACGGAATCGTACACCACGCGCACTTTCt                                              >  2:1271988/1‑93 (MQ=255)

                                           cAAAACTGACCATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTCCCCAGGTGTCTCTGCCCACGGAATCGTACACCACGCGCACTTTCt                                              <  1:3478665/93‑1 (MQ=255)

                                             aaaCTGACCATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTCCCCAGGTGTCTCTGCCCACGGAATCGTACACCACGCGCACTTTCTTa                                            >  1:4092917/1‑93 (MQ=255)

                                             aaaCTGACCATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTCCCCAGGTGTCTCTGCCCACGGAATCGTACACCACGCGCACTTTCTTa                                            >  2:6442135/1‑93 (MQ=255)

                                              aaCTGACCATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTCCCCAGGTGTCTCTGCCCACGGAATCGTACACCACGCGCACTTTCTTAc                                           <  1:5664699/93‑1 (MQ=255)

                                              aaCTGACCATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTCCCCAGGTGTCTCTGCCCACGGAATCGTACACCACGCGCACTTTCTTAc                                           <  1:1400565/93‑1 (MQ=255)

                                              aaCTGACCATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTCCCCAGGTGTCTCTGCCCACGGAATCGTACACCACGCGCACTTTCTTAc                                           <  2:2353496/93‑1 (MQ=255)

                                                 tGACCATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTCCCCAGGTGTCTCTGCCCACGGAATCGTACACCACGCGCACTTTCTTAccgc                                        >  1:3845041/1‑93 (MQ=255)

                                                  gACCATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTCCCCAGGTGTCTCTGCCCACGGAATCGTACACCACGCGCACTTTCTTAccgcc                                       >  1:5160950/1‑93 (MQ=255)

                                                  gACCATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTCCCCAGGTGTCTCTGCCCACGGAATCGTACACCACGCGCACCTTCTTAccgcc                                       >  1:3314140/1‑93 (MQ=255)

                                                   aCCATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTCCCCAGGTGTCTCTGCCCACGGAATCGTACACCACGCGCACTTTCTTAccgccg                                      <  1:3165499/93‑1 (MQ=255)

                                                   aCCATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTCCCCAGGTGTCTCTGCCCACGGAATCGTACACCACGCGCACTTTCTTAccgccg                                      >  1:2182039/1‑93 (MQ=255)

                                                    ccATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTCCCCAGGTGTCTCTGCCCACGGAATCGTACACCACGCGCACTTTCTTACCGCCgg                                     >  2:4453928/1‑93 (MQ=255)

                                                     cATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTCCCCAGGTGTCTCTGCCCACGGAATCGTACACCACGCGCACTTTCTTACCGCCGGt                                    >  2:6006772/1‑93 (MQ=255)

                                                     cATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTCCCCAGGTGTCTCTGCCCACGGAATCGTACACCACGCGCACTTTCTTACCGCCGGt                                    <  2:1918821/93‑1 (MQ=255)

                                                      aTTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTCCCCAGGTGTCTCTGCCCACGGAATCGTACACCACGCGCACTTTCTTACCGCCGGTg                                   >  2:2524287/1‑93 (MQ=255)

                                                      aTTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTCCCCAGGTGTCTCTGCCCACGGAATCGTACACCACGCGCACTTTCTTACCGCCGGTg                                   >  2:5947217/1‑93 (MQ=255)

                                                       ttAAGCCGCGGCTTTGCAGGCAATCCAGCGACCGTCCCCAGGTGTCTCTGCCCACGGAATCGTACACCACGCGCACTTTCTTACCGCCGGTGa                                  <  1:1513679/93‑1 (MQ=255)

                                                       ttAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTCCCCAGGTGTCTCTGCCCACGGAATCGTACACCACGCGCACTTTCTTACCGCCGGTGa                                  <  1:952714/93‑1 (MQ=255)

                                                       ttAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTCCCCAGGTGTCTCTGCCCACGGAATCGTACACCACGCGCACTTTCTTACCGCCGGTGa                                  <  1:3466432/93‑1 (MQ=255)

                                                           gCCGCGGCGTTGCAGGCAATCCAGCGACCGTCCCCAGGTGTCTCTGCCCACGGAATCGTACACCACGCGCACTTTCTTACCGCCGGTGAtctc                              <  2:6391901/93‑1 (MQ=255)

                                                           gCCGCGGCGTTGCAGGCAATCCAGCGACCGTCCCCAGGTGTCTCTGCCCACGGAATCGTACACCACGCGCACTTTCTTACCGCCGGTGAtctc                              <  1:5649201/93‑1 (MQ=255)

                                                            ccGCGGCGTTACAGGCAATCCAGCGACCGTCCCCAGGTGTCTCTGCCCACGGAATCGTACACCACGCGCACTTTCTTTCCGCCGGTGATctct                             <  1:6548650/93‑1 (MQ=255)

                                                             cgcgGCGTTGCAGGCAATCCAGCGACCGTCCCCAGGTGTCTCTGCCCACGGAATCGTACACCACGCGCACTTTCTTACCGCCGGTGATCTCtt                            <  1:2968529/93‑1 (MQ=255)

                                                              gcggcgTTGCAGGCAATCCAGCGACCGTCCCCAGGTGTCTCTGCCCACGGAATCGTACACCACGCGCACTTTCTTACCGCCGGTGATCTCttt                           >  2:2098458/1‑93 (MQ=255)

                                                                 gcgTTGCAGGCAATCCAGCGACCGTCCCCAGGTGTCTCTGCCCACGGAATCGTACACCACGCGCACTTTCTTACCGCCGGTGATCTCTTTTaa                        <  1:1723383/93‑1 (MQ=255)

                                                                   gTTGCAGGCAATCCAGCGACCGTCCCCAGGTGTCTCTGCCCACGGAATCGTACACCACGCGCACTTTCTTACCGCCGGTGATCTCTTTTAAcc                      >  1:686295/1‑93 (MQ=255)

                                                                    ttGCAGGCAATCCAGCGACCGTCCCCAGGTGTCTCTGCCCACGGAATCGTACACCACGCGCACTTTCTTACCGCCGGTGATCTCTTTTAACCg                     <  1:5000456/93‑1 (MQ=255)

                                                                      gCAGGCAATCCAGCGACCGTCCCCAGGTGTCTCTGCCCACGGAATCGTACACCACGCGCACTTTCTTACCGCCGGTGATCTCTTTTAACCGCt                   >  2:2854174/1‑93 (MQ=255)

                                                                       cAGGCAATCCAGCGACCGTCCCCAGGTGTCTCTGCCCACGGAATCGTACACCACGCGCACTTTCTTACCGCCGGTGATCTCTTTTAACCGCTc                  <  2:3122806/93‑1 (MQ=255)

                                                                       cAGGCAATCCAGCGACCGTCCCCAGGTGTCTCTGCCCACGGAATCGTACACCACGCGCACTTTCTTACCGCCGGTGATCTCTTTTAACCGCTc                  <  1:5288603/93‑1 (MQ=255)

                                                                         ggCAATCCAGCGACCGTCCCCAGGTGTCTCTGCCCACGGAATCGTACACCACGCGCACTTTCTTACCGCCGGTGATCTCTTTTAACCGCTCGa                <  1:1982723/93‑1 (MQ=255)

                                                                          gCAATCCAGCGACCGTCCCCAGGTGTCTCTGCCCACGGAATCGTACACCACGCGCACTTTCTTACCGCCGGTGATCTCTTTTAACCGCTCGAc               <  1:3235007/93‑1 (MQ=255)

                                                                            aaTCCAGCGACCGTCCCCAGGTGTCTCTGCCCACGGAATCGTACACCACGCGCACTTTCTTACCGCCGGTGATCTCTTTTAACCGCTCGACCa             >  1:13270/1‑93 (MQ=255)

                                                                             aTCCAGCGACCGTCCCCAGGTGTCTCTGCCCACGGAATCGTACACCACGCGCACTTTCTTACCGCCGGTGATCTCTTTTAACCGCTCGACCAg            >  1:6253086/1‑93 (MQ=255)

                                                                             aTCCAGCGACCGTCCCCAGGTGTCTCTGCCCACGGAATCGTACACCACGCGCACTTTCTTACCGCCGGTGATCTCTTTTAACCGCTCGACCAg            >  2:1460039/1‑93 (MQ=255)

                                                                             aTCCAGCGACCGTCCCCAGGTGTCTCTGCCCACGGAATCGTACACCACGCGCACTTTCTTACCGCCGGTGATCTCTTTTAACCGCTCGACCAg            >  2:3897391/1‑93 (MQ=255)

                                                                             aTCCAGCGACCGTCCCCAGGTGTCTCTGCCCACGGAATCGTACACCACGCGCACTTTCTTACCGCCGGTGATCTCTTTTAACCGCTCGACCAg            <  2:3233777/93‑1 (MQ=255)

                                                                              tCCAGCGACCGTCCCCAGGTGTCTCTGCCCACGGAATCGTACACCACGCGCACTTTCTTACCGCCGGTGATCTCTTTTAACCGCTCGACCAGa           <  2:3652870/93‑1 (MQ=255)

                                                                               ccAGCGACCGTCCCCAGGTGTCTCTGCCCACGGAATCGTACACCACGCGCACTTTCTTACCGCCGGTGATCTCTTTTAACCGCTCGACCAGAt          <  2:2260362/93‑1 (MQ=255)

                                                                               ccAGCGACCGTCCCCAGGTGTCTCTGCCCACGGAATCGTACACCACGCGCACTTTCTTACCGCCGGTGATCTCTTTTAACCGCTCGACCAGAt          >  1:4684974/1‑93 (MQ=255)

                                                                                cAGCGACCGTCCCCAGGTGTCTCTGCCCACGGAATCGTACACCACGCGCACTTTCTTACCGCCGGTGATCTCTTTTAACCGCTCGACCAGATc         <  1:1546345/93‑1 (MQ=255)

                                                                                 aGCGACCGTCCCCAGGTGTCTCTGCCCACGGAATCGTACACCACGCGCACTTTCTTACCGCCGGTGATCTCTTTTAACCGCTCGACCAGATcc        >  1:2388097/1‑93 (MQ=255)

                                                                                  gCGACCGTCCCCAGGTGTCTCTGCCCACGGAATCGTACACCACGCGCACTTTCTTACCGCCGGTGATCTCTTTTAACCGCTCGACCAGATCct       >  1:5937453/1‑93 (MQ=255)

                                                                                   cGACCGTCCCCAGGTGTCTCTGCCCACGGAATCGTACACCACGCGCACTTTCTTACCGCCGGTGATCTCTTTTAACCGCTCGACCAGATCctc      <  1:2908076/93‑1 (MQ=255)

                                                                                    gACCGTCCCCAGGTGTCTCTGCCCACGGAATCGTACACCACGCGCACTTTCTTACCGCCGGTGATCTCTTTTAACCGCTCGACCAGATCctct     <  2:5064146/93‑1 (MQ=255)

                                                                                    gACCGTCCCCAGGTGTCTCTGCCCACGGAATCGTACACCACGCGCACTTTCTTACCGCCGGTGATCTCTTTTAACCGCTCGACCAGATCctct     <  2:4145149/93‑1 (MQ=255)

                                                                                    gACCGTCCCCAGGTGTCTCTGCCCACGGAATCGTACACCACGCGCACTTTCTTACCGCCGGTGATCTCTTTTAACCGCTCGACCAGATCctct     <  2:2553388/93‑1 (MQ=255)

                                                                                     aCCGTCCCCAGGTGTCTCTGCCCACGGAATCGTACACCACGCGCACTTTCTTACCGCCGGTGATCTCTTTTAACCGCTCGACCAGATCCTCtt    <  1:2133553/93‑1 (MQ=255)

                                                                                       cGTCCCCAGGTGTCTCTGCCCACGGAATCGTACACCACGCGCACTTTCTTACCGCCGGTGATCTCTTTTAACCGCTCGACCAGATCCTCTTCa  >  2:2375934/1‑93 (MQ=255)

AGAATGCCTAAGTTCACACCGGTAACCGCACCTGATGAGTTGCCAAAACTGACCATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTTCCCAGGTGTCTCTGCCCACGGAATCGTACACCACGCGCACTTTCTTACCGCCGGTGATCTCTTTTAACCGCTCGACCAGATCCTCTTCA  >  NC_000913/4261053‑4261232

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

TGAGAATGCCTAAGTTCACACCGGTAACCGCACCTGATGAGTTGCCAAAACTGACCATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTTCCCAGGTGTCTCTGCCCACGGAATCGTACACCACGCGCACTTTCTTACCGCCGGTGATCTCTTTTAACCGCTCGACCAGATCCTCTTCACGAT  >  NC_000913/4261051‑4261236

tgacaaggcgTAAGTTCACACCGGTACGCGCACCTGATGAGTTGCCAAAACTGACCATCAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTCC                                                                                              <  SRR4302536.3210600/84‑1 (MQ=60)

TGAGAATGCCTAAGTTCACACCGGTAACCGCACCTGATGAGTTGCCAAAACTGACCATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTCC                                                                                              <  SRR4302536.431365/94‑1 (MQ=60)

TGAGAATGCCTAAGTTCACACCGGTAACCGCACCTGATGAGTTGCCAAAACTGACCATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTCC                                                                                              <  SRR4302536.3485802/94‑1 (MQ=60)

  AGAATGCCTAAGTTCACACCGGTAACCGCACCTGATGAGTTGCCAAAACTGACCCTTACGCCGCGGCGTTGCAGGCAATCCCGCGACCGTCCCC                                                                                            >  SRR4302536.5367573/1‑94 (MQ=60)

  AGAATGCCTAAGTTCACACCGGTAACCGCACCTGATGAGTTGCCAAAACTGACCATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTCCCC                                                                                            <  SRR4302536.3153960/94‑1 (MQ=60)

    AATGCCTAAGTTCACACCGGTAACCGCACCTGATGAGTTGCCAAAACTGACCATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTCCCCAG                                                                                          >  SRR4302536.3056817/1‑94 (MQ=60)

    AATGCCTAAGTTCACACCGGTAACCGCACCTGATGAGTTGCCAAAACTGACCATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTCCCCAG                                                                                          <  SRR4302536.389231/94‑1 (MQ=60)

    AATGCCTAAGTTCACACCGGTAACCGCACCTGATGAGTTGCCAAAACTGACCATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTCCCCAG                                                                                          <  SRR4302536.1470538/94‑1 (MQ=60)

    AATGCCTAAGTTCACACCGGTAACCGCACCTGATGAGTTGCCAAAACTGACCATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTCCCCAG                                                                                          <  SRR4302536.3521441/94‑1 (MQ=60)

     ATGCCTAAGTTCACACCGGTAACCGCACCTGATGAGTTGCCAAAACTGACCATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACGGTCCCCAGG                                                                                         <  SRR4302536.1351809/94‑1 (MQ=60)

     ATGCCTAAGTTCACACCGGTAACCGCACCTGATGAGTTGCCAAAACTGACCATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTCCCCAGG                                                                                         <  SRR4302536.1806106/94‑1 (MQ=60)

     ATGCCTAAGTTCACACCGGTAACCGCACCTGATGAGTTGCCAAAACTGACCATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTCCCCAGG                                                                                         >  SRR4302536.745089/1‑94 (MQ=60)

     ATGCCTAAGTTCACACCGGTAACCGCACCTGATGAGTTGCCAAAACTGACCATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTCCCCAGG                                                                                         >  SRR4302536.3538098/1‑94 (MQ=60)

      TGCCTAAGTTCACACCGGTAACCGCACCTGATGAGTTGCCAAAACTGACCATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTCCCCAGGT                                                                                        <  SRR4302536.3409453/94‑1 (MQ=60)

       GCCTAAGTTCACACCGGTAACCGCACCTGATGAGTTGCCAAAACTGACCATTAAGCTGCGGCGTTGCAGGCAATCCAGCGACCGTCCCCAGGTG                                                                                       <  SRR4302536.3920685/94‑1 (MQ=60)

       GCCTAAGTTCACACCGGTAACCGCACCTGATGAGTTGCCAAAACTGACCATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTCCCCAGGTG                                                                                       >  SRR4302536.719174/1‑94 (MQ=60)

       GCCTAAGTTCACACCGGTAACCGCACCTGATGAGTTGCCAAAACTGACCATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTCCCCAGGTG                                                                                       <  SRR4302536.3185448/94‑1 (MQ=60)

       GCCTAAGTTCACACCGGTAACCGCACCTGATGAGTTGCCAAAACTGACCATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTCCCCAGGTG                                                                                       >  SRR4302536.298475/1‑94 (MQ=60)

       GCCTAAGTTCACACCGGTAACCGCACCTCATGAGTTGCCAAAACTGACCATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTCCCCAGGTG                                                                                       <  SRR4302536.6229910/94‑1 (MQ=60)

        CCTAAGTTCACACCGGTAACCGCACCTGATGAGTTGCCAAAACTGACCATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTCCCCAGGTGT                                                                                      <  SRR4302536.6013062/94‑1 (MQ=60)

         CTAAGTTNACACCGGTAACCGCACCTGATGAGTTGCCAAAACTGACCATTAAGCCGCGGCGTTGNNGNNNNTCCAGCGACCGTNCNNAGGGNTC                                                                                     >  SRR4302536.2363725/1‑94 (MQ=60)

         CTAAGTTCACACCGGTAACCGCACCTGATGAGTTGCCAAAACTGACCATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTCCCCAGGTGTT                                                                                     >  SRR4302536.4036127/1‑94 (MQ=60)

         CTAAGTTCACACCGGTAACCGCACCTGATGAGTTGCCAAAACTGACCATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTCCCCAGGTGTC                                                                                     >  SRR4302536.6655524/1‑94 (MQ=60)

         CTAAGTTCACACCGGTAACCGCACCTGATGAGTTGCCAAAACTGACCATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTCCCCAGGTGTC                                                                                     >  SRR4302536.2815271/1‑94 (MQ=60)

          TAAGTTCACACCGGTAACCGCACCTGATGAGTTGCCAAAACTGACCATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTCCCCAGGTGTCT                                                                                    <  SRR4302536.3840674/94‑1 (MQ=60)

            AGTTCACACCGGTAACCGCACCTGATGAGTTGCCAAAACTGACCATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTCCCCAGGTGTCTCT                                                                                  >  SRR4302536.4163739/1‑94 (MQ=60)

            AGTTCACACCGGTAACCGCACCTGATGAGTTGCCAAAACTGACCATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTCCCCAGGTGTCTCT                                                                                  <  SRR4302536.5004855/94‑1 (MQ=60)

            AGTTCACACCGGTAACCGCACCTGATGAGTTGCCAAAACTGACCATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTCCCCAGGTGTCTCT                                                                                  <  SRR4302536.4572017/94‑1 (MQ=60)

            AGTTAACACGGGTAACCGCACCTGATGAGTTGCCAAAACTGACCATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTCCCCAGGTGTCTCT                                                                                  <  SRR4302536.4798006/94‑1 (MQ=60)

             GTTCACACCGGTAACCGCACCTGATGAGTTGCCAAAACTGACCATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTCCCCAGGTGTCTCTG                                                                                 <  SRR4302536.1643863/94‑1 (MQ=60)

             GTTCACACCGGTAACCGCACCTGATGAGTTGCCAAAACTGACCATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTCCCCAGGTGTCTCTG                                                                                 >  SRR4302536.6487655/1‑94 (MQ=60)

             GTTCACACCGGTAACCGCACCTGATGAGTTGCCAAAACTGACCATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTCCCCAGGTGTCTCTG                                                                                 <  SRR4302536.1342833/94‑1 (MQ=60)

             GTTCACACCGGTAACCGCACCTGATGAGTTGCCAAAACTGACCATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTCCCCAGGTGTCTCTG                                                                                 >  SRR4302536.1522510/1‑94 (MQ=60)

               TCACACCGGTAACCGCACCTGATGAGTTGCCAAAACTGACCATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTCCCCAGGTGTCTCTGCC                                                                               >  SRR4302536.664705/1‑94 (MQ=60)

               TCACACCGGTAACCGCACCTGATGAGTTGCCAAAACTGACCATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTCCCCAGGTGTCTCTGCC                                                                               <  SRR4302536.3945844/94‑1 (MQ=60)

                CACACCGGTAACCGCACCTGATGAGTTGCCAAAACTGACCATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTCCCCAGGTGTCTCTGCCC                                                                              >  SRR4302536.561123/1‑94 (MQ=60)

                  CACCGGTATCCGCACCTGATGAGTTGCCAAAACTGACCATTAAGCGGCGGCGTTGCAGGCAATCCAGCGACCGTCCCCAGGTGTCTCTTCCCAC                                                                            <  SRR4302536.6061631/94‑1 (MQ=60)

                    CCGGTAACCGCACCTGATGAGTTGCCAAAACTGACCATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTCCCCAGGTGTCTCTGCCCACGG                                                                          >  SRR4302536.2210680/1‑94 (MQ=60)

                      GGTAACCGCACCTGATGAGTTGCCAAAACTGACCATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTCCCCAGGTGTCTCTGCCCACGGAA                                                                        >  SRR4302536.4501304/1‑94 (MQ=60)

                      GGTAACCGCACCTGATGAGTTGCCAAAACTGACCATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTCCCCAGGTGTCTCTGCCCACGGAA                                                                        <  SRR4302536.2794726/94‑1 (MQ=60)

                      GGTAACCGCACCTGATGAGTTGCCAAAACTGACCATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTCCCCAGGTGTCTCTGCCCACGGAA                                                                        >  SRR4302536.5331376/1‑94 (MQ=60)

                       GTACCCGCACCTGATGAGTTGCCAAAACTGACCATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTCCCCAGGTGTCTCTGCCCACGGAAT                                                                       <  SRR4302536.1057133/94‑1 (MQ=60)

                        TAGCCGCACCTGATGAGTTGCCAAAACTGACCATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGGCCCCAGGTTTCTCTGCCCACGGAATC                                                                      <  SRR4302536.3112321/94‑1 (MQ=60)

                        TAACCGCACCTGATGAGTTGCCAAAACTGACCATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTCCCCAGGTGTCTCTGCCCACGGAATC                                                                      <  SRR4302536.266175/94‑1 (MQ=60)

                        TAACCGCACCTGATGAGTTGCCAAAACTGACCATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTCCCCAGGTGTCTCTGCCCACGGAATC                                                                      <  SRR4302536.157256/94‑1 (MQ=60)

                        TAACCGCACCTGATGAGTTGCCAAAACTGACCATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTCCCCAGGTGTCTCTGCCCACGGAATC                                                                      >  SRR4302536.5082005/1‑94 (MQ=60)

                        TAACCGCACCTGATGAGTTGCCAAAACTGACCATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTCCCCAGGTGTCTCTGCCCACGGAATC                                                                      >  SRR4302536.1212250/1‑94 (MQ=60)

                        GAACCGCCCCTGATGAGTTGCCAAAACTGACCATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTCCCCAGGTGTCTCTGCCCACGGAATC                                                                      <  SRR4302536.2389273/94‑1 (MQ=60)

                         AACCGCACCTGATGAGTTGCCAAAACTGACCATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTCCCCAGGTGTCTCTGCCCACGGAATCG                                                                     >  SRR4302536.4047081/1‑94 (MQ=60)

                         AACCGCACCTGATGAGTTGCCAAAACTGACCATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTCCCCAGGTGTCTCTGCCCACGGAATCG                                                                     <  SRR4302536.6541735/94‑1 (MQ=60)

                          ACCGCACCTGATGAGTTGCCAAAACTGACCATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTCCCCAGGTGTCTCTGCCCACGGAATCGT                                                                    >  SRR4302536.6317392/1‑94 (MQ=60)

                           CCGCCCCTGATGAGTTGCCAAAACTGACCATTAAGCCGCGGCGTTGCAGGCAATCCGGCGACCGTCCCCAGGTGTCTCTGCCCACGGAATCGTA                                                                   <  SRR4302536.5817945/94‑1 (MQ=60)

                           CCGCACCTGATGAGTTGCCAAAACTGACCATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTCCCCAGGTGTCTCTGCCCACGGAATCGTA                                                                   <  SRR4302536.5227639/94‑1 (MQ=60)

                           CCGCACCTGATGAGTTGCCAAAACTGACCATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTCCCCAGGTGTCTCTGCCCACGGAATCGTA                                                                   <  SRR4302536.6380234/94‑1 (MQ=60)

                           CCGCACCTGATGAGTTGCCAAAACTGACCATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTCCCCAGGTGTCTCTGCCCACGGAATCGTA                                                                   <  SRR4302536.1084507/94‑1 (MQ=60)

                           CCGCACCTGATGAGTTGCCAAAACTGACCATTAAGCAGCGGCGTTGCAGGCAATCCAGCGACCGTCCCCAGGTGTCTCTGCCCACGGAATCGTA                                                                   <  SRR4302536.1222700/94‑1 (MQ=60)

                            CGCACCTGATGAGTTGCCAAAACTGACCATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTCCCCAGGTGTCTCTGCCCACGGAATCGTAC                                                                  >  SRR4302536.5297573/1‑94 (MQ=60)

                             GCATCTGATGAGTTGCCAAAACTGACCATTAAGCCGCGGCGTTGCAGGCAATCGAGCGACCGTCCCCAGGTGTCTCTGCCCACGGAATCGTACA                                                                 <  SRR4302536.5623030/94‑1 (MQ=60)

                             GCACCTGATGAGTTGCCAAAACTGACCATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTCCCCAGGTGTCTCTGCCCACGGAATCGTACA                                                                 >  SRR4302536.6004999/1‑94 (MQ=60)

                             GCACCTGATGAGTTGCCAAAACTGACCATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTCCCCAGGTGTCTCTGCCCACGGAATCGTACA                                                                 >  SRR4302536.601372/1‑94 (MQ=60)

                             GCACCTGATGAGTTGCCAAAACTGACCATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTCCCCAGGTGTCTCTGCCCACGGAATCGTACA                                                                 >  SRR4302536.4303175/1‑94 (MQ=60)

                             GCACCTGATGAGTTGCCAAAACTGACCATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTCCCCAGGTGTCTCTGCCCACGGAATCGTACA                                                                 >  SRR4302536.506218/1‑94 (MQ=60)

                              CACCTGATGAGTTGCCAAAACTGACCATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTCCCCAGGTGTCTCTGCCCACGGAATCGTACAC                                                                <  SRR4302536.654253/94‑1 (MQ=60)

                              CACCTGATGAGTTGCCAAAACTGACCATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTCCCCAGGTGTCTCTGCCCACGGAATCGTACAC                                                                >  SRR4302536.5543254/1‑94 (MQ=60)

                               ACCTGATGAGTTGCCAAAACTGACCATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTCCCCAGGTGTCTCTGCCCACGGAATCGTACACC                                                               <  SRR4302536.4753843/94‑1 (MQ=60)

                                CCTGATGAGTTGCCAAAACTGACCATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTCCCCAGGTGTCTCTGCCCACGGAATCGTACACCC                                                              >  SRR4302536.6689575/1‑94 (MQ=60)

                                CCTGATGAGTTGCCAAAACTGACCATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTCCCCAGGTGTCTCTGCCCACGGAATCGTACACCA                                                              >  SRR4302536.5039052/1‑94 (MQ=60)

                                CCTGATGAGTTGCCAAAACTGACCATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTCCCCAGGTGTCTCTGCCCACGGAATCGTACACCA                                                              >  SRR4302536.33984/1‑94 (MQ=60)

                                 CTGATGAGTTGCCAAAACTGACCATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTCCCCAGGTGTCTCTGCCCACGGAATCGTACACCAC                                                             <  SRR4302536.3455807/94‑1 (MQ=60)

                                 CTGATGAGTTGCCAAAACTGACCATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTCCCCAGGTGTCTCTGCCCACGGAATCGTACACCAC                                                             <  SRR4302536.2656087/94‑1 (MQ=60)

                                 CTGATGAGTTGCCAAAACTGACCATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTCCCCAGGTGTCTCTGCCCACGGAATCGTACACCAC                                                             >  SRR4302536.858378/1‑94 (MQ=60)

                                  TGATGAGTTGCCAAAACTGACCATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTCCCCAGGTGTCTCTGCCCACGGAATCGTACACCACG                                                            >  SRR4302536.675099/1‑94 (MQ=60)

                                   GATGAGTTGCCAAAACTGACCATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTCCCCAGGTGTCTCTGCCCACGGAATCGTACACCACGC                                                           <  SRR4302536.5883893/94‑1 (MQ=60)

                                    ATGAGTTGCCAAAACTGACCATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTCCCCAGGTGTCTCTGCCCACGGAATCGTACACCACGCG                                                          <  SRR4302536.6088241/94‑1 (MQ=60)

                                    ATGAGTTGCCAAAACTGACCATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTCCCCAGGTGTCTCTGCCCACGGAATCGTACACCACGCG                                                          >  SRR4302536.3536896/1‑94 (MQ=60)

                                    ATGAGTTGCCAAAACTGACCATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTCCCCAGGTGTCTCTGCCCACGGAATCGTACACCACGCG                                                          <  SRR4302536.1340458/94‑1 (MQ=60)

                                       AGTTGCCAAAACTGACCATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTCCCCAGGTGTCTCTGCCCACGGAATCGTACACCACGCGCAC                                                       >  SRR4302536.1259773/1‑94 (MQ=60)

                                       AGTTGCCAAAACTGACCATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTCCCCAGGTGTCTCTGCCCACGGAATCGTACACCACGCGCAC                                                       >  SRR4302536.1469889/1‑94 (MQ=60)

                                       AGTTGCCAAAACTGACCATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTCCCCAGGTGTCTCTGCCCACGGAATCGTACACCACGCGCAC                                                       >  SRR4302536.2725782/1‑94 (MQ=60)

                                       AGTTGCCAAAACTGACCATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTCCCCAGGTGTCTCTGCCCACGGAATCGTACACCACGCGCAC                                                       >  SRR4302536.2854636/1‑94 (MQ=60)

                                           GCCAAAACTGACCATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTCCCCAGGTGTCTCTGCCCACGGAATCGTACACCACGCGCACTTTC                                                   >  SRR4302536.1101327/1‑94 (MQ=60)

                                           GCCAAAACTGACCATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTCCCCAGGTGTCTCTGCCCACGGAATCGTACACCACGCGCACTTTC                                                   <  SRR4302536.2192220/94‑1 (MQ=60)

                                            CCAAAACTGACCATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTCCCCAGGTGTCTCTGCCCACGGAATCGTACACCACGCGCACTTTCT                                                  <  SRR4302536.2282186/94‑1 (MQ=60)

                                             CAAAACTGACCATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTCCCCAGGTGTCTCTGCCCACGGAATCGTACACCACGCGCACTTTCTT                                                 <  SRR4302536.3582362/94‑1 (MQ=60)

                                              AAAACTGACCATTGAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTCCCCAGGTGTCTCTGCCCACGGAATCGTACACCACGCGCACTTTCTTA                                                <  SRR4302536.3786380/94‑1 (MQ=60)

                                              AAAACTGACCATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTCCCCAGGTGTCTCTGCCCACGGAATCGTACACCACGCGCACTTTCTTA                                                >  SRR4302536.4214275/1‑94 (MQ=60)

                                              AAAACTGACCATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTCCCCAGGTGTCTCTGCCCACGGAATCGTACACCACGCGCACTTTCTTA                                                <  SRR4302536.3165125/94‑1 (MQ=60)

                                               AAACTGACCATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTCCCCAGGTGTCTCTGCCCACGGAATCGTACACCACGCGCACTTTCTTAC                                               >  SRR4302536.2836037/1‑94 (MQ=60)

                                               AAACTGACCATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTCCCCAGGTGTCTCTGCCCACGGAATCGTACACCACGCGCACTTTCTTAC                                               >  SRR4302536.5417869/1‑94 (MQ=60)

                                                AACTGACCATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTCCCCAGGTGTCTCTGCCCACGGAATCGTACACCACGCGCACTTTCTTACC                                              <  SRR4302536.1442228/94‑1 (MQ=60)

                                                AACTGACCATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTCCCCAGGTGTCTCTGCCCACGGAATCGTACACCACGCGCACTTTCTTACC                                              <  SRR4302536.5833068/94‑1 (MQ=60)

                                                 ACTGACCATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTCCCCAGGTGTCTCTGCCCACGGAATCGTACACCACGCGCACTTTCTTACCG                                             <  SRR4302536.631819/94‑1 (MQ=60)

                                                 ACTGACCATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTCCCCAGGTGTCTCTGCCCACGGAATCGTACACCACGCGCACTTTCTTACCG                                             <  SRR4302536.4428618/94‑1 (MQ=60)

                                                  CTGACCATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTCCCCAGGTGTCTCTGCCCACGGAATCGTACACCACGCGCACTTTCTTACCGC                                            >  SRR4302536.3959516/1‑94 (MQ=60)

                                                   TGACCATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTCCCCAGGTGTCTCTGCCCACGGAATCGTACACCACGCGCACTTTCTTACCGCC                                           >  SRR4302536.5314942/1‑94 (MQ=60)

                                                   TGACCATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTCCCCAGGTGTCTCTGCCCACGGAATCGTACACCACGCGCACCTTCTTACCGCC                                           >  SRR4302536.3412085/1‑94 (MQ=60)

                                                    GACCATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTCCCCAGGTGTCTCTGCCCACGGAATCGTACACCACGCGCACTTTCTTACCGCCG                                          >  SRR4302536.2247812/1‑94 (MQ=60)

                                                     ACCATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTCCCCAGGTGTCTCTGCCCACGGAATCGTACACCACGCGCACTTTCTTACCGCCGG                                         >  SRR4302536.135615/1‑94 (MQ=60)

                                                     ACCATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTCCCCAGGTGTCTCTGCCCACGGAATCGTACACCACGCGCACTTTCTTACCGCCGG                                         <  SRR4302536.3258234/94‑1 (MQ=60)

                                                      CCATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTCCCCAGGTGTCTCTGCCCACGGAATCGTACACCACGCGCACTTTCTTACCGCCGGT                                        >  SRR4302536.4637028/1‑94 (MQ=60)

                                                        ATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTCCCCAGGTGTCTCTGCCCACGGAATCGTACACCACGCGCACTTTCTTACCGCCGGTGA                                      <  SRR4302536.4945381/94‑1 (MQ=60)

                                                         TTAAGCCGCGGCTTTGCAGGCAATCCAGCGACCGTCCCCAGGTGTCTCTGCCCACGGAATCGTACACCACGCGCACTTTCTTACCGCCGGTGAT                                     <  SRR4302536.1558244/94‑1 (MQ=60)

                                                         TTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTCCCCAGGTGTCTCTGCCCACGGAATCGTACACCACGCGCACTTTCTTACCGCCGGTGAT                                     <  SRR4302536.980874/94‑1 (MQ=60)

                                                         TTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTCCCCAGGTGTCTCTGCCCACGGAATCGTACACCACGCGCACTTTCTTACCGCCGGTGAT                                     <  SRR4302536.3569735/94‑1 (MQ=60)

                                                           AAGCCGCGGCGTTGCAGGCATTCCAGCGACCGTCCCCAGGTGTCTCTGCCCACGGAATCGTACACCACGCGCACTTTCTTACCGCCGGTGATCT                                   >  SRR4302536.6734577/1‑94 (MQ=60)

                                                           AAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTCCCCAGGTGTCTCTGCCCACGGAATCGTACACCACGCGCACTTTCTTACCGCCGGTGATCT                                   >  SRR4302536.1449789/1‑94 (MQ=60)

                                                           AAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTCCCCAGGTGTCTCTGCCCACGGAATCGTACACCACGCGCACTTTCTTACCGCCGGTGATCT                                   >  SRR4302536.5734406/1‑94 (MQ=60)

                                                            AGCCGCGGCGTTGCAGGCAATCCAGCGACCTTCCCCAGGTGTCTCTGCCCCCGGCATCGTACACCACGCGCACTTTCTTACCGCCGGTGCTCTC                                  >  SRR4302536.716662/1‑94 (MQ=60)

                                                             GCCGCGGCGTTGCAGGCAATCCAGCGACCGTCCCCAGGTGTCTCTGCCCACGGAATCGTACACCACGCGCACTTTCTTACCGCCGGTGATCTCT                                 <  SRR4302536.5817065/94‑1 (MQ=60)

                                                              CCGCGGCGTTGCAGGCAATCCAGCGACCGTCCCCAGGTGTCTCTGCCCACGGAATCGTACACCACGCGCACTTTCTTACCGCCGGTGATCTCTT                                <  SRR4302536.5454126/94‑1 (MQ=60)

                                                              CCGCGGCGTTGCAGGCAATCCAGCGACCGTCCCCAGGTGTCTCTGCCCACGGAATCGTACACCACGCGCACTTTCTTACCGCCGGTGATCTCTT                                >  SRR4302536.1773718/1‑94 (MQ=60)

                                                              CCGCGGCGTTACAGGCAATCCAGCGACCGTCCCCAGGTGTCTCTGCCCACGGAATCGTACACCACGCGCACTTTCTTTCCGCCGGTGATCTCTT                                <  SRR4302536.6743653/94‑1 (MQ=60)

                                                               CGCGGCGTTGCAGGCAATCCAGCGACCGTCCCCAGGTGTCTCTGCCCACGGAATCGTACACCACGCGCACTTTCTTACCGCCGGTGATCTCTTT                               <  SRR4302536.3055967/94‑1 (MQ=60)

                                                                GCGGCGTTGCAGGCAATCCAGCGACCGTCCCCAGGTGTCTCTGCCCACGGAATCGTACACCACGCGCACTTTCTTACCGCCGGTGATCTCTTTT                              <  SRR4302536.2059991/94‑1 (MQ=60)

                                                                 CGGCGTTGCAGGCAATCCAGCGACCGTCCCCAGGTGTCTCTGCCCACGGAATCGTACACCACGCGCACTTTCTTACCGCCGGTGATCTCTTTTA                             <  SRR4302536.404899/94‑1 (MQ=60)

                                                                  GGCGTTGCAGGCAATCCAGCGACCGTCCCCAGGTGTCTCTGCCCACGGAATCGTACACCACGCGCACTTTCTTACCGCCGGTGATCTCTTTTAA                            <  SRR4302536.5892852/94‑1 (MQ=60)

                                                                  GGCGTTGCAGGCAATCCAGCGACCGTCCCCAGGTGTCTCTGCCCACGGAATCGTACACCACGCGCACTTTCTTACCGCCGGTGATCTCTTTTAA                            >  SRR4302536.5071579/1‑94 (MQ=60)

                                                                   GCGTTGCAGGCAATCCAGCGACCGTCCCCAGGTGTCTCTGCCCACGGAATCGTACACCACGCGCACTTTCTTACCGCCGGTGATCTCTTTTAAC                           <  SRR4302536.1773160/94‑1 (MQ=60)

                                                                    CGTTGCAGGCAATCCAGCGACCGTCCCCAGGTGTCTCTGCCCACGGAATCGTACACCACGCGCACTTTCTTACCGCCGGTGATCTCTTTTAACC                          <  SRR4302536.3579123/94‑1 (MQ=60)

                                                                    CGTTGCAGGCAATCCAGCGACCGTCCCCAGGTGTCTCTGCCCACGGAATCGTACACCACGCGCACTTTCTTACCGCCGGTGATCTCTTTTAACC                          >  SRR4302536.706389/1‑94 (MQ=60)

                                                                    CGTTGCAGGCAATCCAGCGACCGTCCCCAGGTGTCTCTGCCCACGGAATCGTACACCACGCGCACTTTCTTACCGCCGGTGATCTCTTTTAACC                          <  SRR4302536.1206163/94‑1 (MQ=60)

                                                                      TTGCAGGCAATCCAGCGACCGTCCCCAGGTGTCTCTGCCCACGGAATCGTACACCACGCGCACTTTCTTACCGCCGGTGATCTCTTTTAACCGC                        <  SRR4302536.5150501/94‑1 (MQ=60)

                                                                       TGCAGGCAATCCAGCGACCGTCCCCAGGTGTCTCTGCCCACGGAATCGTACACCACGCGCACTTTCTTACCGCCGGTGATCTCTTTTAACCGCT                       >  SRR4302536.5553591/1‑94 (MQ=60)

                                                                        GCAGGCAATCCAGCGACCGTCCCCAGGTGTCTCTGCCCACGGAATCGTACACCACGCGCACTTTCTTACCGCCGGTGATCTCTTTTAACCGCTC                      <  SRR4302536.5123896/94‑1 (MQ=60)

                                                                         CAGGCAATCCAGCGACCGTCCCCAGGTGTCTCTGCCCACGGAATCGTACACCACGCGCACTTTCTTACCGCCGGTGATCTCTTTTAACCGCTCG                     <  SRR4302536.5446275/94‑1 (MQ=60)

                                                                         CAGGCAATCCAGCGACCGTCCCCAGGTGTCTCTGCCCACGGAATCGTACACCACGCGCACTTTCTTACCGCCGGTGATCTCTTTTAACCGCTCG                     >  SRR4302536.2472961/1‑94 (MQ=60)

                                                                         CAGGCAATCCAGCGACCGTCCCCAGGTGTCTCTGCCCACGGAATCGTACACCACGCGCACTTTCTTACCGCCGGTGATCTCTTTTAACCGCTCA                     <  SRR4302536.3026073/94‑1 (MQ=60)

                                                                          AGGCAATCCAGCGACCGTCCCCAGGTGTCTCTGCCCACGGAATCGTACACCACGCGCACTTTCTTACCGCCGGTGATCTCTTTTAACCGCTCGA                    >  SRR4302536.6051285/1‑94 (MQ=60)

                                                                           GGCAATCCAGCGACCGTCCCCAGGTGTCTCTGCCCACGGAATCGTACACCACGCGCACTTTCTTACCGCCGGTGATCTCTTTTAACCGCTCGAC                   <  SRR4302536.1434395/94‑1 (MQ=60)

                                                                           GGCAATCCAGCGACCGTCCCCAGGTGTCTCTGCCCACGGAATCGTACACCACGCGCACTTTCTTACCGCCGGTGATCTCTTTTAACCGCTCGAC                   <  SRR4302536.2042345/94‑1 (MQ=60)

                                                                            GCAATCCAGCGACCGTCCCCAGGTGTCTCTGCCCACGGAATCGTACACCACGCGCACTTTCTTACCGCCGGTGATCTCTTTTAACCGCTCGACC                  <  SRR4302536.3329838/94‑1 (MQ=60)

                                                                             CAATCCAGCGACCGTCCCCAGGTGTCTCTGCCCACGGAATCGTACACCACGCGCACTTTCTTACCGCCGGTGATCTCTTTTAACCGCTCGACCA                 >  SRR4302536.13652/1‑94 (MQ=60)

                                                                              AATCCAGCGACCGTCCCCAGGTGTCTCTGCCCACGGAATCGTACACCACGCGCACTTTCTTACCGCCGGTGATCTCTTTTAACCGCTCGACCAG                >  SRR4302536.4208863/1‑94 (MQ=60)

                                                                              AATCCAGCGACCGTCCCCAGGTGTCTCTGCCCACGGAATCGTACACCACGCGCACTTTCTTACCGCCGGTGATCTCTTTTAACCGCTCGACCAG                >  SRR4302536.2887991/1‑94 (MQ=60)

                                                                              AATCCAGCGACCGTCCCCAGGTGTCTCTGCCCACGGAATCGTACACCACGCGCACTTTCTTACCGCCGGTGATCTCTTTTAACCGCTCGACCAG                >  SRR4302536.6439381/1‑94 (MQ=60)

                                                                                TCCAGCGACCGTCCCCAGGTGTCTCTGCCCACGGAATCGTACACCACGCGCACTTTCTTACCGCCGGTGATCTCTTTTAACCGCTCGACCAGAT              >  SRR4302536.4825856/1‑94 (MQ=60)

                                                                                 CCAGCGACCGTCCCCAGGTGTCTCTGCCCACGGAATCGTACACCACGCGCACTTTCTTACCGCCGGTGATCTCTTTTAACCGCTCGACCAGATC             <  SRR4302536.1390501/94‑1 (MQ=60)

                                                                                  CAGCGACCGTCCCCAGGTGTCTCTGCCCACGGAATCGTACACCACGCGCACTTTCTTACCGCCGGTGATCTCTTTTAACCGCTCGACCAGATCC            >  SRR4302536.6780142/1‑94 (MQ=60)

                                                                                  CAGCGACCGTCCCCAGGTGTCTCTGCCCACGGAATCGTACACCACGCGCACTTTCTTACCGCCGGTGATCTCTTTTAACCGCTCGACCAGATCC            <  SRR4302536.1591784/94‑1 (MQ=60)

                                                                                  CAGCGACCGTCCCCAGGTGTCTCTGCCCACGGAATCGTACACCACGCGCACTTTCTTACCGCCGGTGATCTCTTTTAACCGCTCGACCAGATCC            >  SRR4302536.2460405/1‑94 (MQ=60)

                                                                                  CAGCGACCGTCCCCAGGTGTCTCTGCCCACGGAATCGTACACCACGCGCACTTTCTTACCGCCGGTGATCTCTTTTAACCGCTCGACCAGATAC            >  SRR4302536.954028/1‑94 (MQ=60)

                                                                                  CAGCGACCGTCCCCAGGTGTCTCTGCCCACGGAATCGTACACCACGCGCACTTTCTTACCGCCGGTGATCTCTTTTAACCCCTCGACCAGATCC            >  SRR4302536.4293631/1‑94 (MQ=60)

                                                                                   AGCGCCCGTCCCCAGGTGTCTCTGCCCACGGAATCGTACTCCACGCGCACTTTCTTACCGCCGTTGATCTCTTTTAACCGCTCGACCAGATCCT           <  SRR4302536.1186403/94‑1 (MQ=60)

                                                                                   AGCGACCGTCCCCAGGTGTCTCTGCCCACGGAATCGTACACCACGCGCACTTTCTTACCGCCGGTGATCTCTTTTAACCGCTCGACCAGATCCT           >  SRR4302536.3447888/1‑94 (MQ=60)

                                                                                   AGCGACCGTCCCCAGGTGTCTCTGCCCACGGAATCGTACACCACGCGCACTTTCTTACCGCCGGTGATCTCTTTTAACCGCTCGACCAGATCCT           >  SRR4302536.6114323/1‑94 (MQ=60)

                                                                                   AGCGACCGTCCCCAGGTGTCTCTGCCCACGGAATCGTACACCACGCGCACTTTCTTACCGCCGGTGATCTCTTTTAACCGCTCGACCAAATCCT           >  SRR4302536.6175662/1‑94 (MQ=60)

                                                                                    GCGACCGTCCCCAGGTGTCTCTGCCCACGGAATCGTACACCACGCGCACTTTCTTACCGCCGGTGATCTCTTTTAACCGCTCGACCAGATCCTC          <  SRR4302536.40732/94‑1 (MQ=60)

                                                                                    GCGACCGTCCCCAGGTGTCTCTGCCCACGGAATCGTACACCACGCGCACTTTCTTACCGCCGGTGATCTCTTTTAACCGCTCGACCAGATCCTC          >  SRR4302536.5674845/1‑94 (MQ=60)

                                                                                     CGACCGTCCCCAGGTGTCTCTGCCCACGGAATCGTACACCACGCGCACTTTCTTACCGCCGGTGATCTCTTTTAACCGCTCGACCAGATCCTCT         >  SRR4302536.4651436/1‑94 (MQ=60)

                                                                                     CGACCGTCCCCAGGTGTCTCTGCCCACGGAATCGTACACCACGCGCACTTTCTTACCGCCGGTGATCTCTTTTAACCGCTCGACCAGATCCTCT         <  SRR4302536.2993913/94‑1 (MQ=60)

                                                                                       ACCGTCCCCAGGTGTCTCTGCCCACGGAATCGTACACCACGCGCACTTTCTTACCGCCGGTGATCTCTTTTAACCGCTCGACCAGATCCTCTTC       <  SRR4302536.1563069/94‑1 (MQ=60)

                                                                                       ACCGTCCCCAGGTGTCTCTGCCCACGGAATCGTACACCACGCGCACTTTCTTACCGCCGGTGATCTCTTTTAACCGCTCGACCAGATCCTCTTC       <  SRR4302536.2197584/94‑1 (MQ=60)

                                                                                        CCGTCCCCAGGTGTCTCTGCCCACGGAATCGTACACCACGCGCACTTTCTTACCGCCGGTGATCTCTTTTAACCGCTCGACCAGATCCTCTTCA      <  SRR4302536.3299360/94‑1 (MQ=60)

                                                                                        CCGTCCCCAGGTGTCTCTGCCCACGGAATCGTACACCACGCGCACTTTCTTACCGCCGGTGATCTCTTTTAACCGCTCGACCAGATCCTCTTCA      <  SRR4302536.1237837/94‑1 (MQ=60)

                                                                                         CGTCCCCAGGTGTCTCTGCCCACGGAATCGTACACCACGCGCACTTTCTTACCGCCGGTGATCTCTTTTAACCGCTCGACCAGATCCTCTTCAC     >  SRR4302536.2208076/1‑94 (MQ=60)

                                                                                          GTCCCCAGGTGTCTCTGCCCACGGAATCGTACACCACGCGCACTTTCTTACCGCCGGTGATCTCTTTTAACCGCTCGACCAGATCCTCTTCACG    <  SRR4302536.4572358/94‑1 (MQ=60)

                                                                                            CCCCAGGTGTCTCTGCCCACGGAATCGTACACCACGCGCACTTTCTTACCGCCGGTGATCTCTTTTAACCGCTCGACCAGATCCTCTTCACGAT  <  SRR4302536.2378400/94‑1 (MQ=60)

                                                                                            CCCCAGGTGTCTCTGCCCACGGAATCGTACACCACGCGCACTTTCTTACCGCCGGTGATCTCTTTTAACCGCTCGACCAGATCCTCTTCACGAT  <  SRR4302536.4726712/94‑1 (MQ=60)

TGAGAATGCCTAAGTTCACACCGGTAACCGCACCTGATGAGTTGCCAAAACTGACCATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTTCCCAGGTGTCTCTGCCCACGGAATCGTACACCACGCGCACTTTCTTACCGCCGGTGATCTCTTTTAACCGCTCGACCAGATCCTCTTCACGAT  >  NC_000913/4261051‑4261236

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`