Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1548 |
369.5 |
20095359 |
96.9% |
19472402 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,123,585 |
+G |
coding (953/2286 nt) |
glcF ← |
glycolate oxidase iron‑sulfur subunit |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,123,582 | 1 | . | G | 99.6%
| 775.1
/ ‑4.8
| 242 | R319P (CGC→CCC) | glcF | glycolate oxidase iron‑sulfur subunit |
| Reads supporting (aligned to +/- strand): ref base . (0/0); major base G (124/117); minor base T (1/0); total (125/117) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.40e-01 |
Only 100 of 271 total aligned reads displayed.
AGTTCCGCGTACATGCGACCGGGGTTAAACACGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGC‑G‑GGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGGATTTGATTGTCCTCGGCTG > NC_000913/3123490‑3123669
|
aGTTCCGCGTACATGCGACCGGGGTTAAACACGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGc > 1:1375500/1‑93 (MQ=255)
ttCCGCGTACATGCGACCGGGGTTAAACACGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGC‑g‑g < 1:1710088/93‑1 (MQ=255)
tCCGCGTACATGCGACCGGGGTTAAACACGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGC‑g‑gg < 2:8501413/93‑1 (MQ=255)
tCCGCGTACATGCGACCGGGGTTAAACACGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGC‑g‑gg < 2:1481073/93‑1 (MQ=255)
tCCGCGTACATGCGACCGGGGTTAAACACGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGC‑g‑gg > 2:3841973/1‑93 (MQ=255)
ccGCGTACATGCGACCGGGGTTAAACACGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGC‑g‑ggg > 1:2144231/1‑92 (MQ=255)
gcgTACATGCGACCGGGGTTAAACACGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGC‑g‑gggca > 2:7525346/1‑90 (MQ=255)
tACATGCGACCGGGGTTAAACACGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGG‑GGCAAAg > 1:4893681/1‑93 (MQ=255)
tACATGCGACCGGGGTTAAACACGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGG‑GGCAAAg > 1:6802571/1‑93 (MQ=255)
tACATGCGACCGGGGTTAAACACGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGG‑GGCAAAg > 2:7977207/1‑93 (MQ=255)
aTGCGACCGGGGTTAAACACGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGG‑GGCAAAGcca > 2:5901795/1‑93 (MQ=255)
aTGCGACCGGGGTTAAACACGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGG‑GGCAAAGcca > 2:309384/1‑93 (MQ=255)
gCGACCGGGGTTAAACACGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGG‑GGCAAAGccacc < 1:3470931/93‑1 (MQ=255)
cGACCGGGGTTAAACACGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGG‑GGCAAAGccacca > 2:2108570/1‑93 (MQ=255)
gACCGGGGTTAAACACGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGG‑GGCAAAGCCACCAt < 2:3232703/93‑1 (MQ=255)
gACCGGGGTTAAACACGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGG‑GGCAAAGCCACCAt < 1:3823945/93‑1 (MQ=255)
gACCGGGGTAAACCAGGCCGCAAGTGTCGAGCTGCTGTTAAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGG‑GGCAAAGCCACCAt < 2:5975537/93‑1 (MQ=255)
ccGGGGTTAAACACGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGG‑GGCAAAGCCACCAtct > 2:4867474/1‑93 (MQ=255)
ccGGGGTTAAACACGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGG‑GGCAAAGCCACCAtct < 1:2663143/93‑1 (MQ=255)
ggggTTAAACACGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGG‑GGCAAAGCCACCATCTcc < 1:6451687/93‑1 (MQ=255)
gggTTAAACACGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGC‑GTGGCAAAGCCACCATCTCCg > 2:3921561/1‑93 (MQ=255)
ttAAACACGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGG‑GGCAAAGCCACCATCTCCGGCa > 2:1316168/1‑93 (MQ=255)
tAAACACGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGG‑GGCAAAGCCACCATCTCCGGCAc > 1:9513616/1‑93 (MQ=255)
attcacGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATATCGGTATAAAGGAGCCGATAGCGG‑GGCATAGCCACCATCTCCGGCACt > 2:8979634/4‑93 (MQ=255)
aaaCACGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGG‑GGCAAAGCCACCATCTCCGGCACt > 1:2351482/1‑93 (MQ=255)
aaaCACGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGG‑GGCAAAGCCACCATCTCCGGCACt > 2:7381225/1‑93 (MQ=255)
aaCACGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGG‑GGCAAAGCCACCATCTCCGGCACTa > 1:5483380/1‑93 (MQ=255)
acacGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGG‑GGCAAAGCCACCATCTCCGGCACTaa < 1:5167327/93‑1 (MQ=255)
cacGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGG‑GGCAAAGCCACCATCTCCGGCACTaaa < 1:2069228/93‑1 (MQ=255)
cgccgcAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGG‑GGCAAAGCCACCATCTCCGGCACTAAAGc < 2:9792893/93‑1 (MQ=255)
gccgcAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGG‑GGCAAAGCCACCATCTCCGGCACTAAAGCg < 2:873575/93‑1 (MQ=255)
ccgcAAGGGTCGAGCTGCTTTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGG‑GGCAAAGCCACCATCTCCGGCACTAAAGCgg < 2:1916236/93‑1 (MQ=255)
cAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGG‑GGCAAAGCCACCATCTCCGGCACTAAAGCGGGTc > 2:9438997/1‑93 (MQ=255)
cAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAACGGAATAAAGGAGCCGATAGCGG‑GGCAAAGCCACCATCTCCGGCACTAAAGCGGGTc > 2:9895771/1‑93 (MQ=255)
aGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGG‑GGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGc > 1:1833160/1‑93 (MQ=255)
gggTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGG‑GGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCa < 2:2712938/93‑1 (MQ=255)
ggTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGG‑GGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCAt > 1:4099374/1‑93 (MQ=255)
gTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGG‑GGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATg > 1:7973591/1‑93 (MQ=255)
gTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGG‑GGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATg > 2:7365890/1‑93 (MQ=255)
gTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGG‑GGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATg < 2:8134779/93‑1 (MQ=255)
tCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGG‑GGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGa > 2:3998905/1‑93 (MQ=255)
cGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGG‑GGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGAc < 1:5075437/93‑1 (MQ=255)
cGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGG‑GGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGAc < 2:9383540/93‑1 (MQ=255)
gAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGG‑GGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGAcc > 2:8169070/1‑93 (MQ=255)
gctgctGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGG‑GGCTAAGCCACCATCTCCGGCACTAAAGCGGGGCGCATGACCGc > 2:7725364/1‑93 (MQ=255)
gctgctGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGG‑GGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGc < 1:3112049/93‑1 (MQ=255)
tgctgTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGG‑GGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCa < 1:3931771/93‑1 (MQ=255)
gctgTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGG‑GGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAg > 1:3208956/1‑93 (MQ=255)
gctgTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGG‑GGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAg < 2:7714089/93‑1 (MQ=255)
gctgTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGG‑GGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAg > 1:8442495/1‑93 (MQ=255)
ctgTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGG‑GGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGc < 2:6963720/93‑1 (MQ=255)
tgTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGG‑GGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCg > 2:2341773/1‑93 (MQ=255)
tgTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGG‑GGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCg > 1:770423/1‑93 (MQ=255)
gTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGG‑GGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGt > 1:9681809/1‑93 (MQ=255)
gTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGG‑GGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGt > 2:10025918/1‑93 (MQ=255)
gTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGG‑GGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGt < 1:9606497/93‑1 (MQ=255)
gTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGG‑GGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGt > 1:1561132/1‑93 (MQ=255)
ttAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGG‑GGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTg > 1:3658222/1‑93 (MQ=255)
ttAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGG‑GGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTg < 2:8801811/93‑1 (MQ=255)
tAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGG‑GGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGc < 2:5729251/93‑1 (MQ=255)
aaGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGG‑GGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCg < 1:4244/93‑1 (MQ=255)
aaGCTGCGGGTGATAGCGGAATAAAGGAGCCGATAGCGG‑GGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCg < 2:456806/93‑1 (MQ=255)
aGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGG‑GGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCgg > 2:628234/1‑93 (MQ=255)
aGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGG‑GGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCgg > 2:4470105/1‑93 (MQ=255)
aGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGG‑GGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCgg < 1:7308014/93‑1 (MQ=255)
gctgctGGTGATAGCGGAATAAAGGAGCCGATAGCGG‑GGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCggg < 1:8997754/93‑1 (MQ=255)
gctgctGGTGATAGCGGAATAAAGGAGCCGATAGCGG‑GGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCggg < 2:8402552/93‑1 (MQ=255)
ctgctgGTGATAGCGGAATAAAGGAGCCGATAGCGG‑GGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGgc > 1:711681/1‑93 (MQ=255)
gctgGTGATAGCGGAATAAAGGAGCCGATAGCGG‑GGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGgcga > 1:600290/1‑93 (MQ=255)
tgGTGATAGCGGAATAAAGGAGCCGATAGCGG‑GGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGgcgatg > 1:6218875/1‑93 (MQ=255)
ggTGATAGCGGAATAAAGGAGCCGATAGCGG‑GGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGgcgatgc > 1:4717349/1‑93 (MQ=255)
ggTGATAGCGGAATAAAGGAGCCGATAGCGG‑GGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGgcgatgc > 1:3440068/1‑93 (MQ=255)
ggTGATAGCGGAATAAAGGAGCCGATAGCGG‑GGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGgcgatgc < 2:5341279/93‑1 (MQ=255)
tGATAGCGGAATAAAGGAGCCGATAGCGG‑GGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGgcgatgcga > 1:9370899/1‑93 (MQ=255)
tGATAGCGGAATAAAGGAGCCGATAGCGG‑GGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGgcgatgcga < 1:7365891/93‑1 (MQ=255)
tGATAGCGGAATAAAGGAGCCGATAGCGG‑GGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGgcgatgcga < 1:6701085/93‑1 (MQ=255)
ggagaGCGGAAAAAAGGAGCCGATAGCGG‑GGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGgcgatgcga < 1:7524712/89‑1 (MQ=255)
gATAGCGGAATAAAGGAGCCGATAGCGG‑GGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGgcgatgcgat > 1:110659/1‑93 (MQ=255)
ttAGCGGAATAAAGGAGCCGATAGCGG‑GGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGcgatgcgatg > 1:8825/2‑93 (MQ=255)
aTAGCGGAATAAAGGAGCCGATAGCGG‑GGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGcgatgcgatg < 1:8182496/93‑1 (MQ=255)
tAGCGGAATAAAGGAGCCGATAGCGG‑GGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATgg < 1:5641117/93‑1 (MQ=255)
tAGCGGAATAAAGGAGCCGATAGCGG‑GGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATgg > 2:1661279/1‑93 (MQ=255)
ggAATAAAGGAGCCGATAGCGG‑GGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGGAttt < 2:8069420/93‑1 (MQ=255)
gAATAAAGGAGCCGATAGCGG‑GGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGTTGGATTTg > 1:5870980/1‑93 (MQ=255)
gAATAAAGGAGCCGATAGCGG‑GGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGGATTTg < 1:8345018/93‑1 (MQ=255)
gAATAAAGGAGCCGATAGCGG‑GGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGGATTTg < 2:5496815/93‑1 (MQ=255)
aaTAAAGGAGCCGATAGCGG‑GGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGGATTTgt > 2:7843370/1‑92 (MQ=255)
aTAAAGGAGCCGATAGCGG‑GGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGGATTTGAt < 1:3421523/93‑1 (MQ=255)
aTAAAGGAGCCGATAGCGG‑GGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGGATTTGAt < 2:9552091/93‑1 (MQ=255)
aTAAAGGAGCCGATAGCGG‑GGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGGATTTGAt < 1:8721011/93‑1 (MQ=255)
aaaGGAGCCGATAGCGG‑GGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGGATTTGATTg > 2:8914478/1‑93 (MQ=255)
aaGGAGCCGATAGCGG‑GGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGGATTTGATTGt < 1:2291846/93‑1 (MQ=255)
aGGAGCCGATAGCGG‑GGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGGATTTGATTGTc > 2:5053159/1‑93 (MQ=255)
aGGAGCCGATAGCGG‑GGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGGATTTGATTGTc < 1:4001433/93‑1 (MQ=255)
aGGAGCCGATAGCGG‑GGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGGATTTGATTGTc < 1:5540408/93‑1 (MQ=255)
ggCCGATAGCGG‑GGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGGATTTGATTTTCCtg > 2:4087736/2‑92 (MQ=255)
cGATAGCGG‑GGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGGATTTGATTGTCCTCGGc > 1:7887751/1‑93 (MQ=255)
gATAGCGG‑GGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGGATTTGATTGTCCTCGGCt > 2:3535090/1‑93 (MQ=255)
gATAGCGG‑GGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGGATTTGATTGTCCTCGGCt > 1:3529345/1‑93 (MQ=255)
gATAGCGG‑GGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGGATTTGATTGTCCTCGGCt > 1:1445820/1‑93 (MQ=255)
|
AGTTCCGCGTACATGCGACCGGGGTTAAACACGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGC‑G‑GGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGGATTTGATTGTCCTCGGCTG > NC_000913/3123490‑3123669
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
TTCCGCGTACATGCGACCGGGGTTAAACACGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAG‑C‑GG‑GCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGGATTTGATTGTCCTCGGCTGTCGATTTCA > NC_000913/3123492‑3123678
|
TTCCGCGTACATGCGACCGGGGTTAAACACGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAG‑C‑GG‑G > SRR4302540.9700970/1‑94 (MQ=60)
TTCCGCGTACATGCGACCGGGGTTAAACACGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAG‑C‑GG‑G < SRR4302540.1728563/94‑1 (MQ=60)
TCCGCGTACATGCGACCGGGGTTAAACTCGGCGCTAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAG‑C‑GG‑GG < SRR4302540.5414493/94‑1 (MQ=60)
TCCGCGTACATGCGACCGGGGTTAAACACGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAG‑C‑GG‑GG < SRR4302540.975192/94‑1 (MQ=60)
TCCGCGTACATGCGACCGGGGTTAAACACGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAG‑C‑GG‑GG > SRR4302540.2167275/1‑94 (MQ=60)
TCCGCGTACATGCGACCGGGGTTAAACACGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAG‑C‑GG‑GG < SRR4302540.5197454/94‑1 (MQ=60)
CCGCGTACATGCGACCGGGGTTAAACACGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAG‑C‑GG‑Ggc > SRR4302540.9607368/1‑92 (MQ=60)
CGCGTACATGCGACCGGGGTTAAACACGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAG‑C‑GG‑Ggca > SRR4302540.3962302/1‑91 (MQ=60)
CGTACATGCGACCGGGGTTAATCACGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAG‑CGGG‑GCAAA < SRR4302540.8782003/94‑1 (MQ=60)
CGTACATGCGACCGGGGTTAAACACGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGAG‑GG‑GCAAA > SRR4302540.5388841/1‑94 (MQ=60)
CGTACATGCGACCGGGGTTAAACACGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAG‑CGGG‑GCAAA > SRR4302540.6805230/1‑94 (MQ=60)
CGTACATGCGACCGGGGTTAAACACGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAG‑CGGG‑GCAAA > SRR4302540.8537445/1‑94 (MQ=60)
CGTACATGCGACCGGGGTTAAACACGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAG‑CGGG‑GCAAA > SRR4302540.2807146/1‑94 (MQ=60)
GTACATGCGACCGGGGTTAAACACGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAG‑CGGG‑GCAAAG > SRR4302540.6877834/1‑94 (MQ=60)
GTACATGCGACCGGGGTTAAACACGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAG‑CGGG‑GCAAAG > SRR4302540.1846322/1‑94 (MQ=60)
GTACATGCGACCGGGGTTAAACACGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAG‑CGGG‑GCAAAG > SRR4302540.4946308/1‑94 (MQ=60)
GTACATGCGACCGGGGTTAAACACGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAG‑CGGG‑GCAAAG < SRR4302540.3954515/94‑1 (MQ=60)
ACATGCGACCGGGGTTAAACACGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAG‑CGGG‑GCAAAGCC < SRR4302540.951821/94‑1 (MQ=60)
TGCGACCGGGGTTAAACACGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAG‑CGGG‑GCAAAGCCACC < SRR4302540.4312478/94‑1 (MQ=60)
GCTACCGGGGTTAAACACGCCGCAAGTGTCGCGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAG‑CGGG‑GCAAAGCCACCA < SRR4302540.3508439/94‑1 (MQ=60)
GCGACCGGGGTTAAACACGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAG‑CGGG‑GCAAAGCCACCA < SRR4302540.3508718/94‑1 (MQ=60)
CGAGCGGGGTTAAACACGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAAAAAAGGAGCCGATAG‑CGGG‑GCAAAGCCACCAT < SRR4302540.3292115/94‑1 (MQ=60)
CGACCGGGGTTAAACACGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAG‑CGGG‑GCAAAGCCACCAT > SRR4302540.5710387/1‑94 (MQ=60)
GACGGGGGTTAAACACGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAG‑CGGG‑GCAAAGCCACCATC < SRR4302540.2171077/94‑1 (MQ=60)
GACCGGGGTTAAACACGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAG‑CGGG‑GCAAAGCCACCATC < SRR4302540.3865554/94‑1 (MQ=60)
CCGGGGTTAAACACGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAG‑CGGG‑GCAAAGCCACCATCTC < SRR4302540.2692027/94‑1 (MQ=60)
CGGGGTTAAACACGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAG‑CGGG‑GCAAAGCCACCATCTCC < SRR4302540.3973433/94‑1 (MQ=60)
CGGGGTTAAACACGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAG‑CGGG‑GCAAAGCCACCATCTCC < SRR4302540.1421499/94‑1 (MQ=60)
CGGGGTTAAACACGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAG‑CGGG‑GCAAAGCCACCATCTCC < SRR4302540.3172716/94‑1 (MQ=60)
GGGGTTAAACACGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAG‑CGGG‑GCAAAGCCACCATCTCCG < SRR4302540.6523496/94‑1 (MQ=60)
GCGGTTAAACACGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAG‑CGGG‑GCAAAGCCACCATCTCCG < SRR4302540.6523495/94‑1 (MQ=60)
GGGTTAAACACGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAG‑CGGG‑GCAAAGCCACCATCTCCGG > SRR4302540.2230899/1‑94 (MQ=60)
GGTTAAACACGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAG‑CGGG‑GCAAAGCCACCATCTCCGGC > SRR4302540.43608/1‑94 (MQ=60)
GGTTAAACACGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAG‑CGGG‑GCAAAGCCACCATCTCCGGC > SRR4302540.3550767/1‑94 (MQ=60)
GTTAAACACGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAG‑CGGG‑GCAAAGCCACCATCTCCGGCA > SRR4302540.4853693/1‑94 (MQ=60)
GTTAAACACGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAG‑CGGG‑GCAAAGCCACCATCTCCGGCA > SRR4302540.4853691/1‑94 (MQ=60)
TTAAACACGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAG‑CGGG‑GCAAAGCCACCATCTCCGGCAC > SRR4302540.9626303/1‑94 (MQ=60)
TTAAACACGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAG‑CGGG‑GCAAAGCCACCATCTCCGGCAC > SRR4302540.7055939/1‑94 (MQ=60)
TTAAACACGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAG‑CGGG‑GCAAAGCCACCATCTCCGGCAC < SRR4302540.783022/94‑1 (MQ=60)
TAAACACGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAG‑CGGG‑GCAAAGCCACCATCTCCGGCACT > SRR4302540.2376806/1‑94 (MQ=60)
TAAACACGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAG‑CGGG‑GCAAAGCCACCATCTCCGGCACT < SRR4302540.152783/94‑1 (MQ=60)
TAAACACGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAG‑CGGG‑GCAAAGCCACCATCTCCGGCACT > SRR4302540.799/1‑94 (MQ=60)
AAACACGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAG‑CGGG‑GCAAAGCCACCATCTCCGGCACTA > SRR4302540.5543747/1‑94 (MQ=60)
AAACACGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAG‑CGGG‑GCAAAGCCACCATCTCCGGCACTA < SRR4302540.8774670/94‑1 (MQ=60)
ACACGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAG‑CGGG‑GCAAAGCCACCATCTCCGGCACTAAA < SRR4302540.2643593/94‑1 (MQ=60)
ACACGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAG‑CGGG‑GCAAAGCCACCATCTCCGGCACTAAA < SRR4302540.5223531/94‑1 (MQ=60)
CACGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAG‑CGGG‑GCAAAGCCACCATCTCCGGCACTAAAG < SRR4302540.2091484/94‑1 (MQ=60)
ACGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAG‑CGGG‑GCAAAGCCACCATCTCCGGCACTAAAGC > SRR4302540.7518833/1‑94 (MQ=60)
ACGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAG‑CGGG‑GCAAAGCCACCATCTCCGGCACTAAAGC < SRR4302540.6784385/94‑1 (MQ=60)
GCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAG‑CGGG‑GCAAAGCCACCATCTCCGGCACTAAAGCGG < SRR4302540.8445541/94‑1 (MQ=60)
CCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAG‑CGGG‑GCAAAGCCACCATCTCCGGCACTAAAGCGGG < SRR4302540.294973/94‑1 (MQ=60)
CAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGCGCCGCTAG‑CGGG‑GCAAAGCACACATCTCCGCGACTAAAGCGGGTCC > SRR4302540.2318499/1‑94 (MQ=55)
CAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAG‑CGGG‑GCAAAGCCACCATCTCCGGCACTAAAGCGGGGCG > SRR4302540.2318497/1‑94 (MQ=60)
AAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAG‑CGGG‑GCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGC > SRR4302540.1853219/1‑94 (MQ=60)
AAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAG‑CGGG‑GCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGC > SRR4302540.7634104/1‑94 (MQ=60)
AGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAG‑CGGG‑GCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCA > SRR4302540.8367754/1‑94 (MQ=60)
GGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAG‑CGGG‑GCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCAT > SRR4302540.4143597/1‑94 (MQ=60)
GGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAG‑CGGG‑GCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATG > SRR4302540.8066490/1‑94 (MQ=60)
TCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAG‑CGGG‑GCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGAC > SRR4302540.7462545/1‑94 (MQ=60)
CGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAG‑CGGG‑GCAAAGCGACCATCTCCGGCACTAAAGCGGGTCGCATGACC > SRR4302540.9010748/1‑94 (MQ=60)
CGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAG‑CGGG‑GCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACC > SRR4302540.404077/1‑94 (MQ=60)
CGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAG‑CGGG‑GCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACC < SRR4302540.5130309/94‑1 (MQ=60)
CGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAG‑CGGG‑GCAAAGCCACCATATCCGGCACTAAAGCGGGTCGCATGACC > SRR4302540.8094477/1‑94 (MQ=60)
GCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAG‑CGGG‑GCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCC < SRR4302540.3146086/94‑1 (MQ=60)
GCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAG‑CGGG‑GCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCC > SRR4302540.9937562/1‑94 (MQ=60)
GCTGCTGGTTAAGCTGCTGGTTATAGCGGAATAAAAGATCCGATAG‑CGGG‑GCAAAGCCCCCATCTCCGGCACTAAAGCGGGTCGCATGACCGCC < SRR4302540.3273159/94‑1 (MQ=60)
TGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAG‑CGGG‑GCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAG < SRR4302540.3974277/94‑1 (MQ=60)
TGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAG‑CGGG‑GCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAG > SRR4302540.3243800/1‑94 (MQ=60)
TGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAG‑CGGG‑GCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAG > SRR4302540.2550747/1‑94 (MQ=60)
TGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAG‑CGGG‑GCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAG > SRR4302540.8540499/1‑94 (MQ=60)
CTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAG‑CGGG‑GCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCG > SRR4302540.6935858/1‑94 (MQ=60)
CTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAG‑CGGG‑GCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCG > SRR4302540.778621/1‑94 (MQ=60)
CTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAG‑CGGG‑GCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCG > SRR4302540.9225362/1‑94 (MQ=60)
TGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAG‑CTGG‑GCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGT > SRR4302540.7651066/1‑94 (MQ=60)
TGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAG‑CGGG‑GCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGT > SRR4302540.7227173/1‑94 (MQ=60)
TGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAG‑CGGG‑GCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGT < SRR4302540.5580517/94‑1 (MQ=60)
TGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAG‑CGGG‑GCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGT > SRR4302540.9795720/1‑94 (MQ=60)
TGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAG‑CGGG‑GCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGT > SRR4302540.1578272/1‑94 (MQ=60)
GTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAG‑CGGG‑GCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTT < SRR4302540.9719792/94‑1 (MQ=60)
GTTTAAGCTGCTGGTGATAGCGGAATAAAGAAGCCGATAG‑C‑GGAGCAAAGCCACCATCTCCGGCACTAAAGCGGATCGCATGATCGCCAGCGTT > SRR4302540.1273443/1‑94 (MQ=60)
TTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAG‑CGGG‑GCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTG > SRR4302540.8899504/1‑94 (MQ=60)
TTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAG‑CGGG‑GCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTG > SRR4302540.603471/1‑94 (MQ=60)
TTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAG‑CGGG‑GCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTG > SRR4302540.3698277/1‑94 (MQ=60)
TTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAG‑CGGG‑GCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGC > SRR4302540.4181456/1‑94 (MQ=60)
TAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAG‑CGGG‑GCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCG > SRR4302540.8318177/1‑94 (MQ=60)
AAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAG‑CGGG‑GCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGG < SRR4302540.4293/94‑1 (MQ=60)
AGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAG‑CGGG‑GCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGG < SRR4302540.7399148/94‑1 (MQ=60)
AGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAG‑CGGG‑GCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGG < SRR4302540.7389602/94‑1 (MQ=60)
GCTGCTGGTGATAGCGGAATAAAGGAGCCGATAG‑CGGG‑GCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGC < SRR4302540.9105694/94‑1 (MQ=60)
GCTGCTGGTGATAGCGGAATAAAGGAGCCGATAG‑CGGG‑GCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGC > SRR4302540.719321/1‑94 (MQ=60)
GCTGCGTGTGATAGCGGAATAAAGGAGCCGATAG‑CGGG‑GCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGC < SRR4302540.9105693/94‑1 (MQ=60)
TGCTGGTGATAGCGGAATAAAGGAGCCGATAG‑CGGG‑GCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGA > SRR4302540.606725/1‑94 (MQ=60)
GCTGGTGATAGCGGAATAAAGGAGCCGATAG‑CGGG‑GCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGAT > SRR4302540.8115944/1‑94 (MQ=60)
CTGGTGATAGCGGAATAAAGGAGCCGATAG‑CGGG‑GCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATG > SRR4302540.6288062/1‑94 (MQ=60)
CTGGTGATAGCGGAATAAAGGAGCCGATAG‑CGGG‑GCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATG > SRR4302540.6288063/1‑94 (MQ=60)
TGGTGATAGCGGAATAAAGGAGCCGATAG‑CGGG‑GCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGC < SRR4302540.1972627/94‑1 (MQ=60)
TGGTGATAGCGGAATAAAGGAGCCGATAG‑CGGG‑GCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGC > SRR4302540.3477465/1‑94 (MQ=60)
TGGTGATAGCGGAATAAAGGAGCCGATAG‑CGGG‑GCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGC < SRR4302540.4110785/94‑1 (MQ=60)
TGGTGATAGCGGAATAAAGGAGCCGATAG‑CGGG‑GCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGC > SRR4302540.2125877/1‑94 (MQ=60)
TGGTGATAGCGGAATAAAGGAGCCGATAG‑CGGG‑GCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGC > SRR4302540.4767746/1‑94 (MQ=60)
GGTGATAGCGGAATAAAGGAGCCGATAG‑CGGG‑GCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCG < SRR4302540.6710528/94‑1 (MQ=60)
GTGATAGCGGAATAAAGGAGCCGATAG‑CGGG‑GCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGA > SRR4302540.9482469/1‑94 (MQ=60)
GTGATAGCGGAATAAAGGAGCCGATAG‑CGGG‑GCAAAGCCACCATCTCCGGCACTAAAGCGGGTAGCATGACCGCCAGCGTTGCGGGCGATGCGA > SRR4302540.1409178/1‑94 (MQ=60)
ggagAGCGGAAAAAAGGAGCCGATAG‑CGGG‑GCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGAT < SRR4302540.7608904/90‑1 (MQ=60)
TGATAGCGGAATAAAGGAGCCGATAG‑CGGG‑GCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGAT < SRR4302540.6775057/94‑1 (MQ=60)
TGATAGCGGAATAAAGGAGCCGATAG‑CGGG‑GCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGAT > SRR4302540.111842/1‑94 (MQ=60)
TGATAGCGGAATAAAGGAGCCGATAG‑CGGG‑GCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGAT < SRR4302540.7448015/94‑1 (MQ=60)
GTTAGCGGAATAAAGGAGCCGATAG‑CGGG‑GCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATG > SRR4302540.8916/1‑94 (MQ=60)
GATAGCGGAATAAAGGAGCCGATAG‑CGGG‑GCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATG < SRR4302540.3463787/94‑1 (MQ=60)
ATAGCGGAATAAAGGAGCCGATAG‑CGGG‑GCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGG > SRR4302540.7346157/1‑94 (MQ=60)
ATAGCGGAATAAAGGAGCCGATAG‑CGGG‑GCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGG > SRR4302540.965951/1‑94 (MQ=60)
ATAGCGGAATAAAGGAGCCGATAG‑CGGG‑GCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGG < SRR4302540.8277540/94‑1 (MQ=60)
TAGCGGAATAAAGGAGCCGATAG‑CGGG‑GCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGGA < SRR4302540.5703205/94‑1 (MQ=60)
AGCGGAATAAAGGAGCCGATAG‑CGGG‑GCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGGAT > SRR4302540.1663550/1‑94 (MQ=60)
AGCGGAATAAAGGAGCCGATAG‑CGGG‑GCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGGAT < SRR4302540.5809597/94‑1 (MQ=60)
AGCGGAATAAAGGAGCCGATAG‑CGGG‑GCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGGAT < SRR4302540.4040210/94‑1 (MQ=60)
GGAATAAAGGAGCCGATAG‑CGGG‑GCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGTTGGATTTG > SRR4302540.5935874/1‑94 (MQ=60)
GGAATAAAGGAGCCGATAG‑CGGG‑GCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGGATTTG > SRR4302540.7797519/1‑94 (MQ=60)
GGAATAAAGGAGCCGATAG‑CGGG‑GCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGGATTTG > SRR4302540.1912989/1‑94 (MQ=60)
GGAATAAAGGAGCCGATAG‑CGGG‑GCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGGATTTG < SRR4302540.3481148/94‑1 (MQ=60)
GAATAAAGGAGCCGATAG‑CGGG‑GCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGGCTTTGA > SRR4302540.4289213/1‑94 (MQ=60)
GAATAAAGGAGCCGATAG‑CGGG‑GCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGGATTTGA < SRR4302540.8441875/94‑1 (MQ=60)
ATAAAGGAGCCTATAG‑CGGG‑GCAAAGCCACCATCTCCGGCACTCAAGCGGGTCGCATGCCCGCCAGCGTTGCGGGCCATGCGATGGATTTGATT < SRR4302540.8822268/94‑1 (MQ=60)
ATAAAGGAGCCGATAG‑CGGG‑GCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGGATTTGATT < SRR4302540.3720475/94‑1 (MQ=60)
ATAAAGGAGCCGATAG‑CGGG‑GCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGGATTTGATT < SRR4302540.3458729/94‑1 (MQ=60)
ATAAAGGAGCCGATAG‑CGGG‑GCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGGATTTGATT < SRR4302540.8822269/94‑1 (MQ=60)
TAAAGGAGCCGATAG‑CGGG‑GCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGGATTTGATTG < SRR4302540.8900290/94‑1 (MQ=60)
TAAAGGAGCCGATAG‑CGGG‑GCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGGATTTGATTG < SRR4302540.4998228/94‑1 (MQ=60)
AAAAGGAGCCGATAG‑CGGG‑GCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGGATTTGATTG < SRR4302540.5602198/94‑1 (MQ=60)
AAGGAGCCGATAG‑CGGG‑GCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGGATTTGATTGTC > SRR4302540.1530620/1‑94 (MQ=60)
AAGGAGCCGATAG‑CGGG‑GCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGGATTTGATTGTC < SRR4302540.2316512/94‑1 (MQ=60)
AGGAGCCGATAG‑CTGG‑GGAAAGCCATGATCTCCGGCACTAAAGCGGGTCGCATGACCTCCAGCGTTGCGGGCGATGCGATGGATTTGATTGTCC < SRR4302540.5601432/94‑1 (MQ=60)
AGGAGCCGATAG‑CGGG‑GCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGGATTTGATTGTCC < SRR4302540.5601431/94‑1 (MQ=60)
AGGAGCCGATAG‑CGGG‑GCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGGATTTGATTGTCC < SRR4302540.5601433/94‑1 (MQ=60)
AGGAGCCGATAG‑CGGG‑GCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGGATTTGATTGTCC > SRR4302540.6001530/1‑94 (MQ=60)
AGGAGCCGATAG‑CGGG‑GCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGGATTTGATTGTCC < SRR4302540.4044503/94‑1 (MQ=60)
GAGCCGATAG‑CGGG‑GCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGGATTTGATTGTCCTC < SRR4302540.6564654/94‑1 (MQ=60)
GCCGATAG‑CGGG‑GCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGGATTTGATTGTCCTCGG < SRR4302540.1850797/94‑1 (MQ=60)
CCGATAG‑CGGG‑GCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGGATTTGATTGTCCTCGGC > SRR4302540.7979821/1‑94 (MQ=60)
CCGATAG‑CGGG‑GCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGCTGCGGGCGATGCGATGGATTTGATTGTCCTCGGG > SRR4302540.5179627/1‑94 (MQ=60)
CGATAG‑CGGG‑GCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGGATTTGATTGTCCTCGGCT > SRR4302540.3567850/1‑94 (MQ=60)
CGATAG‑CGGG‑GCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGGATTTGATTGTCCTCGGCT > SRR4302540.3567851/1‑94 (MQ=60)
CGATAG‑CGGG‑GCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGGATTTGATTGTCCTCGGCT > SRR4302540.1461540/1‑94 (MQ=60)
GATAG‑CGGG‑GCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGGATTTGATTGTCCTCGGCTG > SRR4302540.622613/1‑94 (MQ=60)
ATAG‑CGGG‑GCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGGATTTGATTGTCCTCGGCTGT > SRR4302540.2262782/1‑94 (MQ=60)
TAG‑CGGG‑GCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGGATTTGATTGTCCTCGGCTGTG > SRR4302540.8823185/1‑94 (MQ=60)
TAG‑CGGG‑GCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGGATTTGATTGTCCTCGGCTGTC > SRR4302540.8823187/1‑94 (MQ=60)
AG‑CGGG‑GCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGGATTTGATTGTCCTCGGCTGTCG < SRR4302540.857033/94‑1 (MQ=60)
AG‑CGGG‑GCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGGATTTGATTGTCCTCGGCTGTCG < SRR4302540.7609551/94‑1 (MQ=60)
AG‑CGGG‑GCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGGATTTGATTGTCCTCGGCTGTCG > SRR4302540.2545436/1‑94 (MQ=60)
AG‑CGGG‑GCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGGATTTGATTGTCCTCGGCTGCCG < SRR4302540.7560815/94‑1 (MQ=60)
G‑GG‑GCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGGATTTGATTGTCCTCGGCTGTCGATT > SRR4302540.2354515/1‑94 (MQ=60)
G‑GCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGGATTTGATTGTCCTCGGCTGTCGATTTC < SRR4302540.4338828/94‑1 (MQ=60)
GCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGGATTTGATTGTCCTCGGCTGTCGATTTCA < SRR4302540.4988678/94‑1 (MQ=60)
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TTCCGCGTACATGCGACCGGGGTTAAACACGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAG‑C‑GG‑GCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGGATTTGATTGTCCTCGGCTGTCGATTTCA > NC_000913/3123492‑3123678
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
