Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	1548	369.5	20095359	96.9%	19472402	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,358,838	G→A	A10T (GCT→ACT)	gltF →	GltF

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,358,838	0	G	A	99.2%	874.5 / ‑5.5	240	A10T (GCT→ACT)	gltF	GltF
Reads supporting (aligned to +/- strand): ref base G (2/0); new base A (212/25); total (215/25)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 251 total aligned reads displayed.

GATATATATACTGCTTCAGCTTTTTATTTTAAAAAATAAATTTGTTATTAAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAGCTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTGATACAGAATTAACTATCATCGGCGAGTA  >  NC_000913/3358748‑3358926

    tatataCTGCTTCAGCTTTTTATTTTAAAAAATAAATTTGTTATTAAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTa                                                                                    >  2:9065472/1‑93 (MQ=255)

    tatataCTGCTTCAGCTTTTTATTTTAAAAAATAAATTTGTTATTAAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTa                                                                                    <  2:5845291/93‑1 (MQ=255)

       ataCTGCTTCAGCTTTTTATTTTAAAAAATAAATTTGTTATTAAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTAttt                                                                                 >  1:9754431/1‑93 (MQ=255)

          cTGCTTCAGCTTTTTATTTTAAAAAATAAATTTGTTATTAAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTtgtg                                                                              >  2:4346217/1‑93 (MQ=255)

          cTGCTTCAGCTTTTTATTTTAAAAAATAAATTTGTTATTAAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTtgtg                                                                              >  1:176870/1‑93 (MQ=255)

            gCTTCAGCTTTTTATTTTAAAAAATAAATTTGTTATTAAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTgca                                                                            >  2:8839914/1‑93 (MQ=255)

            gCTTCAGCTTTTTATTTTAAAAAATAAATTTGTTATTAAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTgca                                                                            >  2:1435436/1‑93 (MQ=255)

              ttCAGCTTTTTATTTTAAAAAATAAATTTGTTATTAAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTgcagc                                                                          >  2:2825400/1‑93 (MQ=255)

               tCAGCTTTTTATTTTAAAAAATAAATTTGTTATTAAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTgcagca                                                                         >  1:2746155/1‑93 (MQ=255)

                 aGCTTTTTATTTTAAAAAATAAATTTGTTATTAAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACt                                                                       >  2:2105699/1‑93 (MQ=255)

                    tttttATTTTAAAAAATAAATTTGTTATTAAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTc                                                                    >  1:7000628/1‑93 (MQ=255)

                     ttttattttaAAAAATAAATTTGTTATTAAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCt                                                                   <  2:9802496/93‑1 (MQ=255)

                        tattttaAAAAATAAATTTGTTATTAAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGtt                                                                <  2:1236187/93‑1 (MQ=255)

                        tattttaAAAAATAAATTTGTTATTAAGGATATGGTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGtt                                                                >  1:1070778/1‑93 (MQ=255)

                          ttttaAAAAATAAATTTGTTATTAAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTgc                                                              >  2:3993148/1‑93 (MQ=255)

                          ttttaAAAAATAAATTTGTTATTAAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTgc                                                              >  2:7327591/1‑93 (MQ=255)

                            ttaAAAAATAAATTTGTTATTAAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTgcag                                                            >  1:6605173/1‑93 (MQ=255)

                             taAAAAATAAATTTGTTATTAAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTgcagc                                                           >  2:6928369/1‑93 (MQ=255)

                             taAAAAATAAATTTGTTATTAAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTgcagc                                                           >  2:7433616/1‑93 (MQ=255)

                             taAAAAATAAATTTGTTATTAAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTgcagc                                                           >  2:8211381/1‑93 (MQ=255)

                               aaaaaTAAATTTGTTATTAAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCAt                                                         >  1:1171560/1‑93 (MQ=255)

                               aaaaaTAAATTTGTTATTAAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCAt                                                         >  2:7256757/1‑93 (MQ=255)

                                aaaaTAAATTTGTTATTAAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCAtt                                                        >  1:4639321/1‑93 (MQ=255)

                                aaaaTAAATTTGTTATTAAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCAtt                                                        >  1:686217/1‑93 (MQ=255)

                                aaaaTAAATTTGTTATTAAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCAtt                                                        >  2:7000298/1‑93 (MQ=255)

                                 aaataaatTTGTTATTAAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTc                                                       >  1:8101861/1‑93 (MQ=255)

                                   ataaatTTGTTATTAAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAg                                                     >  2:4054076/1‑93 (MQ=255)

                                     aaatTTGTTATTAAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTg                                                   >  1:2687174/1‑93 (MQ=255)

                                       atTTGTTATTAAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGcc                                                 >  2:3592129/1‑93 (MQ=255)

                                       atTTGTTATTAAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGcc                                                 >  2:2214883/1‑93 (MQ=255)

                                       atTTGTTATTAAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGcc                                                 >  2:8405890/1‑93 (MQ=255)

                                         ttGTTATTAAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCAt                                               >  2:3356200/1‑93 (MQ=255)

                                         ttGTTATTAAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTATGTTGCAGCATTCAGTGCCAt                                               >  1:6381526/1‑93 (MQ=255)

                                         ttGTTATTAAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTGTCTGTTGCAGCATTCAGTGCCAt                                               >  2:5609889/1‑93 (MQ=255)

                                          tGTTATTAAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATg                                              >  1:7315222/1‑93 (MQ=255)

                                          tGTTATTAAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATg                                              >  2:5066897/1‑93 (MQ=255)

                                           gTTATTAAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATgg                                             >  2:1067753/1‑93 (MQ=255)

                                           gTTATTAAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATgg                                             >  1:7843668/1‑93 (MQ=255)

                                             tattaAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCa                                           >  1:6071691/1‑93 (MQ=255)

                                             tattaAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCa                                           >  2:9325779/1‑93 (MQ=255)

                                              attaAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCaa                                          >  1:9658754/1‑93 (MQ=255)

                                              attaAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCaa                                          >  1:2092858/1‑93 (MQ=255)

                                              attaAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCaa                                          >  2:8544872/1‑93 (MQ=255)

                                               ttaAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAAc                                         >  2:9736893/1‑93 (MQ=255)

                                               ttaAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAAc                                         >  2:3106634/1‑93 (MQ=255)

                                                  aGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGa                                      >  2:1126561/1‑93 (MQ=255)

                                                  aGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGa                                      >  2:7442187/1‑93 (MQ=255)

                                                  aGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGa                                      >  1:2513485/1‑93 (MQ=255)

                                                  aGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGa                                      >  2:3887530/1‑93 (MQ=255)

                                                   ggATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGAt                                     >  2:7457226/1‑93 (MQ=255)

                                                    gATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGAtt                                    >  1:2150909/1‑93 (MQ=255)

                                                    gATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGAtt                                    >  1:1103023/1‑93 (MQ=255)

                                                    gATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGAtt                                    >  2:3277468/1‑93 (MQ=255)

                                                     atgtGTTCATATGTTTTTCAAAAAGAACCTCACAACAGCTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTc                                   >  2:5720457/4‑93 (MQ=255)

                                                     atatGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTc                                   <  2:5855784/93‑1 (MQ=255)

                                                      tttGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCTATGGCAACAGATTCa                                  >  1:8942837/3‑93 (MQ=255)

                                                      tatGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCa                                  >  2:2934680/1‑93 (MQ=255)

                                                      tatGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCa                                  >  1:8014620/1‑93 (MQ=255)

                                                       atGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCaa                                 <  2:596013/93‑1 (MQ=255)

                                                       atGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCaa                                 >  2:7380849/1‑93 (MQ=255)

                                                       atGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCaa                                 <  1:5608050/93‑1 (MQ=255)

                                                        tGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAAc                                >  1:8102167/1‑93 (MQ=255)

                                                        tGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAAc                                >  2:6512705/1‑93 (MQ=255)

                                                         gTTCATATGTTTTTCAAAAAGAACCTCACAACATCTGCTATCTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACt                               >  1:4973586/1‑93 (MQ=255)

                                                         gTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACt                               >  1:469837/1‑93 (MQ=255)

                                                          ttCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTg                              >  2:943848/1‑93 (MQ=255)

                                                          ttCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTg                              >  2:9522801/1‑93 (MQ=255)

                                                            cATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTGAt                            >  1:8630284/1‑93 (MQ=255)

                                                            cATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTGAt                            <  1:1435436/93‑1 (MQ=255)

                                                             atatGTTTTTCAAAAAGAACCTCACAACAGCTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTGATa                           >  1:3182920/1‑93 (MQ=255)

                                                             atatGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTGATa                           >  2:7957966/1‑93 (MQ=255)

                                                               atGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTGATACa                         >  2:4667226/1‑93 (MQ=255)

                                                                tGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCaa                                 <  1:7626683/84‑1 (MQ=255)

                                                                tGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTGATACAg                        >  2:825251/1‑93 (MQ=255)

                                                                 gTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTGATACAGa                       >  2:5682389/1‑93 (MQ=255)

                                                                 gTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTGATACAGa                       >  1:9171373/1‑93 (MQ=255)

                                                                   ttttCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTGATACAGAAt                     >  1:3861728/1‑93 (MQ=255)

                                                                   ttttCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTGATACAGAAt                     >  1:8814668/1‑93 (MQ=255)

                                                                    tttCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTGATACAGAAtt                    >  1:4814148/1‑93 (MQ=255)

                                                                    tttCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTGATACAGAAtt                    >  1:7535704/1‑93 (MQ=255)

                                                                       cAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTGATACAGAATTAAc                 >  1:1890900/1‑93 (MQ=255)

                                                                        aaaaaGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTGATACAGAATTAACt                >  2:9146516/1‑93 (MQ=255)

                                                                         aaaaGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTGATACAGAATTAACTa               >  1:9968398/1‑93 (MQ=255)

                                                                            aGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTGATACAGAATTAACTatca            >  2:756963/1‑93 (MQ=255)

                                                                            aGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTGATACAGAATTAACTatca            >  2:1874453/1‑93 (MQ=255)

                                                                             gAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTGATACAGAATTAACTatcat           >  2:7841650/1‑93 (MQ=255)

                                                                             gAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTGATACAGAATTAACTatcat           >  1:1348666/1‑93 (MQ=255)

                                                                             gAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTGATACAGAATTAACTatcat           >  2:2405018/1‑93 (MQ=255)

                                                                              aaCCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTGATACAGAATTAACTatcatc          >  2:7550937/1‑93 (MQ=255)

                                                                              aaCCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTGATACAGAATTAACTatcatc          >  1:5683903/1‑93 (MQ=255)

                                                                               aCCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTGATACAGAATTAACTATCATCg         >  2:8309030/1‑93 (MQ=255)

                                                                               aCCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTGATACAGAATTAACTATCATCg         >  1:994511/1‑93 (MQ=255)

                                                                                ccTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTGATACAGAATTAACTATCATCgg        >  1:7109176/1‑93 (MQ=255)

                                                                                ccTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTGATACAGAATTAACTATCATCgg        <  1:138148/93‑1 (MQ=255)

                                                                                ccTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTGATACAGAATTAACTATCATCgg        >  2:4252580/1‑93 (MQ=255)

                                                                                 cTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTGATACAGAATTAACTATCATCGGc       >  1:5901507/1‑93 (MQ=255)

                                                                                 cTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTGATACAGAATTAACTATCATCGGc       >  2:1973241/1‑93 (MQ=255)

                                                                                  tCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTGATACAGAATTAACTATCATCGGCg      >  2:6822238/1‑93 (MQ=255)

                                                                                     caacaaCTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTGATACAGAATTAACTATCATCGGCGAGt   <  2:3229040/93‑1 (MQ=255)

                                                                                     caacaaCTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTGATACAGAATTAACTATCATCGGCGAGt   <  1:2825400/93‑1 (MQ=255)

GATATATATACTGCTTCAGCTTTTTATTTTAAAAAATAAATTTGTTATTAAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAGCTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTGATACAGAATTAACTATCATCGGCGAGTA  >  NC_000913/3358748‑3358926

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 26 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

AGATATATATACTGCTTCAGCTTTTTATTTTAAAAAATAAATTTGTTATTAAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAGCTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTGATACAGAATTAACTATCATCGGCGAGTATACC  >  NC_000913/3358747‑3358930

AGATATATATACTGCTTCAGCTTTTTATTTTAAAAAATAAATTTGTTATTAAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACT                                                                                            >  SRR4302540.7739153/1‑94 (MQ=60)

      ATATACTGCTTCAGCTTTTTATTTTAAAAAATAAATTTGTTATTAAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATT                                                                                      >  SRR4302540.1386961/1‑94 (MQ=60)

       TATACTGCTTCAGCTTTTTATTTTAAAAAATAAATTTGTTATTAAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTT                                                                                     >  SRR4302540.8176586/1‑94 (MQ=60)

       TATACTGCTTCAGCTTTTTATTTTAAAAAATAAATTTGTTATTAAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTT                                                                                     >  SRR4302540.9868871/1‑94 (MQ=60)

          ACTGCTTCAGCTTTTTATTTTAAAAAATAAATTTGTTATTAAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTG                                                                                  >  SRR4302540.178631/1‑94 (MQ=60)

           CTGCTTCAGCTTTTTATTTTAAAAAATAAATTTGTTATTAAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGC                                                                                 >  SRR4302540.67690/1‑94 (MQ=60)

             GCTTCAGCTTTTTATTTTAAAAAATAAATTTGTTATTAAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAG                                                                               >  SRR4302540.1889011/1‑94 (MQ=60)

               TTCAGCTTTTTATTTTAAAAAATAAATTTGTTATTAAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCA                                                                             >  SRR4302540.2775815/1‑94 (MQ=60)

                    CTTTTTATTTTAAAAAATAAATTTGTTATTAAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTC                                                                        >  SRR4302540.7078312/1‑94 (MQ=60)

                        TTATTTTAAAAAATAAATTTGTTATTAAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTT                                                                    >  SRR4302540.1081698/1‑94 (MQ=60)

                        TTATTTTAAAAAATAAATTTGTTATTAAGGATATGGTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTT                                                                    >  SRR4302540.1081697/1‑94 (MQ=60)

                           TTTTAAAAAATAAATTTGTTATTAAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCA                                                                 >  SRR4302540.7653896/1‑94 (MQ=60)

                            TTTAAAAAATAAATTTGTTATTAAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAG                                                                >  SRR4302540.6678314/1‑94 (MQ=60)

                            TTTAAAAAATAAATTTGTTATTAAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAG                                                                >  SRR4302540.8836125/1‑94 (MQ=60)

                             TTAAAAAATAAATTTGTTATTAAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGC                                                               >  SRR4302540.1412847/1‑94 (MQ=60)

                             TTAAAAAATAAATTTGTTATTAAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGC                                                               >  SRR4302540.1137232/1‑94 (MQ=60)

                               AAAAAATAAATTTGTTATTAAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCAT                                                             <  SRR4302540.2029833/94‑1 (MQ=60)

                               AAAAAATAAATTTGTTATTAAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCAT                                                             >  SRR4302540.1183689/1‑94 (MQ=60)

                                AAAAATAAATTTGTTATTAAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATT                                                            >  SRR4302540.693580/1‑94 (MQ=60)

                                AAAAATAAATTTGTTATTAAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATT                                                            >  SRR4302540.702623/1‑94 (MQ=60)

                                AAAAATAAATTTGTTATTAAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATT                                                            >  SRR4302540.4688992/1‑94 (MQ=60)

                                 AAAATAAATTTGTTATTAAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTC                                                           >  SRR4302540.8195895/1‑94 (MQ=60)

                                 AAAATAAATTTGTTATTAAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTC                                                           >  SRR4302540.5260137/1‑94 (MQ=60)

                                  AAATAAATTTGTTATTAAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCA                                                          >  SRR4302540.861280/1‑94 (MQ=60)

                                  AAATAAATTTGTTATTAAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCA                                                          >  SRR4302540.2135863/1‑94 (MQ=60)

                                    ATAAATTTGTTATTAAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGT                                                        >  SRR4302540.2688246/1‑94 (MQ=60)

                                    ATAAATTTGTTATTAAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGT                                                        >  SRR4302540.74430/1‑94 (MQ=60)

                                     TAAATTTGTTATTAAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTG                                                       >  SRR4302540.2716219/1‑94 (MQ=60)

                                        ATTTGTTATTAAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCA                                                    >  SRR4302540.4931547/1‑94 (MQ=60)

                                         TTTGTTATTAAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTATGTTGCAGCATTCAGTGCCAT                                                   >  SRR4302540.6452572/1‑94 (MQ=60)

                                          TTGTTATTAAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATG                                                  >  SRR4302540.7396909/1‑94 (MQ=60)

                                           TGTTATTAAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGG                                                 >  SRR4302540.4846776/1‑94 (MQ=60)

                                           TGTTATTAAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGG                                                 >  SRR4302540.2822319/1‑94 (MQ=60)

                                           TGTTATTAAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGG                                                 >  SRR4302540.2271335/1‑94 (MQ=60)

                                           TGTTATTAAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGG                                                 >  SRR4302540.7935318/1‑94 (MQ=60)

                                            GTTATTAAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGC                                                >  SRR4302540.2099142/1‑94 (MQ=60)

                                            GTTATTAAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGC                                                >  SRR4302540.6421449/1‑94 (MQ=60)

                                             TTATTAAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCA                                               >  SRR4302540.6139195/1‑94 (MQ=60)

                                             TTATTAAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCA                                               >  SRR4302540.4171193/1‑94 (MQ=60)

                                             TTATTAAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCA                                               >  SRR4302540.3761505/1‑94 (MQ=60)

                                              TATTAAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAA                                              >  SRR4302540.9772452/1‑94 (MQ=60)

                                              TATTAAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAA                                              >  SRR4302540.2115329/1‑94 (MQ=60)

                                               ATTAAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAAC                                             >  SRR4302540.5786256/1‑94 (MQ=60)

                                               ATTAAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAAC                                             >  SRR4302540.2747965/1‑94 (MQ=60)

                                               ATTAAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAAC                                             >  SRR4302540.2740473/1‑94 (MQ=60)

                                                TTAAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACA                                            >  SRR4302540.7554937/1‑94 (MQ=60)

                                                TTAAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACA                                            >  SRR4302540.4718783/1‑94 (MQ=60)

                                                TTAAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACA                                            >  SRR4302540.8403895/1‑94 (MQ=60)

                                                  AAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGA                                          >  SRR4302540.2234313/1‑94 (MQ=60)

                                                  AAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGA                                          >  SRR4302540.1119504/1‑94 (MQ=60)

                                                  AAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGA                                          >  SRR4302540.2540638/1‑94 (MQ=60)

                                                  AAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAATGCCATGGCAACAGA                                          >  SRR4302540.9101265/1‑94 (MQ=60)

                                                   AGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGAT                                         >  SRR4302540.7900279/1‑94 (MQ=60)

                                                    GGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATT                                        >  SRR4302540.2174039/1‑94 (MQ=60)

                                                    GGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATT                                        >  SRR4302540.4239724/1‑94 (MQ=60)

                                                    GGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATT                                        >  SRR4302540.1114390/1‑94 (MQ=60)

                                                     GATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTC                                       >  SRR4302540.5967675/1‑94 (MQ=60)

                                                      ATTTGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCTATGGCAACAGATTCA                                      >  SRR4302540.9047883/1‑94 (MQ=60)

                                                      ATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCA                                      >  SRR4302540.8194828/1‑94 (MQ=60)

                                                      ATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCA                                      >  SRR4302540.6528207/1‑94 (MQ=60)

                                                      ATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCA                                      >  SRR4302540.8107844/1‑94 (MQ=60)

                                                       TATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAA                                     >  SRR4302540.3063791/1‑94 (MQ=60)

                                                        tagcgctTATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAAC                                    <  SRR4302540.7712458/87‑1 (MQ=60)

                                                        ATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAAC                                    >  SRR4302540.8196205/1‑94 (MQ=60)

                                                        ATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAAC                                    <  SRR4302540.5669749/94‑1 (MQ=60)

                                                        ATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAAC                                    >  SRR4302540.8196204/1‑94 (MQ=60)

                                                         TGTTCATATGTTTTTCAAAAAGAACCTCACAACATCTGCTATCTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACT                                   >  SRR4302540.5027408/1‑94 (MQ=60)

                                                         TGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACT                                   >  SRR4302540.474866/1‑94 (MQ=60)

                                                            TCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTGAT                                >  SRR4302540.6686275/1‑94 (MQ=60)

                                                            TCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTGAT                                >  SRR4302540.7359640/1‑94 (MQ=60)

                                                            TCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTGAT                                >  SRR4302540.7149265/1‑94 (MQ=60)

                                                            TCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTGAT                                >  SRR4302540.8730527/1‑94 (MQ=60)

                                                            TCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGAATTCAGTGCCATGCCACCAGATTCAACTGAT                                >  SRR4302540.7149264/1‑94 (MQ=60)

                                                             CATATGTTTTTCAAAAAGAACCTCACAACAGCTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTGATA                               >  SRR4302540.3217504/1‑94 (MQ=60)

                                                             CATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTGATA                               >  SRR4302540.10067242/1‑94 (MQ=60)

                                                             CATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTGATA                               <  SRR4302540.1450998/94‑1 (MQ=60)

                                                             CATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTGATA                               >  SRR4302540.5945913/1‑94 (MQ=60)

                                                              ATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTGATAC                              >  SRR4302540.1388360/1‑94 (MQ=60)

                                                              ATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTGATAC                              >  SRR4302540.9782048/1‑94 (MQ=60)

                                                              ATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTGATAC                              >  SRR4302540.9675434/1‑94 (MQ=60)

                                                                 TGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTGATACAGA                           >  SRR4302540.896802/1‑94 (MQ=60)

                                                                 TGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTGATACAGA                           >  SRR4302540.9281389/1‑94 (MQ=60)

                                                                  GTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTGATACAGAA                          >  SRR4302540.3022000/1‑94 (MQ=60)

                                                                   TTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTGATACAGAAT                         >  SRR4302540.3903703/1‑94 (MQ=60)

                                                                   TTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTGATACAGAAT                         >  SRR4302540.8916583/1‑94 (MQ=60)

                                                                    TTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTGATACAGAATT                        >  SRR4302540.4865676/1‑94 (MQ=60)

                                                                    TTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTGATACAGAATT                        >  SRR4302540.7620105/1‑94 (MQ=60)

                                                                    TTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTGATACAGAATT                        >  SRR4302540.4865675/1‑94 (MQ=60)

                                                                      TTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTGATACAGAATTAA                      >  SRR4302540.8050407/1‑94 (MQ=60)

                                                                      TTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTGATACAGAATTAA                      >  SRR4302540.5209990/1‑94 (MQ=60)

                                                                       TCAAAAAGGACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTGATACAGAATTAAC                     >  SRR4302540.9022174/1‑94 (MQ=60)

                                                                       TCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTGATACAGAATTAAC                     >  SRR4302540.1911598/1‑94 (MQ=60)

                                                                         AAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTGATACAGAATTAACTA                   >  SRR4302540.10084688/1‑94 (MQ=60)

                                                                             AGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTGATACAGAATTAACTATCAT               >  SRR4302540.1362834/1‑94 (MQ=60)

                                                                              GAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTGATACAGAATTAACTATCATC              >  SRR4302540.5746481/1‑94 (MQ=60)

                                                                               AACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTGATACAGAATTAACTATCATCG             >  SRR4302540.1004641/1‑94 (MQ=60)

                                                                                ACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTGATACAGAATTAACTATCATCGG            >  SRR4302540.7188295/1‑94 (MQ=60)

                                                                                 CCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTGATACAGAATTAACTATCATCGGC           >  SRR4302540.5966676/1‑94 (MQ=60)

                                                                                 CCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTGATACAGAATTAACTATCATCGGC           <  SRR4302540.139590/94‑1 (MQ=60)

                                                                                  CTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTGATACAGAATTAACTATCATCGGCG          >  SRR4302540.5683101/1‑94 (MQ=60)

                                                                                  CTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTGATACAGAATTAACTATCATCGGCG          >  SRR4302540.9761121/1‑94 (MQ=60)

                                                                                    CACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTGATACAGAATTAACTATCATCGGCGAG        >  SRR4302540.9934862/1‑94 (MQ=60)

                                                                                    CACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTGATACAGAAATAACTATCATCGGCGAG        >  SRR4302540.6195284/1‑94 (MQ=60)

                                                                                      CAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTGATACAGAATTAACTATCATCGGCGAGTA      >  SRR4302540.10012302/1‑94 (MQ=60)

                                                                                      CAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTGATACAGAATTAACTATCATCGGCGAGTA      <  SRR4302540.2855931/94‑1 (MQ=60)

                                                                                      CAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTGATACAGAATTAACTATCATCGGCGAGTA      >  SRR4302540.1723340/1‑94 (MQ=60)

                                                                                      CAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTGATACAGAATTAACTATCATCGGCGAGTA      >  SRR4302540.1474541/1‑94 (MQ=60)

                                                                                      CAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTGATACAGAATTAACTATCATCGGCGAGTA      <  SRR4302540.1292900/94‑1 (MQ=60)

                                                                                        ACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTGATACAGAATTAACTATCATCGGCGAGTATA    >  SRR4302540.79649/1‑94 (MQ=60)

                                                                                         CAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTGATACAGAATTAACTATCATCGGCGAGTATAC   >  SRR4302540.2375715/1‑94 (MQ=60)

                                                                                          AACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTGATACAGAATTAACTATCATCGGCGAGTATACC  >  SRR4302540.6652946/1‑94 (MQ=60)

                                                                                          AACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTGATACAGAATTAACTATCATCGGCGAGTATACC  >  SRR4302540.6652692/1‑94 (MQ=60)

AGATATATATACTGCTTCAGCTTTTTATTTTAAAAAATAAATTTGTTATTAAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAGCTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTGATACAGAATTAACTATCATCGGCGAGTATACC  >  NC_000913/3358747‑3358930

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 31 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`