Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 1624 250.6 12620048 98.0% 12367647 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,358,838 G→A A10T (GCT→ACT)  gltF → GltF

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,358,8380GA100.0% 525.0 / NA 139A10T (GCT→ACT) gltFGltF
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (129/10);  total (129/10)

Only 100 of 143 total aligned reads displayed.

ATACTGCTTCAGCTTTTTATTTTAAAAAATAAATTTGTTATTAAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAGCTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTGATACAGAATTAACTATCATCGGCGAGTAT  >  NC_000913/3358755‑3358927
                                                                                   |                                                                                         
ataCTGCTTCAGCTTTTTATTTTAAAAAATAAATTTGTTATTAAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTAttt                                                                                  >  2:2816299/1‑93 (MQ=255)
   cTGCTTCATCTTTTTATTTTAAAAAATAAATTTGTTATTAAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTtgtg                                                                               <  2:4945038/93‑1 (MQ=255)
    tGCTTCAGCTTTTTATTTTAAAAAATAAATTTGTTATTAAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTgc                                                                              >  1:5199575/1‑93 (MQ=255)
     gCTTCAGCTTTTTATTTTAAAAAATAAATTTGTTATTAAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTgca                                                                             >  2:5565333/1‑93 (MQ=255)
        tCAGCTTTTTATTTTAAAAAATAAATTTGTTATTAAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTgcagca                                                                          >  1:2597625/1‑93 (MQ=255)
             tttttATTTTAAAAAATAAATTTGTTATTAAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTc                                                                     >  1:3071595/1‑93 (MQ=255)
             tttttATTTTAAAAAATAAATTTGTTATTAAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTc                                                                     >  2:4196085/1‑93 (MQ=255)
             tttttATTTTAAAAAATAAATTTGTTATTAAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTc                                                                     <  1:2262375/93‑1 (MQ=255)
                ttattttaAAAAATAAATTTGTTATTAAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGt                                                                  >  1:435177/1‑93 (MQ=255)
                     ttaAAAAATAAATTTGTTATTAAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTgcag                                                             >  1:648727/1‑93 (MQ=255)
                     ttaAAAAATAAATTTGTTATTAAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTgcag                                                             >  1:2792729/1‑93 (MQ=255)
                     ttaAAAAATAAATTTGTTATTAAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTgcag                                                             >  1:2274824/1‑93 (MQ=255)
                     ttaAAAAATAAATTTGTTATTAAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTgcag                                                             >  2:1437120/1‑93 (MQ=255)
                        aaaaaTAAATTTGTTATTAAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCAt                                                          >  2:526046/1‑93 (MQ=255)
                        aaaaaTAAATTTGTTATTAAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCAt                                                          >  1:3688688/1‑93 (MQ=255)
                         aaaaTAAATTTGTTATTAAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCAtt                                                         >  1:4765841/1‑93 (MQ=255)
                         aaaaTAAATTTGTTATTAAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCAtt                                                         >  2:3396638/1‑93 (MQ=255)
                           aataaatTTGTTATTAAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCa                                                       >  1:27800/1‑93 (MQ=255)
                           aataaatTTGTTATTAAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCa                                                       >  2:1035319/1‑93 (MQ=255)
                           aataaatTTGTTATTAAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCa                                                       >  2:1014857/1‑93 (MQ=255)
                           aataaatTTGTTATTAAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCa                                                       >  1:4020702/1‑93 (MQ=255)
                            ataaatTTGTTATTAAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAg                                                      <  2:2182717/93‑1 (MQ=255)
                            ataaatTTGTTATTAAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAg                                                      >  1:1683202/1‑93 (MQ=255)
                              aaatTTGTTATTAAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTg                                                    >  1:3416967/1‑93 (MQ=255)
                              aaatTTGTTATTAAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTg                                                    >  1:5582490/1‑93 (MQ=255)
                               aatTTGTTATTAAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGc                                                   >  1:3849156/1‑93 (MQ=255)
                                 tttGTTATTAAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCa                                                 >  1:4771534/1‑93 (MQ=255)
                                  ttGTTATTAAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCAt                                                >  1:1980083/1‑93 (MQ=255)
                                    gTTATTAAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATgg                                              >  2:4602415/1‑93 (MQ=255)
                                    gTTATTAAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATgg                                              >  1:1190635/1‑93 (MQ=255)
                                    gTTATTAAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATgg                                              >  2:5736866/1‑93 (MQ=255)
                                     ttattaAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGc                                             >  1:4480679/1‑93 (MQ=255)
                                     ttattaAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGc                                             >  1:5154294/1‑93 (MQ=255)
                                     ttattaAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGc                                             >  1:738702/1‑93 (MQ=255)
                                      tattaAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCa                                            >  2:1736355/1‑93 (MQ=255)
                                      tattaAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCa                                            >  2:6286876/1‑93 (MQ=255)
                                      tattaAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCa                                            >  2:1879043/1‑93 (MQ=255)
                                       attaAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCaa                                           >  2:2264344/1‑93 (MQ=255)
                                        ttaAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAAc                                          >  2:1351529/1‑93 (MQ=255)
                                        ttaAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAAc                                          >  1:2535514/1‑93 (MQ=255)
                                         taAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACa                                         >  2:607908/1‑93 (MQ=255)
                                         taAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACa                                         >  1:423898/1‑93 (MQ=255)
                                          aaGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAg                                        >  2:3823227/1‑93 (MQ=255)
                                           aGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGa                                       >  1:2538718/1‑93 (MQ=255)
                                           aGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACAGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGa                                       >  1:3375222/1‑93 (MQ=255)
                                             gATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGAtt                                     >  1:1515241/1‑93 (MQ=255)
                                             gATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGAtt                                     >  1:4937599/1‑93 (MQ=255)
                                             gATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGAtt                                     >  2:5776379/1‑93 (MQ=255)
                                             gATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTATTGCAGCATTCAGTGCCATGGCAACAGAtt                                     >  2:3279756/1‑93 (MQ=255)
                                              atatGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTc                                    <  1:4564936/93‑1 (MQ=255)
                                               tatGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCa                                   >  1:5016323/1‑93 (MQ=255)
                                               tatGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCa                                   >  1:4223763/1‑93 (MQ=255)
                                               tatGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCa                                   >  2:4612303/1‑93 (MQ=255)
                                                 tGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAAc                                 >  1:4872578/1‑93 (MQ=255)
                                                  gTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCGGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACt                                >  2:5695259/1‑93 (MQ=255)
                                                  gTTCATATGTTTTTCAAAAAGAACATCACAACAACTGCTATTTGTGCAACAATTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACt                                >  2:5100389/1‑93 (MQ=255)
                                                   ttCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTg                               >  1:1123406/1‑93 (MQ=255)
                                                   ttCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTg                               >  1:651561/1‑93 (MQ=255)
                                                   ttCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTg                               >  2:3553166/1‑93 (MQ=255)
                                                   ttCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTg                               >  2:5388706/1‑93 (MQ=255)
                                                    tCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTGa                              >  1:740226/1‑93 (MQ=255)
                                                    tCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTGa                              <  1:5538658/93‑1 (MQ=255)
                                                    tCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTGa                              >  1:5321460/1‑93 (MQ=255)
                                                    tCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTGa                              >  2:1601215/1‑93 (MQ=255)
                                                     cATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTGAt                             >  2:4984988/1‑93 (MQ=255)
                                                     cATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTGAt                             >  1:254154/1‑93 (MQ=255)
                                                     cATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTGAt                             >  1:4194516/1‑93 (MQ=255)
                                                      atatGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTGATa                            >  1:4700593/1‑93 (MQ=255)
                                                      atatGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTGATa                            >  1:2150971/1‑93 (MQ=255)
                                                      atatGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTGATa                            >  2:3198945/1‑93 (MQ=255)
                                                       tatGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTGATAc                           >  1:4873431/1‑93 (MQ=255)
                                                       tatGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTGATAc                           >  1:4383215/1‑93 (MQ=255)
                                                       tatGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTGATAc                           <  2:3071595/93‑1 (MQ=255)
                                                       tatGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTGATAc                           >  2:2893376/1‑93 (MQ=255)
                                                        atGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTGATACa                          >  1:4244129/1‑93 (MQ=255)
                                                        atGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTGATACa                          >  1:4109677/1‑93 (MQ=255)
                                                        atGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGGGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTAATACa                          >  1:5805102/1‑93 (MQ=255)
                                                         tGTTTTTCAAAAAGAACCTTACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTGATACAg                         >  2:6133246/1‑93 (MQ=255)
                                                         tGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTGATACAg                         >  1:2177989/1‑93 (MQ=255)
                                                         tGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTGATACAg                         >  1:6097607/1‑93 (MQ=255)
                                                          gTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTGATACAGa                        >  1:890034/1‑93 (MQ=255)
                                                           tttttCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTGATACAGaa                       >  2:3167747/1‑93 (MQ=255)
                                                            ttttCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTGATACAGAAt                      >  1:5936969/1‑93 (MQ=255)
                                                             tttCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTGATACAGAAtt                     >  1:785130/1‑93 (MQ=255)
                                                                 aaaaaGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTGATACAGAATTAACt                 <  1:2537252/93‑1 (MQ=255)
                                                                 aaaaaGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTGATACAGAATTAACt                 >  1:552355/1‑93 (MQ=255)
                                                                   aaaGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTGATACAGAATTAACTat               >  1:3552364/1‑93 (MQ=255)
                                                                    aaGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTGATACAGAATTAACTatc              >  2:1624962/1‑93 (MQ=255)
                                                                     aGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTGATACAGAATTAACTatca             >  2:1093825/1‑93 (MQ=255)
                                                                       aaCCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTGATACAGAATTAACTatcatc           <  1:1908582/93‑1 (MQ=255)
                                                                       aaCCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTGATACAGAATTAACTatcatc           <  1:1222404/93‑1 (MQ=255)
                                                                       aaCCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTGATACAGAATTAACTatcatc           >  1:693778/1‑93 (MQ=255)
                                                                          cTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTGATACAGAATTAACTATCATCGGc        >  1:4567313/1‑93 (MQ=255)
                                                                           tCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTGATACAGAATTAACTATCATCGGCg       >  2:51715/1‑93 (MQ=255)
                                                                           tCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTGATACAGAATTAACTATCATCGGCg       >  1:1987297/1‑93 (MQ=255)
                                                                              caacaaCTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTGATACAGAATTAACTATCATCGGCGAGt    >  1:1337787/1‑93 (MQ=255)
                                                                              caacaaCTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTGATACAGAATTAACTATCATCGGCGAGt    >  1:4605484/1‑93 (MQ=255)
                                                                               aacaacTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTGATACAGAATTAACTATCATCGGCGAGta   >  1:1702427/1‑93 (MQ=255)
                                                                                acaACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTGATACAGAATTAACTATCATCGGCGAGtat  >  1:5194026/1‑93 (MQ=255)
                                                                                acaACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTGATACAGAATTAACTATCATCGGCGAGtat  >  2:1217061/1‑93 (MQ=255)
                                                                                   |                                                                                         
ATACTGCTTCAGCTTTTTATTTTAAAAAATAAATTTGTTATTAAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAGCTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTGATACAGAATTAACTATCATCGGCGAGTAT  >  NC_000913/3358755‑3358927

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
CTGCTTCAGCTTTTTATTTTAAAAAATAAATTTGTTATTAAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAGCTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTGATACAGAATTAACTATCATCGGCGAGTATACCC  >  NC_000913/3358758‑3358931
                                                                                |                                                                                             
CTGCTTCAGCTTTTTATTTTAAAAAATAAATTTGTTATTAAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGC                                                                                  >  SRR4302533.5230923/1‑94 (MQ=60)
    TTCAGCTTTTTATTTTAAAAAATAAATTTGTTATTAAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCA                                                                              >  SRR4302533.2613586/1‑94 (MQ=60)
         CTTTTTATTTTAAAAAATAAATTTGTTATTAAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTC                                                                         >  SRR4302533.3090454/1‑94 (MQ=60)
          TTTTTATTTTAAAAAATAAATTTGTTATTAAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCT                                                                        <  SRR4302533.2276369/94‑1 (MQ=60)
            TTTATTTTAAAAAATAAATTTGTTATTAAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGT                                                                      >  SRR4302533.437771/1‑94 (MQ=60)
                 TTTAAAAAATAAATTTGTTATTAAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAG                                                                 >  SRR4302533.2809906/1‑94 (MQ=60)
                 TTTAAAAAATAAATTTGTTATTAAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAG                                                                 >  SRR4302533.2288909/1‑94 (MQ=60)
                 TTTAAAAAATAAATTTGTTATTAAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAG                                                                 >  SRR4302533.652551/1‑94 (MQ=60)
                    AAAAAATAAATTTGTTATTAAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCAT                                                              >  SRR4302533.3711355/1‑94 (MQ=60)
                     AAAAATAAATTTGTTATTAAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATT                                                             >  SRR4302533.4794740/1‑94 (MQ=60)
                       AAATAAATTTGTTATTAAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCA                                                           >  SRR4302533.27988/1‑94 (MQ=60)
                       AAATAAATTTGTTATTAAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCA                                                           >  SRR4302533.4045184/1‑94 (MQ=60)
                        AATAAATTTGTTATTAAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAG                                                          >  SRR4302533.1693399/1‑94 (MQ=60)
                         ATAAATTTGTTATTAAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGT                                                         >  SRR4302533.1002503/1‑94 (MQ=60)
                          TAAATTTGTTATTAAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTG                                                        >  SRR4302533.3438078/1‑94 (MQ=60)
                          TAAATTTGTTATTAAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTG                                                        >  SRR4302533.5616219/1‑94 (MQ=60)
                           AAATTTGTTATTAAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGC                                                       >  SRR4302533.4250081/1‑94 (MQ=60)
                           AAATTTGTTATTAAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGC                                                       >  SRR4302533.3872660/1‑94 (MQ=60)
                           AAATTTGTTATTAAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGC                                                       >  SRR4302533.4886605/1‑94 (MQ=60)
                             ATTTGTTATTAAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCA                                                     >  SRR4302533.4800452/1‑94 (MQ=60)
                              TTTGTTATTAAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCAT                                                    >  SRR4302533.4133332/1‑94 (MQ=60)
                              TTTGTTATTAAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCAT                                                    >  SRR4302533.1992207/1‑94 (MQ=60)
                                TGTTATTAAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGG                                                  >  SRR4302533.2632044/1‑94 (MQ=60)
                                CGTTATTAAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGG                                                  >  SRR4302533.1197790/1‑94 (MQ=60)
                                 GTTATTAAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGC                                                 >  SRR4302533.743052/1‑94 (MQ=60)
                                 GTTATTAAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGC                                                 >  SRR4302533.5185423/1‑94 (MQ=60)
                                 GTTATTAAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGC                                                 >  SRR4302533.4507786/1‑94 (MQ=60)
                                  TTATTAAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCA                                                >  SRR4302533.2556164/1‑94 (MQ=60)
                                  TTATTAAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCA                                                >  SRR4302533.2414620/1‑94 (MQ=60)
                                   TATTAAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAA                                               >  SRR4302533.6289738/1‑94 (MQ=60)
                                   TATTAAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAA                                               >  SRR4302533.5014479/1‑94 (MQ=60)
                                    ATTAAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAAC                                              >  SRR4302533.4308757/1‑94 (MQ=60)
                                    ATTAAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAAC                                              >  SRR4302533.2551120/1‑94 (MQ=60)
                                    ATTAAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAAC                                              >  SRR4302533.732926/1‑94 (MQ=60)
                                     TTAAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACA                                             >  SRR4302533.426433/1‑94 (MQ=60)
                                       AAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGA                                           >  SRR4302533.2554348/1‑94 (MQ=60)
                                       AAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACAGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGA                                           >  SRR4302533.3396068/1‑94 (MQ=60)
                                         GGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATT                                         >  SRR4302533.4967491/1‑94 (MQ=60)
                                         GGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATT                                         >  SRR4302533.1524367/1‑94 (MQ=60)
                                         GGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATT                                         >  SRR4302533.3529964/1‑94 (MQ=60)
                                         GGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATT                                         >  SRR4302533.2260797/1‑94 (MQ=60)
                                         GGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATT                                         >  SRR4302533.4772350/1‑94 (MQ=60)
                                           ATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCA                                       >  SRR4302533.5046712/1‑94 (MQ=60)
                                           ATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCA                                       <  SRR4302533.4592612/94‑1 (MQ=60)
                                           ATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCA                                       >  SRR4302533.4249299/1‑94 (MQ=60)
                                             ATGTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAAC                                     >  SRR4302533.4902101/1‑94 (MQ=60)
                                               GTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTG                                   >  SRR4302533.1130071/1‑94 (MQ=60)
                                               GTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTG                                   >  SRR4302533.655411/1‑94 (MQ=60)
                                               GTTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTG                                   >  SRR4302533.1658687/1‑94 (MQ=60)
                                                TTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTGA                                  >  SRR4302533.5353351/1‑94 (MQ=60)
                                                TTCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTGA                                  >  SRR4302533.744582/1‑94 (MQ=60)
                                                 TCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTGAT                                 >  SRR4302533.4219905/1‑94 (MQ=60)
                                                 TCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTGAT                                 >  SRR4302533.255712/1‑94 (MQ=60)
                                                 TCATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTGAT                                 <  SRR4302533.5572104/94‑1 (MQ=60)
                                                  CATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTGATA                                >  SRR4302533.2164217/1‑94 (MQ=60)
                                                  CATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTGATA                                >  SRR4302533.4729093/1‑94 (MQ=60)
                                                  CATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTGATA                                >  SRR4302533.1249313/1‑94 (MQ=60)
                                                   ATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTGATAC                               >  SRR4302533.4409677/1‑94 (MQ=60)
                                                   ATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTGATAC                               >  SRR4302533.4501780/1‑94 (MQ=60)
                                                   ATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTGATAC                               >  SRR4302533.4902960/1‑94 (MQ=60)
                                                   ATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTGATAC                               >  SRR4302533.4629982/1‑94 (MQ=60)
                                                   ATATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTGATAA                               >  SRR4302533.5200163/1‑94 (MQ=60)
                                                    TATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTGATACA                              >  SRR4302533.4269758/1‑94 (MQ=60)
                                                    TATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTGATACA                              >  SRR4302533.4134661/1‑94 (MQ=60)
                                                    TATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGGGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTAATACA                              >  SRR4302533.5840157/1‑94 (MQ=60)
                                                     ATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTGATACAG                             >  SRR4302533.6134435/1‑94 (MQ=60)
                                                     ATGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTGATACAG                             >  SRR4302533.2191416/1‑94 (MQ=60)
                                                      TGTTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTGATACAGA                            >  SRR4302533.895262/1‑94 (MQ=60)
                                                        TTTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTGATACAGAAT                          >  SRR4302533.5972866/1‑94 (MQ=60)
                                                         TTTTCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTGATACAGAATT                         >  SRR4302533.789749/1‑94 (MQ=60)
                                                            TCAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTGATACAGAATTAAC                      >  SRR4302533.2122115/1‑94 (MQ=60)
                                                             CAAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTGATACAGAATTAACT                     >  SRR4302533.555630/1‑94 (MQ=60)
                                                              AAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTGATACAGAATTAACTA                    <  SRR4302533.2552873/94‑1 (MQ=60)
                                                              AAAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTGATACAGAATTAACTA                    >  SRR4302533.5298335/1‑94 (MQ=60)
                                                               AAAAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTGATACAGAATTAACTAT                   >  SRR4302533.3574244/1‑94 (MQ=60)
                                                                 AAGAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTGATACAGAATTAACTATCA                 >  SRR4302533.5916819/1‑94 (MQ=60)
                                                                   GAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTGATACAGAATTAACTATCATC               >  SRR4302533.1898326/1‑94 (MQ=60)
                                                                   GAACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTGATACAGAATTAACTATCATC               >  SRR4302533.697877/1‑94 (MQ=60)
                                                                    AACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTGATACAGAATTAACTATCATCG              <  SRR4302533.5598971/94‑1 (MQ=60)
                                                                    AACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTGATACAGAATTAACTATCATCG              <  SRR4302533.1229734/94‑1 (MQ=60)
                                                                    AACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTGATACAGAATTAACTATCATCG              <  SRR4302533.1920225/94‑1 (MQ=60)
                                                                     ACCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTGATACAGAATTAACTATCATCGG             >  SRR4302533.2890810/1‑94 (MQ=60)
                                                                      CCTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTGATACAGAATTAACTATCATCGGC            >  SRR4302533.4595000/1‑94 (MQ=60)
                                                                       CTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTGATACAGAATTAACTATCATCGGCG           >  SRR4302533.1999453/1‑94 (MQ=60)
                                                                       CTCACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTGATACAGAATTAACTATCATCGGCG           >  SRR4302533.3866802/1‑94 (MQ=60)
                                                                          ACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTGATACAGAATTAACTATCATCGGCGAGT        >  SRR4302533.1345827/1‑94 (MQ=60)
                                                                          ACAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTGATACAGAATTAACTATCATCGGCGAGT        >  SRR4302533.4633384/1‑94 (MQ=60)
                                                                           CAACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTGATACAGAATTAACTATCATCGGCGAGTA       >  SRR4302533.1712742/1‑94 (MQ=60)
                                                                            AACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTGATACAGAATTAACTATCATCGGCGAGTAT      >  SRR4302533.5225355/1‑94 (MQ=60)
                                                                            AACAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTGATACAGAATTAACTATCATCGGCGAGTAT      >  SRR4302533.776863/1‑94 (MQ=60)
                                                                              CAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTGATACAGAATTAACTATCATCGGCGAGTATAC    <  SRR4302533.3978747/94‑1 (MQ=60)
                                                                              CAACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTGATACAGAATTAACTATCATCGGCGAGTATAC    >  SRR4302533.999177/1‑94 (MQ=60)
                                                                               AACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTGATACAGAATTAACTATCATCGGCGAGTATACC   >  SRR4302533.1974980/1‑94 (MQ=60)
                                                                               AACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTGATACAGAATTAACTATCATCGGCGAGTATACC   >  SRR4302533.5381058/1‑94 (MQ=60)
                                                                               AACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTGATACAGAATTAACTATCATCGGCGAGTATACC   >  SRR4302533.978101/1‑94 (MQ=60)
                                                                                ACTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTGATACAGAATTAACTATCATCGGCGAGTATACCC  >  SRR4302533.4790263/1‑94 (MQ=60)
                                                                                |                                                                                             
CTGCTTCAGCTTTTTATTTTAAAAAATAAATTTGTTATTAAGGATATGTTCATATGTTTTTCAAAAAGAACCTCACAACAGCTGCTATTTGTGCAGCACTTTCTGTTGCAGCATTCAGTGCCATGGCAACAGATTCAACTGATACAGAATTAACTATCATCGGCGAGTATACCC  >  NC_000913/3358758‑3358931

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑