Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 1548 369.5 20095359 96.9% 19472402 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,362,693 T→C L751P (CTC→CCC)  yhcD → putative outer membrane protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,362,6930TC99.6% 1830.7 / ‑4.6 556L751P (CTC→CCC) yhcDputative outer membrane protein
Reads supporting (aligned to +/- strand):  ref base T (0/2);  new base C (254/300);  total (254/302)
Fisher's exact test for biased strand distribution p-value = 5.03e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.84e-01

Only 100 of 565 total aligned reads displayed.

CCGACGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCTCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCACCTTACATTCCCAGAAGATGCACCA  >  NC_000913/3362603‑3362781
                                                                                          |                                                                                        
  gACGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAAt                                                                                      <  2:1326844/93‑1 (MQ=255)
     ggCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAAc                                                                                   >  2:6908061/1‑93 (MQ=255)
       cAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACAt                                                                                 <  2:9242858/93‑1 (MQ=255)
       cAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACAt                                                                                 <  2:2782443/93‑1 (MQ=255)
        aaaaaaCTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATc                                                                                <  2:4468550/93‑1 (MQ=255)
        aaaaaaCTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATc                                                                                <  1:517660/93‑1 (MQ=255)
         aaaaaCTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCCACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCa                                                                               >  2:1865551/1‑93 (MQ=255)
         aaaaaCTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCa                                                                               <  1:13328/93‑1 (MQ=255)
         aaaaaCTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCa                                                                               <  2:8109156/93‑1 (MQ=255)
           aaaCTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCaaa                                                                             <  1:1199792/93‑1 (MQ=255)
           aaaCTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCaaa                                                                             <  2:5302958/93‑1 (MQ=255)
            aaCTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAAc                                                                            <  2:1818214/93‑1 (MQ=255)
             aCTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAAcc                                                                           <  1:1392187/93‑1 (MQ=255)
             aCTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTAGTATTCCCCAATAACATCAAAcc                                                                           >  2:5497534/1‑93 (MQ=255)
              cTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCg                                                                          <  2:161780/93‑1 (MQ=255)
              cTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCg                                                                          <  1:7123836/93‑1 (MQ=255)
               tGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCgg                                                                         <  2:6106089/93‑1 (MQ=255)
                gCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGa                                                                        >  1:2353169/1‑93 (MQ=255)
                gCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGa                                                                        <  1:9545666/93‑1 (MQ=255)
                 cccAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGAc                                                                       <  2:397942/93‑1 (MQ=255)
                 cccAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGAc                                                                       <  1:9981972/93‑1 (MQ=255)
                  ccAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACa                                                                      >  1:7696060/1‑93 (MQ=255)
                   cAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACAt                                                                     >  1:8711735/1‑93 (MQ=255)
                    agagGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATg                                                                    <  2:9672045/93‑1 (MQ=255)
                    agagGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATg                                                                    >  1:2398136/1‑93 (MQ=255)
                    agagGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATg                                                                    >  1:8497075/1‑93 (MQ=255)
                     gagGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATgg                                                                   <  2:9879282/93‑1 (MQ=255)
                      agGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGt                                                                  <  2:3216854/93‑1 (MQ=255)
                       ggCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTg                                                                 >  1:6700741/1‑93 (MQ=255)
                        gCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGc                                                                <  2:9339307/93‑1 (MQ=255)
                        gCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGc                                                                <  2:6476585/93‑1 (MQ=255)
                           ttGCGATTGAAGATATTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAg                                                             >  1:2681640/1‑93 (MQ=255)
                           ttGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAg                                                             >  2:7629219/1‑93 (MQ=255)
                           ttGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAg                                                             >  1:455920/1‑93 (MQ=255)
                             gCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGat                                                           <  2:4999498/93‑1 (MQ=255)
                                atggAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGAtata                                                        <  1:677832/90‑1 (MQ=255)
                                aTTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGAtata                                                        >  2:2066682/1‑93 (MQ=255)
                                aTTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGAtata                                                        >  1:3233363/1‑93 (MQ=255)
                                 ttGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATaa                                                       <  2:2508358/93‑1 (MQ=255)
                                 ttGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCAAGATATaa                                                       >  1:7786756/1‑93 (MQ=255)
                                    aaGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAg                                                    >  2:3512442/1‑93 (MQ=255)
                                     aGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGa                                                   <  1:1927101/93‑1 (MQ=255)
                                     aGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGa                                                   <  1:360172/93‑1 (MQ=255)
                                     aGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGa                                                   >  1:6250319/1‑93 (MQ=255)
                                      gATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGAt                                                  >  2:2211851/1‑93 (MQ=255)
                                      gATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGAt                                                  >  2:5047864/1‑93 (MQ=255)
                                        tAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGa                                                <  2:575012/93‑1 (MQ=255)
                                        tAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGa                                                >  2:586601/1‑93 (MQ=255)
                                        tAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGAACATGGTGCTAGATATAAAAGATGa                                                <  2:668795/93‑1 (MQ=255)
                                         aGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGag                                               <  2:2595110/93‑1 (MQ=255)
                                          gTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGagc                                              <  1:3326712/93‑1 (MQ=255)
                                            gAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGagcag                                            >  2:3920013/1‑93 (MQ=255)
                                            gAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGagcag                                            >  1:8634823/1‑93 (MQ=255)
                                            gAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGagcag                                            >  2:7763212/1‑93 (MQ=255)
                                            gAAGGCAACTATCTGACAACATCAGTGGATGACGGTGGTGTATTCCCCAATAACATCAAACCGGACATGGGGCTAGATATAAAAGATGagcag                                            >  1:3857532/1‑93 (MQ=255)
                                             aaGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGagcagc                                           <  1:5270158/93‑1 (MQ=255)
                                             aaGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGagcagc                                           >  1:5348174/1‑93 (MQ=255)
                                               ggCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCaa                                         >  2:2354686/1‑93 (MQ=255)
                                               ggCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCaa                                         >  2:7106446/1‑93 (MQ=255)
                                                  aaCTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCa                                      <  2:9463409/93‑1 (MQ=255)
                                                  aaCTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCa                                      <  2:8541912/93‑1 (MQ=255)
                                                  aaCTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCa                                      <  2:8289000/93‑1 (MQ=255)
                                                  aaCTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCa                                      <  2:6245014/93‑1 (MQ=255)
                                                    ttATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATg                                    >  2:6162642/2‑93 (MQ=255)
                                                    cTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATg                                    >  1:8368588/1‑93 (MQ=255)
                                                     tATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGc                                   <  1:9693098/93‑1 (MQ=255)
                                                      aTCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGcc                                  <  2:8757665/93‑1 (MQ=255)
                                                      aTCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGcc                                  <  2:8499623/93‑1 (MQ=255)
                                                       tCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCg                                 >  1:6547365/1‑93 (MQ=255)
                                                         tGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTa                               <  1:3499872/93‑1 (MQ=255)
                                                            caacaTCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTc                            <  1:9142541/93‑1 (MQ=255)
                                                             aacaTCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCa                           >  1:8048836/1‑93 (MQ=255)
                                                              acaTCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCAc                          >  1:4086566/1‑93 (MQ=255)
                                                                 tCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCACCtt                       <  2:7410964/93‑1 (MQ=255)
                                                                 tCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCACCtt                       >  1:3779127/1‑93 (MQ=255)
                                                                  cAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCACCTTa                      <  1:3006658/93‑1 (MQ=255)
                                                                    gTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCACCTTACa                    <  1:9345516/93‑1 (MQ=255)
                                                                    gTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCACCTTACa                    >  2:4811495/1‑93 (MQ=255)
                                                                    gTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCACCTTACa                    <  1:1456675/93‑1 (MQ=255)
                                                                    gTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCACCTTACa                    >  2:332891/1‑93 (MQ=255)
                                                                      ggATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCACCTTACAtt                  <  2:7314900/93‑1 (MQ=255)
                                                                       gATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCACCTTACATTc                 <  1:5574042/93‑1 (MQ=255)
                                                                            cGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCACCTTACATTCCCaga            <  2:41473/93‑1 (MQ=255)
                                                                            cGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCACCTTACATTCCCaga            <  2:3688451/93‑1 (MQ=255)
                                                                             ggTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCACCTTACATTCCCagaa           >  2:310742/1‑93 (MQ=255)
                                                                             ggTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCACCTTACATTCCCagaa           >  1:595973/1‑93 (MQ=255)
                                                                             cgtgtTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCACCTTACATTCCCagaa           <  2:2960363/92‑1 (MQ=255)
                                                                              gtgtTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCACCTTACATTCCCagaag          >  1:628250/1‑93 (MQ=255)
                                                                              gtgtTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCACCTTACATTCCCagaag          >  2:9080066/1‑93 (MQ=255)
                                                                               tgttgtATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCACCTTACATTCCCagaaga         <  2:1213920/93‑1 (MQ=255)
                                                                               tgttgtATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCACCTTACATTCCCagaaga         >  1:572983/1‑93 (MQ=255)
                                                                               ggttgtATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCACCTTACATTCCCagaaga         <  2:463183/92‑1 (MQ=255)
                                                                                gttgtATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCACCTTACATTCCCAGAAGAt        >  2:7962671/1‑93 (MQ=255)
                                                                                 ttgtATTGCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCGGCAATCATGCCGTATTCACCTTACATTCCCAGAAGATg       <  1:1806430/93‑1 (MQ=255)
                                                                                 ttgtATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCACCTTACATTCCCAGAAGATg       <  1:1016902/93‑1 (MQ=255)
                                                                                 ttgtATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCACCTTACATTCCCAGAAGATg       <  1:4915507/93‑1 (MQ=255)
                                                                                    tATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCACCTTACATTCCCAGAAGATGCAc    <  1:7387019/93‑1 (MQ=255)
                                                                                    tATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCACCTTACATTCCCAGAAGATGCAc    >  1:2840147/1‑93 (MQ=255)
                                                                                    tATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCACCTTACATTCCCAGAAGATGCAc    <  1:2022524/93‑1 (MQ=255)
                                                                                      ttCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCACCTTACATTCCCAGAAGATGCACCa  >  1:894625/1‑93 (MQ=255)
                                                                                          |                                                                                        
CCGACGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCTCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCACCTTACATTCCCAGAAGATGCACCA  >  NC_000913/3362603‑3362781

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output Only 200 of 287 total aligned reads displayed.
TTTCCGACGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCTCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCACCTTACATTCCCAGAAGATGCACCAAAAGA  >  NC_000913/3362600‑3362786
                                                                                             |                                                                                             
TTACCGACGGCAAAAAACTGCCCAGACGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCC                                                                                               <  SRR4302540.7775391/94‑1 (MQ=60)
 TTCCGACGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCC                                                                                              <  SRR4302540.8169579/94‑1 (MQ=60)
 TTCCGACGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCC                                                                                              <  SRR4302540.3129691/94‑1 (MQ=60)
 TTCCGACGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCC                                                                                              >  SRR4302540.4181703/1‑94 (MQ=60)
  TCCGACGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCA                                                                                             <  SRR4302540.6467679/94‑1 (MQ=60)
   CCGACGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAA                                                                                            <  SRR4302540.6819144/94‑1 (MQ=60)
    CGACGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAAT                                                                                           >  SRR4302540.1127337/1‑94 (MQ=60)
    CGACGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAAT                                                                                           <  SRR4302540.7432116/94‑1 (MQ=60)
     GACGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATA                                                                                          <  SRR4302540.3020153/94‑1 (MQ=60)
     GACGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATA                                                                                          >  SRR4302540.2515840/1‑94 (MQ=60)
       CGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAAC                                                                                        <  SRR4302540.8718233/94‑1 (MQ=60)
        GGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACA                                                                                       <  SRR4302540.7036265/94‑1 (MQ=60)
          CAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATC                                                                                     >  SRR4302540.6068806/1‑94 (MQ=60)
           AAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCA                                                                                    <  SRR4302540.1982747/94‑1 (MQ=60)
           AAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCA                                                                                    <  SRR4302540.1457696/94‑1 (MQ=60)
           AAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCA                                                                                    <  SRR4302540.523212/94‑1 (MQ=60)
           AAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCA                                                                                    <  SRR4302540.6191158/94‑1 (MQ=60)
            AAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAA                                                                                   >  SRR4302540.3361832/1‑94 (MQ=60)
            AAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAA                                                                                   >  SRR4302540.661106/1‑94 (MQ=60)
            AAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAA                                                                                   <  SRR4302540.13479/94‑1 (MQ=60)
            AAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAA                                                                                   >  SRR4302540.1259804/1‑94 (MQ=60)
            AAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAA                                                                                   <  SRR4302540.9354368/94‑1 (MQ=60)
               AACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACC                                                                                <  SRR4302540.3939918/94‑1 (MQ=60)
               AACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGCGTTGTATTCCCCAATAACATCAAACC                                                                                >  SRR4302540.6073658/1‑94 (MQ=60)
                ACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCG                                                                               <  SRR4302540.1407098/94‑1 (MQ=60)
                ACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCG                                                                               <  SRR4302540.3653140/94‑1 (MQ=60)
                 CTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGG                                                                              >  SRR4302540.5854879/1‑94 (MQ=60)
                  TGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGA                                                                             <  SRR4302540.794117/94‑1 (MQ=60)
                  TGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGA                                                                             <  SRR4302540.858475/94‑1 (MQ=60)
                  TGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGA                                                                             >  SRR4302540.2378511/1‑94 (MQ=60)
                  TGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGA                                                                             <  SRR4302540.6550308/94‑1 (MQ=60)
                  TGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGA                                                                             >  SRR4302540.3638606/1‑94 (MQ=60)
                   GCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGAC                                                                            >  SRR4302540.4845814/1‑94 (MQ=60)
                    CCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACA                                                                           <  SRR4302540.10098360/94‑1 (MQ=60)
                    CCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACA                                                                           >  SRR4302540.7783767/1‑94 (MQ=60)
                    CCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACA                                                                           <  SRR4302540.8734267/94‑1 (MQ=60)
                    CCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACA                                                                           <  SRR4302540.8734266/94‑1 (MQ=60)
                     CCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACAT                                                                          >  SRR4302540.8812868/1‑94 (MQ=60)
                     CCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACAT                                                                          <  SRR4302540.8371155/94‑1 (MQ=60)
                      CAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATG                                                                         <  SRR4302540.117044/94‑1 (MQ=60)
                      CAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATG                                                                         >  SRR4302540.2423979/1‑94 (MQ=60)
                      CAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGCATGGTATTCCCCAATAACATCAAACCGGACATG                                                                         >  SRR4302540.4873575/1‑94 (MQ=60)
                       AGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGG                                                                        >  SRR4302540.7194079/1‑94 (MQ=60)
                        GAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGT                                                                       <  SRR4302540.5648640/94‑1 (MQ=60)
                        GAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGT                                                                       >  SRR4302540.4479321/1‑94 (MQ=60)
                         AGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTG                                                                      >  SRR4302540.6774711/1‑94 (MQ=60)
                          GGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGC                                                                     >  SRR4302540.5242436/1‑94 (MQ=60)
                           GCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCT                                                                    <  SRR4302540.5457317/94‑1 (MQ=60)
                            CGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTA                                                                   >  SRR4302540.5356082/1‑94 (MQ=60)
                            CGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTA                                                                   <  SRR4302540.5974683/94‑1 (MQ=60)
                            CGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTA                                                                   >  SRR4302540.1303171/1‑94 (MQ=60)
                            CGTTGCGATTGAAGATAGAGAAGGCAACTATCTGACCACATCAGTGGATGACGGTGTGGTAGTCCCCAATAACATCAAACCGagcatggcgata                                                                   >  SRR4302540.8508099/1‑82 (MQ=60)
                             GTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAG                                                                  >  SRR4302540.460790/1‑94 (MQ=60)
                              TTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGA                                                                 <  SRR4302540.6727437/94‑1 (MQ=60)
                               TGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGAT                                                                <  SRR4302540.4198396/94‑1 (MQ=60)
                               TGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGAT                                                                <  SRR4302540.9559937/94‑1 (MQ=60)
                                 CGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCCAACCGGACATGGTGCTAGGTAT                                                              >  SRR4302540.9865650/1‑94 (MQ=60)
                                 CGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATAT                                                              >  SRR4302540.763828/1‑94 (MQ=60)
                                 CGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATAT                                                              >  SRR4302540.9865649/1‑94 (MQ=60)
                                  GATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATA                                                             >  SRR4302540.3268524/1‑94 (MQ=60)
                                  GATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATA                                                             >  SRR4302540.8567867/1‑94 (MQ=60)
                                  GATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATA                                                             <  SRR4302540.257357/94‑1 (MQ=60)
                                  GATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATA                                                             >  SRR4302540.9635311/1‑94 (MQ=60)
                                   ATTGAAGATAGTGAAGGCAACTATCTGACAACCTCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACAGGACATGGTGCTAGATATAA                                                            <  SRR4302540.2416258/94‑1 (MQ=60)
                                   ATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAA                                                            >  SRR4302540.7877774/1‑94 (MQ=60)
                                   ATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAA                                                            <  SRR4302540.2416259/94‑1 (MQ=60)
                                   ATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCAAGATATAA                                                            >  SRR4302540.7877776/1‑94 (MQ=60)
                                    TTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAA                                                           <  SRR4302540.2380655/94‑1 (MQ=60)
                                     TGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGCCATGGTGCTAGATATAAAA                                                          >  SRR4302540.2867417/1‑94 (MQ=60)
                                     TGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAA                                                          <  SRR4302540.8672744/94‑1 (MQ=60)
                                     TGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAA                                                          >  SRR4302540.2867713/1‑94 (MQ=60)
                                       AAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGCCATGGTGTTAGATATAcaaca                                                        >  SRR4302540.1366913/1‑89 (MQ=60)
                                       AAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGA                                                        >  SRR4302540.6319868/1‑94 (MQ=60)
                                       AAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGA                                                        <  SRR4302540.9826253/94‑1 (MQ=60)
                                       AAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGA                                                        >  SRR4302540.9674508/1‑94 (MQ=60)
                                        AGATAGTGAAGGCACCTATGTGAAAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGAT                                                       <  SRR4302540.6651029/94‑1 (MQ=60)
                                        AGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGAT                                                       <  SRR4302540.9186982/94‑1 (MQ=60)
                                        AGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGAT                                                       <  SRR4302540.5474001/94‑1 (MQ=60)
                                        AGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGAT                                                       <  SRR4302540.6651027/94‑1 (MQ=60)
                                         GATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATG                                                      <  SRR4302540.3381986/94‑1 (MQ=60)
                                         GATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATG                                                      <  SRR4302540.9346268/94‑1 (MQ=60)
                                         GATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATG                                                      >  SRR4302540.7909563/1‑94 (MQ=60)
                                          ATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGA                                                     >  SRR4302540.6597882/1‑94 (MQ=60)
                                            AGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGC                                                   <  SRR4302540.2127794/94‑1 (MQ=60)
                                            AGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGC                                                   >  SRR4302540.187285/1‑94 (MQ=60)
                                             GTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCA                                                  <  SRR4302540.3363220/94‑1 (MQ=60)
                                             GTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCA                                                  <  SRR4302540.3363219/94‑1 (MQ=60)
                                              TGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAG                                                 <  SRR4302540.1399240/94‑1 (MQ=60)
                                              TGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGGTGTATTCCCCAATAACATCAAACCGGACATGGGGCTAGATATAAAAGATGAGCAG                                                 >  SRR4302540.3899471/1‑94 (MQ=60)
                                                AAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCA                                               >  SRR4302540.3973460/1‑94 (MQ=60)
                                                AAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCA                                               <  SRR4302540.5327686/94‑1 (MQ=60)
                                                  GGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAAT                                             <  SRR4302540.2001052/94‑1 (MQ=60)
                                                  GGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAAT                                             <  SRR4302540.3888562/94‑1 (MQ=60)
                                                  GGCAACGATCTTACAACATCAGTGGATGACGGTGTTGGATGCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAAT                                             <  SRR4302540.2001053/94‑1 (MQ=60)
                                                    CAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCA                                           >  SRR4302540.2997232/1‑94 (MQ=60)
                                                    CAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCA                                           >  SRR4302540.1830201/1‑94 (MQ=60)
                                                     AACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCAT                                          <  SRR4302540.336681/94‑1 (MQ=60)
                                                     AACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCAT                                          <  SRR4302540.1667008/94‑1 (MQ=60)
                                                     AACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCAT                                          >  SRR4302540.5398608/1‑94 (MQ=60)
                                                     AACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCAT                                          <  SRR4302540.4102561/94‑1 (MQ=60)
                                                     AACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCAT                                          >  SRR4302540.7056885/1‑94 (MQ=60)
                                                      ACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATG                                         <  SRR4302540.3167159/94‑1 (MQ=60)
                                                      ACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATG                                         <  SRR4302540.5148748/94‑1 (MQ=60)
                                                      ACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATG                                         >  SRR4302540.5365209/1‑94 (MQ=60)
                                                      ACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATG                                         <  SRR4302540.493824/94‑1 (MQ=60)
                                                      ACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATG                                         >  SRR4302540.361343/1‑94 (MQ=60)
                                                      ACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATG                                         >  SRR4302540.8465707/1‑94 (MQ=60)
                                                      ACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATC                                         >  SRR4302540.8462498/1‑94 (MQ=60)
                                                       CTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGATATGGTGCTAGATATAAAAGATGAGCAGCAATCATGC                                        >  SRR4302540.9781567/1‑94 (MQ=60)
                                                        TATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCC                                       >  SRR4302540.1418676/1‑94 (MQ=60)
                                                        TATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCC                                       <  SRR4302540.9807100/94‑1 (MQ=60)
                                                        TATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCC                                       <  SRR4302540.8179443/94‑1 (MQ=60)
                                                         ATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCG                                      >  SRR4302540.7218080/1‑94 (MQ=60)
                                                          TCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGT                                     <  SRR4302540.6620637/94‑1 (MQ=60)
                                                           CTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTA                                    >  SRR4302540.1901737/1‑94 (MQ=60)
                                                           CTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTA                                    >  SRR4302540.965564/1‑94 (MQ=60)
                                                            TGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTAT                                   <  SRR4302540.5589443/94‑1 (MQ=60)
                                                            TGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTAT                                   <  SRR4302540.901153/94‑1 (MQ=60)
                                                             GACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATT                                  >  SRR4302540.6853190/1‑94 (MQ=60)
                                                             GACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATT                                  <  SRR4302540.4075492/94‑1 (MQ=60)
                                                             GACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATT                                  <  SRR4302540.876255/94‑1 (MQ=60)
                                                               CAACATCAGTGTATGACGGGTTGGTATTCCCCAATAACAGCAAACCGGACATGGTGCTAGATATAAAAGAGGAGCAGCATTCATGCCGTATTCA                                <  SRR4302540.9252370/94‑1 (MQ=60)
                                                               CAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCA                                >  SRR4302540.8142330/1‑94 (MQ=60)
                                                                AACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCAC                               <  SRR4302540.564734/94‑1 (MQ=60)
                                                                AACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCAC                               >  SRR4302540.7692159/1‑94 (MQ=60)
                                                                AACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCAC                               >  SRR4302540.2070514/1‑94 (MQ=60)
                                                                  CATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCACCT                             <  SRR4302540.380973/94‑1 (MQ=60)
                                                                  CATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCACCT                             <  SRR4302540.3087756/94‑1 (MQ=60)
                                                                   ATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCACCTT                            >  SRR4302540.6321526/1‑94 (MQ=60)
                                                                   ATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCACCTT                            >  SRR4302540.2967332/1‑94 (MQ=60)
                                                                   ATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCACCTT                            >  SRR4302540.3820351/1‑94 (MQ=60)
                                                                   ATCAGTGGATGACGGTGTTGCATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCACCTT                            >  SRR4302540.3513266/1‑94 (MQ=60)
                                                                   ATCAGTGGATGACGGCGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCACCTT                            >  SRR4302540.1338641/1‑94 (MQ=60)
                                                                    TCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCACCTTA                           <  SRR4302540.388226/94‑1 (MQ=60)
                                                                     CAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCACCTTAC                          <  SRR4302540.3039756/94‑1 (MQ=60)
                                                                      AGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCACCTTACA                         >  SRR4302540.9084008/1‑94 (MQ=60)
                                                                      AGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCACCTTACA                         >  SRR4302540.9593778/1‑94 (MQ=60)
                                                                      AGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCACCTTACA                         >  SRR4302540.3333430/1‑94 (MQ=60)
                                                                       GTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCACCTTACAT                        <  SRR4302540.5128484/94‑1 (MQ=60)
                                                                       GTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCACCTTACAT                        >  SRR4302540.5554814/1‑94 (MQ=60)
                                                                       GTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCACCTTACAT                        <  SRR4302540.3750231/94‑1 (MQ=60)
                                                                       GTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCACCTTACAT                        <  SRR4302540.1472519/94‑1 (MQ=60)
                                                                       GTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCACCTTACAT                        <  SRR4302540.8103306/94‑1 (MQ=60)
                                                                       GTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCACCTTACAT                        <  SRR4302540.9456851/94‑1 (MQ=60)
                                                                        TGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCACCTTACATT                       >  SRR4302540.271596/1‑94 (MQ=60)
                                                                        TGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCACCTTACATT                       <  SRR4302540.849791/94‑1 (MQ=60)
                                                                         GGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCACCTTACATTC                      <  SRR4302540.3078287/94‑1 (MQ=60)
                                                                         GGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCACCTTACATTC                      >  SRR4302540.3672300/1‑94 (MQ=60)
                                                                          GATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCACCTTACATTCC                     <  SRR4302540.5635413/94‑1 (MQ=60)
                                                                          GATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCACCTTACATTCC                     >  SRR4302540.7799653/1‑94 (MQ=60)
                                                                           ATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCACCTTACATTCCC                    >  SRR4302540.688388/1‑94 (MQ=60)
                                                                           ATGACGGTGTTGTATTCCCCAATAACATCAAACCGGAAATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCACCTTACATTCCC                    >  SRR4302540.1736786/1‑94 (MQ=60)
                                                                            TGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCACCTTACATTCCCA                   <  SRR4302540.8800246/94‑1 (MQ=60)
                                                                            TGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCACCTTACATTCCCA                   <  SRR4302540.5245041/94‑1 (MQ=60)
                                                                            TGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCACCTTACATTCCCA                   <  SRR4302540.26222/94‑1 (MQ=60)
                                                                            TGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCACCTTACATTCCCA                   >  SRR4302540.7384435/1‑94 (MQ=60)
                                                                            TGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCACCTTACATTCCCA                   <  SRR4302540.1512157/94‑1 (MQ=60)
                                                                            TGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCACCTTACATTCCCA                   <  SRR4302540.6337783/94‑1 (MQ=60)
                                                                             GACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCACCTTACATTCCCAG                  >  SRR4302540.8817364/1‑94 (MQ=60)
                                                                              ACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCACCTTACATTCCCAGA                 <  SRR4302540.5796313/94‑1 (MQ=60)
                                                                               CGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCACCTTACATTCCCAGAA                >  SRR4302540.2813178/1‑94 (MQ=60)
                                                                               CGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCACCTTACATTCCCAGAA                >  SRR4302540.602371/1‑94 (MQ=60)
                                                                               CGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCACCTTACATTCCCAGAA                >  SRR4302540.7501095/1‑94 (MQ=60)
                                                                               CGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCACCTTACATTCCCAGAA                >  SRR4302540.2261552/1‑94 (MQ=60)
                                                                                GGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCACCTTACATTCCCAGAAG               >  SRR4302540.7796664/1‑94 (MQ=60)
                                                                                GGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCACCTTACATTCCCAGAAG               <  SRR4302540.9014769/94‑1 (MQ=60)
                                                                                GGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCACCTTACATTCCCAGAAG               >  SRR4302540.634938/1‑94 (MQ=60)
                                                                                 GTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCACCTTACATTCCCAGAAGA              >  SRR4302540.579203/1‑94 (MQ=60)
                                                                                  TGTTGTATTCCCCACTACCATCAAACCGGCCATGGAGCTCGATTTACAAGATGAGCAGCAATCATGCCGTATTCACCTTACATTCCCAGAAGAT             <  SRR4302540.9045967/94‑1 (MQ=60)
                                                                                  TGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCACCTTACATTCCCAGAAGAT             <  SRR4302540.7233900/94‑1 (MQ=60)
                                                                                  TGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCACCTTACATTCCCAGAAGAT             >  SRR4302540.6333113/1‑94 (MQ=60)
                                                                                  TGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCACCTTACATTCCCAGAAGAT             >  SRR4302540.1438728/1‑94 (MQ=60)
                                                                                  TGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCACCTTACATTCCCAGAAGAT             >  SRR4302540.1958058/1‑94 (MQ=60)
                                                                                  TGTTGTATTCCCCAATAACACCAAGCCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCACCTTACATTCCCAGAAGAT             <  SRR4302540.8735684/94‑1 (MQ=60)
                                                                                   GTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCACCTTACATTCCCAGAAGATG            <  SRR4302540.9416572/94‑1 (MQ=60)
                                                                                   GTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCACCTTACATTCCCAGAAGATG            <  SRR4302540.6845686/94‑1 (MQ=60)
                                                                                    TTGTATTGCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCGGCAATCATGCCGTATTCACCTTACATTCCCAGAAGATGC           <  SRR4302540.1826110/94‑1 (MQ=60)
                                                                                    TTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCACCTTACATTCCCAGAAGATGC           <  SRR4302540.1027207/94‑1 (MQ=60)
                                                                                    TTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCACCTTACATTCCCAGAAGATGC           <  SRR4302540.1221315/94‑1 (MQ=60)
                                                                                    TTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCACCTTACATTCCCAGAAGATGC           <  SRR4302540.4968440/94‑1 (MQ=60)
                                                                                     TGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCACCTTACATTCCCAGAAGATGCA          <  SRR4302540.5028311/94‑1 (MQ=60)
                                                                                     TGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCACCTTACATTCCCAGAAGATGCA          >  SRR4302540.3588262/1‑94 (MQ=60)
                                                                                     TGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCACCTTACATTCCCAGAAGATGCA          <  SRR4302540.1161310/94‑1 (MQ=60)
                                                                                      GTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCACCTTACATTCCCAGAAGATGCAC         >  SRR4302540.5392540/1‑94 (MQ=60)
                                                                                      GTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCACCTTACATTCCCAGAAGATGCAC         <  SRR4302540.3630656/94‑1 (MQ=60)
                                                                                      GTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCACCTTACATTCCCAGAAGATGCAC         >  SRR4302540.2870876/1‑94 (MQ=60)
                                                                                       TATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCACCTTACATTCCCAGAAGATGCACC        >  SRR4302540.5883098/1‑94 (MQ=60)
                                                                                       TATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCACCTTACATTCCCAGAAGATGCACC        <  SRR4302540.5156050/94‑1 (MQ=60)
                                                                                       TATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCACCTTACATTCCCAGAAGATGCACC        <  SRR4302540.2044384/94‑1 (MQ=60)
                                                                                        ATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCACCTTACATTCCCAGAAGATGCACCA       <  SRR4302540.9444365/94‑1 (MQ=60)
                                                                                        ATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCACCTTACATTCCCAGAAGATGCACCA       >  SRR4302540.4393169/1‑94 (MQ=60)
                                                                                          TCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCACCTTACATTCGCAGAAGATGCACCAAA     >  SRR4302540.191778/1‑94 (MQ=60)
                                                                                          TCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCACCTTACATTCCCAGAAGATGCACCAAA     >  SRR4302540.2084859/1‑94 (MQ=60)
                                                                                           CCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCACCTTACATTCCCAGAAGATGCACCAAAA    >  SRR4302540.7512875/1‑94 (MQ=60)
                                                                                            CCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCACCTTACATTCCCAGAAGATGCACCAAAAG   <  SRR4302540.1323813/94‑1 (MQ=60)
                                                                                            CCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCACCTTACATTCCCAGAAGATGCACCAAAAG   <  SRR4302540.4496132/94‑1 (MQ=60)
                                                                                            CCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCACCTTACATTCCCAGAAGATGCACCAAAAG   <  SRR4302540.2705257/94‑1 (MQ=60)
                                                                                            CCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCACCTTACATTCCCAGAAGATGCACCAAAAG   <  SRR4302540.4660920/94‑1 (MQ=60)
                                                                                            CCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCACCTTACATTCCCAGAAGATGCACCAAAAG   <  SRR4302540.8729387/94‑1 (MQ=60)
                                                                                             CCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCACCTTACATTCCCAGAAGATGCACCAAAAGA  >  SRR4302540.9570095/1‑94 (MQ=60)
                                                                                             |                                                                                             
TTTCCGACGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCTCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCACCTTACATTCCCAGAAGATGCACCAAAAGA  >  NC_000913/3362600‑3362786

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑