Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1624	250.6	12620048	98.0%	12367647	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,362,693	T→C	L751P (CTC→CCC)	yhcD →	putative outer membrane protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,362,693	0	T	C	100.0%	1015.1 / NA	308	L751P (CTC→CCC)	yhcD	putative outer membrane protein
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (163/145); total (163/145)

Only 100 of 312 total aligned reads displayed.

CGACGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCTCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCACCTTACATTCCCAGAAGATGCACCA  >  NC_000913/3362604‑3362781

cGACGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCaa                                                                                       <  2:6235077/93‑1 (MQ=255)

cGACGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCaa                                                                                       <  1:955251/93‑1 (MQ=255)

 gACGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAAt                                                                                      >  1:4956447/1‑93 (MQ=255)

  aCGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATa                                                                                     >  2:4150756/1‑93 (MQ=255)

  aCGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATa                                                                                     <  1:2165073/93‑1 (MQ=255)

   cGGCAAAAAACTGCCCAGAGGCGGTGCGGTTTAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGGGTTGTATTTCCCAATaa                                                                                    >  2:1427993/1‑93 (MQ=255)

     gCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACa                                                                                  <  1:1020170/93‑1 (MQ=255)

       aaaaaaCTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATc                                                                                <  1:5939656/93‑1 (MQ=255)

        aaaaaCTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCa                                                                               <  2:1853413/93‑1 (MQ=255)

        aaaaaCTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCa                                                                               >  1:3920030/1‑93 (MQ=255)

           aaCTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGATGGGGTTGTATTTCCCAATAACATCAAAc                                                                            >  2:2169876/1‑93 (MQ=255)

           aaCTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAAc                                                                            <  2:3284060/93‑1 (MQ=255)

             cTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCg                                                                          >  1:5568581/1‑93 (MQ=255)

              tGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAGCATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCgg                                                                         <  2:356726/93‑1 (MQ=255)

              tGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCgg                                                                         >  2:3116730/1‑93 (MQ=255)

              tGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCgg                                                                         >  1:3987573/1‑93 (MQ=255)

              tGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCgg                                                                         <  1:4053980/93‑1 (MQ=255)

               gCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGa                                                                        >  2:3793339/1‑93 (MQ=255)

               gCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGa                                                                        >  1:206409/1‑93 (MQ=255)

               gCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGa                                                                        >  2:792429/1‑93 (MQ=255)

                 ccAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACa                                                                      <  2:4693088/93‑1 (MQ=255)

                 ccAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACa                                                                      >  1:5736013/1‑93 (MQ=255)

                 ccAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACa                                                                      >  1:5304328/1‑93 (MQ=255)

                  cAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACAt                                                                     >  2:724097/1‑93 (MQ=255)

                   agagGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATg                                                                    <  2:286127/93‑1 (MQ=255)

                    gagGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATgg                                                                   <  1:6030451/93‑1 (MQ=255)

                    gagGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATgg                                                                   >  1:1620687/1‑93 (MQ=255)

                      ggCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTg                                                                 <  1:4175160/93‑1 (MQ=255)

                       gCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGc                                                                <  2:5706836/93‑1 (MQ=255)

                         gTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTa                                                              <  1:1205256/93‑1 (MQ=255)

                          ttGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAg                                                             >  1:5709491/1‑93 (MQ=255)

                           tGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGa                                                            >  1:5176819/1‑93 (MQ=255)

                             cGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGata                                                          <  2:2958585/93‑1 (MQ=255)

                             cGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGata                                                          <  1:4469425/93‑1 (MQ=255)

                             cGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGata                                                          <  1:6153988/93‑1 (MQ=255)

                             cGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGata                                                          <  2:5113715/93‑1 (MQ=255)

                              gATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGatat                                                         >  1:729612/1‑93 (MQ=255)

                                ttGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATaa                                                       >  2:4915977/1‑93 (MQ=255)

                                ttGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATaa                                                       >  2:3423978/1‑93 (MQ=255)

                                 tGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATaaa                                                      <  1:4129402/93‑1 (MQ=255)

                                 tGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATaaa                                                      >  2:3520222/1‑93 (MQ=255)

                                 tGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGCATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATaaa                                                      <  1:3372722/93‑1 (MQ=255)

                                 tGAAGATAGGGAAGGCAACTATCTGACAACATCAGAGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATaaa                                                      >  2:4004858/1‑93 (MQ=255)

                                  gAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATaaaa                                                     >  1:2126279/1‑93 (MQ=255)

                                   aaGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAg                                                    <  2:5264663/93‑1 (MQ=255)

                                   aaGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAg                                                    <  1:6306113/93‑1 (MQ=255)

                                     gATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGAt                                                  >  2:3733319/1‑93 (MQ=255)

                                     gATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGAt                                                  <  2:4540753/93‑1 (MQ=255)

                                     gATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGAt                                                  >  1:133655/1‑93 (MQ=255)

                                     gATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGAt                                                  >  2:2340683/1‑93 (MQ=255)

                                      aTAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATg                                                 <  2:1983981/93‑1 (MQ=255)

                                       tAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGa                                                >  1:3844959/1‑93 (MQ=255)

                                        aGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGag                                               >  1:170299/1‑93 (MQ=255)

                                         gTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGagc                                              <  1:923567/93‑1 (MQ=255)

                                          tGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGagca                                             <  1:408111/93‑1 (MQ=255)

                                          tGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGagca                                             <  2:2650701/93‑1 (MQ=255)

                                          tGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGagca                                             <  1:3207962/93‑1 (MQ=255)

                                           gAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGagcag                                            >  1:1806303/1‑93 (MQ=255)

                                            aacgCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGagcagc                                           <  2:339572/90‑1 (MQ=255)

                                            aaGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGagcagc                                           >  1:2446815/1‑93 (MQ=255)

                                              ggCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCaa                                         >  2:1559329/1‑93 (MQ=255)

                                                cAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATc                                       >  1:3639258/1‑93 (MQ=255)

                                                cAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATc                                       >  2:6022264/1‑93 (MQ=255)

                                                 aaCTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCa                                      >  1:5290809/1‑93 (MQ=255)

                                                  aCTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCAt                                     >  1:3036132/1‑93 (MQ=255)

                                                  aCTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCAt                                     <  2:2094039/93‑1 (MQ=255)

                                                  aCTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCAt                                     <  1:5815811/93‑1 (MQ=255)

                                                  aCTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCAt                                     >  2:245259/1‑93 (MQ=255)

                                                   cTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATg                                    <  2:2750436/93‑1 (MQ=255)

                                                      tCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCg                                 >  1:2623398/1‑93 (MQ=255)

                                                       cTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGt                                >  1:5075193/1‑93 (MQ=255)

                                                          acaacaTCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTAtt                             <  2:5610107/93‑1 (MQ=255)

                                                           caacaTCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTc                            <  1:5908955/93‑1 (MQ=255)

                                                           caacaTCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTc                            <  1:1466628/93‑1 (MQ=255)

                                                            aacaTCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCa                           >  2:1874597/1‑93 (MQ=255)

                                                             acaTCAGGGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGAGATAAAAGATGAGCAGCAATCATGCCGTATTCAc                          >  1:1975664/1‑93 (MQ=255)

                                                              caTCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCAcc                         >  2:6187560/1‑93 (MQ=255)

                                                              caTCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCAcc                         >  2:104480/1‑93 (MQ=255)

                                                              caTCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCAcc                         >  1:4621895/1‑93 (MQ=255)

                                                              caTCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCAcc                         <  1:4263224/93‑1 (MQ=255)

                                                               aTCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCACCt                        >  2:423502/1‑93 (MQ=255)

                                                                tCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCACCtt                       >  2:3065658/1‑93 (MQ=255)

                                                                tCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCACCtt                       >  2:1189653/1‑93 (MQ=255)

                                                                  aGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCACCTTAc                     >  1:1526099/1‑93 (MQ=255)

                                                                  aGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCACCTTAc                     <  2:5486017/93‑1 (MQ=255)

                                                                   gTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCACCTTACa                    <  1:3115961/93‑1 (MQ=255)

                                                                   gTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCACCTTACa                    <  1:3760999/93‑1 (MQ=255)

                                                                     ggATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCACCTTACAtt                  >  2:5737687/1‑93 (MQ=255)

                                                                     ggATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCACCTTACAtt                  >  2:586908/1‑93 (MQ=255)

                                                                        tGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCACCTTACATTccc               <  1:5362565/93‑1 (MQ=255)

                                                                         gACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCACCTTACATTCCCa              <  1:340402/93‑1 (MQ=255)

                                                                         gACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCACCTTACATTCCCa              <  2:628505/93‑1 (MQ=255)

                                                                          aCGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCACCTTACATTCCCag             >  1:2707821/1‑93 (MQ=255)

                                                                            ggTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCACCTTACATTCCCagaa           <  2:1318943/93‑1 (MQ=255)

                                                                             gtgtTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCACCTTACATTCCCagaag          <  1:2826639/93‑1 (MQ=255)

                                                                               gttgtATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCACCTTACATTCCCAGAAGAt        >  2:3951847/1‑93 (MQ=255)

                                                                                ttgtATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCACCTTACATTCCCAGAAGATg       >  1:2339322/1‑93 (MQ=255)

                                                                                   tATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCACCTTACATTCCCAGAAGATGCAc    >  1:8887/1‑93 (MQ=255)

                                                                                    aTTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCACCTTACATTCCCAGAAGATGCAcc   >  1:3584883/1‑93 (MQ=255)

                                                                                     ttCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCACCTTACATTCCCAGAAGATGCACCa  <  2:5346462/93‑1 (MQ=255)

CGACGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCTCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCACCTTACATTCCCAGAAGATGCACCA  >  NC_000913/3362604‑3362781

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 24 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CGACGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCTCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCACCTTACATTCCCAGAAGATGCACCAAAAG  >  NC_000913/3362604‑3362785

CGACGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGCCGGTGTTGTATTCCCCAAT                                                                                          >  SRR4302533.1763558/1‑94 (MQ=60)

CGACGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAAT                                                                                          >  SRR4302533.3422737/1‑94 (MQ=60)

CGACGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAAT                                                                                          <  SRR4302533.960859/94‑1 (MQ=60)

CGACGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAAT                                                                                          >  SRR4302533.3901541/1‑94 (MQ=60)

CGACGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAAT                                                                                          >  SRR4302533.4986470/1‑94 (MQ=60)

  ACGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAA                                                                                        >  SRR4302533.3818086/1‑94 (MQ=60)

  ACGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAA                                                                                        >  SRR4302533.4232607/1‑94 (MQ=60)

  ACGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAA                                                                                        <  SRR4302533.2178390/94‑1 (MQ=60)

   CGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGGTGTATTCCCCAATAAC                                                                                       >  SRR4302533.4498371/1‑94 (MQ=60)

    GGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACA                                                                                      <  SRR4302533.3670216/94‑1 (MQ=60)

     GCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACAT                                                                                     <  SRR4302533.1026164/94‑1 (MQ=60)

     GCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACAT                                                                                     >  SRR4302533.2395300/1‑94 (MQ=60)

      CAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATC                                                                                    <  SRR4302533.3657106/94‑1 (MQ=60)

       AAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCA                                                                                   <  SRR4302533.5975569/94‑1 (MQ=60)

       AAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCA                                                                                   >  SRR4302533.3943969/1‑94 (MQ=60)

       AAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCA                                                                                   <  SRR4302533.5769586/94‑1 (MQ=60)

       AAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCA                                                                                   >  SRR4302533.5349927/1‑94 (MQ=60)

        AAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAA                                                                                  <  SRR4302533.2867502/94‑1 (MQ=60)

         AAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAA                                                                                 >  SRR4302533.593440/1‑94 (MQ=60)

         AAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAA                                                                                 <  SRR4302533.4166410/94‑1 (MQ=60)

          AAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAAC                                                                                >  SRR4302533.1483750/1‑94 (MQ=60)

           AACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACC                                                                               <  SRR4302533.2611732/94‑1 (MQ=60)

           AACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACC                                                                               >  SRR4302533.1706764/1‑94 (MQ=60)

           AACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACC                                                                               <  SRR4302533.5691094/94‑1 (MQ=60)

            ACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCG                                                                              >  SRR4302533.5602241/1‑94 (MQ=60)

            ACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCG                                                                              <  SRR4302533.1407672/94‑1 (MQ=60)

            ACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCG                                                                              >  SRR4302533.684441/1‑94 (MQ=60)

            ACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCG                                                                              <  SRR4302533.3850086/94‑1 (MQ=60)

             CTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGG                                                                             >  SRR4302533.4011864/1‑94 (MQ=60)

             CTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGG                                                                             <  SRR4302533.5805391/94‑1 (MQ=60)

              TGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGA                                                                            >  SRR4302533.207718/1‑94 (MQ=60)

              TGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGA                                                                            <  SRR4302533.4078666/94‑1 (MQ=60)

              TGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGA                                                                            <  SRR4302533.4130815/94‑1 (MQ=60)

              TGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGA                                                                            >  SRR4302533.1212057/1‑94 (MQ=60)

              TGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGA                                                                            >  SRR4302533.3127136/1‑94 (MQ=60)

              TGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGA                                                                            <  SRR4302533.5605370/94‑1 (MQ=60)

              TGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGA                                                                            >  SRR4302533.3223334/1‑94 (MQ=60)

               GCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGAA                                                                           >  SRR4302533.2009893/1‑94 (MQ=60)

                CCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACA                                                                          >  SRR4302533.5336113/1‑94 (MQ=60)

                CCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACA                                                                          >  SRR4302533.5770636/1‑94 (MQ=60)

                CCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACA                                                                          <  SRR4302533.204369/94‑1 (MQ=60)

                 CCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACAT                                                                         >  SRR4302533.5411266/1‑94 (MQ=60)

                  CAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATG                                                                        >  SRR4302533.1646751/1‑94 (MQ=60)

                  CAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATG                                                                        >  SRR4302533.4098355/1‑94 (MQ=60)

                   AGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGG                                                                       <  SRR4302533.933714/94‑1 (MQ=60)

                   AGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGG                                                                       <  SRR4302533.2041872/94‑1 (MQ=60)

                   AGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGG                                                                       >  SRR4302533.1630506/1‑94 (MQ=60)

                    GAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGT                                                                      <  SRR4302533.6066998/94‑1 (MQ=60)

                     AGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTG                                                                     <  SRR4302533.1552619/94‑1 (MQ=60)

                     AGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTG                                                                     <  SRR4302533.6093328/94‑1 (MQ=60)

                      GGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGC                                                                    <  SRR4302533.3049566/94‑1 (MQ=60)

                      GGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGC                                                                    <  SRR4302533.4200460/94‑1 (MQ=60)

                      GGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGC                                                                    >  SRR4302533.1926867/1‑94 (MQ=60)

                       GCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCT                                                                   >  SRR4302533.2936015/1‑94 (MQ=60)

                        CGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTA                                                                  >  SRR4302533.5039932/1‑94 (MQ=60)

                         GTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAG                                                                 >  SRR4302533.4015883/1‑94 (MQ=60)

                         GTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAG                                                                 <  SRR4302533.1212499/94‑1 (MQ=60)

                         GTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAG                                                                 >  SRR4302533.5743979/1‑94 (MQ=60)

                         GTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAG                                                                 >  SRR4302533.351759/1‑94 (MQ=60)

                         GTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGAGCTAG                                                                 >  SRR4302533.279584/1‑94 (MQ=60)

                          TTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGA                                                                <  SRR4302533.2499420/94‑1 (MQ=60)

                          TTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGA                                                                >  SRR4302533.5208084/1‑94 (MQ=60)

                           TGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGAT                                                               <  SRR4302533.85499/94‑1 (MQ=60)

                           TGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGAT                                                               <  SRR4302533.3658876/94‑1 (MQ=60)

                            GCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATA                                                              <  SRR4302533.1104192/94‑1 (MQ=60)

                            GCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATA                                                              <  SRR4302533.3225135/94‑1 (MQ=60)

                             CGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATAT                                                             >  SRR4302533.733915/1‑94 (MQ=60)

                             CGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATAT                                                             <  SRR4302533.6191019/94‑1 (MQ=60)

                             CGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATAT                                                             <  SRR4302533.4496457/94‑1 (MQ=60)

                              GATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATA                                                            >  SRR4302533.4110486/1‑94 (MQ=60)

                               ATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAA                                                           >  SRR4302533.914789/1‑94 (MQ=60)

                               ATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAA                                                           <  SRR4302533.2088642/94‑1 (MQ=60)

                               ATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAA                                                           >  SRR4302533.1417514/1‑94 (MQ=60)

                               ATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAA                                                           <  SRR4302533.1570216/94‑1 (MQ=60)

                                TTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAA                                                          >  SRR4302533.2210071/1‑94 (MQ=60)

                                 TGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAA                                                         >  SRR4302533.2139387/1‑94 (MQ=60)

                                 TGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAA                                                         <  SRR4302533.4154469/94‑1 (MQ=60)

                                 TGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGCATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAA                                                         <  SRR4302533.3393549/94‑1 (MQ=60)

                                  GAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAG                                                        >  SRR4302533.1343709/1‑94 (MQ=60)

                                  GAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAG                                                        <  SRR4302533.5253492/94‑1 (MQ=60)

                                  GAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAG                                                        >  SRR4302533.923514/1‑94 (MQ=60)

                                   AAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGA                                                       <  SRR4302533.6343874/94‑1 (MQ=60)

                                   AAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGA                                                       >  SRR4302533.2651069/1‑94 (MQ=60)

                                    AGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGAT                                                      <  SRR4302533.6326703/94‑1 (MQ=60)

                                    AGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGAT                                                      >  SRR4302533.134498/1‑94 (MQ=60)

                                      ATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGA                                                    >  SRR4302533.1969756/1‑94 (MQ=60)

                                      ATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGA                                                    >  SRR4302533.3868442/1‑94 (MQ=60)

                                       TAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAG                                                   >  SRR4302533.171371/1‑94 (MQ=60)

                                        AGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGC                                                  >  SRR4302533.5387088/1‑94 (MQ=60)

                                        AGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGC                                                  <  SRR4302533.5332828/94‑1 (MQ=60)

                                        AGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGC                                                  >  SRR4302533.3124517/1‑94 (MQ=60)

                                         GTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCA                                                 <  SRR4302533.928992/94‑1 (MQ=60)

                                         GTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCA                                                 <  SRR4302533.6148440/94‑1 (MQ=60)

                                          TGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAG                                                <  SRR4302533.410562/94‑1 (MQ=60)

                                          TGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAG                                                >  SRR4302533.1817296/1‑94 (MQ=60)

                                          TGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAG                                                <  SRR4302533.3227716/94‑1 (MQ=60)

                                           GAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGC                                               >  SRR4302533.2461915/1‑94 (MQ=60)

                                           GAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGC                                               >  SRR4302533.3846306/1‑94 (MQ=60)

                                            AAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCA                                              >  SRR4302533.6028440/1‑94 (MQ=60)

                                             AGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAA                                             >  SRR4302533.3951870/1‑94 (MQ=60)

                                              GGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAAT                                            >  SRR4302533.5750620/1‑94 (MQ=60)

                                               GCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATC                                           >  SRR4302533.3661634/1‑94 (MQ=60)

                                                CAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCA                                          >  SRR4302533.5322490/1‑94 (MQ=60)

                                                CAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCA                                          >  SRR4302533.2433415/1‑94 (MQ=60)

                                                CAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCA                                          >  SRR4302533.5331980/1‑94 (MQ=60)

                                                CAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCA                                          >  SRR4302533.3538002/1‑94 (MQ=60)

                                                 AACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCAT                                         <  SRR4302533.5958789/94‑1 (MQ=60)

                                                 AACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCAT                                         >  SRR4302533.3054710/1‑94 (MQ=60)

                                                  ACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATG                                        >  SRR4302533.3994813/1‑94 (MQ=60)

                                                  ACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATG                                        <  SRR4302533.5850936/94‑1 (MQ=60)

                                                  ACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATG                                        <  SRR4302533.5885016/94‑1 (MQ=60)

                                                  ACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATG                                        >  SRR4302533.4273714/1‑94 (MQ=60)

                                                  ACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATG                                        >  SRR4302533.1481266/1‑94 (MQ=60)

                                                   CTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGC                                       <  SRR4302533.4626023/94‑1 (MQ=60)

                                                    TATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCC                                      >  SRR4302533.5248942/1‑94 (MQ=60)

                                                     ATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCG                                     <  SRR4302533.5965198/94‑1 (MQ=60)

                                                     ATCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCG                                     >  SRR4302533.2639498/1‑94 (MQ=60)

                                                      TCTGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGT                                    >  SRR4302533.5105872/1‑94 (MQ=60)

                                                        TGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTAT                                  >  SRR4302533.217259/1‑94 (MQ=60)

                                                        TGACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTAT                                  <  SRR4302533.4823141/94‑1 (MQ=60)

                                                         GACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGAAGCAATCATGCCGTATT                                 >  SRR4302533.5423669/1‑94 (MQ=60)

                                                          ACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTC                                <  SRR4302533.2158058/94‑1 (MQ=60)

                                                          ACAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTC                                <  SRR4302533.6221621/94‑1 (MQ=60)

                                                           CAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAGCCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCA                               <  SRR4302533.172308/94‑1 (MQ=60)

                                                           CAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCA                               <  SRR4302533.5944652/94‑1 (MQ=60)

                                                           CAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCA                               <  SRR4302533.1235516/94‑1 (MQ=60)

                                                           CAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCA                               <  SRR4302533.1475473/94‑1 (MQ=60)

                                                           CAACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCA                               <  SRR4302533.390178/94‑1 (MQ=60)

                                                            AACATCAGGGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGAGATAAAAGATGAGCAGCAATCATGCCGTATTCAC                              >  SRR4302533.1987763/1‑94 (MQ=60)

                                                             ACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCACC                             >  SRR4302533.4090902/1‑94 (MQ=60)

                                                             ACATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCACC                             >  SRR4302533.4649907/1‑94 (MQ=60)

                                                              CATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCACCT                            <  SRR4302533.4288907/94‑1 (MQ=60)

                                                               ATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCACCTT                           >  SRR4302533.518250/1‑94 (MQ=60)

                                                               ATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCACCTT                           >  SRR4302533.3347427/1‑94 (MQ=60)

                                                               ATCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCACCTT                           >  SRR4302533.5074155/1‑94 (MQ=60)

                                                               ATCAGTGGATGACGGCGTTGTATTCCCCCATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCACCTT                           >  SRR4302533.5674436/1‑94 (MQ=60)

                                                                TCAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCACCTTA                          <  SRR4302533.5815698/94‑1 (MQ=60)

                                                                 CAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCACCTTAC                         >  SRR4302533.1535284/1‑94 (MQ=60)

                                                                 CAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCACCTTAC                         >  SRR4302533.459501/1‑94 (MQ=60)

                                                                 CAGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCACCTTAC                         >  SRR4302533.789932/1‑94 (MQ=60)

                                                                  AGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCACCTTACA                        <  SRR4302533.3243503/94‑1 (MQ=60)

                                                                  AGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCACCTTACA                        >  SRR4302533.688867/1‑94 (MQ=60)

                                                                  AGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCACCTTACA                        <  SRR4302533.4489367/94‑1 (MQ=60)

                                                                  AGTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCACCTTACA                        >  SRR4302533.4668768/1‑94 (MQ=60)

                                                                   GTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCACCTTACAT                       <  SRR4302533.3784049/94‑1 (MQ=60)

                                                                   GTGGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCACCTTACAT                       <  SRR4302533.3135118/94‑1 (MQ=60)

                                                                     GGATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCACCTTACATTC                     >  SRR4302533.2751365/1‑94 (MQ=60)

                                                                      GATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCACCTTACATTCC                    >  SRR4302533.671950/1‑94 (MQ=60)

                                                                       ATGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCACCTTACATTCCC                   <  SRR4302533.4347516/94‑1 (MQ=60)

                                                                        TGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCACCTTACATTCCCA                  <  SRR4302533.2345741/94‑1 (MQ=60)

                                                                        TGACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCACCTTACATTCCCA                  <  SRR4302533.5394772/94‑1 (MQ=60)

                                                                         GACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCACCTTACATTCCCAG                 >  SRR4302533.2657291/1‑94 (MQ=60)

                                                                         GACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCACCTTACATTCCCAG                 >  SRR4302533.3696459/1‑94 (MQ=60)

                                                                         GACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCACCTTACATTCCCAG                 <  SRR4302533.342480/94‑1 (MQ=60)

                                                                         GACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCACCTTACATTCCCAG                 >  SRR4302533.2724434/1‑94 (MQ=60)

                                                                          ACGGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCACCTTACATTCCCAGA                <  SRR4302533.6003401/94‑1 (MQ=60)

                                                                            GGTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCACCTTACATTCCCAGAAG              <  SRR4302533.2111727/94‑1 (MQ=60)

                                                                             GTGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCACCTTACATTCCCAGAAGA             <  SRR4302533.2844031/94‑1 (MQ=60)

                                                                              TGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCACCTTACATTCCCAGAAGAT            <  SRR4302533.4160497/94‑1 (MQ=60)

                                                                              TGTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCACCTTACATTCCCAGAAGAT            >  SRR4302533.3397887/1‑94 (MQ=60)

                                                                               GTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCACCTTACATTCCCAGAAGATG           <  SRR4302533.4022100/94‑1 (MQ=60)

                                                                               GTTGTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCACCTTACATTCCCAGAAGATG           >  SRR4302533.2353807/1‑94 (MQ=60)

                                                                                  GTATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCACCTTACATTCCCAGAAGATGCAC        >  SRR4302533.8965/1‑94 (MQ=60)

                                                                                   TATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCACCTTACATTCCCAGAAGATGCACC       >  SRR4302533.3606961/1‑94 (MQ=60)

                                                                                    ATTCCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCACCTTACATTCCCAGAAGATGCACCA      <  SRR4302533.936070/94‑1 (MQ=60)

                                                                                    ATTCCCCAATAACATCAAACCGGACAGGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCACCTTACATTCCCAGAAGATGCACCA      <  SRR4302533.5131742/94‑1 (MQ=60)

                                                                                       CCCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCACCTTACATTCCCAGAAGATGCACCAAAA   >  SRR4302533.2037436/1‑94 (MQ=60)

                                                                                        CCCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCACCTTACATTCCCAGAAGATGCACCAAAAG  <  SRR4302533.3316111/94‑1 (MQ=60)

CGACGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCTCAATAACATCAAACCGGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCACCTTACATTCCCAGAAGATGCACCAAAAG  >  NC_000913/3362604‑3362785

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`