Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 1548 369.5 20095359 96.9% 19472402 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,575,446 +G coding (912/942 nt) gntR ← GntR

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,575,4451.G99.3% 1301.8 / ‑0.3 411coding (913/942 nt)gntRGntR
Reads supporting (aligned to +/- strand):  ref base . (1/2);  new base G (189/219);  total (190/221)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 464 total aligned reads displayed.

ATTTGTGGGCTTAAATAGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCA‑G‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCAATGTCATGACC  >  NC_000913/3575353‑3575532
                                                                                             |                                                                                        
aTTTGTGGGCTTAAATAGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCcagca                                                                                           <  1:8331864/93‑1 (MQ=255)
aTTTGTGGGCTTAAATAGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCcagca                                                                                           >  1:5083984/1‑93 (MQ=255)
aTTTGTGGGCTTAAATAGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCcagca                                                                                           <  1:4503250/93‑1 (MQ=255)
aTTTGTGGGCTTAAATAGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCcagca                                                                                           >  2:9169166/1‑93 (MQ=255)
aTTTGTGGGCTTAAATAGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCcagca                                                                                           <  2:1047892/93‑1 (MQ=255)
aTTTGTGGGCTTAAATAGATCCGCCCGGTGACAAGGTGAAACCTAAACCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCcagca                                                                                           <  2:6541862/93‑1 (MQ=255)
 tttGTGGGCTTAAATAGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCcagca‑g                                                                                         >  1:7468617/1‑93 (MQ=255)
  ttGTGGGCTTAAATAGATCCGCCGGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCcagca‑gg                                                                                        <  2:5527299/93‑2 (MQ=255)
    gtgGGCTTAAATAGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCcagca‑ggcg                                                                                      <  1:7188066/93‑4 (MQ=255)
    gtgGGCTTAAATAGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATAAGCGCcagca‑ggcg                                                                                      >  2:1317222/1‑90 (MQ=255)
     tgGGCTTAAATAGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCcagca‑ggcgt                                                                                     <  1:1004010/93‑5 (MQ=255)
     tgGGCTTAAATAGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCcagca‑ggcgt                                                                                     <  2:2242802/93‑5 (MQ=255)
     tgGGCTTAAATAGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCcagca‑ggcgt                                                                                     <  1:1462117/93‑5 (MQ=255)
        gCTTAAATAGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCa                                                                                  <  1:7705875/93‑1 (MQ=255)
         cTTAAATAGATCCGCCGGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAg                                                                                 <  1:8813071/93‑1 (MQ=255)
          ttAAATAGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAgc                                                                                <  1:6842481/93‑1 (MQ=255)
          ttAAATAGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAgc                                                                                >  1:1329741/1‑93 (MQ=255)
          ttAAATAGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAgc                                                                                >  1:1840619/1‑93 (MQ=255)
          ttAAATAGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAgc                                                                                <  1:2299665/93‑1 (MQ=255)
           tAAATAGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAgcg                                                                               >  1:5548922/1‑93 (MQ=255)
           tAAATAGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAgcg                                                                               <  1:8091510/93‑1 (MQ=255)
             aaTAGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAgcgca                                                                             >  1:9667117/1‑92 (MQ=255)
              aTAGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCa                                                                            >  2:7914783/1‑93 (MQ=255)
              aTAGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCa                                                                            <  1:9104359/93‑1 (MQ=255)
               tAGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCaa                                                                           >  1:3435288/1‑93 (MQ=255)
                 gATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATa                                                                         <  2:4645390/93‑1 (MQ=255)
                  aTCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGTGCCAATAc                                                                        <  2:5916420/93‑1 (MQ=255)
                  aTCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATAc                                                                        <  2:9475423/93‑1 (MQ=255)
                  aTCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATAc                                                                        <  2:3533698/93‑1 (MQ=255)
                  aTCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATAc                                                                        <  1:1099325/93‑1 (MQ=255)
                        ccGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCa                                                                  >  1:9486192/1‑93 (MQ=255)
                         cGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCAt                                                                 >  2:9694009/1‑93 (MQ=255)
                          ggTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATc                                                                <  2:8257010/93‑1 (MQ=255)
                            tGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCg                                                              >  2:9800970/1‑93 (MQ=255)
                             gACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGc                                                             <  2:1953467/93‑1 (MQ=255)
                             gACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGc                                                             >  1:8942667/1‑93 (MQ=255)
                             gACAAGGTGAAACCTAAATCTAACATTTTCGGGGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGc                                                             >  2:8126290/1‑93 (MQ=255)
                               cAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTc                                                           <  1:6043662/93‑1 (MQ=255)
                                aaGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCa                                                          <  1:2001456/93‑1 (MQ=255)
                                 aGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCAc                                                         >  1:1614129/1‑93 (MQ=255)
                                  ggTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCAcg                                                        <  2:4033005/93‑1 (MQ=255)
                                   gTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCAcgc                                                       <  2:9648224/93‑1 (MQ=255)
                                   gTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCA‑GACGTTCAGCGCCAATACTGCCCATCCGCTCAcgc                                                       <  2:1564132/93‑1 (MQ=255)
                                     gAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCA‑GTCGTTCAGCGCCAATACTGCCCATCCGCTCACgcgg                                                     >  2:8438669/1‑93 (MQ=255)
                                      aaaCCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCACTACTGCCCATCCGCTCACgcggc                                                    >  1:3001743/1‑93 (MQ=255)
                                      aaaCCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACgcggc                                                    <  1:5635899/93‑1 (MQ=255)
                                       aaCCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACgcggcg                                                   >  1:2612470/1‑93 (MQ=255)
                                        aCCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGt                                                  >  1:4290064/1‑93 (MQ=255)
                                        aCCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGt                                                  >  2:7033749/1‑93 (MQ=255)
                                        aCCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGt                                                  >  2:4866231/1‑93 (MQ=255)
                                          cTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATCCGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCa                                                <  1:1897992/93‑1 (MQ=255)
                                          cTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCa                                                <  2:2717969/93‑1 (MQ=255)
                                          cTAAATCTAACATTTGCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCa                                                <  2:6172550/93‑1 (MQ=255)
                                             aaTCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCa                                             <  1:4569391/93‑1 (MQ=255)
                                             aaTCTAACATTTGCGGTGTCACAGATTCGCCACTAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCa                                             <  2:5225030/93‑1 (MQ=255)
                                              aTCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCAc                                            <  1:9871967/93‑1 (MQ=255)
                                                 tAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCt                                         >  2:3767167/1‑93 (MQ=255)
                                                  aaCATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTc                                        >  2:902914/1‑93 (MQ=255)
                                                   aCATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCg                                       >  1:641640/1‑93 (MQ=255)
                                                     aTTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCa                                     >  1:9179856/1‑93 (MQ=255)
                                                     aTTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCa                                     <  1:3128245/93‑1 (MQ=255)
                                                     aTTTTCGGTGTCACAGATTCGCCACGAATACACGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCa                                     >  2:7596801/1‑93 (MQ=255)
                                                        ttCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGt                                  <  2:6860744/93‑1 (MQ=255)
                                                        ttCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGt                                  <  2:8885027/93‑1 (MQ=255)
                                                         tCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTc                                 >  2:6034841/1‑93 (MQ=255)
                                                           ggTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGt                               >  1:7981457/1‑93 (MQ=255)
                                                           ggTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGt                               <  2:8531037/93‑1 (MQ=255)
                                                           ggTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGt                               >  2:4441110/1‑93 (MQ=255)
                                                           ggTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGt                               <  2:3433735/93‑1 (MQ=255)
                                                            gtgtCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTg                              >  2:7182043/1‑93 (MQ=255)
                                                            gtgtCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTg                              >  1:9777290/1‑93 (MQ=255)
                                                            gtgtCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTg                              <  2:324476/93‑1 (MQ=255)
                                                             tgtCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCATCACGCTCGCCAGTCGTgg                             >  2:7301448/1‑93 (MQ=255)
                                                               tCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCt                           >  1:6164074/1‑93 (MQ=255)
                                                               tCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCt                           >  2:1020967/1‑93 (MQ=255)
                                                               tCACAGATTCGCCACGAATACGCGACAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGTCt                           >  2:5811660/1‑93 (MQ=255)
                                                                cacaGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTc                          >  2:4991399/1‑93 (MQ=255)
                                                                  caGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCa                        <  1:5934510/93‑1 (MQ=255)
                                                                     aTTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCa                     <  1:7027844/93‑1 (MQ=255)
                                                                       tCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCAcc                   <  2:633155/93‑1 (MQ=255)
                                                                        cGCCACGAATGCGCGCCAGCAGG‑AGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCt                  <  2:6933994/93‑1 (MQ=255)
                                                                         gCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTg                 >  1:2925098/1‑93 (MQ=255)
                                                                         gCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTg                 <  1:4847518/93‑1 (MQ=255)
                                                                          ccACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGa                >  2:3032568/1‑93 (MQ=255)
                                                                           cACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGAc               <  2:9275342/93‑1 (MQ=255)
                                                                            aCGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGAcc              <  2:3326580/93‑1 (MQ=255)
                                                                              gAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCaa            <  2:9785409/93‑1 (MQ=255)
                                                                               aaTACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCAAt           <  2:4344857/93‑1 (MQ=255)
                                                                               aaTACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCAAt           <  1:3286768/93‑1 (MQ=255)
                                                                               aaTACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCAAt           >  1:9353085/1‑93 (MQ=255)
                                                                               aaTACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACAAAt           >  1:8547893/1‑93 (MQ=255)
                                                                                 tACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCAATGt         >  2:2295447/1‑93 (MQ=255)
                                                                                  aCGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCAATGTc        >  2:4527936/1‑93 (MQ=255)
                                                                                  aCGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCAATGTc        >  1:5355438/1‑93 (MQ=255)
                                                                                  aCGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCAATGTc        <  1:4165809/93‑1 (MQ=255)
                                                                                    gcgcCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCAATGTCAt      <  1:779604/93‑1 (MQ=255)
                                                                                    gcgcCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCAATGTCAt      <  1:3719091/93‑1 (MQ=255)
                                                                                     cgcCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCAATGTCATg     <  2:5369394/93‑1 (MQ=255)
                                                                                       ccAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCAATGTCATGAc   >  2:1671959/1‑93 (MQ=255)
                                                                                        cagcagG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCTGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCAATGTCATGAcc  <  1:4779103/93‑1 (MQ=255)
                                                                                             |                                                                                        
ATTTGTGGGCTTAAATAGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCA‑G‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCAATGTCATGACC  >  NC_000913/3575353‑3575532

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output Only 200 of 240 total aligned reads displayed.
ATTTGTGGGCTTAAATAGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCA‑G‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCAATGTCATGACCGTGGAAA  >  NC_000913/3575353‑3575539
                                                                                              |                                                                                              
ATTTGTGGGCTTAAATAGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCA‑G                                                                                                <  SRR4302540.8726042/94‑1 (MQ=60)
ATTTGTGGGCTTAAATAGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCA‑G                                                                                                <  SRR4302540.4281037/94‑1 (MQ=60)
ATTTGTGGGCTTAAATAGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCA‑G                                                                                                <  SRR4302540.1956757/94‑1 (MQ=60)
ATTTGTGGGCTTAAATAGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCA‑G                                                                                                <  SRR4302540.8428577/94‑1 (MQ=60)
ATTTGTGGGCTTAAATAGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCA‑G                                                                                                >  SRR4302540.7551941/1‑94 (MQ=60)
ATTTGTGGGCTTAAATAGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCA‑G                                                                                                >  SRR4302540.813014/1‑94 (MQ=60)
ATTTGTGGGCTTAAATAGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCA‑G                                                                                                <  SRR4302540.4552065/94‑1 (MQ=60)
  TTGTGGGCTTAAATAGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCA‑Ggc                                                                                              <  SRR4302540.7460931/94‑3 (MQ=60)
   TGTGGGCTTAAATAGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCA‑Ggcg                                                                                             >  SRR4302540.4013355/1‑91 (MQ=60)
    GTGGGCTTAAATAGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGT                                                                                            <  SRR4302540.7268191/94‑1 (MQ=60)
    GTGGGCTTAAATAGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGT                                                                                            <  SRR4302540.1704723/94‑1 (MQ=60)
    GTGGGCTTAAATAGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATAAGCGCCAGCAGG‑CGT                                                                                            >  SRR4302540.8949800/1‑94 (MQ=60)
     TGGGCTTAAATAGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTT                                                                                           <  SRR4302540.1014201/94‑1 (MQ=60)
       GGCTTAAATAGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCA                                                                                         >  SRR4302540.2241823/1‑94 (MQ=60)
       GGCTTAAATAGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCACG‑CGTTCA                                                                                         >  SRR4302540.9504902/1‑94 (MQ=60)
        GCTTAAATAGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAG                                                                                        <  SRR4302540.7587315/94‑1 (MQ=60)
         CTTAAATAGATCCGCCGGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGC                                                                                       <  SRR4302540.8914970/94‑1 (MQ=60)
         CTTAAATAGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGC                                                                                       >  SRR4302540.1343634/1‑94 (MQ=60)
         CTTAAATAGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGC                                                                                       >  SRR4302540.1860784/1‑94 (MQ=60)
          TTAAATAGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCG                                                                                      >  SRR4302540.4469709/1‑94 (MQ=60)
          TTAAATAGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCG                                                                                      <  SRR4302540.2324400/94‑1 (MQ=60)
          TTAAATAGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCG                                                                                      <  SRR4302540.7581362/94‑1 (MQ=60)
          TTAAATAGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCG                                                                                      >  SRR4302540.5610050/1‑94 (MQ=60)
          TTAAATAGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCG                                                                                      <  SRR4302540.6918276/94‑1 (MQ=60)
           TAAATAGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGC                                                                                     <  SRR4302540.8185434/94‑1 (MQ=60)
            AAATAGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCC                                                                                    <  SRR4302540.5474875/94‑1 (MQ=60)
            AAATAGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCC                                                                                    >  SRR4302540.8184406/1‑94 (MQ=60)
            AAATAGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCA                                                                                    >  SRR4302540.9780896/1‑94 (MQ=60)
             AATAGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCA‑Ggtgttcatcgcca                                                                                   >  SRR4302540.5695148/1‑81 (MQ=60)
              ATAGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAA                                                                                  >  SRR4302540.3472633/1‑94 (MQ=60)
              ATAGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAA                                                                                  <  SRR4302540.9213764/94‑1 (MQ=60)
              ATAGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAA                                                                                  <  SRR4302540.9589933/94‑1 (MQ=60)
               TAGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAAT                                                                                 <  SRR4302540.6966477/94‑1 (MQ=60)
               TAGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAAT                                                                                 <  SRR4302540.5582573/94‑1 (MQ=60)
               TAGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAAT                                                                                 <  SRR4302540.6585275/94‑1 (MQ=60)
               TAGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAAT                                                                                 <  SRR4302540.3142181/94‑1 (MQ=60)
               TAGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAAT                                                                                 >  SRR4302540.9778852/1‑94 (MQ=60)
               AAGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTTTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAAT                                                                                 <  SRR4302540.6153249/94‑1 (MQ=60)
                AGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATA                                                                                >  SRR4302540.5198153/1‑94 (MQ=60)
                AGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATA                                                                                <  SRR4302540.6376855/94‑1 (MQ=60)
                 aagcctCCCGGGGACAAGGTGAAACCTAAAGCTAACATTTTCGGGGTCACAGAGTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATAC                                                                               <  SRR4302540.7365516/88‑1 (MQ=60)
                 GATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATAC                                                                               <  SRR4302540.7581498/94‑1 (MQ=60)
                 GATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATAC                                                                               <  SRR4302540.9391345/94‑1 (MQ=60)
                 GATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATAC                                                                               <  SRR4302540.9218815/94‑1 (MQ=60)
                 GATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATAC                                                                               <  SRR4302540.1818970/94‑1 (MQ=60)
                 GATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATAC                                                                               <  SRR4302540.9270035/94‑1 (MQ=60)
                 GATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATAC                                                                               <  SRR4302540.7365514/94‑1 (MQ=60)
                  ATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACT                                                                              <  SRR4302540.3996900/94‑1 (MQ=60)
                  ATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACT                                                                              <  SRR4302540.1110647/94‑1 (MQ=60)
                  ATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACT                                                                              >  SRR4302540.901131/1‑94 (MQ=60)
                   TCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTG                                                                             >  SRR4302540.3282124/1‑94 (MQ=60)
                    CCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGC                                                                            >  SRR4302540.1170678/1‑94 (MQ=60)
                      GCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCC                                                                          >  SRR4302540.8269755/1‑94 (MQ=60)
                      GCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCC                                                                          >  SRR4302540.2430446/1‑94 (MQ=60)
                      GCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCC                                                                          >  SRR4302540.6095763/1‑94 (MQ=60)
                       CCCGGTGACAAGGTGAAACCTAAATCTGACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCA                                                                         >  SRR4302540.9598663/1‑94 (MQ=60)
                       CCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCA                                                                         >  SRR4302540.9598662/1‑94 (MQ=60)
                       CCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCA                                                                         >  SRR4302540.2440688/1‑94 (MQ=60)
                        CCGGTGACAAGGTGAATCCTAAATCTAACATTTGCGGTGTAACAGATTCGCCACGAATACGCGCCAGCAGG‑CCTTCAGCGCCAATACTGCCCAT                                                                        <  SRR4302540.5631085/94‑1 (MQ=60)
                         CGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATC                                                                       <  SRR4302540.4912315/94‑1 (MQ=60)
                           GTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCG                                                                     <  SRR4302540.6169987/94‑1 (MQ=60)
                           GTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCG                                                                     >  SRR4302540.8776439/1‑94 (MQ=60)
                            TGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGC                                                                    >  SRR4302540.388010/1‑94 (MQ=60)
                            TGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGC                                                                    >  SRR4302540.9047701/1‑94 (MQ=60)
                              ACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTC                                                                  >  SRR4302540.6081538/1‑94 (MQ=60)
                              ACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTC                                                                  >  SRR4302540.161757/1‑94 (MQ=60)
                              ACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTC                                                                  <  SRR4302540.4850328/94‑1 (MQ=60)
                               CAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCC                                                                 >  SRR4302540.9602131/1‑94 (MQ=60)
                               CAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCA                                                                 <  SRR4302540.8627358/94‑1 (MQ=60)
                               CAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCA                                                                 <  SRR4302540.6110792/94‑1 (MQ=60)
                               CAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCA                                                                 <  SRR4302540.5677105/94‑1 (MQ=60)
                               CAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCA                                                                 <  SRR4302540.6753407/94‑1 (MQ=60)
                                AAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCAC                                                                >  SRR4302540.9396359/1‑94 (MQ=60)
                                AAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCAC                                                                >  SRR4302540.1631842/1‑94 (MQ=60)
                                AAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCAC                                                                <  SRR4302540.1963985/94‑1 (MQ=60)
                                AAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCAC                                                                <  SRR4302540.2023128/94‑1 (MQ=60)
                                AAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCAC                                                                >  SRR4302540.9043559/1‑94 (MQ=60)
                                AAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCAC                                                                <  SRR4302540.1139405/94‑1 (MQ=60)
                                 AGGTGAAACCTAAATTTAACATTTTCGGTGCCACAGATTCGCCAGGAATACGCGCCAGTAGG‑GGTTCAGCGCCAATACTGCCCATCCGCTCACG                                                               <  SRR4302540.1923063/94‑1 (MQ=60)
                                 AGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACG                                                               >  SRR4302540.156352/1‑94 (MQ=60)
                                 AGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACG                                                               >  SRR4302540.7233045/1‑94 (MQ=60)
                                  GGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGC                                                              >  SRR4302540.9906522/1‑94 (MQ=60)
                                   GTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCG                                                             >  SRR4302540.457154/1‑94 (MQ=60)
                                   GTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCG                                                             >  SRR4302540.7088560/1‑94 (MQ=60)
                                      AAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCG                                                          >  SRR4302540.3016199/1‑94 (MQ=60)
                                      AAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCG                                                          <  SRR4302540.5697923/94‑1 (MQ=60)
                                      AAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCG                                                          <  SRR4302540.4780752/94‑1 (MQ=60)
                                      AAACCTAAATCTAACATTTTCGGTGTCACAGATTCCCCACGAAAACGCGCCCGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCG                                                          <  SRR4302540.2245207/94‑1 (MQ=60)
                                       AACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGT                                                         >  SRR4302540.4336735/1‑94 (MQ=60)
                                         CCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCA                                                       >  SRR4302540.4661839/1‑94 (MQ=60)
                                         CCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCA                                                       >  SRR4302540.4839287/1‑94 (MQ=60)
                                         CCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCA                                                       <  SRR4302540.8367136/94‑1 (MQ=60)
                                         CCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCA                                                       >  SRR4302540.9908243/1‑94 (MQ=60)
                                          CTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATCCGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAG                                                      <  SRR4302540.1918758/94‑1 (MQ=60)
                                          CTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAG                                                      <  SRR4302540.10088236/94‑1 (MQ=60)
                                           TAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGC                                                     <  SRR4302540.10033230/94‑1 (MQ=60)
                                           TAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGC                                                     <  SRR4302540.926298/94‑1 (MQ=60)
                                            AAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCA                                                    >  SRR4302540.3494574/1‑94 (MQ=60)
                                             AATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCAC                                                   <  SRR4302540.5170580/94‑1 (MQ=60)
                                             AATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCAC                                                   >  SRR4302540.7991633/1‑94 (MQ=60)
                                             AATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCAC                                                   <  SRR4302540.2083072/94‑1 (MQ=60)
                                             AATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCAC                                                   <  SRR4302540.4618717/94‑1 (MQ=60)
                                             AATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCAC                                                   <  SRR4302540.9801604/94‑1 (MQ=60)
                                              ATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACG                                                  <  SRR4302540.9987260/94‑1 (MQ=60)
                                                CTACCATTTTCGGTGTCACAGATTCGCCACGAAGCCGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCT                                                <  SRR4302540.2056359/94‑1 (MQ=60)
                                                CTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCT                                                <  SRR4302540.10009855/94‑1 (MQ=60)
                                                CTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCT                                                >  SRR4302540.1404929/1‑94 (MQ=60)
                                                CTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCT                                                <  SRR4302540.679660/94‑1 (MQ=60)
                                                CTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCT                                                <  SRR4302540.6442553/94‑1 (MQ=60)
                                                  AACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCG                                              >  SRR4302540.1130440/1‑94 (MQ=60)
                                                  AACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCG                                              >  SRR4302540.648475/1‑94 (MQ=60)
                                                     ATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAA                                           <  SRR4302540.3162396/94‑1 (MQ=60)
                                                     ATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAA                                           >  SRR4302540.3604700/1‑94 (MQ=60)
                                                      TTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAG                                          <  SRR4302540.6113612/94‑1 (MQ=60)
                                                      TTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAG                                          <  SRR4302540.3328571/94‑1 (MQ=60)
                                                      TTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAG                                          <  SRR4302540.8478175/94‑1 (MQ=60)
                                                      TTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAG                                          <  SRR4302540.6444384/94‑1 (MQ=60)
                                                      TTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCA‑GCCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAG                                          <  SRR4302540.1492144/94‑1 (MQ=60)
                                                       TTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGT                                         <  SRR4302540.6050772/94‑1 (MQ=60)
                                                        TTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTC                                        <  SRR4302540.2697660/94‑1 (MQ=60)
                                                          CGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGT                                      >  SRR4302540.8074414/1‑94 (MQ=60)
                                                           GGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCTGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTG                                     >  SRR4302540.9801113/1‑94 (MQ=60)
                                                           GGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTG                                     >  SRR4302540.9891899/1‑94 (MQ=60)
                                                            GTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGG                                    <  SRR4302540.8073502/94‑1 (MQ=60)
                                                            GTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGG                                    <  SRR4302540.4437939/94‑1 (MQ=60)
                                                             TGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCCCGCGGCGTCAGCACGCTCGCAAGTCGTCGC                                   >  SRR4302540.9897018/1‑94 (MQ=60)
                                                             TGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGC                                   <  SRR4302540.5474915/94‑1 (MQ=60)
                                                             TGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGC                                   >  SRR4302540.1035254/1‑94 (MQ=60)
                                                              GTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCT                                  >  SRR4302540.8193614/1‑94 (MQ=60)
                                                              GTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCT                                  >  SRR4302540.4881152/1‑94 (MQ=60)
                                                              GTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCT                                  >  SRR4302540.2459098/1‑94 (MQ=60)
                                                              GTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCT                                  >  SRR4302540.6232759/1‑94 (MQ=60)
                                                               TCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTC                                 <  SRR4302540.9314131/94‑1 (MQ=60)
                                                                CACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCC                                <  SRR4302540.3044894/94‑1 (MQ=60)
                                                                CACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCC                                >  SRR4302540.3290082/1‑94 (MQ=60)
                                                                  CAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCAT                              <  SRR4302540.6000103/94‑1 (MQ=60)
                                                                  CAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCAT                              <  SRR4302540.582596/94‑1 (MQ=60)
                                                                  CAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCAT                              <  SRR4302540.3264035/94‑1 (MQ=60)
                                                                   AGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATC                             >  SRR4302540.1874960/1‑94 (MQ=60)
                                                                   AGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATC                             >  SRR4302540.9171964/1‑94 (MQ=60)
                                                                   AGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATC                             >  SRR4302540.3019566/1‑94 (MQ=60)
                                                                   AGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATC                             >  SRR4302540.9171963/1‑94 (MQ=60)
                                                                    GATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCA                            <  SRR4302540.1374263/94‑1 (MQ=60)
                                                                    GATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCA                            >  SRR4302540.3644645/1‑94 (MQ=60)
                                                                     ATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCAC                           <  SRR4302540.7105929/94‑1 (MQ=60)
                                                                      TTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACC                          <  SRR4302540.3836110/94‑1 (MQ=60)
                                                                      TTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACC                          >  SRR4302540.7822146/1‑94 (MQ=60)
                                                                      TTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACC                          <  SRR4302540.286389/94‑1 (MQ=60)
                                                                         GCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGA                       <  SRR4302540.4899452/94‑1 (MQ=60)
                                                                         GCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATAACCTGA                       >  SRR4302540.4411720/1‑94 (MQ=60)
                                                                         CCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGA                       <  SRR4302540.3499276/94‑1 (MQ=60)
                                                                          CCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGAC                      <  SRR4302540.3134946/94‑1 (MQ=60)
                                                                          CCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGAC                      >  SRR4302540.1485263/1‑94 (MQ=60)
                                                                          CCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGAC                      >  SRR4302540.4900294/1‑94 (MQ=60)
                                                                          CCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGACCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGAC                      >  SRR4302540.4900295/1‑94 (MQ=60)
                                                                           CACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACC                     >  SRR4302540.9364481/1‑94 (MQ=60)
                                                                           CACGAATACGCGCCAGCAGG‑CGGTCAGAGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCacaca                     >  SRR4302540.4514138/1‑89 (MQ=60)
                                                                            ACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCA                    >  SRR4302540.4608964/1‑94 (MQ=60)
                                                                            ACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCA                    <  SRR4302540.9788253/94‑1 (MQ=60)
                                                                              GAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGCCCAAT                  >  SRR4302540.5813362/1‑94 (MQ=60)
                                                                              GAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCAAT                  >  SRR4302540.1385864/1‑94 (MQ=60)
                                                                              GAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCAAT                  >  SRR4302540.8012115/1‑94 (MQ=60)
                                                                              GAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCAAT                  >  SRR4302540.9464483/1‑94 (MQ=60)
                                                                              GAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCAAT                  >  SRR4302540.7816639/1‑94 (MQ=60)
                                                                              GAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCAAT                  >  SRR4302540.7816640/1‑94 (MQ=60)
                                                                              GAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACAAAT                  >  SRR4302540.8647195/1‑94 (MQ=60)
                                                                              GAATACGCGCCAGCAGG‑AGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCAAT                  <  SRR4302540.9075382/94‑1 (MQ=60)
                                                                               AATACGCGCCAGCAGG‑CGTTCAGCTCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCAATG                 <  SRR4302540.3322712/94‑1 (MQ=60)
                                                                               AATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCAATG                 <  SRR4302540.7162562/94‑1 (MQ=60)
                                                                               AATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCAATG                 <  SRR4302540.3322710/94‑1 (MQ=60)
                                                                               AATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCAATG                 <  SRR4302540.2751433/94‑1 (MQ=60)
                                                                                ATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCAATGT                >  SRR4302540.5286224/1‑94 (MQ=60)
                                                                                 atcgccccagcagG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCAATGTC               <  SRR4302540.2967708/81‑1 (MQ=60)
                                                                                 TACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCAATGTC               >  SRR4302540.5414250/1‑94 (MQ=60)
                                                                                 TACCCGCCAGCAGG‑CGTTCAGCTCCATTACTTCCCTTCCGCTCACGCGGCGTCAGCACGCTCTCAAGTCGTGGCTCCATCACCTGACCAATGTC               <  SRR4302540.7881483/94‑1 (MQ=60)
                                                                                  ACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCAATGTCA              <  SRR4302540.2752598/94‑1 (MQ=60)
                                                                                  ACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCAATGTCA              <  SRR4302540.4210972/94‑1 (MQ=60)
                                                                                  ACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCAATGTCA              <  SRR4302540.1897268/94‑1 (MQ=60)
                                                                                    GCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCAATGTCATG            <  SRR4302540.6074153/94‑1 (MQ=60)
                                                                                    GCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCAATGTCATG            <  SRR4302540.787910/94‑1 (MQ=60)
                                                                                    CCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCAATGTCATG            <  SRR4302540.7144411/94‑1 (MQ=60)
                                                                                     CGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCAATGTCATGA           <  SRR4302540.479094/94‑1 (MQ=60)
                                                                                      GCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCAATGTCATGAC          >  SRR4302540.7336425/1‑94 (MQ=60)
                                                                                      GCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCAATGTCATGAC          >  SRR4302540.4605410/1‑94 (MQ=60)
                                                                                       CCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCAATGTCATGACC         >  SRR4302540.2998739/1‑94 (MQ=60)
                                                                                       CCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCAATGTCATGACC         >  SRR4302540.1813185/1‑94 (MQ=60)
                                                                                       CCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCAATGTCATGACC         <  SRR4302540.10163751/94‑1 (MQ=60)
                                                                                       CCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCAATGTCATGACA         <  SRR4302540.8526205/94‑1 (MQ=60)
                                                                                        CAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCTGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCAATGTCATGACCG        <  SRR4302540.4830168/94‑1 (MQ=60)
                                                                                        CAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCAATGTCATGACCG        >  SRR4302540.6700916/1‑94 (MQ=60)
                                                                                         AGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCAATGTCATGACCGT       >  SRR4302540.9241194/1‑94 (MQ=60)
                                                                                         AGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCAATGTCATGACCGT       <  SRR4302540.7167626/94‑1 (MQ=60)
                                                                                         AGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCAATGTCATGACCGT       >  SRR4302540.2927596/1‑94 (MQ=60)
                                                                                          GCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCAATGTCATGACCGTG      >  SRR4302540.5230377/1‑94 (MQ=60)
                                                                                           cagG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCAATGTCATGACCGTGG     <  SRR4302540.3872343/91‑1 (MQ=60)
                                                                                           cagG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCAATGTCATGACCGTGG     >  SRR4302540.1424994/4‑94 (MQ=60)
                                                                                            agG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCAATGTCATGACCGTGGA    >  SRR4302540.2308460/3‑94 (MQ=60)
                                                                                            G‑G‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCAATGTCATGACCGTGGAA   <  SRR4302540.3011616/94‑1 (MQ=60)
                                                                                              G‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCAATGTCATGACCGTGGAAA  <  SRR4302540.4608209/94‑1 (MQ=60)
                                                                                              G‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCAATGTCATGACCGTGGAAA  <  SRR4302540.453137/94‑1 (MQ=60)
                                                                                              |                                                                                              
ATTTGTGGGCTTAAATAGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCA‑G‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCAATGTCATGACCGTGGAAA  >  NC_000913/3575353‑3575539

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑