Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	1548	369.5	20095359	96.9%	19472402	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,579,597	A→G	H35R (CAT→CGT)	yhhZ →	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,579,597	0	A	G	100.0%	719.1 / NA	223	H35R (CAT→CGT)	yhhZ	hypothetical protein
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (102/121); total (102/121)

Only 100 of 230 total aligned reads displayed.

TTACCTGACAGTAACGGGAGAACAACAAGGAAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCATGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTTCCATGGTATAACATTTTGTAAAT  >  NC_000913/3579508‑3579686

ttACCTGACAGTAACGGGAGAACAACAAGGAAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGa                                                                                        <  1:9976187/93‑1 (MQ=255)

ttACCTGACAGTAACGGGAGAACAACAAGGAAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGa                                                                                        <  2:1858484/93‑1 (MQ=255)

   ccTGACAGTAACGGGAGAACAACAAGGAAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGa                                                                                     <  1:9674424/93‑1 (MQ=255)

   ccTGACAGTAACGGGAGAACAACAAGGAAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGa                                                                                     >  2:6972842/1‑93 (MQ=255)

    cTGACAGTAACGGGAGAACAACAAGGAAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGAt                                                                                    >  2:87878/1‑93 (MQ=255)

    cTGACAGTAACGGGAGAACAACAAGGAAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGAt                                                                                    >  2:8188704/1‑93 (MQ=255)

    cTGACAGTAACGGGAGAACAACAAGGAAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGAt                                                                                    >  1:5618398/1‑93 (MQ=255)

     tGACAGTAACGGGAGAACAACAAGGAAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATg                                                                                   >  2:1197320/1‑93 (MQ=255)

       aCAGTAACGGGAGAACAACAAGGAAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGAAATCGTTGGCAGAGCGGGCGTGAGGATgca                                                                                 >  1:3330036/1‑91 (MQ=255)

          gTAACGGGAGAACAACAAGGAAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAata                                                                              >  2:7191931/1‑93 (MQ=255)

            aaCGGGAGAACAACAAGGAAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATAtt                                                                            <  1:7564289/93‑1 (MQ=255)

             aCGGGAGAACAACAAGGAAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATAttt                                                                           >  1:1016722/1‑93 (MQ=255)

               gggAGAACAACAAGGAAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTAc                                                                         <  1:8661794/93‑1 (MQ=255)

               gggAGAACAACAAGGAAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTAc                                                                         <  1:5234667/93‑1 (MQ=255)

               gggAGAACAACAAGGAAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTAc                                                                         <  2:2925268/93‑1 (MQ=255)

               gggAGAACAACAAGGAAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTAc                                                                         >  1:5516678/1‑93 (MQ=255)

                ggAGAACAACAAGGAAGCATCTCCGCAGGTTGTGTGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACa                                                                        <  1:6701958/93‑1 (MQ=255)

                ggAGAACAACAAGGAAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACa                                                                        >  1:3386660/1‑93 (MQ=255)

                ggAGAACAACAAGGAAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACa                                                                        <  1:9156542/93‑1 (MQ=255)

                ggAGAACAACAAGGAAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACa                                                                        <  1:541445/93‑1 (MQ=255)

                ggAGAACAACAAGGAAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACa                                                                        >  1:3716413/1‑93 (MQ=255)

                ggAGAACAACAAGGAAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACa                                                                        <  2:1542381/93‑1 (MQ=255)

                 gagaACAACAAGGAAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACAt                                                                       <  1:1139453/93‑1 (MQ=255)

                  agaACAACAAGGAAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACAtt                                                                      <  1:6483150/93‑1 (MQ=255)

                   gaACAACAAGGAAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATtc                                                                     >  1:6771768/1‑93 (MQ=255)

                   gaACAACAAGGAAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATtc                                                                     >  1:8756197/1‑93 (MQ=255)

                     acaacaAGGAAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATtctc                                                                   <  2:5788059/93‑1 (MQ=255)

                      caacaaGGAAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCa                                                                  <  2:8522903/93‑1 (MQ=255)

                      caacaaGGAAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCa                                                                  <  1:9793092/93‑1 (MQ=255)

                      caacaaGGAAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCa                                                                  <  1:19249/93‑1 (MQ=255)

                       aacaaGGAAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCAc                                                                 >  2:3296590/1‑93 (MQ=255)

                         caaGGAAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCActc                                                               <  2:6896217/93‑1 (MQ=255)

                          aaGGAAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCActct                                                              <  1:2162347/93‑1 (MQ=255)

                           aGGAAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCtt                                                             <  2:9498468/93‑1 (MQ=255)

                              aaGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTaaa                                                          <  1:7201448/93‑1 (MQ=255)

                               aGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAaat                                                         >  2:733811/1‑93 (MQ=255)

                                 cATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAaataa                                                       <  1:3144432/93‑1 (MQ=255)

                                   tctcCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAataata                                                     >  2:606579/1‑93 (MQ=255)

                                   tctcCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTATCACTCTTAAataata                                                     >  1:5701762/1‑93 (MQ=255)

                                    ctcCGCAGGTTGTGGGACTTCTTAGTCTACAGGTAATCGTTGGCAGAGCGGTCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAatat                                                    <  1:7857691/93‑1 (MQ=255)

                                    ctcCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAatat                                                    <  1:2678452/93‑1 (MQ=255)

                                     tcCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTATATTCTCACTCTTAAATAATAtt                                                   >  1:2785084/1‑93 (MQ=255)

                                      ccGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATta                                                  >  2:5176756/1‑93 (MQ=255)

                                        gCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATtaat                                                <  1:5548276/93‑1 (MQ=255)

                                        gCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATtaat                                                >  1:8809060/1‑93 (MQ=255)

                                          aGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGTGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATtaataa                                              >  1:1104810/1‑93 (MQ=255)

                                           ggTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTaataat                                             >  2:3409663/1‑93 (MQ=255)

                                           ggTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATT‑TTACTCTTAAAAAATATTAataata                                            >  2:7401320/1‑93 (MQ=255)

                                            gTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAataata                                            <  2:7913474/93‑1 (MQ=255)

                                              tgtgGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACg                                          <  1:4059453/93‑1 (MQ=255)

                                              tgtgGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACg                                          <  1:1666629/93‑1 (MQ=255)

                                               gtgGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACgg                                         <  2:4009062/93‑1 (MQ=255)

                                               gtgGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACgg                                         <  2:4031427/93‑1 (MQ=255)

                                               gtgGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACgg                                         >  1:9385824/1‑93 (MQ=255)

                                                tgGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCTCTCTTAAATAATATTAATAATACggg                                        <  1:2094418/93‑1 (MQ=255)

                                                 gggACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACgggg                                       >  2:3754757/1‑93 (MQ=255)

                                                  ggACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGc                                      >  2:5300474/1‑93 (MQ=255)

                                                  ggACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGc                                      <  1:4053141/93‑1 (MQ=255)

                                                  ggACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGc                                      >  1:2007468/1‑93 (MQ=255)

                                                         tGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTc                               >  2:1508417/1‑93 (MQ=255)

                                                           aGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTcac                             >  2:6408151/1‑93 (MQ=255)

                                                           aGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTcac                             <  1:6952309/93‑1 (MQ=255)

                                                            gTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTcaca                            <  1:5342106/93‑1 (MQ=255)

                                                            gTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTcaca                            >  2:6566153/1‑93 (MQ=255)

                                                            gTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTcaca                            >  2:3173723/1‑93 (MQ=255)

                                                            gTCTACAGGGAATCGCTGGCAGAGCGGGCGTGAGGATGAAATAGTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTcaca                            >  2:6566155/1‑93 (MQ=255)

                                                             tCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAg                           >  2:9556642/1‑93 (MQ=255)

                                                             tCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAg                           <  1:89460/93‑1 (MQ=255)

                                                              cTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGt                          <  2:958907/93‑1 (MQ=255)

                                                              cTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGt                          <  2:4936853/93‑1 (MQ=255)

                                                              cTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGt                          <  1:144450/93‑1 (MQ=255)

                                                               tACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGtt                         >  1:8298348/1‑93 (MQ=255)

                                                                aCAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGTAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTTc                        >  1:4232457/1‑93 (MQ=255)

                                                                aCAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTTc                        <  1:7007925/93‑1 (MQ=255)

                                                                 cAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTTcc                       >  2:4038878/1‑93 (MQ=255)

                                                                  aGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTTCCa                      <  1:4990107/93‑1 (MQ=255)

                                                                  aGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTTCCa                      <  1:6636727/93‑1 (MQ=255)

                                                                  aGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTAGTTCACAGTTcct                      >  2:7087615/1‑92 (MQ=255)

                                                                   ggTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTTCCAt                     >  1:5123961/1‑93 (MQ=255)

                                                                    gTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTTCCATg                    <  2:3153875/93‑1 (MQ=255)

                                                                    gTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTTCCATg                    >  2:2038084/1‑93 (MQ=255)

                                                                     tAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTTCCATgg                   >  1:4138328/1‑93 (MQ=255)

                                                                        tCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTcaca                            <  2:6993200/81‑1 (MQ=255)

                                                                        tCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTTCCATGGtat                <  2:9850760/93‑1 (MQ=255)

                                                                        tCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTTCCATGGtat                <  2:3929672/93‑1 (MQ=255)

                                                                        gcGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTTCCATGGtat                <  1:8221308/92‑1 (MQ=255)

                                                                          gTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTTCCATGGTATaa              <  2:9279438/93‑1 (MQ=255)

                                                                            tGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTTCCATGGTATAACa            <  1:2567989/93‑1 (MQ=255)

                                                                              gCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTTCCATGGTATAACAtt          >  2:2237575/1‑93 (MQ=255)

                                                                               gagagCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTTCCATGGTATAACAttt         <  1:5100352/92‑1 (MQ=255)

                                                                               cAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTTCCATGGTATAACAttt         <  2:903060/93‑1 (MQ=255)

                                                                               cAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTTCCATGGTATAACAttt         <  1:9623935/93‑1 (MQ=255)

                                                                                 gagCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTTACATGGTATAACATTTTg       >  1:6128813/1‑93 (MQ=255)

                                                                                  agCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTTCCATGGTATAACATTTTGt      <  1:4077004/93‑1 (MQ=255)

                                                                                  agCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTTCCATGGTATAACATTTTGt      >  1:71280/1‑93 (MQ=255)

                                                                                  agCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTTCCATGGTATAACATTTTGt      >  1:2288034/1‑93 (MQ=255)

                                                                                   gCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTTCCATGGTATAACATTTTGTa     <  2:4792923/93‑1 (MQ=255)

                                                                                   gCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTTCCATGGTATAACATTTTGTa     <  2:209955/93‑1 (MQ=255)

                                                                                    cGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTTCCATGGTATAACATTTTGTaa    <  1:4580849/93‑1 (MQ=255)

                                                                                     gggCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTTCCATGGTATAACATTTTGTaaa   <  1:4371493/93‑1 (MQ=255)

TTACCTGACAGTAACGGGAGAACAACAAGGAAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCATGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTTCCATGGTATAACATTTTGTAAAT  >  NC_000913/3579508‑3579686

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

TTACCTGACAGTAACGGGAGAACAACAAGGAAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCATGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTTCCATGGTATAACATTTTGTAAATTAAT  >  NC_000913/3579508‑3579690

TTACCTGACAGTAACGGGAGAACAACAAGGAAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAG                                                                                           <  SRR4302540.10092527/94‑1 (MQ=60)

  ACCTGACAGTAACGGGAGAACAACAAGGAAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGA                                                                                         >  SRR4302540.1547701/1‑94 (MQ=60)

   CCTGACAGTAACGGGAGAACAACAAGGAAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGAT                                                                                        <  SRR4302540.9788257/94‑1 (MQ=60)

   CCTGACAGTAACGGGAGAACAACAAGGAAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGAT                                                                                        >  SRR4302540.5680221/1‑94 (MQ=60)

   CCTGACAGTAACGGGAGAACAACAAGGAAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGAT                                                                                        >  SRR4302540.4168014/1‑94 (MQ=60)

      GACAGTAACGGGAGAACAACAAGGAAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAA                                                                                     >  SRR4302540.8993168/1‑94 (MQ=60)

      GACAGTAACGGGAGAACAACAAGGAAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGAAATCGTTGGCAGAGCGGGCGTGAGGATGCA                                                                                     >  SRR4302540.3366594/1‑94 (MQ=60)

        CAGTAACGGGAGAACAACAAGGAAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAAT                                                                                   <  SRR4302540.537926/94‑1 (MQ=60)

            AACGGGAGAACAACAAGGAAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTT                                                                               >  SRR4302540.1027026/1‑94 (MQ=60)

            AACGGGAGAACAACAAGGAAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTT                                                                               <  SRR4302540.7649127/94‑1 (MQ=60)

              CGGGAGAACAACAAGGAAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTAC                                                                             <  SRR4302540.3158963/94‑1 (MQ=60)

              CGGGAGAACAACAAGGAAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTAC                                                                             <  SRR4302540.4555611/94‑1 (MQ=60)

              CGGGAGAACAACAAGGAAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTAC                                                                             >  SRR4302540.5577438/1‑94 (MQ=60)

               GGGAGAACAACAAGGAAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACA                                                                            >  SRR4302540.3423615/1‑94 (MQ=60)

               GGGAGAACAACAAGGAAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACA                                                                            <  SRR4302540.8762396/94‑1 (MQ=60)

               GGGAGAACAACAAGGAAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACA                                                                            >  SRR4302540.3756963/1‑94 (MQ=60)

               GGGAGAACAACAAGGAAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACA                                                                            <  SRR4302540.5291774/94‑1 (MQ=60)

               GGGAGAACAACAAGGAAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGAATGAAATATTTACT                                                                            >  SRR4302540.8842364/1‑94 (MQ=60)

                GGAGAACAACAAGGAAGCATCTCCGCAGGTTGTGTGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACAT                                                                           <  SRR4302540.6775934/94‑1 (MQ=60)

                GGAGAACAACAAGGAAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACAT                                                                           <  SRR4302540.2034019/94‑1 (MQ=60)

                GGAGAACAACAAGGAAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACAT                                                                           <  SRR4302540.6505523/94‑1 (MQ=60)

                GGAGAACAACAAGGAAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACAT                                                                           <  SRR4302540.151739/94‑1 (MQ=60)

                GGAGAACAACAAGGAAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACAT                                                                           <  SRR4302540.547308/94‑1 (MQ=60)

                GGAGAACAACAAGGAAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACAT                                                                           <  SRR4302540.2573731/94‑1 (MQ=60)

                GGAGAACAACAAGGAAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACAT                                                                           <  SRR4302540.9266463/94‑1 (MQ=60)

                 GAGAACAACAAGGAAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATT                                                                          >  SRR4302540.2165331/1‑94 (MQ=60)

                 GAGAACAACAAGGAAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATT                                                                          <  SRR4302540.1151373/94‑1 (MQ=60)

                  AGAACAACAAGGAAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTC                                                                         >  SRR4302540.7843226/1‑94 (MQ=60)

                  AGAACAACAAGGAAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTC                                                                         >  SRR4302540.8857760/1‑94 (MQ=60)

                  AGAACAACAAGGAAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTC                                                                         >  SRR4302540.6846602/1‑94 (MQ=60)

                  AGAACAACAAGGAAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTC                                                                         <  SRR4302540.6555259/94‑1 (MQ=60)

                   GAACAACAAGGAAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCT                                                                        <  SRR4302540.8051831/94‑1 (MQ=60)

                      CAACAAGGAAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCAC                                                                     <  SRR4302540.19456/94‑1 (MQ=60)

                      CAACAAGGAAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCAC                                                                     <  SRR4302540.9907803/94‑1 (MQ=60)

                       AACAAGGAAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACT                                                                    >  SRR4302540.2086669/1‑94 (MQ=60)

                       AACAAGGAAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACT                                                                    <  SRR4302540.5094691/94‑1 (MQ=60)

                       AACAAGGAAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACT                                                                    >  SRR4302540.5612709/1‑94 (MQ=60)

                         CAAGGAAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCT                                                                  <  SRR4302540.2290458/94‑1 (MQ=60)

                         CAAGGAAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCT                                                                  <  SRR4302540.9121756/94‑1 (MQ=60)

                          AAGGAAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTT                                                                 <  SRR4302540.2185641/94‑1 (MQ=60)

                            GGAAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATAAAATATTTACATTCTCACTCTTAA                                                               <  SRR4302540.9576556/94‑1 (MQ=60)

                              AAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAAT                                                             <  SRR4302540.1984876/94‑1 (MQ=60)

                              AAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAAT                                                             <  SRR4302540.7281734/94‑1 (MQ=60)

                               AGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATA                                                            <  SRR4302540.2746511/94‑1 (MQ=60)

                                 CATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAAT                                                          <  SRR4302540.3178701/94‑1 (MQ=60)

                                  ATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATA                                                         >  SRR4302540.9043966/1‑94 (MQ=60)

                                  ATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATA                                                         >  SRR4302540.8591345/1‑94 (MQ=60)

                                  ATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTATCACTCTTAAATAATA                                                         >  SRR4302540.5764543/1‑94 (MQ=60)

                                   TCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATAT                                                        <  SRR4302540.5217533/94‑1 (MQ=60)

                                    CTCCGCAGGTTGTGGGACTTCTTAGTCTACAGGTAATCGTTGGCAGAGCGGTCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATT                                                       <  SRR4302540.7949505/94‑1 (MQ=60)

                                    CTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTATATTCTCACTCTTAAATAATATT                                                       >  SRR4302540.2815167/1‑94 (MQ=60)

                                    CTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATT                                                       <  SRR4302540.2707434/94‑1 (MQ=60)

                                    CTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATT                                                       <  SRR4302540.9750973/94‑1 (MQ=60)

                                    CTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATT                                                       <  SRR4302540.9750975/94‑1 (MQ=60)

                                     TCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTA                                                      <  SRR4302540.6699171/94‑1 (MQ=60)

                                      CCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAA                                                     >  SRR4302540.8570330/1‑94 (MQ=60)

                                       CGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAAT                                                    >  SRR4302540.8910907/1‑94 (MQ=60)

                                       CGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAAT                                                    >  SRR4302540.1939681/1‑94 (MQ=60)

                                        GCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATA                                                   <  SRR4302540.5609401/94‑1 (MQ=60)

                                         CAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGTGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAA                                                  >  SRR4302540.1116203/1‑94 (MQ=60)

                                         CAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAA                                                  <  SRR4302540.3631162/94‑1 (MQ=60)

                                         CAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAA                                                  >  SRR4302540.1116202/1‑94 (MQ=60)

                                          AGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAAT                                                 <  SRR4302540.7542831/94‑1 (MQ=60)

                                           GGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATA                                                >  SRR4302540.5405877/1‑94 (MQ=60)

                                            GTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATAC                                               >  SRR4302540.2368967/1‑94 (MQ=60)

                                            GTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATAC                                               >  SRR4302540.7246000/1‑94 (MQ=60)

                                             TTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACG                                              <  SRR4302540.5183877/94‑1 (MQ=60)

                                              TGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGG                                             <  SRR4302540.4103218/94‑1 (MQ=60)

                                              TGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGG                                             <  SRR4302540.1684765/94‑1 (MQ=60)

                                              TGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGG                                             >  SRR4302540.9497538/1‑94 (MQ=60)

                                               GTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGG                                            <  SRR4302540.4365714/94‑1 (MQ=60)

                                               GTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGG                                            <  SRR4302540.4182158/94‑1 (MQ=60)

                                                TGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCTCTCTTAAATAATATTAATAATACGGGG                                           <  SRR4302540.2116909/94‑1 (MQ=60)

                                                 GGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGC                                          >  SRR4302540.2029184/1‑94 (MQ=60)

                                                 GGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGC                                          <  SRR4302540.3298318/94‑1 (MQ=60)

                                                 GGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGC                                          >  SRR4302540.9905324/1‑94 (MQ=60)

                                                  GGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCGCTCTTAAATAATATTAATAATACGGGGCT                                         <  SRR4302540.4099889/94‑1 (MQ=60)

                                                  GGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCT                                         <  SRR4302540.4096841/94‑1 (MQ=60)

                                                   GACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTT                                        >  SRR4302540.6824606/1‑94 (MQ=60)

                                                     CTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGG                                      >  SRR4302540.8900413/1‑94 (MQ=60)

                                                     CTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGG                                      >  SRR4302540.9974330/1‑94 (MQ=60)

                                                        CTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTC                                   >  SRR4302540.3323913/1‑94 (MQ=60)

                                                           AGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACA                                <  SRR4302540.7029665/94‑1 (MQ=60)

                                                           AGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACA                                <  SRR4302540.7029666/94‑1 (MQ=60)

                                                            GTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTTCATTCTCACTCTTAAATAATATTAATAATTCGGGGCTTGGTTCACAG                               <  SRR4302540.5894867/94‑1 (MQ=60)

                                                            GTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAG                               >  SRR4302540.1228442/1‑94 (MQ=60)

                                                            GTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAG                               <  SRR4302540.5400694/94‑1 (MQ=60)

                                                            GTCTACAGGTAATCGTTAGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAG                               <  SRR4302540.5719073/94‑1 (MQ=60)

                                                             TCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGT                              <  SRR4302540.90402/94‑1 (MQ=60)

                                                              CTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTT                             >  SRR4302540.8394701/1‑94 (MQ=60)

                                                              CTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTT                             <  SRR4302540.5525190/94‑1 (MQ=60)

                                                              CTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTT                             <  SRR4302540.145954/94‑1 (MQ=60)

                                                               TACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGTAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTTC                            >  SRR4302540.4278525/1‑94 (MQ=60)

                                                                ACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTTCC                           <  SRR4302540.7085712/94‑1 (MQ=60)

                                                                  AGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTTCCAT                         >  SRR4302540.8365890/1‑94 (MQ=60)

                                                                  AGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTTCCAT                         >  SRR4302540.5179455/1‑94 (MQ=60)

                                                                  AGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTTCCAT                         >  SRR4302540.5179454/1‑94 (MQ=60)

                                                                  AGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTTCCAT                         <  SRR4302540.5044136/94‑1 (MQ=60)

                                                                  AGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTTCCAT                         <  SRR4302540.4950836/94‑1 (MQ=60)

                                                                  AGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTTCCAT                         <  SRR4302540.6710174/94‑1 (MQ=60)

                                                                  AGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTTCCAT                         >  SRR4302540.4201932/1‑94 (MQ=60)

                                                                   GGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTTCCATG                        <  SRR4302540.7198548/94‑1 (MQ=60)

                                                                    GTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTTCCATGG                       >  SRR4302540.6750407/1‑94 (MQ=60)

                                                                    GTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTTCCATGG                       >  SRR4302540.4183104/1‑94 (MQ=60)

                                                                      AATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTTCCATGGTA                     <  SRR4302540.3393660/94‑1 (MQ=60)

                                                                       ATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGaagcgctagat                    >  SRR4302540.7070819/1‑83 (MQ=60)

                                                                       ATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTTCCATGGTAT                    >  SRR4302540.5549375/1‑94 (MQ=60)

                                                                       ATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTTCCATGGTAT                    >  SRR4302540.4117260/1‑94 (MQ=60)

                                                                       ATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTTCCATGGTAT                    <  SRR4302540.4089271/94‑1 (MQ=60)

                                                                        TCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTTCCATGGCATA                   <  SRR4302540.5932538/94‑1 (MQ=60)

                                                                        GCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTTCCATGGTATA                   <  SRR4302540.8316867/94‑1 (MQ=60)

                                                                          GTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTTCCATGGTATAAC                 >  SRR4302540.7698473/1‑94 (MQ=60)

                                                                           TTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTTCCATGGTATAACA                <  SRR4302540.9480107/94‑1 (MQ=60)

                                                                            TGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTTCCATGGTATAACAT               <  SRR4302540.2595680/94‑1 (MQ=60)

                                                                            TGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTTCCATGGTATAACAT               <  SRR4302540.2595679/94‑1 (MQ=60)

                                                                               GAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTTCCATGGTATAACATTTT            <  SRR4302540.5155550/94‑1 (MQ=60)

                                                                               CAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTTCCATGGTATAACATTTT            <  SRR4302540.9737362/94‑1 (MQ=60)

                                                                                AGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTTCCATGGTATAACATTTTG           >  SRR4302540.4969957/1‑94 (MQ=60)

                                                                                AGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTTCCATGGTATAACATTTTG           >  SRR4302540.7013598/1‑94 (MQ=60)

                                                                                AGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTTACATGGTATAACATTTTG           >  SRR4302540.6197078/1‑94 (MQ=60)

                                                                                 GAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTTCCATGGTATAACATTTTGT          >  SRR4302540.72007/1‑94 (MQ=60)

                                                                                 GAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTTCCATGGTATAACATTTTGT          >  SRR4302540.2312638/1‑94 (MQ=60)

                                                                                  AGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTTCCATGGTATAACATTTTGTA         <  SRR4302540.4120956/94‑1 (MQ=60)

                                                                                   GCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTTCCATGGTATAACATTTTGTAA        <  SRR4302540.1149712/94‑1 (MQ=60)

                                                                                   GCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTTCCATGGTATAACATTTTGTAA        <  SRR4302540.6749407/94‑1 (MQ=60)

                                                                                    CGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTTCCATGGTATAACATTTTGTAAA       <  SRR4302540.4630230/94‑1 (MQ=60)

                                                                                    CGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTTCCATGGTATAACATTTTGTAAA       <  SRR4302540.386890/94‑1 (MQ=60)

                                                                                     GGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTTCCATGGTATAACATTTTGTAAAT      <  SRR4302540.4418978/94‑1 (MQ=60)

                                                                                      GGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTTCCATGGTATAACATTTTGTAAATT     <  SRR4302540.5600778/94‑1 (MQ=60)

                                                                                       GCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTTCCATGGTATAACATTTTGTAAATTA    <  SRR4302540.1624974/94‑1 (MQ=60)

                                                                                       GCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTTCCATGGTATAACATTTTGTAAATTA    >  SRR4302540.6886914/1‑94 (MQ=60)

                                                                                       GCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTTCCATGGTATAACATTTTGTAAATTA    <  SRR4302540.606623/94‑1 (MQ=60)

                                                                                        CGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTTCCATGGTATAACATTTTGTAAATTAA   >  SRR4302540.5909008/1‑94 (MQ=60)

                                                                                         GTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTTCCATGGTATAACATTTTGTAAATTAAT  <  SRR4302540.7194750/94‑1 (MQ=60)

                                                                                         GTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTTCCATGGTATAACATTTTGTAAATTAAT  <  SRR4302540.4915812/94‑1 (MQ=60)

                                                                                         GTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTTCCATGGTATAACATTTTGTAAATTAAT  >  SRR4302540.2201322/1‑94 (MQ=60)

                                                                                         GTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTTCCATGGTATAACATTTTGTAAATTAAT  <  SRR4302540.9018432/94‑1 (MQ=60)

                                                                                         GTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTTCCATGGTATAACATTTTGTAAATTAAT  >  SRR4302540.8974687/1‑94 (MQ=60)

                                                                                         GTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTTCCATGGTATAACATTTTGTAAATTAAT  >  SRR4302540.6247537/1‑94 (MQ=60)

TTACCTGACAGTAACGGGAGAACAACAAGGAAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCATGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTTCCATGGTATAACATTTTGTAAATTAAT  >  NC_000913/3579508‑3579690

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 17 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`