Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1624 |
250.6 |
12620048 |
98.0% |
12367647 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,579,597 |
A→G |
H35R (CAT→CGT) |
yhhZ → |
hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,579,597 | 0 | A | G | 100.0%
| 229.4
/ NA
| 72 | H35R (CAT→CGT) | yhhZ | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (34/38); total (34/38) |
TTTACCTGACAGTAACGGGAGAACAACAAGGAAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCATGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTTCCATGGTATAACATTTTGTA > NC_000913/3579507‑3579683
|
tttACCTGACAGTAACGGGAGAACAACAAGGAAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTg > 2:3134789/1‑93 (MQ=255)
tACCTGACAGTAACGGGAGAACAACAAGGAAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAg < 2:887241/93‑1 (MQ=255)
aCCTGACAGTAACGGGAGAACAACAAGGAAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAgg > 2:5662093/1‑93 (MQ=255)
ccTGACAGTAACGGGAGAACAACAAGGAAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGa < 1:3776724/93‑1 (MQ=255)
cTGACAGTAACGGGAGAACAACAAGGAAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGAt > 2:1434124/1‑93 (MQ=255)
tGACAGTAACGGGAGAACAACAAGGAAGCATCTCCGCAGGTTGTGAGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATg > 1:4086089/1‑93 (MQ=255)
gACAGTAACGGGAGAACAACAAGGAAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGa < 2:5794697/93‑1 (MQ=255)
aGTAACGGGAGAACAACAAGGAAGCATCTCCGCGGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAat > 2:5247131/1‑93 (MQ=255)
aGTAACGGGAGAACAACAAGGAAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAat > 2:4127485/1‑93 (MQ=255)
gTAACGGGAGAACAACAAGGAAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAata > 2:3625227/1‑93 (MQ=255)
gTAACGGGAGAACAACAAGGAAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAata > 1:3125850/1‑93 (MQ=255)
aCGGGAGAACAACAAGGAAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATAttt > 1:2709619/1‑93 (MQ=255)
cGGGAGAACAACAAGGAAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTa > 2:423510/1‑93 (MQ=255)
cGGGAGAACAACAAGGAAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTa < 2:3249802/93‑1 (MQ=255)
ggAGAACAACAAGGAAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACa > 1:2625711/1‑93 (MQ=255)
ggAGAACAACAAGGAAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACa < 2:1673912/93‑1 (MQ=255)
gagaACAACAAGGAAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACAt < 2:1829490/93‑1 (MQ=255)
gaACAACAAGGAAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATtc > 1:4646245/1‑93 (MQ=255)
gaACAACAAGGAAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATtc < 1:1570877/93‑1 (MQ=255)
acaacaAGGAAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATtctc > 2:3727605/1‑93 (MQ=255)
caacaaGGAAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCa < 2:4707926/93‑1 (MQ=255)
caacaaGGAAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCa < 1:84890/93‑1 (MQ=255)
acaaGGAAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCAct > 1:1673850/1‑93 (MQ=255)
aaGGAAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCActct > 2:2152631/1‑93 (MQ=255)
aaGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTaaa < 1:6011878/93‑1 (MQ=255)
gCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCATTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAaata > 1:1579267/1‑93 (MQ=255)
cATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAaataa < 1:2424093/93‑1 (MQ=255)
cATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAaataa < 2:5056989/93‑1 (MQ=255)
aTCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAaataat < 1:86823/93‑1 (MQ=255)
tctcCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAataata > 1:5183588/1‑93 (MQ=255)
tctcCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAataata < 2:4192910/93‑1 (MQ=255)
tctcCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAataata > 2:5366199/1‑93 (MQ=255)
tctcCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAataata > 2:4279743/1‑93 (MQ=255)
tctcCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAataata < 2:4742359/93‑1 (MQ=255)
gCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATtaat > 1:6024882/1‑93 (MQ=255)
gCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATtaat < 1:5071368/93‑1 (MQ=255)
cAGGTTGTGTGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATtaata < 1:2430836/93‑1 (MQ=255)
cAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATtaata < 2:2016000/93‑1 (MQ=255)
gTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAataata > 1:5386260/1‑93 (MQ=255)
gTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAataata > 2:1320165/1‑93 (MQ=255)
ttGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATAc > 2:1999954/1‑93 (MQ=255)
ttGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATAc < 2:3611851/93‑1 (MQ=255)
gtgGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACgg > 1:3943824/1‑93 (MQ=255)
gtgGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACgg < 2:3248184/93‑1 (MQ=255)
tgGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACggg < 1:4283022/93‑1 (MQ=255)
gACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCt < 2:3094308/93‑1 (MQ=255)
tCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGt < 1:5508342/93‑1 (MQ=255)
tCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGt < 2:739957/93‑1 (MQ=255)
gAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTca > 2:5675177/1‑93 (MQ=255)
aGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTcac < 2:4981057/93‑1 (MQ=255)
gTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTcaca < 1:3867737/93‑1 (MQ=255)
tCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAg > 2:345408/1‑93 (MQ=255)
cTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGt < 1:5518772/93‑1 (MQ=255)
tACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGtt < 2:6201627/93‑1 (MQ=255)
cAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTTcc < 2:2047373/93‑1 (MQ=255)
ggTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTTCCAt > 1:2448802/1‑93 (MQ=255)
ggTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTTCCAt < 1:5047185/93‑1 (MQ=255)
ggTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTTCCAt < 2:4421785/93‑1 (MQ=255)
gTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTTCCATg < 1:904706/93‑1 (MQ=255)
gTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTTCCATg < 1:1763775/93‑1 (MQ=255)
aaTCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTTCCATGGt > 2:5738246/1‑93 (MQ=255)
aTCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTTCCATGGta > 1:4155059/1‑93 (MQ=255)
aTCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTTCCATGGta > 2:1250955/1‑93 (MQ=255)
tCGTTGGCAGAGCGGGCGTGAGGATGAAGTATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTTCCATGGtat < 2:5233534/93‑1 (MQ=255)
cGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTTCCATGGtata < 1:2161775/93‑1 (MQ=255)
ttGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTTCCATGGTATAAc > 1:4594219/1‑93 (MQ=255)
gCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTTCCATGGTATAACAtt > 1:6155047/1‑93 (MQ=255)
agagCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTTCCATGGTATAACAtttt < 1:994653/93‑1 (MQ=255)
gagCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTTCCATGGTATAACATTTTg > 2:2166870/1‑93 (MQ=255)
gagCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTTCAATGGTATAACATTTTg > 2:2929819/1‑93 (MQ=255)
gCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTTCCATGGTATAACATTTTGTa < 2:5537464/93‑1 (MQ=255)
gCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTTCCATGGTATAACATTTTGTa < 2:4814512/93‑1 (MQ=255)
|
TTTACCTGACAGTAACGGGAGAACAACAAGGAAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCATGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTTCCATGGTATAACATTTTGTA > NC_000913/3579507‑3579683
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GTTTACCTGACAGTAACGGGAGAACAACAAGGAAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCATGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTTCCATGGTATAACATTTTG > NC_000913/3579506‑3579681
|
GTTTACCTGACAGTAACGGGAGAACAACAAGGAAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTG < SRR4302533.5823466/94‑1 (MQ=60)
CCTGACAGTAACGGGAGAACAACAAGGAAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGAT < SRR4302533.3799871/94‑1 (MQ=60)
CTGACAGTAACGGGAGAACAACAAGGAAGCATCTCCGCAGGTTGTGAGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATG > SRR4302533.4110962/1‑94 (MQ=60)
AGTAACGGGAGAACAACAAGGAAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATA > SRR4302533.3145060/1‑94 (MQ=60)
AACGGGAGAACAACAAGGAAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTT > SRR4302533.2726249/1‑94 (MQ=60)
GGGAGAACAACAAGGAAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACA > SRR4302533.2641823/1‑94 (MQ=60)
AGAACAACAAGGAAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTC > SRR4302533.4674402/1‑94 (MQ=60)
GAACAACAAGGAAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCT < SRR4302533.1580340/94‑1 (MQ=60)
CAACAAGGAAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCAC < SRR4302533.85433/94‑1 (MQ=60)
AACAAGGAAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACT > SRR4302533.1683967/1‑94 (MQ=60)
AAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAAT < SRR4302533.6048299/94‑1 (MQ=60)
AGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCATTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATA > SRR4302533.1588779/1‑94 (MQ=60)
CATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAAT < SRR4302533.2439057/94‑1 (MQ=60)
ATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATA < SRR4302533.87382/94‑1 (MQ=60)
ATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATA > SRR4302533.5214881/1‑94 (MQ=60)
CGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAAT > SRR4302533.6061391/1‑94 (MQ=60)
GCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATA < SRR4302533.5102022/94‑1 (MQ=60)
CAGGTTGTGTGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAA < SRR4302533.2445861/94‑1 (MQ=60)
GGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATA > SRR4302533.5418621/1‑94 (MQ=60)
TGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGG > SRR4302533.3967882/1‑94 (MQ=60)
TGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGG < SRR4302533.4308762/94‑1 (MQ=60)
TCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTT < SRR4302533.5541592/94‑1 (MQ=60)
GTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAG < SRR4302533.3891347/94‑1 (MQ=60)
CTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTT < SRR4302533.5552095/94‑1 (MQ=60)
AGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTTCCAT > SRR4302533.2463917/1‑94 (MQ=60)
GGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTTCCATG < SRR4302533.5077715/94‑1 (MQ=60)
GTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTTCCATGG < SRR4302533.910010/94‑1 (MQ=60)
GTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTTCCATGG < SRR4302533.1774515/94‑1 (MQ=60)
AATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTTCCATGGTA > SRR4302533.4180238/1‑94 (MQ=60)
CGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTTCCATGGTATAA < SRR4302533.2175080/94‑1 (MQ=60)
GTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTTCCATGGTATAAC > SRR4302533.4622047/1‑94 (MQ=60)
GGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTTCCATGGTATAACATT > SRR4302533.6192078/1‑94 (MQ=60)
AGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTTCCATGGTATAACATTTTG < SRR4302533.1000465/94‑1 (MQ=60)
|
GTTTACCTGACAGTAACGGGAGAACAACAAGGAAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCATGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTTCCATGGTATAACATTTTG > NC_000913/3579506‑3579681
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
