Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 1548 369.5 20095359 96.9% 19472402 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,597,539 T→C intergenic (‑250/+21) b3460 ← / ← rpoH LivJ/sigma(32) factor

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,597,5390TC99.8% 1735.4 / NA 537intergenic (‑250/+21)b3460/rpoHLivJ/sigma(32) factor
Reads supporting (aligned to +/- strand):  ref base T (0/0);  major base C (236/300);  minor base G (1/0);  total (237/300)
Fisher's exact test for biased strand distribution p-value = 4.41e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 553 total aligned reads displayed.

ACAATCTGCGTGGGGATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGTTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCGTACACGCTCAGCGGA  >  NC_000913/3597449‑3597628
                                                                                          |                                                                                         
 cAATCTGCGTGGGGATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGctct                                                                                        <  2:4719649/93‑1 (MQ=255)
  aaTCTGCGTGGGGATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGTGGCCCAAAAAACAAAAACCCCGTACTTTCATCCAGGGCtctc                                                                                       >  2:8966961/1‑93 (MQ=255)
  aaTCTGCGTGGGGATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCtctc                                                                                       <  2:5890640/93‑1 (MQ=255)
  aaTCTGCGTGGGGATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCtctc                                                                                       <  1:5777259/93‑1 (MQ=255)
   aTCTGCGTGGGGATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGctctct                                                                                      <  2:5287356/93‑1 (MQ=255)
     cTGCGTGGGGATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGc                                                                                    <  1:9988146/93‑1 (MQ=255)
      tGCGTGGGGATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCt                                                                                   <  2:761290/93‑1 (MQ=255)
      tGCGTGGGGATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCt                                                                                   >  2:3235831/1‑93 (MQ=255)
       gCGTGGGGATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCtt                                                                                  <  1:8252719/93‑1 (MQ=255)
         gTGGGGATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTaa                                                                                >  1:3355655/1‑93 (MQ=255)
          tGGGGATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCCGGGCTCTCTGCTTAAt                                                                               >  2:980630/1‑93 (MQ=255)
          tGGGGATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAAt                                                                               >  1:8889807/1‑93 (MQ=255)
           ggggATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATa                                                                              <  2:3801416/93‑1 (MQ=255)
            gggATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAg                                                                             <  1:6435841/93‑1 (MQ=255)
              gATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCg                                                                           <  1:7480137/93‑1 (MQ=255)
               aTTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCgg                                                                          <  2:7736844/93‑1 (MQ=255)
                ttGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGa                                                                         >  2:419935/1‑93 (MQ=255)
                  ggCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGaaa                                                                       <  1:6952631/93‑1 (MQ=255)
                   gCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAAt                                                                      >  1:808577/1‑93 (MQ=255)
                   gCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAAt                                                                      <  2:5129454/93‑1 (MQ=255)
                   gCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAAt                                                                      >  2:4486761/1‑93 (MQ=255)
                     gTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTa                                                                    >  2:6834711/1‑93 (MQ=255)
                      ttttGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTAc                                                                   >  2:4964472/1‑93 (MQ=255)
                         tGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCt                                                                <  2:4087881/93‑1 (MQ=255)
                          gCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCtt                                                               >  1:5983963/1‑93 (MQ=255)
                           gcGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTc                                                              <  1:6262026/92‑1 (MQ=255)
                           ccGGAGGGGAAATTGATTATTACAGAGGCCCAAGAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTc                                                              <  1:9705518/93‑1 (MQ=255)
                           ccGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTc                                                              >  2:9642752/1‑93 (MQ=255)
                            cGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCa                                                             <  2:9429481/93‑1 (MQ=255)
                            cGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCAGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCa                                                             >  2:275394/1‑93 (MQ=255)
                             ggAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCaa                                                            <  1:6354944/93‑1 (MQ=255)
                             ggAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCaa                                                            >  1:1097136/1‑93 (MQ=255)
                             ggAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCaa                                                            <  2:1892754/93‑1 (MQ=255)
                              gAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAAt                                                           <  2:8651072/93‑1 (MQ=255)
                              gAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAAt                                                           <  1:656859/93‑1 (MQ=255)
                               aGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATg                                                          >  1:2302826/1‑93 (MQ=255)
                                 gggAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGgc                                                        <  2:3394640/93‑1 (MQ=255)
                                 gggAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGgc                                                        >  1:4412460/1‑93 (MQ=255)
                                  ggAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGgca                                                       <  1:607341/93‑1 (MQ=255)
                                    aaaTTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGgcagc                                                     >  2:4600733/1‑93 (MQ=255)
                                      aTTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCAc                                                   <  2:8211449/93‑1 (MQ=255)
                                      aTTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCAc                                                   <  2:6639310/93‑1 (MQ=255)
                                      aTTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGCCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCAc                                                   <  2:645564/93‑1 (MQ=255)
                                       ttGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACg                                                  >  1:9246823/1‑93 (MQ=255)
                                          attattACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCaa                                               <  2:6288950/93‑1 (MQ=255)
                                           ttattaCAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAAt                                              >  2:2465280/1‑93 (MQ=255)
                                           ttattaCAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAAt                                              <  2:8815475/93‑1 (MQ=255)
                                            tattaCAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGCGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCaagt                                             >  2:5739650/1‑91 (MQ=255)
                                             attaCAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAAttt                                            <  2:1587987/93‑1 (MQ=255)
                                              ttaCAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAAtttt                                           >  1:9126197/1‑93 (MQ=255)
                                              ttaCAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAAtttt                                           <  1:7107558/93‑1 (MQ=255)
                                              ttaCAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAAtttt                                           <  1:4724507/93‑1 (MQ=255)
                                                 cAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTc                                        >  1:9504129/1‑93 (MQ=255)
                                                 cAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTc                                        <  1:3533163/93‑1 (MQ=255)
                                                  agagGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCa                                       <  1:1963002/93‑1 (MQ=255)
                                                   ggggCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGACAGCACGCAATTTTTTCAt                                      >  2:7026325/3‑93 (MQ=255)
                                                   gagGCCCAAAAAACAAAAACCCCGTACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCAt                                      <  2:2606994/93‑1 (MQ=255)
                                                   gagGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCAt                                      <  1:3008886/93‑1 (MQ=255)
                                                   gagGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCAt                                      <  2:1299895/93‑1 (MQ=255)
                                                       cccAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATcgcg                                  >  1:5156237/1‑93 (MQ=255)
                                                         cAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGtt                                <  2:2904240/93‑1 (MQ=255)
                                                          aaaaaaCAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTc                               <  2:3122171/93‑1 (MQ=255)
                                                          aaaaaaCAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTc                               >  1:8357674/1‑93 (MQ=255)
                                                           aaaaacaaaaacCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCt                              <  1:1868813/93‑1 (MQ=255)
                                                            aaaacaaaaacCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCtt                             >  2:481346/1‑93 (MQ=255)
                                                            aaaacaaaaacCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCtt                             <  1:1646944/93‑1 (MQ=255)
                                                            aaaacaaaaacCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCtt                             >  1:2835764/1‑93 (MQ=255)
                                                            aaaacaaaaacCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCtt                             <  2:8112835/93‑1 (MQ=255)
                                                             aaacaaaaacCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCttt                            <  2:3614672/93‑1 (MQ=255)
                                                               acaaaaacCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTc                          <  1:9855635/93‑1 (MQ=255)
                                                                caaaaacCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTcc                         >  1:4465451/1‑93 (MQ=255)
                                                                  aaaacCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAg                       >  1:4212147/1‑93 (MQ=255)
                                                                  aaaacCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAg                       <  2:7989109/93‑1 (MQ=255)
                                                                  aaaacCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAg                       <  2:2304574/93‑1 (MQ=255)
                                                                    aacCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCt                     <  2:6071988/93‑1 (MQ=255)
                                                                    aacCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCt                     >  2:3760748/1‑93 (MQ=255)
                                                                    aacCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCt                     <  2:1244886/93‑1 (MQ=255)
                                                                    aacCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCt                     <  2:1667923/93‑1 (MQ=255)
                                                                     acCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTg                    <  1:1243760/93‑1 (MQ=255)
                                                                      ccccGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTgg                   <  2:8345635/93‑1 (MQ=255)
                                                                       cccGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGc                  >  1:10019604/1‑93 (MQ=255)
                                                                       cccGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGc                  >  1:9390196/1‑93 (MQ=255)
                                                                       cccGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGc                  >  1:8586374/1‑93 (MQ=255)
                                                                       cccGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGc                  >  1:2480347/1‑93 (MQ=255)
                                                                         cGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCGt                >  2:7225004/1‑93 (MQ=255)
                                                                          ggACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCGTa               >  1:3662649/1‑93 (MQ=255)
                                                                          ggACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCGTa               <  1:4572344/93‑1 (MQ=255)
                                                                           gACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCGTac              >  1:327701/1‑93 (MQ=255)
                                                                           gACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCGTac              <  1:5605203/93‑1 (MQ=255)
                                                                            aCTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCGTacc             >  1:7979160/1‑92 (MQ=255)
                                                                                tcATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCGTACACGCt         >  1:6777253/1‑93 (MQ=255)
                                                                                 cATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCGTACACGCTc        <  2:5452380/93‑1 (MQ=255)
                                                                                  aTCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCGTACACGCTCa       <  1:2222402/93‑1 (MQ=255)
                                                                                   tCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCGTACACGCTCAg      <  1:255678/93‑1 (MQ=255)
                                                                                   tCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCGTACACGCTCAg      >  1:7300484/1‑93 (MQ=255)
                                                                                   tCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCGTACACGCTCAg      >  2:37229/1‑93 (MQ=255)
                                                                                    ccAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCGTACACGCTCAGc     >  1:4905735/1‑93 (MQ=255)
                                                                                    ccAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCGTACACGCTCAGc     <  2:9160590/93‑1 (MQ=255)
                                                                                     cAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCGTACACGCTCAGCg    <  1:3793914/93‑1 (MQ=255)
                                                                                       gggCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCGTACACGCTCAGCGGa  >  1:5324360/1‑93 (MQ=255)
                                                                                          |                                                                                         
ACAATCTGCGTGGGGATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGTTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCGTACACGCTCAGCGGA  >  NC_000913/3597449‑3597628

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output Only 200 of 315 total aligned reads displayed.
TTAACAATCTGCGTGGGGATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGTTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCGTACACGCTCAGCGGAAACG  >  NC_000913/3597446‑3597632
                                                                                             |                                                                                             
TTAACAATCTGCGTGGGGATTGGGGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGC                                                                                               >  SRR4302540.5998507/1‑94 (MQ=60)
TTAACAATCTGCGTGGGGATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGC                                                                                               >  SRR4302540.9283929/1‑94 (MQ=60)
TTAACAATCTGCGTGGGGATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGC                                                                                               <  SRR4302540.1967257/94‑1 (MQ=60)
TTAACAATCTGCGTGGGGATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGC                                                                                               >  SRR4302540.8651233/1‑94 (MQ=60)
TTAACAATCTGCGTGGGGATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGC                                                                                               <  SRR4302540.8397418/94‑1 (MQ=60)
TTAACAATCTGCGTGGGGATTGGCGTTTTGCCGGAGGGGAAATTGATTAATACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGC                                                                                               >  SRR4302540.58859/1‑94 (MQ=60)
 TAACAATCTGCGTGGGGATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCT                                                                                              >  SRR4302540.6147849/1‑94 (MQ=60)
  AACAATCTGCGTGGGGATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTC                                                                                             <  SRR4302540.9677997/94‑1 (MQ=60)
  AACAATCTGCGTGGGGATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTC                                                                                             >  SRR4302540.2272651/1‑94 (MQ=60)
  AACAATCTGCGTGGGGATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTC                                                                                             <  SRR4302540.4996647/94‑1 (MQ=60)
  AACAATCTGCGTGGGGATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTC                                                                                             <  SRR4302540.400774/94‑1 (MQ=60)
   ACAATCTGCGTGGGGATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCT                                                                                            <  SRR4302540.8546335/94‑1 (MQ=60)
   ACAATCTGCGTGGGGATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCT                                                                                            <  SRR4302540.1397834/94‑1 (MQ=60)
    TAATCTGCGTGGGGATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTC                                                                                           >  SRR4302540.9539459/1‑94 (MQ=60)
     AATCTGCGTGGGGATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCT                                                                                          >  SRR4302540.5036049/1‑94 (MQ=60)
     AATCTGCGTGGGGATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCT                                                                                          <  SRR4302540.536074/94‑1 (MQ=60)
     AATCTGCGTGGGGATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCT                                                                                          >  SRR4302540.6637221/1‑94 (MQ=60)
       TCTGCGTGGGGATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGC                                                                                        >  SRR4302540.7287928/1‑94 (MQ=60)
        CTGCGTGGGGATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCT                                                                                       >  SRR4302540.3204772/1‑94 (MQ=60)
        CTGCGTGGGGATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCT                                                                                       >  SRR4302540.9516832/1‑94 (MQ=60)
        CTGCGTGGGGATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCT                                                                                       <  SRR4302540.10104576/94‑1 (MQ=60)
         TGCGTGGGGATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTT                                                                                      >  SRR4302540.366686/1‑94 (MQ=60)
         TGCGTGGGGATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTT                                                                                      <  SRR4302540.9001671/94‑1 (MQ=60)
           GGTGGGGATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAA                                                                                    <  SRR4302540.5696646/94‑1 (MQ=60)
           CGTGGGGATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAA                                                                                    >  SRR4302540.3392428/1‑94 (MQ=60)
            GTGGGGATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAAT                                                                                   >  SRR4302540.8992720/1‑94 (MQ=60)
            GTGGGGATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAAT                                                                                   <  SRR4302540.2029393/94‑1 (MQ=60)
            GTGGGGATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAAT                                                                                   <  SRR4302540.8100465/94‑1 (MQ=60)
            GTGGGGATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAAT                                                                                   <  SRR4302540.8523655/94‑1 (MQ=60)
            GTGGGGATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTATCATCCAGGGCTCTCTGCTTAAT                                                                                   <  SRR4302540.1815101/94‑1 (MQ=60)
             TGGGGATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATA                                                                                  >  SRR4302540.3579190/1‑94 (MQ=60)
              GGGGATTGGGGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAACCAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAG                                                                                 <  SRR4302540.3806760/94‑1 (MQ=60)
              GGGGATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAG                                                                                 <  SRR4302540.1841042/94‑1 (MQ=60)
               GGGATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGC                                                                                <  SRR4302540.6507475/94‑1 (MQ=60)
               GGGATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGC                                                                                >  SRR4302540.5376933/1‑94 (MQ=60)
                GGATTGGCGTTTTGCCGTAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCG                                                                               >  SRR4302540.6737208/1‑94 (MQ=60)
                 GATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGG                                                                              <  SRR4302540.7563618/94‑1 (MQ=60)
                   TTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAA                                                                            >  SRR4302540.1939836/1‑94 (MQ=60)
                     GGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAAT                                                                          <  SRR4302540.5909124/94‑1 (MQ=60)
                     GGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAAT                                                                          >  SRR4302540.4649557/1‑94 (MQ=60)
                     GGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAAT                                                                          >  SRR4302540.817168/1‑94 (MQ=60)
                     GGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAAT                                                                          <  SRR4302540.7029988/94‑1 (MQ=60)
                      GCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATT                                                                         <  SRR4302540.968321/94‑1 (MQ=60)
                       CGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTA                                                                        <  SRR4302540.7545593/94‑1 (MQ=60)
                        tgTTTGCGGGAGGGGAAATTGATTATTACAGAGGCCAAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTAC                                                                       <  SRR4302540.8767571/92‑1 (MQ=60)
                        GTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACATAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTAC                                                                       >  SRR4302540.160564/1‑94 (MQ=60)
                        GTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTAC                                                                       >  SRR4302540.9384689/1‑94 (MQ=60)
                        GTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTAC                                                                       >  SRR4302540.8029925/1‑94 (MQ=60)
                        GTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTAC                                                                       >  SRR4302540.160563/1‑94 (MQ=60)
                         TTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACG                                                                      <  SRR4302540.257400/94‑1 (MQ=60)
                               CGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAA                                                                >  SRR4302540.1108432/1‑94 (MQ=60)
                               CGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAA                                                                >  SRR4302540.843996/1‑94 (MQ=60)
                                GGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAAT                                                               <  SRR4302540.2360244/94‑1 (MQ=60)
                                GGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAAT                                                               <  SRR4302540.6425712/94‑1 (MQ=60)
                                 GAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATG                                                              <  SRR4302540.7378987/94‑1 (MQ=60)
                                 GAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATG                                                              >  SRR4302540.8342223/1‑94 (MQ=60)
                                 GAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATG                                                              >  SRR4302540.9330680/1‑94 (MQ=60)
                                 GAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATG                                                              <  SRR4302540.663866/94‑1 (MQ=60)
                                 GAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATG                                                              >  SRR4302540.2327605/1‑94 (MQ=60)
                                  AGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGG                                                             <  SRR4302540.6169137/94‑1 (MQ=60)
                                  AGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGG                                                             <  SRR4302540.4762448/94‑1 (MQ=60)
                                   GGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGC                                                            >  SRR4302540.4460285/1‑94 (MQ=60)
                                    GGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCA                                                           >  SRR4302540.699400/1‑94 (MQ=60)
                                    GGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCA                                                           <  SRR4302540.6802936/94‑1 (MQ=60)
                                     GGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAG                                                          <  SRR4302540.613836/94‑1 (MQ=60)
                                     GGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAG                                                          >  SRR4302540.9794573/1‑94 (MQ=60)
                                      GAAATTGATTATTACAGAGGCCCGCAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCAGCTTAATAGCGGAAATTACGCTTCAATGGCAGC                                                         <  SRR4302540.9086889/94‑1 (MQ=60)
                                       AAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCA                                                        <  SRR4302540.8706420/94‑1 (MQ=60)
                                        AATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCAC                                                       <  SRR4302540.1667650/94‑1 (MQ=60)
                                         ATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACG                                                      >  SRR4302540.9357538/1‑94 (MQ=60)
                                         ATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACG                                                      >  SRR4302540.4590078/1‑94 (MQ=60)
                                         ATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACG                                                      <  SRR4302540.10071556/94‑1 (MQ=60)
                                          TTGATTATTACAGCGGCCCCAACAGCAACAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGC                                                     <  SRR4302540.9076311/94‑1 (MQ=60)
                                           TGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCA                                                    >  SRR4302540.546443/1‑94 (MQ=60)
                                             ATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAAT                                                  >  SRR4302540.7493932/1‑94 (MQ=60)
                                              TTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATT                                                 <  SRR4302540.9300483/94‑1 (MQ=60)
                                               TATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTT                                                >  SRR4302540.7732403/1‑94 (MQ=60)
                                               TATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTT                                                <  SRR4302540.6140388/94‑1 (MQ=60)
                                                ATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTT                                               <  SRR4302540.7065342/94‑1 (MQ=60)
                                                ATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTT                                               >  SRR4302540.9235897/1‑94 (MQ=60)
                                                 TTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTT                                              >  SRR4302540.4836495/1‑94 (MQ=60)
                                                 TTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTT                                              <  SRR4302540.7186646/94‑1 (MQ=60)
                                                   ACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTC                                            >  SRR4302540.9616735/1‑94 (MQ=60)
                                                    CAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCA                                           <  SRR4302540.3571733/94‑1 (MQ=60)
                                                     AGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCAT                                          >  SRR4302540.7261523/1‑94 (MQ=60)
                                                     AGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCAT                                          <  SRR4302540.4270774/94‑1 (MQ=60)
                                                     AGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCAT                                          <  SRR4302540.1984328/94‑1 (MQ=60)
                                                      GAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATC                                         <  SRR4302540.3041995/94‑1 (MQ=60)
                                                       AGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGTCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCG                                        <  SRR4302540.4670089/94‑1 (MQ=60)
                                                       AGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCG                                        <  SRR4302540.225766/94‑1 (MQ=60)
                                                       AGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCG                                        <  SRR4302540.3356287/94‑1 (MQ=60)
                                                       AGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAA‑TTTTTCATCGC                                       >  SRR4302540.6435196/1‑94 (MQ=60)
                                                        GGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGC                                       >  SRR4302540.4497198/1‑94 (MQ=60)
                                                        GGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGC                                       <  SRR4302540.5115276/94‑1 (MQ=60)
                                                         GCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCG                                      <  SRR4302540.2678978/94‑1 (MQ=60)
                                                         GCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCG                                      >  SRR4302540.5282749/1‑94 (MQ=60)
                                                         GCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCG                                      >  SRR4302540.5212218/1‑94 (MQ=60)
                                                          CCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGT                                     <  SRR4302540.3024147/94‑1 (MQ=60)
                                                           CCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTT                                    >  SRR4302540.1182827/1‑94 (MQ=60)
                                                           CCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTT                                    >  SRR4302540.6577086/1‑94 (MQ=60)
                                                            CAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTC                                   <  SRR4302540.2575256/94‑1 (MQ=60)
                                                            CAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTC                                   >  SRR4302540.10090636/1‑94 (MQ=60)
                                                            CAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTC                                   >  SRR4302540.8454661/1‑94 (MQ=60)
                                                             AAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCT                                  >  SRR4302540.5859679/1‑94 (MQ=60)
                                                             AAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCT                                  >  SRR4302540.9594849/1‑94 (MQ=60)
                                                              AAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTT                                 <  SRR4302540.3858699/94‑1 (MQ=60)
                                                              AAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTT                                 >  SRR4302540.1701236/1‑94 (MQ=60)
                                                              AAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTT                                 <  SRR4302540.1889290/94‑1 (MQ=60)
                                                              AAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTT                                 >  SRR4302540.2866437/1‑94 (MQ=60)
                                                               AAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTT                                <  SRR4302540.6945448/94‑1 (MQ=60)
                                                               AAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTT                                >  SRR4302540.4499223/1‑94 (MQ=60)
                                                                AAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTT                               <  SRR4302540.6371765/94‑1 (MQ=60)
                                                                AAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTT                               <  SRR4302540.6371766/94‑1 (MQ=60)
                                                                  ACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCC                             <  SRR4302540.9970815/94‑1 (MQ=60)
                                                                  ACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCC                             <  SRR4302540.1151090/94‑1 (MQ=60)
                                                                  ACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCC                             <  SRR4302540.4590440/94‑1 (MQ=60)
                                                                  ACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCC                             <  SRR4302540.4736264/94‑1 (MQ=60)
                                                                   CAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCA                            <  SRR4302540.4524889/94‑1 (MQ=60)
                                                                   CAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCA                            <  SRR4302540.1014116/94‑1 (MQ=60)
                                                                   CAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCA                            <  SRR4302540.1161305/94‑1 (MQ=60)
                                                                   CAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCA                            <  SRR4302540.5633362/94‑1 (MQ=60)
                                                                    AAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGACATTACGCTTCAATGGCAGCACGCCATTTTTTtcttgcggttcttttcag                           >  SRR4302540.1896523/1‑76 (MQ=60)
                                                                    AAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAG                           >  SRR4302540.4258007/1‑94 (MQ=60)
                                                                      AAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCT                         <  SRR4302540.3786816/94‑1 (MQ=60)
                                                                      AAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCT                         <  SRR4302540.6219568/94‑1 (MQ=60)
                                                                      AAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCT                         <  SRR4302540.8104647/94‑1 (MQ=60)
                                                                      AAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCT                         >  SRR4302540.3416456/1‑94 (MQ=60)
                                                                       AACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTG                        <  SRR4302540.3519931/94‑1 (MQ=60)
                                                                        ACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGG                       <  SRR4302540.1256447/94‑1 (MQ=60)
                                                                         CCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGC                      <  SRR4302540.332444/94‑1 (MQ=60)
                                                                         CCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGC                      >  SRR4302540.10136217/1‑94 (MQ=60)
                                                                         CCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGC                      >  SRR4302540.2507066/1‑94 (MQ=60)
                                                                         CCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGC                      >  SRR4302540.6457550/1‑94 (MQ=60)
                                                                          CCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCG                     <  SRR4302540.8241714/94‑1 (MQ=60)
                                                                          CCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTCGCG                     >  SRR4302540.833388/1‑94 (MQ=60)
                                                                            CGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCGTA                   >  SRR4302540.3702737/1‑94 (MQ=60)
                                                                             GGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCGTAC                  >  SRR4302540.330982/1‑94 (MQ=60)
                                                                             GGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCGTAC                  <  SRR4302540.10137059/94‑1 (MQ=60)
                                                                              GACTCTCATCCGGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCACCCCGCACTTTTTTCATCGGGTTCTTTTCCAGCTGGCG‑ACAC                >  SRR4302540.8072107/1‑94 (MQ=60)
                                                                              GACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCGTACC                 >  SRR4302540.8072106/1‑94 (MQ=60)
                                                                              GACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCGTACA                 >  SRR4302540.375618/1‑94 (MQ=60)
                                                                               GCTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCGTACAC                <  SRR4302540.492229/94‑1 (MQ=60)
                                                                               GCTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCGTACAC                <  SRR4302540.6130732/94‑1 (MQ=60)
                                                                               ACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCGTACAC                <  SRR4302540.2789262/94‑1 (MQ=60)
                                                                               ACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCGTACAC                <  SRR4302540.2382298/94‑1 (MQ=60)
                                                                               ACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCGTACAC                <  SRR4302540.8366333/94‑1 (MQ=60)
                                                                               ACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCGTACAC                <  SRR4302540.10042058/94‑1 (MQ=60)
                                                                               ACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCGTACAC                <  SRR4302540.5519193/94‑1 (MQ=60)
                                                                               ACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCGTACAC                <  SRR4302540.5142120/94‑1 (MQ=60)
                                                                               ACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCGTACAC                <  SRR4302540.6843736/94‑1 (MQ=60)
                                                                                CTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCGTACACG               >  SRR4302540.3862800/1‑94 (MQ=60)
                                                                                CTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCGTACACG               >  SRR4302540.5803287/1‑94 (MQ=60)
                                                                                CTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCGTACACG               >  SRR4302540.5457140/1‑94 (MQ=60)
                                                                                 TCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCGTACACGC              <  SRR4302540.6268229/94‑1 (MQ=60)
                                                                                 TCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCGTACACGC              >  SRR4302540.7761026/1‑94 (MQ=60)
                                                                                    CATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCGTACACGCTCA           >  SRR4302540.7391116/1‑94 (MQ=60)
                                                                                    CATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCGTACACGCTCA           <  SRR4302540.9821191/94‑1 (MQ=60)
                                                                                    CATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCGTACACGCTCA           >  SRR4302540.7169982/1‑94 (MQ=60)
                                                                                     ATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCGTACACGCTCAG          <  SRR4302540.2246360/94‑1 (MQ=60)
                                                                                     ATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCGTACACGCTCAG          <  SRR4302540.6410730/94‑1 (MQ=60)
                                                                                     ATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCGTACACGCTCAG          >  SRR4302540.2172773/1‑94 (MQ=60)
                                                                                     ATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCGTACACGCTCAG          >  SRR4302540.9712653/1‑94 (MQ=60)
                                                                                      TCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCGTACACGCTCAGC         >  SRR4302540.316993/1‑94 (MQ=60)
                                                                                      TCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCGTACACGCTCAGC         <  SRR4302540.4502270/94‑1 (MQ=60)
                                                                                      TCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCGTACACGCTCAGC         <  SRR4302540.258156/94‑1 (MQ=60)
                                                                                      TCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCGTACACGCTCAGC         >  SRR4302540.6429740/1‑94 (MQ=60)
                                                                                      TCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCGTACACGCTCAGC         >  SRR4302540.4958535/1‑94 (MQ=60)
                                                                                      TCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCGTACACGCTCAGC         <  SRR4302540.6900220/94‑1 (MQ=60)
                                                                                       CCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATTGCGTTCTTTTCCAGCTGGCGTACACGCTCAGCG        >  SRR4302540.9827325/1‑94 (MQ=60)
                                                                                       CCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCGTACACGCTCAGCG        >  SRR4302540.1992451/1‑94 (MQ=60)
                                                                                       CCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCGTACACGCTCAGCG        >  SRR4302540.287721/1‑94 (MQ=60)
                                                                                       CCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCGTACACGCTCAGCG        >  SRR4302540.5812376/1‑94 (MQ=60)
                                                                                       CCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCGTACACGCTCAGCG        <  SRR4302540.6020320/94‑1 (MQ=60)
                                                                                        CAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCGTACACGCTCAGCGG       >  SRR4302540.94649/1‑94 (MQ=60)
                                                                                        CAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCGTACACGCTCAGCGG       <  SRR4302540.3835268/94‑1 (MQ=60)
                                                                                        CAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCGTACACGCTCAGCGG       >  SRR4302540.2505579/1‑94 (MQ=60)
                                                                                        CAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCGTACACGCTCAGCGA       >  SRR4302540.3092885/1‑94 (MQ=60)
                                                                                         AGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCGTACACGCTCAGCGGA      >  SRR4302540.4279166/1‑94 (MQ=60)
                                                                                         AGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCGTACACGCTCAGCGGA      >  SRR4302540.9362051/1‑94 (MQ=60)
                                                                                         AGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCGTACACGCTCAGCGGA      <  SRR4302540.8563865/94‑1 (MQ=60)
                                                                                         AGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCGTACACGCTCAGCGGA      >  SRR4302540.3477310/1‑94 (MQ=60)
                                                                                          GGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCGTACACGCTCAGCGGAA     >  SRR4302540.4932258/1‑94 (MQ=60)
                                                                                          GGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCGTACACGCTCAGCGGAA     >  SRR4302540.4147541/1‑94 (MQ=60)
                                                                                          GGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCGTACACGCTCAGCGGAA     >  SRR4302540.6408899/1‑94 (MQ=60)
                                                                                           GGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCGTACACGCTCAGCGGAAA    <  SRR4302540.3987130/94‑1 (MQ=60)
                                                                                            GCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCGTACACGCTCAGCGGAAAC   <  SRR4302540.5671799/94‑1 (MQ=60)
                                                                                            GCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCGTACACGCTCAGCGGAAAC   <  SRR4302540.1247074/94‑1 (MQ=60)
                                                                                            GCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCGTACACGCTCAGCGGAAAC   >  SRR4302540.563255/1‑94 (MQ=60)
                                                                                            GCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCGTACACGCTCAGCGGAAAC   <  SRR4302540.9756474/94‑1 (MQ=60)
                                                                                            GCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCGTACACGCTCAGCGGAAAC   <  SRR4302540.2671729/94‑1 (MQ=60)
                                                                                            GCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCGTACACGCTCAGCGGAAAC   <  SRR4302540.8813812/94‑1 (MQ=60)
                                                                                            GCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCGTACACGCTCAGCGGAAAC   <  SRR4302540.2761570/94‑1 (MQ=60)
                                                                                            GCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCGTACACGCTCAGCGGAAAC   <  SRR4302540.8678246/94‑1 (MQ=60)
                                                                                            GCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCGTACACGCTCAGCGGAAAC   <  SRR4302540.657227/94‑1 (MQ=60)
                                                                                            GCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCGTACACGCTCAGCGGAAAC   <  SRR4302540.4318017/94‑1 (MQ=60)
                                                                                            GCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCGTACACGCTCAGCGGAAAC   <  SRR4302540.830380/94‑1 (MQ=60)
                                                                                            GCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCGTACACGCTCAGCGGAAAC   <  SRR4302540.6866394/94‑1 (MQ=60)
                                                                                             CTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCGTACACGCTCAGCGGAAACG  <  SRR4302540.2286568/94‑1 (MQ=60)
                                                                                             CTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCGTACACGCTCAGCGGAAACG  <  SRR4302540.6128565/94‑1 (MQ=60)
                                                                                             CTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGAAGCACGCAATTTTTTCCTCGCGTTCTTTTCCAGCTGGCGTACACGCTCAGCGGAAACG  >  SRR4302540.7103744/1‑94 (MQ=60)
                                                                                             |                                                                                             
TTAACAATCTGCGTGGGGATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGTTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCGTACACGCTCAGCGGAAACG  >  NC_000913/3597446‑3597632

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑