Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1624 |
250.6 |
12620048 |
98.0% |
12367647 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,597,539 |
T→C |
intergenic (‑250/+21) |
b3460 ← / ← rpoH |
LivJ/sigma(32) factor |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,597,539 | 0 | T | C | 99.2%
| 809.1
/ NA
| 252 | intergenic (‑250/+21) | b3460/rpoH | LivJ/sigma(32) factor |
| Reads supporting (aligned to +/- strand): ref base T (0/0); major base C (123/127); minor base A (2/0); total (125/127) |
| Fisher's exact test for biased strand distribution p-value = 2.45e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 258 total aligned reads displayed.
ACAATCTGCGTGGGGATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGTTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCGTACACGCTCAGCGGA > NC_000913/3597449‑3597628
|
aCAATCTGCGTGGGGATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCtc < 2:2057510/93‑1 (MQ=255)
cAATCTGCGTGGGGATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGctct > 2:3615654/1‑93 (MQ=255)
aTCTGCGTGGGGATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGctctct < 1:2742620/93‑1 (MQ=255)
tCTGCGTGGGGATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTg > 1:4505819/1‑93 (MQ=255)
cTGCGTGGGGATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGc < 1:4950145/93‑1 (MQ=255)
cTGCGTGGGGATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGc < 2:1560423/93‑1 (MQ=255)
tGCGTGGGGATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCt < 2:4868513/93‑1 (MQ=255)
tGCGTGGGGATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCt > 2:3439112/1‑93 (MQ=255)
gCGTGGGGATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCtt > 1:3270672/1‑93 (MQ=255)
gTGGGGATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTaa > 1:4823783/1‑93 (MQ=255)
gTGGGGATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTaa > 2:3468043/1‑93 (MQ=255)
ggggATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATa < 1:5811114/93‑1 (MQ=255)
ggggATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATa > 1:3162354/1‑93 (MQ=255)
ggggATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATa > 2:367582/1‑93 (MQ=255)
gggATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAg < 1:6186524/93‑1 (MQ=255)
gggATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAg < 2:5730826/93‑1 (MQ=255)
ggATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGc < 1:4743588/93‑1 (MQ=255)
ggATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGc < 2:94028/93‑1 (MQ=255)
ggATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGc < 1:1800969/93‑1 (MQ=255)
ttGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGa > 1:1477445/1‑93 (MQ=255)
tGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGaa > 1:1738026/1‑93 (MQ=255)
ggCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGaaa < 2:2164395/93‑1 (MQ=255)
gTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTa > 1:4648759/1‑93 (MQ=255)
ttttGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTAc < 1:6237663/93‑1 (MQ=255)
ttttGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTAc < 1:487794/93‑1 (MQ=255)
ttGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGc < 2:516950/93‑1 (MQ=255)
tGCGGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGTGCTCTCTGCTTAATAGCGGAAATTACGCt < 2:1203625/93‑1 (MQ=255)
ccGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTc < 2:784594/93‑1 (MQ=255)
cGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCa < 2:1801517/93‑1 (MQ=255)
ggAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCaa < 1:188771/93‑1 (MQ=255)
ggAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCaa > 2:3765329/1‑93 (MQ=255)
gAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAAt < 2:4324913/93‑1 (MQ=255)
gAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAAt < 2:1716109/93‑1 (MQ=255)
gAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAAt < 1:4605522/93‑1 (MQ=255)
aGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATg > 1:211113/1‑93 (MQ=255)
ggggAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATgg > 2:3830760/1‑93 (MQ=255)
gAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGgcag < 1:8905/93‑1 (MQ=255)
gAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGgcag < 1:664206/93‑1 (MQ=255)
aaTTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGgcagca > 1:5040498/1‑93 (MQ=255)
aaTTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGgcagca > 1:1846336/1‑93 (MQ=255)
aaTTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGgcagca > 2:5231262/1‑93 (MQ=255)
aaTTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGgcagca < 2:1231237/93‑1 (MQ=255)
aTTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCAc > 1:4381999/1‑93 (MQ=255)
tGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGc > 2:2399940/1‑93 (MQ=255)
tattaCAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAAtt < 1:2882196/93‑1 (MQ=255)
tattaCAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAAtt > 2:5352688/1‑93 (MQ=255)
attaCAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAAttt > 2:2543097/1‑93 (MQ=255)
cAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTc < 2:633160/93‑1 (MQ=255)
agagGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCa > 1:3495990/1‑93 (MQ=255)
agagGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCa < 1:946090/93‑1 (MQ=255)
gagGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCAt < 1:4436654/93‑1 (MQ=255)
ggCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATcg > 1:6200230/1‑93 (MQ=255)
ggCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATcg > 1:6086663/1‑93 (MQ=255)
cccAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATcgcg > 1:783601/1‑93 (MQ=255)
ccAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGt < 2:4216741/93‑1 (MQ=255)
ccAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGt > 1:1405924/1‑93 (MQ=255)
cAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGtt > 1:1536082/1‑93 (MQ=255)
cAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGtt > 1:5527908/1‑93 (MQ=255)
cAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGtt > 2:2430986/1‑93 (MQ=255)
aaaaacaaaaacCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCt < 1:2045200/93‑1 (MQ=255)
aacaaaaacCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCtttt > 1:5463072/1‑93 (MQ=255)
acaaaaacCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTc < 2:2605405/93‑1 (MQ=255)
acaaaaacCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTc < 2:2109998/93‑1 (MQ=255)
aaaaacCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCa < 1:164609/93‑1 (MQ=255)
aaaaacCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCa < 2:2844285/93‑1 (MQ=255)
aaaaacCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCa > 2:2615610/1‑93 (MQ=255)
aaaacCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAg > 1:2256755/1‑93 (MQ=255)
aaaacCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAg > 1:1589989/1‑93 (MQ=255)
acCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTg < 1:4345904/93‑1 (MQ=255)
ccccGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTgg < 2:1617451/93‑1 (MQ=255)
cccGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGc > 2:1375187/1‑93 (MQ=255)
ccGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCg < 2:2368949/93‑1 (MQ=255)
cGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCGt > 1:2028530/1‑93 (MQ=255)
ggACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCGTa > 1:5948046/1‑93 (MQ=255)
ggACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCGTa < 2:4164817/93‑1 (MQ=255)
gACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCGTac < 2:3228588/93‑1 (MQ=255)
gACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCGTac > 1:2913898/1‑93 (MQ=255)
ctctCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCGTacac > 2:5990725/1‑93 (MQ=255)
ctctCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTCTCATCGCGTTCTTTTCCAGCTGGCGTacac > 1:2788789/1‑93 (MQ=255)
tctcATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCGTacacc > 1:3331886/1‑92 (MQ=255)
tctcATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCGTACACg < 1:2465221/93‑1 (MQ=255)
tctcATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCGTACACg > 2:4032292/1‑93 (MQ=255)
ctcATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCGTACACGc < 1:426307/93‑1 (MQ=255)
ctcATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCGTACACGc < 2:4522515/93‑1 (MQ=255)
cATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCGTACACGCTc < 2:5442201/93‑1 (MQ=255)
cATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCGTACACGCTc > 1:1245009/1‑93 (MQ=255)
cATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCGTACACGCTc > 2:432691/1‑93 (MQ=255)
aTCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCGTACACGCTCa > 2:2927988/1‑93 (MQ=255)
aTCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCGTACACGCTCa > 2:1485132/1‑93 (MQ=255)
aTCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCGTACACGCTCa < 2:1437621/93‑1 (MQ=255)
tCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCGTACACGCTCAg < 1:2375532/93‑1 (MQ=255)
tCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCGTACACGCTCAg > 1:5896381/1‑93 (MQ=255)
cAGGGCTCTCTGCTTTATAGCGGCAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTTCAGCTGGCGTACACGCTCATCg > 2:1944962/1‑93 (MQ=255)
cAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCGTACACGCTCAGCg > 1:2290534/1‑93 (MQ=255)
cAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCGTACACGCTCAGCg > 1:3901965/1‑93 (MQ=255)
cAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCGTACACGCTCAGCg > 2:607044/1‑93 (MQ=255)
cAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCGTACACGCTCAGCg > 1:5402001/1‑93 (MQ=255)
aGGGCTCTCTGCTTAATAGCGTAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTCGCGTACACGCTCAGCgg < 1:1000776/93‑1 (MQ=255)
aGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCGTACACGCTCAGCgg > 2:4602872/1‑93 (MQ=255)
aGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCGTACACGCTCAGCgg > 1:512125/1‑93 (MQ=255)
|
ACAATCTGCGTGGGGATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGTTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCGTACACGCTCAGCGGA > NC_000913/3597449‑3597628
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
TAACAATCTGCGTGGGGATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGTTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCGTACACGCTCAGCGGAAACG > NC_000913/3597447‑3597632
|
TAACAATCTGCGTGGGGATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCT < SRR4302533.737877/94‑1 (MQ=60)
AACAATCTGCGTGGGGATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTC < SRR4302533.256442/94‑1 (MQ=60)
ACAATCTGCGTGGGGATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCT < SRR4302533.6101586/94‑1 (MQ=60)
CAATCTGCGTGGGGATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTC > SRR4302533.839468/1‑94 (MQ=60)
AATCTGCGTGGGGATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCT < SRR4302533.4414000/94‑1 (MQ=60)
AATCTGCGTGGGGATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCT < SRR4302533.5457255/94‑1 (MQ=60)
AATCTGCGTGGGGATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCT < SRR4302533.1505886/94‑1 (MQ=60)
ATCTGCGTGGGGATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTG > SRR4302533.4681047/1‑94 (MQ=60)
ATCTGCGTGGGGATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTG < SRR4302533.1799701/94‑1 (MQ=60)
ATCTGCGTGGGGATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTG > SRR4302533.1967288/1‑94 (MQ=60)
ATCTGCGTGGGGATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTG > SRR4302533.4533112/1‑94 (MQ=60)
ATCTGCGTGGGGATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTG < SRR4302533.2142795/94‑1 (MQ=60)
ATCTGCGTGGGGATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTG > SRR4302533.5641908/1‑94 (MQ=60)
ATCTGCGTGGGGATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTG < SRR4302533.2759436/94‑1 (MQ=60)
CTGCGTGGGGATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCT < SRR4302533.4980126/94‑1 (MQ=60)
TGCGTGGGGATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTT > SRR4302533.3290856/1‑94 (MQ=60)
TGCGTGGGGATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTT < SRR4302533.4782245/94‑1 (MQ=60)
CGTGGGGATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAA > SRR4302533.4853004/1‑94 (MQ=60)
GTGTGGATTGGCGTGTTGCCGGAGGGTAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAAT < SRR4302533.5089292/94‑1 (MQ=60)
GTGGGGATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAAT > SRR4302533.3688711/1‑94 (MQ=60)
GTGGGGATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAAT < SRR4302533.408734/94‑1 (MQ=60)
GTGGGGATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAAT < SRR4302533.2926281/94‑1 (MQ=60)
TGGGGATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATA > SRR4302533.3181816/1‑94 (MQ=60)
GGGGATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAG < SRR4302533.5846209/94‑1 (MQ=60)
GGGATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGC < SRR4302533.6223660/94‑1 (MQ=60)
GGATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCG < SRR4302533.4601288/94‑1 (MQ=60)
GGATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCG < SRR4302533.4772344/94‑1 (MQ=60)
GGATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCG < SRR4302533.1811928/94‑1 (MQ=60)
GATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGG > SRR4302533.5534248/1‑94 (MQ=60)
ATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGA > SRR4302533.466354/1‑94 (MQ=60)
ATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGA > SRR4302533.1486373/1‑94 (MQ=60)
TTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAA > SRR4302533.1748571/1‑94 (MQ=60)
GGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAAT < SRR4302533.3218663/94‑1 (MQ=60)
GCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATT < SRR4302533.3334329/94‑1 (MQ=60)
CGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTA > SRR4302533.4676925/1‑94 (MQ=60)
CGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTA < SRR4302533.1216637/94‑1 (MQ=60)
GTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTAC > SRR4302533.1831245/1‑94 (MQ=60)
GTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTAC > SRR4302533.1889354/1‑94 (MQ=60)
TTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACG < SRR4302533.490711/94‑1 (MQ=60)
TTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACG < SRR4302533.6210831/94‑1 (MQ=60)
TTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACG < SRR4302533.6275014/94‑1 (MQ=60)
TTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGC < SRR4302533.4859679/94‑1 (MQ=60)
TTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCT < SRR4302533.2352437/94‑1 (MQ=60)
TGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTNTCATCCAGGGGTCTCTNCTTAATAGCGGAANTNANGNTT > SRR4302533.1656356/1‑94 (MQ=60)
TGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTT < SRR4302533.1351673/94‑1 (MQ=60)
GCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTC < SRR4302533.4442128/94‑1 (MQ=60)
CGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAA < SRR4302533.2336724/94‑1 (MQ=60)
GGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAAT < SRR4302533.6228568/94‑1 (MQ=60)
GGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAAT < SRR4302533.189947/94‑1 (MQ=60)
GGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAAT < SRR4302533.2090876/94‑1 (MQ=60)
GGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAAT < SRR4302533.1662275/94‑1 (MQ=60)
GCAGGGGAAATTGATTATTACAGAAGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAAT < SRR4302533.3446105/94‑1 (MQ=60)
GAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATG < SRR4302533.4633422/94‑1 (MQ=60)
GAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATG > SRR4302533.212445/1‑94 (MQ=60)
GAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATG > SRR4302533.1444015/1‑94 (MQ=60)
AGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGG > SRR4302533.2052751/1‑94 (MQ=60)
GGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGC < SRR4302533.2877782/94‑1 (MQ=60)
GAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGC < SRR4302533.668127/94‑1 (MQ=60)
GAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGC < SRR4302533.8983/94‑1 (MQ=60)
AAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCA > SRR4302533.1857595/1‑94 (MQ=60)
AAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCA > SRR4302533.5071009/1‑94 (MQ=60)
AATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCAC > SRR4302533.4408457/1‑94 (MQ=60)
TGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCA < SRR4302533.2288199/94‑1 (MQ=60)
TGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCA < SRR4302533.171200/94‑1 (MQ=60)
TGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCA > SRR4302533.5946215/1‑94 (MQ=60)
ATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAAT > SRR4302533.5323736/1‑94 (MQ=60)
TTATTACAGAGGCCCAAAAAACAAAAACCCCGTACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATT < SRR4302533.1314181/94‑1 (MQ=60)
TATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTT < SRR4302533.2899926/94‑1 (MQ=60)
TATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTT > SRR4302533.824712/1‑94 (MQ=60)
TTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTT > SRR4302533.4548500/1‑94 (MQ=60)
ACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTC > SRR4302533.1499473/1‑94 (MQ=60)
CAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCA > SRR4302533.5499737/1‑94 (MQ=60)
CAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCA < SRR4302533.4848095/94‑1 (MQ=60)
CAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCA > SRR4302533.3517549/1‑94 (MQ=60)
CAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCA > SRR4302533.1816612/1‑94 (MQ=60)
AGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCAT < SRR4302533.951653/94‑1 (MQ=60)
GAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATC < SRR4302533.4463474/94‑1 (MQ=60)
GAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATC < SRR4302533.2688604/94‑1 (MQ=60)
AGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCG > SRR4302533.6123461/1‑94 (MQ=60)
AGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCG < SRR4302533.5877753/94‑1 (MQ=60)
AGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCG > SRR4302533.6237421/1‑94 (MQ=60)
GCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCG > SRR4302533.788211/1‑94 (MQ=60)
GCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCG < SRR4302533.4994095/94‑1 (MQ=60)
GCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCG < SRR4302533.2416087/94‑1 (MQ=60)
CCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGT > SRR4302533.5022022/1‑94 (MQ=60)
CCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGT > SRR4302533.324772/1‑94 (MQ=60)
CCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGT > SRR4302533.1414427/1‑94 (MQ=60)
CCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTT > SRR4302533.1545313/1‑94 (MQ=60)
CCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTT > SRR4302533.5561281/1‑94 (MQ=60)
CCAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTT > SRR4302533.4651304/1‑94 (MQ=60)
CAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTC > SRR4302533.6300708/1‑94 (MQ=60)
CAAAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTC > SRR4302533.3804653/1‑94 (MQ=60)
AAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTT < SRR4302533.2057808/94‑1 (MQ=60)
AAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTT < SRR4302533.627072/94‑1 (MQ=60)
AAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTT < SRR4302533.2801628/94‑1 (MQ=60)
AAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTT < SRR4302533.2801627/94‑1 (MQ=60)
AAAAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTT < SRR4302533.2560069/94‑1 (MQ=60)
AAACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTT > SRR4302533.5495987/1‑94 (MQ=60)
AACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTC < SRR4302533.1978315/94‑1 (MQ=60)
ACAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGCCAGCGCGCAATTTTTTCATCGCGTTCTTTTCC > SRR4302533.912084/1‑94 (MQ=60)
CAAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCA < SRR4302533.5886209/94‑1 (MQ=60)
AAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAG > SRR4302533.2270720/1‑94 (MQ=60)
AAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAG > SRR4302533.1599605/1‑94 (MQ=60)
AAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAG < SRR4302533.165656/94‑1 (MQ=60)
AAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAG < SRR4302533.4350016/94‑1 (MQ=60)
AAAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAG < SRR4302533.6180446/94‑1 (MQ=60)
AAAACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGC < SRR4302533.645965/94‑1 (MQ=60)
AACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTG > SRR4302533.5084539/1‑94 (MQ=60)
AACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTG > SRR4302533.3422911/1‑94 (MQ=60)
AACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTG < SRR4302533.4912954/94‑1 (MQ=60)
ACCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGG < SRR4302533.4372100/94‑1 (MQ=60)
CCCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGC < SRR4302533.2118763/94‑1 (MQ=60)
CCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCG > SRR4302533.2225873/1‑94 (MQ=60)
CCCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCG < SRR4302533.2910316/94‑1 (MQ=60)
CCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCGT > SRR4302533.2041052/1‑94 (MQ=60)
CCGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCGT > SRR4302533.3143500/1‑94 (MQ=60)
CGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCGTA > SRR4302533.1000831/1‑94 (MQ=60)
CGGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCGTA > SRR4302533.5984024/1‑94 (MQ=60)
GGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCGTAC > SRR4302533.2931775/1‑94 (MQ=60)
GGACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCGTAC > SRR4302533.4962621/1‑94 (MQ=60)
ACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCGTACAC > SRR4302533.784426/1‑94 (MQ=60)
ACTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTCTCATCGCGTTCTTTTCCAGCTGGCGTACAC > SRR4302533.2805930/1‑94 (MQ=60)
CTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCGTACACG < SRR4302533.1606601/94‑1 (MQ=60)
CTCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCGTACACC > SRR4302533.3352477/1‑94 (MQ=60)
TCTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCGTACACGC < SRR4302533.2480427/94‑1 (MQ=60)
CTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCGTACACGCT > SRR4302533.5421883/1‑94 (MQ=60)
CTCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCGTACACGCT < SRR4302533.428850/94‑1 (MQ=60)
TCATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCGTACACGCTC > SRR4302533.1252442/1‑94 (MQ=60)
ATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGGAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCGTACACGCTCAG > SRR4302533.4467241/1‑94 (MQ=60)
ATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCGTACACGCTCAG < SRR4302533.4399132/94‑1 (MQ=60)
ATCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCGTACACGCTCAG > SRR4302533.5931987/1‑94 (MQ=60)
TCCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCGTACACGCTCAGC < SRR4302533.2390232/94‑1 (MQ=60)
CCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCGTACACGCTCAGCG > SRR4302533.3925791/1‑94 (MQ=60)
CCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCGTACACGCTCAGCG > SRR4302533.5946306/1‑94 (MQ=60)
CCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCGTACACGCTCAGCG > SRR4302533.5434464/1‑94 (MQ=60)
CCAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCGTACACGCTCAGCG > SRR4302533.2304719/1‑94 (MQ=60)
CAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCGTACACGCTCAGCGG > SRR4302533.6259764/1‑94 (MQ=60)
CAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCGTACACGCTCAGCGG > SRR4302533.515168/1‑94 (MQ=60)
CAGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCGTACACGCTCAGCGG < SRR4302533.1615236/94‑1 (MQ=60)
AGGGCTCTCTGCTTAATAGCGTAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTCGCGTACACGCTCAGCGGA < SRR4302533.1006619/94‑1 (MQ=60)
AGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCGTACACGCTCAGCGGA > SRR4302533.4319378/1‑94 (MQ=60)
AGGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCGTACACGCTCAGCGGA > SRR4302533.1576175/1‑94 (MQ=60)
GGGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCGTACACGCTCAGCGGAA > SRR4302533.3984252/1‑94 (MQ=60)
GGCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCGTACACGCCCAGCGGAAA > SRR4302533.2487866/1‑94 (MQ=60)
GCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCGTACACGCTCAGCGGAAAC < SRR4302533.2007315/94‑1 (MQ=60)
GCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCGTACACGCTCAGCGGAAAC < SRR4302533.897230/94‑1 (MQ=60)
GCTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCAGGCGTACACGCTCAGCGGAAAC < SRR4302533.5791240/94‑1 (MQ=60)
CTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCGTACACGCTCAGCGGAAACG > SRR4302533.1737174/1‑94 (MQ=60)
CTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCGTACACGCTCAGCGGAAACG > SRR4302533.1585768/1‑94 (MQ=60)
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TAACAATCTGCGTGGGGATTGGCGTTTTGCCGGAGGGGAAATTGATTATTACAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGTTCTCTGCTTAATAGCGGAAATTACGCTTCAATGGCAGCACGCAATTTTTTCATCGCGTTCTTTTCCAGCTGGCGTACACGCTCAGCGGAAACG > NC_000913/3597447‑3597632
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
