Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	1548	369.5	20095359	96.9%	19472402	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,667,150	A→G	intergenic (‑332/‑72)	yhjA ← / → treF	putative cytochrome C peroxidase/cytoplasmic trehalase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,667,150	0	A	G	94.4%	1699.0 / 56.8	592	intergenic (‑332/‑72)	yhjA/treF	putative cytochrome C peroxidase/cytoplasmic trehalase
Reads supporting (aligned to +/- strand): ref base A (15/18); new base G (271/288); total (286/306)
Fisher's exact test for biased strand distribution p-value = 8.58e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.98e-01

Only 100 of 628 total aligned reads displayed.

AAATCGGTATTTTTATAAATTCCATTGATATTAGTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCCTTATGCTCAATCAGAAAATTC  >  NC_000913/3667060‑3667240

 aaTCGGTATTTTTATAAATTCCATTGATATTAGTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCccgcca                                                                                         >  2:3864579/1‑93 (MQ=255)

 aaTCGGTATTTTTATAAATTCCATTGATATTAGTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCccgcca                                                                                         >  2:8735665/1‑93 (MQ=255)

  aTCGGTATTTTTATAAATTCCATTGATATTAGTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCGCCAg                                                                                        >  2:2234238/1‑93 (MQ=255)

   tCGGTATTTTTATAAATTCCATTGATATTAGTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCGCCAgg                                                                                       <  2:1836898/93‑1 (MQ=255)

    cGGTATTTTTATAAATTCCATTGATATTAGTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGc                                                                                      <  2:7576705/93‑1 (MQ=255)

      gTATTTTTATAAATTCCATTGATATTAGTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCgg                                                                                    >  2:5876675/1‑93 (MQ=255)

       tATTTTTATAAATTCCATTGATATTAGTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCTCGCTTTGTCGCCCGCCAGGCGGa                                                                                   >  2:7233464/1‑93 (MQ=255)

       tATTTTTATAAATTCCATTGATATTAGTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGa                                                                                   >  2:2830269/1‑93 (MQ=255)

       tATTTTTATAAATTCCATTGATATTAGTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGa                                                                                   >  1:2666419/1‑93 (MQ=255)

       tATTTTTATAAATTCCATTGATATTAGTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCACCAGGCGGa                                                                                   >  2:4540621/1‑93 (MQ=255)

        aTTTTTATAAATTCCATTGATATTAGTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGAg                                                                                  <  1:9291572/93‑1 (MQ=255)

         tttttATAAATTACATTGACATTAGTGCGTTATATTTTTTGCCAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGAgg                                                                                 >  1:2984447/1‑92 (MQ=255)

          ttttATAAATTCCATTGATATTAGTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGCg                                                                                >  1:7754160/1‑93 (MQ=255)

           tttATTAATTCCATTGATATTAGTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCACCAGGCGGAGCGa                                                                               <  1:3577670/93‑1 (MQ=255)

           tttATAAATTCCATTGATATTAGTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGa                                                                               <  2:205026/93‑1 (MQ=255)

            ttATAAATTCCATTGATATTAGTGCGTTATATTTTTTGACAGGTTAATAAACGTGATGCACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGaa                                                                              <  1:918879/93‑1 (MQ=255)

            ttATAAATTCCATTGATATTAGTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGag                                                                              <  2:6166597/93‑2 (MQ=255)

            ttATAAATTCCATTGATATTAGTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGaa                                                                              <  2:4698530/93‑1 (MQ=255)

            ttATAAATTCCATTGATATTAGTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGaa                                                                              <  2:5427064/93‑1 (MQ=255)

            ttATAAATTCCATTGATATTAGTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGaa                                                                              <  1:6577173/93‑1 (MQ=255)

            ttATAAATTCCATTGATATTAGTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGaa                                                                              <  2:2520428/93‑1 (MQ=255)

            ttATAAATTCCATTGATATTAGTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGaa                                                                              <  2:3294488/93‑1 (MQ=255)

            ttATAAATTCCATTGATATTAGTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGaa                                                                              <  1:497658/93‑1 (MQ=255)

                 aaTTCCATTGATATTAGTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGAATGACt                                                                         >  2:367635/1‑93 (MQ=255)

                  aTTCCATTGATATTAGTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGAATGACTa                                                                        >  1:5326510/1‑93 (MQ=255)

                  aTTCCATTGATATTAGTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGAATGACTa                                                                        <  1:6796106/93‑1 (MQ=255)

                    tCCATTGATATTAGTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGAATGACTAcc                                                                      <  1:9782623/93‑1 (MQ=255)

                      cATTGATATTAGTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGAATGACTACCCt                                                                    <  1:449140/93‑1 (MQ=255)

                      cATTGATATTAGTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGAATGACTACCCt                                                                    <  1:8373739/93‑1 (MQ=255)

                       aTTGATATTAGTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGAATGACTACCCtt                                                                   <  2:1679969/93‑1 (MQ=255)

                        ttGATATTAGTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGAATGACTACCCTTa                                                                  >  1:1889146/1‑93 (MQ=255)

                        ttGATATTAGTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGAATGACTACCCTTa                                                                  >  1:9558830/1‑93 (MQ=255)

                         tGATATTAGTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGAATGACTACCCTTaa                                                                 >  2:10026534/1‑93 (MQ=255)

                         tGATATTAGTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGAATGACTACCCTTaa                                                                 >  1:7332048/1‑93 (MQ=255)

                         tGATATTAGTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGAATGACTACCCTTaa                                                                 <  1:8487828/93‑1 (MQ=255)

                         tGATATTAGTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGAATGACTACCCTTaa                                                                 >  2:7946645/1‑93 (MQ=255)

                         tGATATTAGTGCGTTATATTTTTTGACAGGTTAATAAACGTAATCCACCGCACGCTTGGTCGCCCGCCAGGCGGAGCGAATGACTACCCTTaa                                                                 <  1:10011344/93‑1 (MQ=255)

                          gATATTAGTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGAATGACTACCCTTaaa                                                                >  2:9300064/1‑93 (MQ=255)

                            tatTAGTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGAATGACTACCCTTAAAGa                                                              <  1:4707811/93‑1 (MQ=255)

                            tatTAGTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGAATGACTACCCTTAAAGa                                                              <  1:9360419/93‑1 (MQ=255)

                             atTAGTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGAATGACTACCCTTAAAGaa                                                             >  2:8447098/1‑93 (MQ=255)

                               tAGTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGAATGACTACCCTTAAAGaaaa                                                           >  2:8898930/1‑93 (MQ=255)

                                 gTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGc                                                         >  2:4857177/1‑93 (MQ=255)

                                 gTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGAATGACAACCCTTAAAGAAAAGc                                                         <  2:8577581/93‑1 (MQ=255)

                                   gCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCg                                                       <  2:3587613/93‑1 (MQ=255)

                                   gCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCg                                                       <  1:5664656/93‑1 (MQ=255)

                                     gTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGCATGACTACCCTTAAAGAAAAGCCGaa                                                     >  2:7737427/1‑92 (MQ=255)

                                      ttATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATa                                                    >  1:747465/1‑93 (MQ=255)

                                      ttATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATa                                                    <  2:6048977/93‑1 (MQ=255)

                                       tataTTTTTTGACAGGTTAATAAACTTTATCCACCGCACGCTTTGTCGCCCGCCAGGCGAAGCGAATGACTCCCCTTAAAGAAAATCCGATaa                                                   <  2:7122881/93‑1 (MQ=255)

                                           ttttttGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATAATTAg                                               >  1:2482510/1‑93 (MQ=255)

                                            tttttGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATAATTAGc                                              <  2:8995721/93‑1 (MQ=255)

                                             ttttGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATAATTAGcg                                             >  2:9102478/1‑93 (MQ=255)

                                              tttGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATAATTAGcga                                            <  1:7631073/93‑1 (MQ=255)

                                                 gACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATAATTAGcgacga                                         >  1:1658850/1‑93 (MQ=255)

                                                 gACAGGTTAATAAACGTGACCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATAATTAGcgacga                                         <  2:9522537/93‑1 (MQ=255)

                                                  aCAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATAATTAGCGACGaa                                        <  1:3229519/93‑1 (MQ=255)

                                                   cAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATAATTAGCGACGAAt                                       >  1:1116236/1‑93 (MQ=255)

                                                   cAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATAATTAGCGACGAAt                                       <  1:1242533/93‑1 (MQ=255)

                                                    aGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATAATTAGCGACGAAtt                                      >  2:3457662/1‑93 (MQ=255)

                                                    aGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATAATTAGCGACGAAtt                                      <  1:8672188/93‑1 (MQ=255)

                                                     ggTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATAATTAGCGACGAAttt                                     <  2:4045874/93‑1 (MQ=255)

                                                     ggTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATAATTAGCGACGAAttt                                     <  2:1369513/93‑1 (MQ=255)

                                                     ggTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATAATTAGCGACGAAttt                                     <  2:2635871/93‑1 (MQ=255)

                                                     ggTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATAATTAGCGACGAAttt                                     >  1:3502281/1‑93 (MQ=255)

                                                     ggTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATAATTAGCGACGAAttt                                     >  1:3741455/1‑93 (MQ=255)

                                                      gTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTc                                    >  1:2100545/1‑93 (MQ=255)

                                                        taataaACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCgg                                  >  2:9787226/1‑93 (MQ=255)

                                                        taataaACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCgg                                  >  2:15601/1‑93 (MQ=255)

                                                         aataaACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGa                                 <  1:6246149/93‑1 (MQ=255)

                                                         aataaACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGa                                 >  2:2418561/1‑93 (MQ=255)

                                                         aataaACGTGATCCACCGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGa                                 <  2:6991952/93‑1 (MQ=255)

                                                            aaaCGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGt                              >  1:7915058/1‑93 (MQ=255)

                                                            aaaCGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGt                              <  2:5333686/93‑1 (MQ=255)

                                                              aCGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTg                            >  2:8306799/1‑93 (MQ=255)

                                                               cGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTgg                           <  1:5875983/93‑1 (MQ=255)

                                                               cGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTgg                           <  1:3912359/93‑1 (MQ=255)

                                                                  gATCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATc                        <  2:5074995/93‑1 (MQ=255)

                                                                   aTCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATcc                       <  2:6913180/93‑1 (MQ=255)

                                                                    tCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCCt                      <  1:2197296/93‑1 (MQ=255)

                                                                    tCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCCt                      <  1:8177101/93‑1 (MQ=255)

                                                                     ccACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCCtt                     <  2:650324/93‑1 (MQ=255)

                                                                      cACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCCTTa                    <  2:4375723/93‑1 (MQ=255)

                                                                      cACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCCTTa                    <  2:9700559/93‑1 (MQ=255)

                                                                      cACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCCTTa                    <  2:7362629/93‑1 (MQ=255)

                                                                      cACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGAATCCTTa                    <  1:4188157/93‑1 (MQ=255)

                                                                       cccGCACGCTTTGTCGCCCGCCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCCTTAt                   <  2:3052970/92‑1 (MQ=255)

                                                                       aCCGCACGCTTTGTCGCCCGCCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCCTTAt                   >  2:5517671/1‑93 (MQ=255)

                                                                       aCCGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCCTTAt                   <  1:6386254/93‑1 (MQ=255)

                                                                        ccGCACGCTTTGTCGCCCGCCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCCTTATg                  >  1:4587401/1‑93 (MQ=255)

                                                                        ccGCACGCTTTGTCGCCCGCCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCCTTATg                  >  1:6901465/1‑93 (MQ=255)

                                                                        ccGCACGCTTTGTCGCCCGCCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCCTTATg                  >  1:7132986/1‑93 (MQ=255)

                                                                        ccGCACGCTTTGTCGCCCGCCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCCTTATg                  >  1:7219224/1‑93 (MQ=255)

                                                                         cGCACGCTTTGTCGCCCGCCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCCTTATGc                 >  1:5150262/1‑93 (MQ=255)

                                                                         cGCACGCTTTGTCGCCCGCCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCCTTATGc                 >  2:5645534/1‑93 (MQ=255)

                                                                           cACGCTTTGTCGCCCACCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCCTTATGCTc               >  1:6054021/1‑93 (MQ=255)

                                                                               cTTTGTCGCCCGCCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCCTTATGCTCAATc           <  2:1182207/93‑1 (MQ=255)

                                                                               cTTTGTCGCCCGCCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCCTTATGCTCAATc           <  2:8126200/93‑1 (MQ=255)

                                                                               cTTTGTCGCCCGCCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCCTTATGCTCAATc           <  1:1426941/93‑1 (MQ=255)

                                                                                    tCGCCCGCCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCCTTATGCTCAATCAGaaa      >  1:6740240/1‑93 (MQ=255)

AAATCGGTATTTTTATAAATTCCATTGATATTAGTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCCTTATGCTCAATCAGAAAATTC  >  NC_000913/3667060‑3667240

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 19 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output Only 200 of 323 total aligned reads displayed.

ACCAAATCGGTATTTTTATAAATTCCATTGATATTAGTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCCTTATGCTCAATCAGAAAATTCAAA  >  NC_000913/3667057‑3667243

ACCAAATCGGTATTTTTATAAATTCCATTGATATTAGTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCG                                                                                               >  SRR4302540.991250/1‑94 (MQ=60)

ACCAAATCGGTATTTTTATAAATTCCATTGATATTAGTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCG                                                                                               <  SRR4302540.1979571/94‑1 (MQ=60)

ACCAAATCGGTATTTTTATAAATTCCATTGATATTAGTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCG                                                                                               >  SRR4302540.2235209/1‑94 (MQ=60)

ACCAAATCGGTATTTTTATAAATTCCATTGATATTAGTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCG                                                                                               <  SRR4302540.2530551/94‑1 (MQ=60)

 CCAAATCGGTATTTTTATAAATTCCATTGATATTAGTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCGC                                                                                              >  SRR4302540.7650087/1‑94 (MQ=60)

  CAAATCGGTATTTTTATACATTCCATTGATATTAGTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCGCC                                                                                             <  SRR4302540.3979776/94‑1 (MQ=60)

  CAAATCGGTATTTTTATAAATTCCATTGATATTAGTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCGCC                                                                                             >  SRR4302540.9561373/1‑94 (MQ=60)

  CAAATCGGTATTTTTATAAATTCCATTGATATTAGTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCACC                                                                                             >  SRR4302540.2426008/1‑94 (MQ=60)

   AAATCGGTATTTTTATAAATTCCATTGATATTAGTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCGCCA                                                                                            >  SRR4302540.8357164/1‑94 (MQ=60)

   AAATCGGTATTTTTATAAATTCCATTGATATTAGTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCGCCA                                                                                            >  SRR4302540.8231348/1‑94 (MQ=60)

    AATCGGTATTTTTATAAATTCNATTGATATTAGTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCACCAG                                                                                           <  SRR4302540.851219/94‑1 (MQ=60)

    AATCGGTATTTTTATAAATTCCATTGATATTAGTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCGCCAG                                                                                           >  SRR4302540.7896249/1‑94 (MQ=60)

     ATCGGTATTTTTATAAATTCCATTGATATTAGTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCGCCAGG                                                                                          >  SRR4302540.9327352/1‑94 (MQ=60)

     ATCGGTATTTTTATAAATTACATAGATATTAGTACGTTATAATTTATGACAGGTTAATAAACGTGATCCACCGCACGCTTTGACGCCCGCCAAG                                                                                          <  SRR4302540.9075531/94‑1 (MQ=60)

      TCGGTATTTTTATAAATTCCATTGATATTAGTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGC                                                                                         >  SRR4302540.579160/1‑94 (MQ=60)

      TCGGTATTTTTATAAATTCCATTGATATTAGTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGC                                                                                         <  SRR4302540.2927780/94‑1 (MQ=60)

       CGGTATTTTTATAAATTCCATTGATATTAGTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCG                                                                                        >  SRR4302540.1493358/1‑94 (MQ=60)

       CGGTATTTTTATAAATTCCATTGATATTAGTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCG                                                                                        <  SRR4302540.2280697/94‑1 (MQ=60)

       CGGTATTTTTATAAATTCCATTGATATTAGTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCG                                                                                        <  SRR4302540.5625412/94‑1 (MQ=60)

       CGGTATTTTTATAAATTCCATTGATATTAGTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCACCAGGCG                                                                                        <  SRR4302540.1427412/94‑1 (MQ=60)

         GTATTTTTATAAATTCCATTGATATTAGTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGA                                                                                      >  SRR4302540.2595219/1‑94 (MQ=60)

         GTATTTTTATAAATTCCATTGATATTAGTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGA                                                                                      <  SRR4302540.575915/94‑1 (MQ=60)

         GTATTTTTATAAATTCCATTGATATTAGTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGA                                                                                      >  SRR4302540.2695322/1‑94 (MQ=60)

         GTATTTTTATAAATTCCATTGATATTAGTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGA                                                                                      <  SRR4302540.9372116/94‑1 (MQ=60)

         GTATTTTTATAAATTCCATTGATATTAGTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGA                                                                                      >  SRR4302540.3231230/1‑94 (MQ=60)

          TATTTTTATAAATTCCATTGATATTAGTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGAG                                                                                     >  SRR4302540.79634/1‑94 (MQ=60)

          TATTTTTATAAATTCCATTGATATTAGTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGAG                                                                                     <  SRR4302540.7449880/94‑1 (MQ=60)

           ATTTTTATAAATTCCATTGATATTAGTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGC                                                                                    <  SRR4302540.9402608/94‑1 (MQ=60)

           ATTTTTATAAATTCCATTGATATTAGTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGC                                                                                    >  SRR4302540.978630/1‑94 (MQ=60)

           ATTTTTATAAATTCCATTGATATTAGTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGC                                                                                    >  SRR4302540.3017376/1‑94 (MQ=60)

           ATTTTTATAAATTCCATTGATATTAGTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGC                                                                                    >  SRR4302540.6048568/1‑94 (MQ=60)

           ATTTTTATAAATTCCATTGATATTAGTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGC                                                                                    <  SRR4302540.552896/94‑1 (MQ=60)

           ATTTTTATAAATTCCATTGATATTAGTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGC                                                                                    <  SRR4302540.9402607/94‑1 (MQ=60)

           ATTTTTATAAATTCCATTGATATTAGTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGC                                                                                    <  SRR4302540.740907/94‑1 (MQ=60)

           ATTTTTATAAATTCCATTGATATTAGTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCACCAGGCGGAGC                                                                                    <  SRR4302540.6491918/94‑1 (MQ=60)

           ATTTTTATAAATTACATTGACATTAGTGCGTTATATTTTTTGCCAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGG                                                                                    >  SRR4302540.3017377/1‑94 (MQ=60)

            TTTTTATAAATTCCATTGATATTAGTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGCG                                                                                   <  SRR4302540.6954201/94‑1 (MQ=60)

            TTTTTATAAATTCCATTGATATTAGTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGCG                                                                                   >  SRR4302540.7226046/1‑94 (MQ=60)

            TTTTTATAAATTCCATTGATATTAGTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGCG                                                                                   >  SRR4302540.4238774/1‑94 (MQ=60)

              TTTATTAATTCCATTGATATTAGTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCACCAGGCGGAGCGAA                                                                                 <  SRR4302540.3616749/94‑1 (MQ=60)

               TTATAAATTCCATTGATATTAGTGCGTTATATTTTTTGACAGGTTAATAAACGTGATGCACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGAAT                                                                                <  SRR4302540.928574/94‑1 (MQ=60)

               TTATAAATTCCATTGATATTAGTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGAAT                                                                                <  SRR4302540.502995/94‑1 (MQ=60)

               TTATAAATTCCATTGATATTAGTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGAAT                                                                                >  SRR4302540.5723105/1‑94 (MQ=60)

               TTATAAATTCCATTGATATTAGTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGAAT                                                                                >  SRR4302540.4968691/1‑94 (MQ=60)

               TTATAAATTCCATTGATATTAGTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGAAT                                                                                <  SRR4302540.6650023/94‑1 (MQ=60)

               TTATAAATTCCATTGATATTAGTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGAAT                                                                                <  SRR4302540.6345123/94‑1 (MQ=60)

               TTATAAATTCCATTGATATTAGTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGAAT                                                                                <  SRR4302540.4543079/94‑1 (MQ=60)

               TTATAAATTCCATTGATATTAGTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGAAT                                                                                <  SRR4302540.1657459/94‑1 (MQ=60)

                TATAAATTCCATTGATATTAGTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGAATG                                                                               >  SRR4302540.318426/1‑94 (MQ=60)

                 ATAAATTCCATTGATATTAGTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGAATGA                                                                              <  SRR4302540.3888484/94‑1 (MQ=60)

                  TAAATTCCATTGATATTAGTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGAATGAC                                                                             >  SRR4302540.3658316/1‑94 (MQ=60)

                  TAAATTCCATTGATATTAGTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGAATGAC                                                                             <  SRR4302540.8177452/94‑1 (MQ=60)

                  TAAATTCCATTGATATTAGTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGAATGAC                                                                             <  SRR4302540.7707901/94‑1 (MQ=60)

                    AATTCCATTGATATTAGTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGAATGACTA                                                                           >  SRR4302540.5384856/1‑94 (MQ=60)

                     ATTCCATTGATATTAGTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGAATGACTAC                                                                          <  SRR4302540.1001896/94‑1 (MQ=60)

                     ATTCCATTGATATTAGTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGAATGACTAC                                                                          <  SRR4302540.6871274/94‑1 (MQ=60)

                     ATTCCATTGATATTAGTGCGTTATATTTTGTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGAATGACTAC                                                                          <  SRR4302540.6870977/94‑1 (MQ=60)

                      TTCCATTGATATTAGTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGAATGACTACC                                                                         >  SRR4302540.10140844/1‑94 (MQ=60)

                       TCCATTGATATTAGTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGAATGACTACCC                                                                        <  SRR4302540.9897267/94‑1 (MQ=60)

                       TCCATTGATATTAGTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGAATGACTACCC                                                                        <  SRR4302540.6498513/94‑1 (MQ=60)

                        TCATTGATATTAGTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACTACCCT                                                                       <  SRR4302540.9688436/94‑1 (MQ=60)

                        CCATTGATATTAGTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGAATGACTACCCT                                                                       >  SRR4302540.4726843/1‑94 (MQ=60)

                        CCATTGATATTAGTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGAATGACTACCCT                                                                       >  SRR4302540.6589973/1‑94 (MQ=60)

                         CATTGATATTAGTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGAATGACTACCCTT                                                                      <  SRR4302540.8333805/94‑1 (MQ=60)

                         CATTGATATTAGTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGAATGACTACCCTT                                                                      >  SRR4302540.9466728/1‑94 (MQ=60)

                         CATTGATATTAGTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGAATGACTACCCTT                                                                      >  SRR4302540.9529524/1‑94 (MQ=60)

                         CATTGATATTAGTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGAATGACTACCCTT                                                                      <  SRR4302540.8470916/94‑1 (MQ=60)

                          ATTGATATTAGTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGAATGACTACCCTTA                                                                     <  SRR4302540.6839061/94‑1 (MQ=60)

                          ATTGATATTAGTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGAATGACTACCCTTA                                                                     >  SRR4302540.2381410/1‑94 (MQ=60)

                          ATTGATATTAGTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGAATGACTACCCTTA                                                                     >  SRR4302540.9671849/1‑94 (MQ=60)

                          ATTGATATTAGTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGAATGACTACCCTTA                                                                     >  SRR4302540.1909823/1‑94 (MQ=60)

                          ATTGATATTAGTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACTACCCTTA                                                                     <  SRR4302540.9571206/94‑1 (MQ=60)

                           TTGATATTAGTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGAATGACTACCCTTAA                                                                    >  SRR4302540.7413897/1‑94 (MQ=60)

                            TGATATTAGTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGAATGACTACCCTTAAA                                                                   >  SRR4302540.753061/1‑94 (MQ=60)

                            TGATATTAGTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGAATGACTACCCTTAAA                                                                   <  SRR4302540.8586438/94‑1 (MQ=60)

                            TGATATTAGTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGAATGACTACCCTTAAA                                                                   <  SRR4302540.283436/94‑1 (MQ=60)

                               TATTAGTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGAATGACTACCCTTAAAGAA                                                                <  SRR4302540.4758127/94‑1 (MQ=60)

                               TATTAGTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGAATGACTACCCTTAAAGAA                                                                <  SRR4302540.3740072/94‑1 (MQ=60)

                               TATTAGTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACTACCCTTAAAGAA                                                                >  SRR4302540.9442840/1‑94 (MQ=60)

                                ATTAGTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGAATGACTACCCTTAAAGAAA                                                               >  SRR4302540.7190631/1‑94 (MQ=60)

                                ATTAGTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGAATGACTACCCTTAAAGAAA                                                               >  SRR4302540.3091047/1‑94 (MQ=60)

                                ATTAGTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACACTTTGTCGCCCGCCAGGCGGAGCGAATGACTCCCCTTAACGAAA                                                               >  SRR4302540.7257273/1‑94 (MQ=60)

                                 TTAGTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGAATGACTACCCTTAAAGAAAA                                                              >  SRR4302540.1543415/1‑94 (MQ=60)

                                 TTAGTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGAATGACTACCCTTAAAGAAAA                                                              <  SRR4302540.6398886/94‑1 (MQ=60)

                                 TTAGTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGAATGACTACCCTTAAAGAAAA                                                              <  SRR4302540.2733697/94‑1 (MQ=60)

                                  TAGTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGAATGACTACCCTTAAAGAAAAG                                                             <  SRR4302540.5938115/94‑1 (MQ=60)

                                  TAGTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGAATGACTACCCTTAAAGAAAAG                                                             <  SRR4302540.8873328/94‑1 (MQ=60)

                                  TAGTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGAATGACTACCCTTAAAGAAAAG                                                             <  SRR4302540.10064052/94‑1 (MQ=60)

                                   AGTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGC                                                            >  SRR4302540.7691497/1‑94 (MQ=60)

                                   AGTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGC                                                            >  SRR4302540.8244950/1‑94 (MQ=60)

                                    GTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCC                                                           <  SRR4302540.4587033/94‑1 (MQ=60)

                                    GTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCC                                                           >  SRR4302540.6077863/1‑94 (MQ=60)

                                      GCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGA                                                         <  SRR4302540.5727038/94‑1 (MQ=60)

                                      GCGTTATATTTTTTGACAGGCTAATAAACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGA                                                         >  SRR4302540.2129827/1‑94 (MQ=60)

                                       CGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGAT                                                        >  SRR4302540.5192729/1‑94 (MQ=60)

                                       CGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGAATGACTAACCTTAAAGAAAAGCCGAT                                                        >  SRR4302540.3104380/1‑94 (MQ=60)

                                        GTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATA                                                       >  SRR4302540.7822547/1‑94 (MQ=60)

                                        GTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATA                                                       >  SRR4302540.6820112/1‑94 (MQ=60)

                                        GTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATA                                                       <  SRR4302540.5256853/94‑1 (MQ=60)

                                        GTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATA                                                       >  SRR4302540.796325/1‑94 (MQ=60)

                                        GTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATA                                                       >  SRR4302540.3903155/1‑94 (MQ=60)

                                        GTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATA                                                       >  SRR4302540.3803850/1‑94 (MQ=60)

                                        GTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATA                                                       >  SRR4302540.8382292/1‑94 (MQ=60)

                                         TTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATAA                                                      >  SRR4302540.1368451/1‑94 (MQ=60)

                                         TTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATAA                                                      >  SRR4302540.3611268/1‑94 (MQ=60)

                                          TTTATGTTTTGACAGGGTAATAAACGTGATCCACCGCACGCTTGGTCGCCCGCCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATAAG                                                     >  SRR4302540.7812907/1‑94 (MQ=60)

                                          TATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATAAT                                                     >  SRR4302540.8479110/1‑94 (MQ=60)

                                          TATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATAAT                                                     >  SRR4302540.5104610/1‑94 (MQ=60)

                                           ATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATAATT                                                    <  SRR4302540.7371015/94‑1 (MQ=60)

                                           ATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATAATT                                                    <  SRR4302540.7245533/94‑1 (MQ=60)

                                           ATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGAATGACTACCCTTAAACAAAAGCCGATAATT                                                    <  SRR4302540.6794091/94‑1 (MQ=60)

                                            TATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATAATTA                                                   <  SRR4302540.7121214/94‑1 (MQ=60)

                                            TATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATAATTA                                                   <  SRR4302540.8686996/94‑1 (MQ=60)

                                            TATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATAATTA                                                   <  SRR4302540.6290160/94‑1 (MQ=60)

                                               TTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATAATTAGCG                                                <  SRR4302540.1886472/94‑1 (MQ=60)

                                                TTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATAATTAGCGA                                               <  SRR4302540.1174285/94‑1 (MQ=60)

                                                 TTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATAATTAGCGAC                                              <  SRR4302540.7543534/94‑1 (MQ=60)

                                                 TTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATAATTAGCGAC                                              <  SRR4302540.3772460/94‑1 (MQ=60)

                                                  TGGACAGGTTAAGAAACGTGATCCACCGCACGCTTTGGCGCCCGCCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATAATTAGCGACG                                             <  SRR4302540.9725138/94‑1 (MQ=60)

                                                    GACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCGCCGGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATAATTAGCGACGAA                                           >  SRR4302540.6730129/1‑94 (MQ=60)

                                                    GACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATAATTAGCGACGAA                                           >  SRR4302540.3826352/1‑94 (MQ=60)

                                                    GACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATAATTAGCGACGAA                                           >  SRR4302540.3578259/1‑94 (MQ=60)

                                                     ACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATAATTAGCGACGAAT                                          <  SRR4302540.3264635/94‑1 (MQ=60)

                                                     ACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATAATTAGCGACGAAT                                          >  SRR4302540.2276920/1‑94 (MQ=60)

                                                     ACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATAATTAGCGACGAAT                                          >  SRR4302540.1127806/1‑94 (MQ=60)

                                                      CAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATAATTAGCGACGAATT                                         <  SRR4302540.4417241/94‑1 (MQ=60)

                                                       AGGTTAATAAACGTGATCGACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTT                                        >  SRR4302540.5944008/1‑94 (MQ=60)

                                                       AGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTT                                        >  SRR4302540.3782278/1‑94 (MQ=60)

                                                       AGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTT                                        <  SRR4302540.449560/94‑1 (MQ=60)

                                                       AGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTT                                        <  SRR4302540.8772923/94‑1 (MQ=60)

                                                        GGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTC                                       <  SRR4302540.5271472/94‑1 (MQ=60)

                                                        GGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTC                                       <  SRR4302540.7339358/94‑1 (MQ=60)

                                                        GGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTC                                       >  SRR4302540.6335719/1‑94 (MQ=60)

                                                        GGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTC                                       >  SRR4302540.676748/1‑94 (MQ=60)

                                                        GGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTC                                       >  SRR4302540.2123096/1‑94 (MQ=60)

                                                        GGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTC                                       >  SRR4302540.6718875/1‑94 (MQ=60)

                                                         GTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCG                                      >  SRR4302540.3512616/1‑94 (MQ=60)

                                                         GTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCACCAGGCCGAGCGAATGACTACCCTTAAAGAAAAGCCGATAATTAGCGACGAATgtgg                                      >  SRR4302540.4590874/1‑90 (MQ=60)

                                                            AATAAACGTGATCCCCCGCAGGCTTTGTCCCCCGCCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAG                                   <  SRR4302540.2629689/94‑1 (MQ=60)

                                                            AATAAACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAG                                   <  SRR4302540.1687667/94‑1 (MQ=60)

                                                            AATAAACGTGATCCACCGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAG                                   <  SRR4302540.5987654/94‑1 (MQ=60)

                                                             ATAAACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGG                                  <  SRR4302540.7097650/94‑1 (MQ=60)

                                                             ATAAACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGG                                  >  SRR4302540.898540/1‑94 (MQ=60)

                                                             ATAAACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGG                                  >  SRR4302540.2035876/1‑94 (MQ=60)

                                                             ATAAACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGG                                  <  SRR4302540.4168799/94‑1 (MQ=60)

                                                              TAAACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGT                                 >  SRR4302540.8007332/1‑94 (MQ=60)

                                                              TAAACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGT                                 >  SRR4302540.5331606/1‑94 (MQ=60)

                                                               AAACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTT                                <  SRR4302540.8728084/94‑1 (MQ=60)

                                                               AAACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTT                                <  SRR4302540.2615264/94‑1 (MQ=60)

                                                               AAACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTT                                <  SRR4302540.7626766/94‑1 (MQ=60)

                                                                AAGGTGATCCGCCGCACGCTTTGTCGCCCGCCAGGCGGAGCGAATGACTGCCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTG                               <  SRR4302540.4224666/94‑1 (MQ=60)

                                                                AACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTG                               >  SRR4302540.4780753/1‑94 (MQ=60)

                                                                 ACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGG                              <  SRR4302540.4349364/94‑1 (MQ=60)

                                                                 ACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGG                              <  SRR4302540.3550277/94‑1 (MQ=60)

                                                                 ACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGG                              <  SRR4302540.4911689/94‑1 (MQ=60)

                                                                 ACGTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGG                              >  SRR4302540.4613841/1‑94 (MQ=60)

                                                                   GTGATCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGAT                            >  SRR4302540.5362986/1‑94 (MQ=60)

                                                                    TGATCCCCCGCACGCTTTGTCGCCCGCCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATAATTAGAGACGAATTTCGGAGGTTGGATC                           <  SRR4302540.1799294/94‑1 (MQ=60)

                                                                    TGATCCACCGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATC                           <  SRR4302540.2183705/94‑1 (MQ=60)

                                                                     GATCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCC                          <  SRR4302540.7571564/94‑1 (MQ=60)

                                                                     GATCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCC                          <  SRR4302540.1391231/94‑1 (MQ=60)

                                                                       TCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCCTT                        <  SRR4302540.1103171/94‑1 (MQ=60)

                                                                       TCCACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCCTT                        <  SRR4302540.8272080/94‑1 (MQ=60)

                                                                       ACCACCGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACTACCCTTAAAGAAAAACCGATAATTAGCGACGAATTTCGGAGGTTGGATCCTT                        <  SRR4302540.9950294/94‑1 (MQ=60)

                                                                        CCACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGAATGACTACCCTTCAAGAAAAGCCGATAATTAGCCACGAATTTCGGAGGTTGTGTCCTTA                       >  SRR4302540.782975/1‑94 (MQ=60)

                                                                         CACCGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCCTTAT                      >  SRR4302540.4668180/1‑94 (MQ=60)

                                                                          CCCGCACGCTTTGTCGCCCGCCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCCTTATG                     <  SRR4302540.2153707/94‑1 (MQ=60)

                                                                          ACCGCCCGCTTTGTCGCCCGCCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCCTTATG                     <  SRR4302540.5166305/94‑1 (MQ=60)

                                                                          ACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCCTTATG                     >  SRR4302540.7212445/1‑94 (MQ=60)

                                                                          ACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCCTTATG                     <  SRR4302540.1147140/94‑1 (MQ=60)

                                                                          ACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCCTTATG                     >  SRR4302540.7299687/1‑94 (MQ=60)

                                                                          ACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCCTTATG                     >  SRR4302540.6978169/1‑94 (MQ=60)

                                                                          ACCGCACGCTTTGTCGCCCGCCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCCTTATG                     >  SRR4302540.4636805/1‑94 (MQ=60)

                                                                          ACCGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCCTTATG                     <  SRR4302540.6457341/94‑1 (MQ=60)

                                                                          ACCGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCCTTATG                     <  SRR4302540.6457342/94‑1 (MQ=60)

                                                                           CCGCGCTCTTTGTCGCCCGCCAGGCGGAGCAAATGACTACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCCTTATGC                    <  SRR4302540.6874756/94‑1 (MQ=60)

                                                                           CCGCACGCTTTGTCGCCCGCCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCCTTATGC                    <  SRR4302540.1568209/94‑1 (MQ=60)

                                                                           CCGCACGCTTTGTCGCCCGCCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCCTTATGC                    <  SRR4302540.9471111/94‑1 (MQ=60)

                                                                             GCACGCTTTGTCGCCCGCCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCCTTATGCTC                  >  SRR4302540.3371914/1‑94 (MQ=60)

                                                                             GCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCCTTATGCTC                  >  SRR4302540.6121304/1‑94 (MQ=60)

                                                                              CACGCTTTGTCGCCCGCCAGGCGGAGCGAATGACTCCCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCCTTATGCTCA                 <  SRR4302540.1966596/94‑1 (MQ=60)

                                                                              CACGCTTTGTCGCCCGCCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCCTTATGCTCA                 >  SRR4302540.10135024/1‑94 (MQ=60)

                                                                               ACGCTTTGTCGCCCGCCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCCTTATGCTCAA                <  SRR4302540.6283534/94‑1 (MQ=60)

                                                                               ACGCTTTGTCGCCCGCCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCCTTATGCTCAA                >  SRR4302540.1171463/1‑94 (MQ=60)

                                                                               ACGCTTTGTCGCCCGCCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCCTTATGCTCAA                >  SRR4302540.3427669/1‑94 (MQ=60)

                                                                                CGCTTTGTCGCCCGCCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCCTTATGCTCAAT               >  SRR4302540.2029858/1‑94 (MQ=60)

                                                                                CGCTTTGTCGCCCGCCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCCTTATGCTCAAT               <  SRR4302540.6151064/94‑1 (MQ=60)

                                                                                 GCTTTGTCGCCCGCCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCCTTATGCTCAATC              >  SRR4302540.6916060/1‑94 (MQ=60)

                                                                                  CTTTGTCGCCCGCCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCCTTATGCTCAATCA             <  SRR4302540.7749396/94‑1 (MQ=60)

                                                                                  CTTTGTCGCCCGCCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCCTTATGCTCAATCA             <  SRR4302540.8746842/94‑1 (MQ=60)

                                                                                  CTTTGTCGCCCGCCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCCTTATGCTCAATCA             <  SRR4302540.1272793/94‑1 (MQ=60)

                                                                                  CTTTGTCGCCCGCCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGAATCCTTATGCTCAATCA             <  SRR4302540.4060328/94‑1 (MQ=60)

                                                                                         GCCCGCCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCCTTATGCTCAATCAGAAAATT      <  SRR4302540.8526411/94‑1 (MQ=60)

                                                                                           CCGCCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCCTTATGCTCAATCAGAAAATTCA    <  SRR4302540.5928135/94‑1 (MQ=60)

                                                                                           CCGCCAGGCGGAGCGAATGACTACCCGTAAAGAAAAGCCGATAAGTAGCGACGAAGTTCGGAGGTTGGAGCCCTAGGCTCAATCAGAAAAcaca    >  SRR4302540.7802443/1‑90 (MQ=60)

                                                                                           CCACCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCCTTATGCTCAATCAGAAAATTCA    <  SRR4302540.915121/94‑1 (MQ=60)

                                                                                            CGCCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCCTTATGCTCAATCAGAAAATTCAA   >  SRR4302540.1221864/1‑94 (MQ=60)

                                                                                             GCCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCCTTATGCTCAATCAGAAAATTCAAA  <  SRR4302540.1728852/94‑1 (MQ=60)

                                                                                             GCCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCCTTATGCTCAATCAGAAAATTCAAA  <  SRR4302540.9711654/94‑1 (MQ=60)

                                                                                             GCCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCCTTATGCTCAATCAGAAAATTCAAA  >  SRR4302540.4703488/1‑94 (MQ=60)

ACCAAATCGGTATTTTTATAAATTCCATTGATATTAGTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCCTTATGCTCAATCAGAAAATTCAAA  >  NC_000913/3667057‑3667243

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 7 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`