Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	1548	369.5	20095359	96.9%	19472402	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,679,306	T→C	S89G (AGC→GGC)	yhjJ ←	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,679,306	0	T	C	99.8%	1378.0 / NA	433	S89G (AGC→GGC)	yhjJ	hypothetical protein
Reads supporting (aligned to +/- strand): ref base T (0/1); new base C (207/225); total (207/226)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 449 total aligned reads displayed.

CATAAGAGACAATTACCGGCGGCATCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCTTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTCGGCGAGCGAACCGGTATTAACCAGCAGGCGAA  >  NC_000913/3679216‑3679395

cATAAGAGACAATTACCGGCGGCATCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCctt                                                                                         <  1:7186257/93‑1 (MQ=255)

  tgagagACAATTACCGGCGGCATCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGc                                                                                       >  2:1654619/3‑93 (MQ=255)

  tAAGAGACAATTACCGGCGGCATCGGGCGGTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGc                                                                                       >  1:9885415/1‑93 (MQ=255)

   aaGAGACAATTCCCGGCGGCATCGGGCTTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCg                                                                                      <  2:8534062/93‑1 (MQ=255)

   aaGAGACAATTACCGGCGGCATCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCg                                                                                      <  2:589850/93‑1 (MQ=255)

   aaGAGACAATTACCGGCGGCATCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCg                                                                                      >  2:3701240/1‑93 (MQ=255)

     gagaCAATTACCGGCGGCATCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGtt                                                                                    >  2:9789850/1‑93 (MQ=255)

       gaCAATTACCGGCGGCATCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAg                                                                                  >  1:9085329/1‑93 (MQ=255)

        aCAATTGCCGGCGGCATCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAgc                                                                                 <  1:1604253/93‑1 (MQ=255)

        aCAATTACCGGCGGCATCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAgc                                                                                 >  1:1964610/1‑93 (MQ=255)

           aTTACCGGCGGCATCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCa                                                                              >  1:6782498/1‑93 (MQ=255)

            ttcccGGCGGCATCGGGCGTTTAGGGGCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCaa                                                                             <  2:9697141/90‑1 (MQ=255)

             tACCGGCGGCATCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAAt                                                                            <  1:9287275/93‑1 (MQ=255)

              aCCGGCGGCATCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATa                                                                           <  2:8399886/93‑1 (MQ=255)

              aCCGGCGGCATCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATa                                                                           <  2:7609475/93‑1 (MQ=255)

               cgggcggcACCGGGCGTGTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATAc                                                                          <  2:7313650/91‑1 (MQ=255)

               ccGGCGGCATCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATAc                                                                          <  1:3325677/93‑1 (MQ=255)

                cggcggCATCTGGCGTGTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACg                                                                         <  2:1408859/93‑1 (MQ=255)

                cggcggCATCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCGTGCGTTAGCGCAATACg                                                                         >  1:8965420/1‑93 (MQ=255)

                 ggcggcATCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGa                                                                        <  2:5666874/93‑1 (MQ=255)

                 ggcggcATCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGa                                                                        <  2:2548876/93‑1 (MQ=255)

                 ggcggcATCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATAAGa                                                                        <  2:2846146/93‑1 (MQ=255)

                  gcggcATCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCCAGGCCACCGCCTTGCGTTAGCGCAATACGAg                                                                       >  1:3694435/1‑93 (MQ=255)

                  gcggcATCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAg                                                                       >  1:5893432/1‑93 (MQ=255)

                  gcggcATCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAg                                                                       >  2:8655901/1‑93 (MQ=255)

                   cggcATCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAgg                                                                      <  1:239343/93‑1 (MQ=255)

                   cggcATCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAgg                                                                      <  1:2960376/93‑1 (MQ=255)

                   cggcATCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAgg                                                                      <  1:274391/93‑1 (MQ=255)

                   cggcATCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAgg                                                                      <  1:7272428/93‑1 (MQ=255)

                   cggcATCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAgg                                                                      <  1:4153362/93‑1 (MQ=255)

                     gcATCGGGCGTTTAGGGTCGATCGCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGa                                                                    <  2:5503326/93‑1 (MQ=255)

                     gcATCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGa                                                                    <  1:397225/93‑1 (MQ=255)

                     gcATCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGa                                                                    >  1:3072706/1‑93 (MQ=255)

                     gcATCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGa                                                                    <  2:8202110/93‑1 (MQ=255)

                      cATCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGAt                                                                   <  1:5812246/93‑1 (MQ=255)

                       aTCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATg                                                                  <  1:8077218/93‑1 (MQ=255)

                       aTCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATg                                                                  >  2:5006384/1‑93 (MQ=255)

                        tCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATgg                                                                 >  2:3137781/1‑93 (MQ=255)

                          gggCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCg                                                               >  1:6131066/1‑93 (MQ=255)

                          gggCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCg                                                               >  1:4461813/1‑93 (MQ=255)

                             cGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGa                                                            >  1:4113176/1‑93 (MQ=255)

                              gTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGAc                                                           <  1:7514323/93‑1 (MQ=255)

                              gTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGCGAc                                                           >  2:3237156/1‑93 (MQ=255)

                               tttAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACt                                                          >  1:4947735/1‑93 (MQ=255)

                                ttAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTg                                                         >  2:5390482/1‑93 (MQ=255)

                                 tAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGt                                                        >  1:4348643/1‑93 (MQ=255)

                                  aGGTTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTa                                                       <  1:9501986/93‑1 (MQ=255)

                                   gggTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCACTACGAGGGATGGCGTGACTGTaa                                                      >  1:4720113/1‑93 (MQ=255)

                                     gTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAAcc                                                    >  1:6879113/1‑93 (MQ=255)

                                     gTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAAcc                                                    >  2:6306419/1‑93 (MQ=255)

                                     gTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAAcc                                                    >  2:679529/1‑93 (MQ=255)

                                       gtgtCCCCTGCTGCCACAAAGAACGCGCCTGTGCTGGGTCAAGGCCACCGCCTTGCGTTAGCGCAATAGGAGGGATGGCGTGACTGTAACCGc                                                  <  2:4585585/90‑1 (MQ=255)

                                        gATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGct                                                 >  2:229595/1‑93 (MQ=255)

                                         aTCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGctc                                                >  2:5302388/1‑93 (MQ=255)

                                          tCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGctct                                               >  1:5522512/1‑93 (MQ=255)

                                             ccTGCTGCCACAATGAACGCGCCTGTGCTGCGCCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGAGGGCGTGACTGTAACCCCTCtgtg                                            >  1:6245870/1‑92 (MQ=255)

                                              ctgctgCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCtgttg                                           <  2:10019815/93‑1 (MQ=255)

                                              cggctgcCACAATGAACGCGCCTGTGCTGCCTCAAGGCCGCCGCCTTGCGTTAGTGCAATACGAGGGATGGCGTGACTGTAACCGCTCtgttg                                           <  2:1502323/91‑1 (MQ=255)

                                                gctgcCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTtgtg                                         >  1:2183694/1‑93 (MQ=255)

                                                  tgcCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTa                                       <  1:4279212/93‑1 (MQ=255)

                                                  tgcCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTa                                       >  2:891258/1‑93 (MQ=255)

                                                  tgcCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTa                                       <  1:1739279/93‑1 (MQ=255)

                                                  tgcCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTa                                       <  1:7812432/93‑1 (MQ=255)

                                                   gcCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTAc                                      <  2:9661368/93‑1 (MQ=255)

                                                    ccACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACt                                     <  2:9439858/93‑1 (MQ=255)

                                                    ccACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACt                                     <  1:8512863/93‑1 (MQ=255)

                                                    ccACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACt                                     <  1:3489720/93‑1 (MQ=255)

                                                     cacaATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACtt                                    >  1:8336114/1‑93 (MQ=255)

                                                      acaATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACttt                                   <  1:3147334/93‑1 (MQ=255)

                                                       caATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTc                                  <  2:1153270/93‑1 (MQ=255)

                                                       caATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTc                                  <  1:7881577/93‑1 (MQ=255)

                                                          tGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTCGgc                               >  2:1806648/1‑93 (MQ=255)

                                                            aaCGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTCGgcga                             >  2:7075493/1‑93 (MQ=255)

                                                                 gcCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTCGGCGAGCGaa                        <  2:582041/93‑1 (MQ=255)

                                                                 gcCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTCGGCGAGCGaa                        <  1:6319664/93‑1 (MQ=255)

                                                                 gcCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTCGGCGAGCGaa                        <  2:6741752/93‑1 (MQ=255)

                                                                   cTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTCGGCGAGCGAAcc                      >  1:6488671/1‑93 (MQ=255)

                                                                    tgtgCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTCGGCGAGCGAACCg                     >  2:5196828/1‑93 (MQ=255)

                                                                    tgtgCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTCGGCGAGCGAACCg                     >  1:7356433/1‑93 (MQ=255)

                                                                     gtgCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTCGGCGAGCGAACCgg                    >  2:8605154/1‑93 (MQ=255)

                                                                     gtgCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTCGGCGAGCGAACCgg                    <  1:1186335/93‑1 (MQ=255)

                                                                     gtgCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTCGGCGAGCGAACCgg                    >  2:5989313/1‑93 (MQ=255)

                                                                     gtgCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTCGGCGAGCGAACCgg                    >  1:8637514/1‑93 (MQ=255)

                                                                       gctgcGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTCGGCGAGCGAACCGGTa                  <  2:6128549/93‑1 (MQ=255)

                                                                           cGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTCGGCGAGCGAACCGGTATTaa              <  1:7055592/93‑1 (MQ=255)

                                                                            gTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTCGGCGAGCGAACCGGTATTAAc             >  2:7495256/1‑93 (MQ=255)

                                                                             tCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTCGGCGAGCGAACCGGTATTAAcc            <  2:2113617/93‑1 (MQ=255)

                                                                             tCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTCGGCGAGCGAACCGGTATTAAcc            <  2:2942091/93‑1 (MQ=255)

                                                                             tCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTCGGCGAGCGAACCGGTATTAAcc            <  2:7947148/93‑1 (MQ=255)

                                                                              cAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTCGGCGAGCGAACCGGTATTAACca           >  1:8404986/1‑93 (MQ=255)

                                                                                 ggCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTCGGCGAGCGAACCGGTATTAACcagca        >  2:4882500/1‑93 (MQ=255)

                                                                                 ggCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTCGGCGAGCGAACCGGTATTAACcagca        >  1:1017198/1‑93 (MQ=255)

                                                                                    cACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTCGGCGAGCGAACCGGTATTAACCAGCAGGc     >  2:4413464/1‑93 (MQ=255)

                                                                                    cACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTCGGCGAGCGAACCGGTATTAACCAGCAGGc     >  2:4198608/1‑93 (MQ=255)

                                                                                    cACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTCGGCGAGCGAACCGGTATTAACCAGCAGGc     >  2:6003988/1‑93 (MQ=255)

                                                                                    cACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTCGGCGAGCGAACCGGTATTAACCAGCAGGc     >  2:6439435/1‑93 (MQ=255)

                                                                                     cccGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTCGGCGAGCGAACCGGTATTAACCAGCAGGCg    <  1:5394230/92‑1 (MQ=255)

                                                                                     aCCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTCGGCGAGCGAACCGGTATTAACCAGCAGGCg    >  1:130296/1‑93 (MQ=255)

                                                                                      ccGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTCGGCGAGCGAACCGGTATTAACCAGCAGGCGa   <  2:9172101/93‑1 (MQ=255)

                                                                                       cGCCTTGCGTTAGCGGAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTCGGCGAGCGAACCGGTATTAACCAGCAGGCGaa  <  2:2698060/93‑1 (MQ=255)

CATAAGAGACAATTACCGGCGGCATCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCTTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTCGGCGAGCGAACCGGTATTAACCAGCAGGCGAA  >  NC_000913/3679216‑3679395

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 19 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output Only 200 of 240 total aligned reads displayed.

TGTCATAAGAGACAATTACCGGCGGCATCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCTTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTCGGCGAGCGAACCGGTATTAACCAGCAGGCGAATTTC  >  NC_000913/3679213‑3679399

TGTCATAAGAGACAATTGCCGGCGGCATCGGGCGTTTCGGGTCGACCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCC                                                                                               <  SRR4302540.2363913/94‑1 (MQ=60)

 GTCATAAGAGACAATTACCGGCGGCATCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCT                                                                                              <  SRR4302540.8050958/94‑1 (MQ=60)

 GTCATAAGAGACAATTACCGGCGGCATCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCT                                                                                              >  SRR4302540.142676/1‑94 (MQ=60)

  TCATAAGAGACAATTGCCGGCGGCATCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTT                                                                                             <  SRR4302540.2697556/94‑1 (MQ=60)

  TCATAAGAGACAATTACCGGCGGCATCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTT                                                                                             <  SRR4302540.9266314/94‑1 (MQ=60)

   CATAAGAGACAATTACCGGCGGCATCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTG                                                                                            <  SRR4302540.5172461/94‑1 (MQ=60)

   CATAAGAGACAATTACCGGCGGCATCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTG                                                                                            <  SRR4302540.7266363/94‑1 (MQ=60)

    ATAAGAGACAATTACCGGCGGCATCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGC                                                                                           >  SRR4302540.1746580/1‑94 (MQ=60)

    ATAAGAGACAATTACCGGCGGCATCGGGCGGTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGC                                                                                           >  SRR4302540.10000838/1‑94 (MQ=60)

     TAAGAGACAATTACCGGCGGCATCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCG                                                                                          >  SRR4302540.8160452/1‑94 (MQ=60)

     TAAGAGACAATTACCGGCGGCATCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCG                                                                                          >  SRR4302540.8707542/1‑94 (MQ=60)

      AAGAGACAATTACCGGCGGCATCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGT                                                                                         >  SRR4302540.359658/1‑94 (MQ=60)

      AAGAGACAATTACCGGCGGCATCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGT                                                                                         >  SRR4302540.7424011/1‑94 (MQ=60)

       AGAGACAATTACCGGCGGCATCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTT                                                                                        <  SRR4302540.6379051/94‑1 (MQ=60)

        GAGACAATTACCGGCGGCATCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTA                                                                                       <  SRR4302540.2054499/94‑1 (MQ=60)

         AGACAATTACCGGCGGCATCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAG                                                                                      <  SRR4302540.4337085/94‑1 (MQ=60)

         AGACAATTACCGGCGGCATCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAG                                                                                      >  SRR4302540.9194483/1‑94 (MQ=60)

         AGACAATTACCGGCGGCATCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAG                                                                                      <  SRR4302540.9841685/94‑1 (MQ=60)

         AGACAATTACCGGCGGCATCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAG                                                                                      <  SRR4302540.1178685/94‑1 (MQ=60)

         AGACAATTACCGGCGGCATCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAG                                                                                      <  SRR4302540.4498818/94‑1 (MQ=60)

         AGACAATTACCGGCGGCATCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAG                                                                                      >  SRR4302540.622495/1‑94 (MQ=60)

         AGACAATTACCGGCGGCATCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAG                                                                                      <  SRR4302540.4760579/94‑1 (MQ=60)

         AGACAATGTCCGGCGGCATCGGGCGTTTAGGTGAGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAG                                                                                      <  SRR4302540.4498817/94‑1 (MQ=60)

         AGAAAGTTACCGGCGGCATCGGGCGTTTAGGGTAGATCCCTTGCTGCCACAATGAACGCGCGTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAG                                                                                      <  SRR4302540.9841684/94‑1 (MQ=60)

          GACAATTACCGGCGGCATCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGC                                                                                     >  SRR4302540.1985946/1‑94 (MQ=60)

           ACAATTGCCGGCGGCATCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCG                                                                                    <  SRR4302540.1621805/94‑1 (MQ=60)

            CAATTACCGGCGGCATCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGC                                                                                   >  SRR4302540.7196496/1‑94 (MQ=60)

             AATTACCGGCGGCATCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCA                                                                                  >  SRR4302540.6857498/1‑94 (MQ=60)

              ATTACCGGCGGCATCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAA                                                                                 <  SRR4302540.4164069/94‑1 (MQ=60)

               TTACCGGCGGCATCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCCTGCGTTAGCGCAAA                                                                                >  SRR4302540.9031322/1‑94 (MQ=60)

                TACCGGCGGCATCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATA                                                                               <  SRR4302540.9398259/94‑1 (MQ=60)

                 tcgGGCGGCATCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATAC                                                                              <  SRR4302540.2218144/91‑1 (MQ=60)

                 TCCGGCGGCATCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATAC                                                                              <  SRR4302540.339104/94‑1 (MQ=60)

                 ACCGGCGGCATCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATAC                                                                              <  SRR4302540.5120369/94‑1 (MQ=60)

                 ACCGGCGGCATCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATAC                                                                              <  SRR4302540.7217550/94‑1 (MQ=60)

                 ACCGGCGGCATCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATAC                                                                              >  SRR4302540.6730777/1‑94 (MQ=60)

                 ACCGGCGGCATCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATAC                                                                              <  SRR4302540.717447/94‑1 (MQ=60)

                 ACCGGCGGCATCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATAC                                                                              <  SRR4302540.4191620/94‑1 (MQ=60)

                 ACCGGCGGCATCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATAC                                                                              <  SRR4302540.7299548/94‑1 (MQ=60)

                  CCGGCGGCATCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACG                                                                             <  SRR4302540.3362170/94‑1 (MQ=60)

                  CCGGCGGCATCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCGTGCGTTAGCGCAATACG                                                                             >  SRR4302540.9071652/1‑94 (MQ=60)

                   CGGCGGCATCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGA                                                                            >  SRR4302540.219971/1‑94 (MQ=60)

                   CGGCGGCATCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGA                                                                            <  SRR4302540.9577103/94‑1 (MQ=60)

                    GGCGGCATCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCCAGGCCACCGCCTTGCGTTAGCGCAATACGAG                                                                           >  SRR4302540.3734780/1‑94 (MQ=60)

                    GGCGGCATCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAG                                                                           >  SRR4302540.3426174/1‑94 (MQ=60)

                    GGCGGCATCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAG                                                                           >  SRR4302540.5958529/1‑94 (MQ=60)

                    GGCGGCATCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAG                                                                           <  SRR4302540.3032994/94‑1 (MQ=60)

                     GCGGCATCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGG                                                                          <  SRR4302540.770956/94‑1 (MQ=60)

                     GCGGCATCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGG                                                                          <  SRR4302540.1235232/94‑1 (MQ=60)

                      CGGCATCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGG                                                                         >  SRR4302540.6805972/1‑94 (MQ=60)

                      CGGCATCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGG                                                                         <  SRR4302540.277091/94‑1 (MQ=60)

                      CGGCATCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGG                                                                         >  SRR4302540.1179483/1‑94 (MQ=60)

                      CGGCATCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGG                                                                         <  SRR4302540.241661/94‑1 (MQ=60)

                      CGGCATCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGG                                                                         <  SRR4302540.6048233/94‑1 (MQ=60)

                      CGGCATCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGG                                                                         <  SRR4302540.4198350/94‑1 (MQ=60)

                      CGGCATCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGG                                                                         <  SRR4302540.7353581/94‑1 (MQ=60)

                       GGCATCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGA                                                                        >  SRR4302540.3106418/1‑94 (MQ=60)

                       GGCATCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGA                                                                        <  SRR4302540.826927/94‑1 (MQ=60)

                       GGCATCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGA                                                                        >  SRR4302540.1898308/1‑94 (MQ=60)

                        GCATCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGAT                                                                       <  SRR4302540.401345/94‑1 (MQ=60)

                        GCATCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGAT                                                                       <  SRR4302540.2876366/94‑1 (MQ=60)

                         CATCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATG                                                                      <  SRR4302540.5876485/94‑1 (MQ=60)

                         CATCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATG                                                                      >  SRR4302540.8136423/1‑94 (MQ=60)

                         CATCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATG                                                                      >  SRR4302540.9501428/1‑94 (MQ=60)

                         CATCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATG                                                                      <  SRR4302540.5577635/94‑1 (MQ=60)

                          ATCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATTAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGG                                                                     >  SRR4302540.1866445/1‑94 (MQ=60)

                          ATCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGG                                                                     >  SRR4302540.4544585/1‑94 (MQ=60)

                          ATCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGG                                                                     <  SRR4302540.8170961/94‑1 (MQ=60)

                          ATCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGG                                                                     <  SRR4302540.5570965/94‑1 (MQ=60)

                           TCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGC                                                                    <  SRR4302540.6298037/94‑1 (MQ=60)

                            CGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCG                                                                   >  SRR4302540.4106205/1‑94 (MQ=60)

                            CGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCG                                                                   >  SRR4302540.6337074/1‑94 (MQ=60)

                            CGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCG                                                                   >  SRR4302540.6199353/1‑94 (MQ=60)

                             GGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGT                                                                  >  SRR4302540.3857212/1‑94 (MQ=60)

                             GGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGT                                                                  >  SRR4302540.7968156/1‑94 (MQ=60)

                              GGCGTTTAGGGTCGACCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTG                                                                 <  SRR4302540.3209095/94‑1 (MQ=60)

                               GCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGA                                                                >  SRR4302540.4157586/1‑94 (MQ=60)

                               GCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGA                                                                <  SRR4302540.7540048/94‑1 (MQ=60)

                                CGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGAC                                                               >  SRR4302540.1683818/1‑94 (MQ=60)

                                 GTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCTCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACT                                                              >  SRR4302540.785826/1‑94 (MQ=60)

                                 GTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACT                                                              <  SRR4302540.8519575/94‑1 (MQ=60)

                                 GTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACT                                                              >  SRR4302540.5001166/1‑94 (MQ=60)

                                 GTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACT                                                              >  SRR4302540.4171763/1‑94 (MQ=60)

                                 GTTTAGGGTCGATCCCCTGCTACCACAAAGAACGCGCCTGTGCTGCGTCAAGGCCACGGCCTTGCGTAAGCGCAATACGAGGGATGGCGTCACT                                                              >  SRR4302540.3275675/1‑94 (MQ=60)

                                  TTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTG                                                             <  SRR4302540.4074809/94‑1 (MQ=60)

                                   TTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGT                                                            >  SRR4302540.4395954/1‑94 (MQ=60)

                                   TTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGT                                                            <  SRR4302540.8242158/94‑1 (MQ=60)

                                   TTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGT                                                            >  SRR4302540.2993252/1‑94 (MQ=60)

                                     AGGTTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAA                                                          <  SRR4302540.9614578/94‑1 (MQ=60)

                                     AGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCACTACGAGGGATGGCGTGACTGTAA                                                          >  SRR4302540.4770532/1‑94 (MQ=60)

                                     AGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAA                                                          <  SRR4302540.735872/94‑1 (MQ=60)

                                     AGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAA                                                          >  SRR4302540.7277950/1‑94 (MQ=60)

                                     AGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAA                                                          >  SRR4302540.3683650/1‑94 (MQ=60)

                                       GGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACC                                                        >  SRR4302540.6955363/1‑94 (MQ=60)

                                         TCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGC                                                      <  SRR4302540.5921328/94‑1 (MQ=60)

                                          CGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCT                                                     >  SRR4302540.7651588/1‑94 (MQ=60)

                                          CGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCT                                                     >  SRR4302540.7101440/1‑94 (MQ=60)

                                           GATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTC                                                    >  SRR4302540.3466873/1‑94 (MQ=60)

                                           GATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTC                                                    >  SRR4302540.4530622/1‑94 (MQ=60)

                                            ATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCT                                                   >  SRR4302540.4745936/1‑94 (MQ=60)

                                            ATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCT                                                   >  SRR4302540.3115593/1‑94 (MQ=60)

                                            ATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGGCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCT                                                   <  SRR4302540.9203596/94‑1 (MQ=60)

                                             TCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTG                                                  >  SRR4302540.1227780/1‑94 (MQ=60)

                                               CCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGCCTGTGACCGCTCTGTT                                                >  SRR4302540.8532848/1‑94 (MQ=60)

                                                CCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAATGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTG                                               >  SRR4302540.1816772/1‑94 (MQ=60)

                                                CCTGCTGCCACAATGAACGCGCATGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTG                                               <  SRR4302540.8666100/94‑1 (MQ=60)

                                                 CTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGT                                              >  SRR4302540.8494295/1‑94 (MQ=60)

                                                  TGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTG                                             >  SRR4302540.968889/1‑94 (MQ=60)

                                                  TGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTG                                             >  SRR4302540.2207265/1‑94 (MQ=60)

                                                  TGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTG                                             >  SRR4302540.4257563/1‑94 (MQ=60)

                                                    CTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTA                                           >  SRR4302540.10105442/1‑94 (MQ=60)

                                                    CTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTA                                           >  SRR4302540.8318938/1‑94 (MQ=60)

                                                     TGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCTACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTAC                                          <  SRR4302540.6280678/94‑1 (MQ=60)

                                                     TGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTAC                                          <  SRR4302540.7903730/94‑1 (MQ=60)

                                                     TGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTAC                                          <  SRR4302540.1758086/94‑1 (MQ=60)

                                                     TGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTAC                                          <  SRR4302540.4325756/94‑1 (MQ=60)

                                                      TCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACT                                         <  SRR4302540.8585445/94‑1 (MQ=60)

                                                      GCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACT                                         >  SRR4302540.9385413/1‑94 (MQ=60)

                                                      GCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACT                                         <  SRR4302540.3166998/94‑1 (MQ=60)

                                                      GCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACT                                         >  SRR4302540.5365122/1‑94 (MQ=60)

                                                      GCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGGTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACT                                         <  SRR4302540.2845951/94‑1 (MQ=60)

                                                       CCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTT                                        <  SRR4302540.3527726/94‑1 (MQ=60)

                                                       CCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTT                                        >  SRR4302540.8432871/1‑94 (MQ=60)

                                                       CCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTT                                        >  SRR4302540.8432872/1‑94 (MQ=60)

                                                       CCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTT                                        <  SRR4302540.8611797/94‑1 (MQ=60)

                                                       CCACAAGGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTGGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTT                                        <  SRR4302540.2792991/94‑1 (MQ=60)

                                                        CACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTT                                       >  SRR4302540.8841788/1‑94 (MQ=60)

                                                        CACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTT                                       >  SRR4302540.5965461/1‑94 (MQ=60)

                                                        CACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTT                                       >  SRR4302540.7020223/1‑94 (MQ=60)

                                                         ACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTC                                      <  SRR4302540.5648341/94‑1 (MQ=60)

                                                         ACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTC                                      >  SRR4302540.9728085/1‑94 (MQ=60)

                                                         ACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTC                                      <  SRR4302540.6886909/94‑1 (MQ=60)

                                                         ACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTC                                      <  SRR4302540.3181621/94‑1 (MQ=60)

                                                         ACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTC                                      >  SRR4302540.5956434/1‑94 (MQ=60)

                                                          CAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTCG                                     <  SRR4302540.10060904/94‑1 (MQ=60)

                                                          CAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTCG                                     <  SRR4302540.1369832/94‑1 (MQ=60)

                                                          CAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTCG                                     <  SRR4302540.7973608/94‑1 (MQ=60)

                                                           AATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATGCGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTCGG                                    >  SRR4302540.6664049/1‑94 (MQ=60)

                                                           AATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTCGG                                    >  SRR4302540.4240322/1‑94 (MQ=60)

                                                           AATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTCGG                                    <  SRR4302540.413833/94‑1 (MQ=60)

                                                           AATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTCGG                                    >  SRR4302540.4470060/1‑94 (MQ=60)

                                                           AATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTCGG                                    <  SRR4302540.4999943/94‑1 (MQ=60)

                                                            ATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGCGTACTTTCGGC                                   >  SRR4302540.2265291/1‑94 (MQ=60)

                                                             TGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTCGGCG                                  >  SRR4302540.5792418/1‑94 (MQ=60)

                                                              GAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTCGGCGA                                 <  SRR4302540.6433039/94‑1 (MQ=60)

                                                               AACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTCGGCGAG                                <  SRR4302540.9147603/94‑1 (MQ=60)

                                                                ACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTCGGCGAGC                               <  SRR4302540.6941738/94‑1 (MQ=60)

                                                                ACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTCGGCGAGC                               >  SRR4302540.1751489/1‑94 (MQ=60)

                                                                ACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTCGGCGAGC                               <  SRR4302540.7117336/94‑1 (MQ=60)

                                                                 CGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTCGGCGAGCG                              <  SRR4302540.4395059/94‑1 (MQ=60)

                                                                  GCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTCGGCGAGCGA                             <  SRR4302540.7571924/94‑1 (MQ=60)

                                                                    GCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTCGGCGAGCGAAC                           <  SRR4302540.6390040/94‑1 (MQ=60)

                                                                     CCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTCGGCGAGCGAACC                          >  SRR4302540.6560827/1‑94 (MQ=60)

                                                                     CCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTCGGCGAGCGAACC                          <  SRR4302540.7445601/94‑1 (MQ=60)

                                                                      CTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTCGGCGAGCGAACCG                         >  SRR4302540.1421814/1‑94 (MQ=60)

                                                                      CTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTCGGCGAGCGAACCG                         >  SRR4302540.1384141/1‑94 (MQ=60)

                                                                      CTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTCGGCGAGCGAACCG                         <  SRR4302540.7491327/94‑1 (MQ=60)

                                                                      CTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTCGGCGAGCGAACCG                         >  SRR4302540.7438473/1‑94 (MQ=60)

                                                                      CTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTCGGCGAGCGAACCG                         >  SRR4302540.4864394/1‑94 (MQ=60)

                                                                       TGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTCGGCGAGCGAACCGG                        >  SRR4302540.8737850/1‑94 (MQ=60)

                                                                        GTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTCGGCGAGCGAACCGGT                       <  SRR4302540.1198571/94‑1 (MQ=60)

                                                                         TGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTCGGCGAGCGAACCGGGA                      >  SRR4302540.91732/1‑94 (MQ=60)

                                                                         TGCCGCGTCAAGGCCACCGCCTTGCGTGAGCGCAAGACGAGGGATGGCGTGCCTGTAACCGCTCTGTTGTGTACTTTCGGCGAGCGAACCGGTA                      <  SRR4302540.2319864/94‑1 (MQ=60)

                                                                          GCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTCGGCGAGCGAACCGGTAT                     >  SRR4302540.3818582/1‑94 (MQ=60)

                                                                          GCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTCGGCGAGCGAACCGGTAT                     <  SRR4302540.2613113/94‑1 (MQ=60)

                                                                          GCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTCGGCGAGCGAACCGGTAT                     <  SRR4302540.6369694/94‑1 (MQ=60)

                                                                           CTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTCGGCGAGCGCACCGGGATT                    >  SRR4302540.5731817/1‑94 (MQ=60)

                                                                             GCGTCAAGGCCCCCGCTTTGCTTTAGCGCAAGTAGAGGGAGGGCGTGACTGTAACCGCTCTGGTGTGTACTTTCGGCGAGCGAACCGGTATTAA                  <  SRR4302540.3388880/94‑1 (MQ=60)

                                                                              CTTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTCGGCGAGCGAACCGGTATTAAC                 <  SRR4302540.6178945/94‑1 (MQ=60)

                                                                               GTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTCGGCGAGCGAATCGGTATTAACC                >  SRR4302540.7912618/1‑94 (MQ=60)

                                                                               GTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTCGGCGAGCGAATCGGTATTAACA                >  SRR4302540.7912619/1‑94 (MQ=60)

                                                                               GTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGGACTTTCGGCGAGCGAACCGGTATTAACC                >  SRR4302540.6500194/1‑94 (MQ=60)

                                                                                TCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTCGGCGAGCGAACCGGTATTAACCA               <  SRR4302540.306365/94‑1 (MQ=60)

                                                                                TCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTCGGCGAGCGAACCGGTATTAACCA               >  SRR4302540.8502543/1‑94 (MQ=60)

                                                                                TCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTCGGCGAGCGAACCGGTATTAACCA               <  SRR4302540.3217031/94‑1 (MQ=60)

                                                                                TCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTCGGCGAGCGAACCGGTATTAACCA               <  SRR4302540.6382031/94‑1 (MQ=60)

                                                                                TCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTCGGCGAGCGAACCGGTATTAACCA               <  SRR4302540.3806034/94‑1 (MQ=60)

                                                                                 CAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTCGGCGAGCGAACCGGTATTAACCAG              <  SRR4302540.2496491/94‑1 (MQ=60)

                                                                                 CAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTCGGCGAGCGAACCGGTATTAACCAG              >  SRR4302540.4327599/1‑94 (MQ=60)

                                                                                  AAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTCGGCGAGCGAACCGGTATTAACCAGC             >  SRR4302540.8746746/1‑94 (MQ=60)

                                                                                  AAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTCGGCGAGCGAACCGGTATTAACCAGC             >  SRR4302540.643847/1‑94 (MQ=60)

                                                                                   AGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTCGGCGAGCGAACCGGTATTAACCAGCA            >  SRR4302540.1027504/1‑94 (MQ=60)

                                                                                    GGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTCGGCGAGCGAACCGGTATTAACCAGCAG           <  SRR4302540.8693203/94‑1 (MQ=60)

                                                                                    GGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTCGGCGAGCGAACCGGTATTAACCAGCAG           <  SRR4302540.7340944/94‑1 (MQ=60)

                                                                                     GCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCTTGACTGTAACCGCTCTGTTGTGTACTTTCGGCGAGCGAACCGGTATTAACCAGCAGG          <  SRR4302540.7035121/94‑1 (MQ=60)

                                                                                     GCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTCGGCGAGCGAACCGGTATTAACCAGCAGG          <  SRR4302540.5459469/94‑1 (MQ=60)

                                                                                      CCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTCGGCGAGCGAACCGGTATTAACCAGCAGGC         <  SRR4302540.2947719/94‑1 (MQ=60)

                                                                                       CACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTCGGCGAGCGAACCGGTATTAACCAGCAGGCG        >  SRR4302540.9278189/1‑94 (MQ=60)

                                                                                       CACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTCGGCGAGCGAACCGGTATTAACCAGCAGGCG        >  SRR4302540.131668/1‑94 (MQ=60)

                                                                                        CCCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTCGGCGAGCGAACCGGTATTAACCAGCAGGCGA       <  SRR4302540.5453541/94‑1 (MQ=60)

                                                                                        ACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTCGGCGAGCGAACCGGTATTAACCAGCAGGCGA       >  SRR4302540.3178230/1‑94 (MQ=60)

                                                                                          CGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTCGGCGAGCGAACCGGTATTAACCAGCAGGGGAAT     >  SRR4302540.342812/1‑94 (MQ=60)

                                                                                          CGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTCGGCGAGCGAACCGGTATTAACCAGCAGGCGAAT     >  SRR4302540.8402385/1‑94 (MQ=60)

                                                                                          CGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTCGGCGAGCGAACCGGTATTAACCAGCAGGCGAAT     >  SRR4302540.7992007/1‑94 (MQ=60)

                                                                                          CGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTCGGCGAGCGAACCGGTATTAACCAGCAGGCGAAT     <  SRR4302540.5804415/94‑1 (MQ=60)

                                                                                          CGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTCGGCGAGCGAACCGGTATTAACCAGCAGGCGAAT     >  SRR4302540.7638324/1‑94 (MQ=60)

                                                                                          CGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTCGGCGAGCGAACCGGAATTAACCAGCAGGCGAAT     >  SRR4302540.3574777/1‑94 (MQ=60)

                                                                                          CGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGCTGTGTACTTTCGGCGAGCGAACCGGTATTAACCAGCAGGCGAAT     >  SRR4302540.4209984/1‑94 (MQ=60)

                                                                                            CCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTCGGCGAGCGAACCGGTATTAACCAGCAGGCGAATTT   <  SRR4302540.10154048/94‑1 (MQ=60)

                                                                                             CTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTCGGCGAGCGAACCGGTATTAACCAGCAGGCGAATTTC  <  SRR4302540.8808280/94‑1 (MQ=60)

TGTCATAAGAGACAATTACCGGCGGCATCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCTTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTCGGCGAGCGAACCGGTATTAACCAGCAGGCGAATTTC  >  NC_000913/3679213‑3679399

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`