Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1624	250.6	12620048	98.0%	12367647	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,679,306	T→C	S89G (AGC→GGC)	yhjJ ←	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,679,306	0	T	C	100.0%	740.9 / NA	231	S89G (AGC→GGC)	yhjJ	hypothetical protein
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (113/118); total (113/118)

Only 100 of 236 total aligned reads displayed.

CATAAGAGACAATTACCGGCGGCATCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCTTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTCGGCGAGCGAACCGGTATTAACCAGCAGGCGAA  >  NC_000913/3679216‑3679395

cATAAGAGACAATTACCGGCGGCATCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCctt                                                                                         <  1:3073734/93‑1 (MQ=255)

 aTAAGAGACAATTACCGGCGGCATCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTg                                                                                        >  2:4086380/1‑93 (MQ=255)

 aTAAGAGACAATTACCGGCGGCATCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGACACCGCCTTg                                                                                        >  1:426076/1‑93 (MQ=255)

 aTAAGAGAAAATTACCGGCGGCATCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTg                                                                                        >  2:6132558/1‑93 (MQ=255)

  tAAGAGACAATTACCGGCGGCATCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTgg                                                                                       >  2:1205773/1‑92 (MQ=255)

  tAAGAGACAATTACCGGCGGCATCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGc                                                                                       >  2:2777512/1‑93 (MQ=255)

  tAAGAGACAATTACCGGCGGCATCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGc                                                                                       >  1:1773776/1‑93 (MQ=255)

   aaGAGACAATTACCGGCGGCATCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCg                                                                                      >  1:2722188/1‑93 (MQ=255)

    agagACAATTGCCGGCGGTATCGGGCGTTTAGGGTCGATCCCCAGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGt                                                                                     <  1:6246222/93‑1 (MQ=255)

    agagACAATTACCGGCGGCATCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGt                                                                                     >  1:789906/1‑93 (MQ=255)

      agaCAATTACCGGCGGCATCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTa                                                                                   <  1:5246871/93‑1 (MQ=255)

          aaTTACCGGCGGCATCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGACACCGCCTTGCGTTAgcgc                                                                               >  1:3999487/1‑93 (MQ=255)

           aTTACCGGCGGCATCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCa                                                                              >  1:4381371/1‑93 (MQ=255)

            ttACCGGCGGCATCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCaa                                                                             <  2:3502443/93‑1 (MQ=255)

            ttACCGGCGGCATCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCaa                                                                             >  1:981538/1‑93 (MQ=255)

            ttACCGGCGGCATCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCaa                                                                             >  2:4528115/1‑93 (MQ=255)

            ttACCGGCGGCATCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCaa                                                                             >  1:3394134/1‑93 (MQ=255)

            ttACCGGCGGCAGCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCaa                                                                             <  1:1232090/93‑1 (MQ=255)

              tccGGCGGCATCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATa                                                                           <  1:5649863/92‑1 (MQ=255)

               ccGGCGGCATCGGGCGTTTAGGGTTGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATAc                                                                          >  2:5887210/1‑93 (MQ=255)

               ccGGCGGCATCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATAc                                                                          >  1:7776/1‑93 (MQ=255)

                 ggcggcATCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGa                                                                        >  2:643908/1‑93 (MQ=255)

                  gcggcATCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAg                                                                       <  1:5047411/93‑1 (MQ=255)

                  gcggcATCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAg                                                                       >  1:2512085/1‑93 (MQ=255)

                  gcggcATCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAg                                                                       >  1:4194540/1‑93 (MQ=255)

                    ggcATCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAggg                                                                     <  2:5684179/93‑1 (MQ=255)

                     gcATCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGa                                                                    <  2:3400556/93‑1 (MQ=255)

                     gcATCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGa                                                                    <  1:2873924/93‑1 (MQ=255)

                       aTCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATg                                                                  >  2:1331784/1‑93 (MQ=255)

                        tCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATgg                                                                 <  2:5617656/93‑1 (MQ=255)

                        tCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATgg                                                                 >  1:5378113/1‑93 (MQ=255)

                        tCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATgg                                                                 <  2:2500041/93‑1 (MQ=255)

                         cGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCTACCGCCTTGCGTTAGCGCAATACGAGGGATGGc                                                                <  1:3772521/93‑1 (MQ=255)

                         cGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGc                                                                <  2:5307965/93‑1 (MQ=255)

                          gggCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCg                                                               <  1:2800372/93‑1 (MQ=255)

                           ggCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGt                                                              >  1:2768266/1‑93 (MQ=255)

                              gTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGAc                                                           <  2:5766043/93‑1 (MQ=255)

                               tttAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACt                                                          >  2:3075767/1‑93 (MQ=255)

                                ttAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTg                                                         <  1:5195951/93‑1 (MQ=255)

                                 tAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGt                                                        <  1:1982565/93‑1 (MQ=255)

                                 tAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGt                                                        <  1:1557750/93‑1 (MQ=255)

                                     gTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAAcc                                                    >  1:1712950/1‑93 (MQ=255)

                                     gTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAAcc                                                    >  1:289996/1‑93 (MQ=255)

                                     gTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAAcc                                                    <  1:2653506/93‑1 (MQ=255)

                                      tCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGAGACTGTAACCg                                                   >  2:4274222/1‑93 (MQ=255)

                                        gATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGct                                                 >  1:3258270/1‑93 (MQ=255)

                                        gATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGct                                                 >  2:204611/1‑93 (MQ=255)

                                         aTCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGctc                                                <  1:5812334/93‑1 (MQ=255)

                                         aTCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGctc                                                <  2:6256689/93‑1 (MQ=255)

                                          tCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGTGTGACTGTAACCGctct                                               <  2:1064102/93‑1 (MQ=255)

                                          tCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGctct                                               >  1:4709679/1‑93 (MQ=255)

                                          tCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGctct                                               >  2:1798404/1‑93 (MQ=255)

                                          tCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGctct                                               >  1:3665564/1‑93 (MQ=255)

                                            cccTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCtgt                                             >  1:1969398/1‑93 (MQ=255)

                                              ctgctgCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCtgttg                                           <  2:1902507/93‑1 (MQ=255)

                                              ctgctgCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCtgttg                                           <  2:511669/93‑1 (MQ=255)

                                              ctgctgCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCtgttg                                           >  1:4600890/1‑93 (MQ=255)

                                                gctgcCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTtgtg                                         <  1:3546820/93‑1 (MQ=255)

                                                 ctgcCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTgtgt                                        >  1:3728819/1‑93 (MQ=255)

                                                  tgcCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTa                                       >  1:1799114/1‑93 (MQ=255)

                                                   gcCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTAc                                      <  1:4797504/93‑1 (MQ=255)

                                                    ccACGATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACt                                     <  2:574232/93‑1 (MQ=255)

                                                    ccACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACt                                     <  2:5056964/93‑1 (MQ=255)

                                                      acaATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACttt                                   <  2:439487/93‑1 (MQ=255)

                                                      acaATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACttt                                   >  2:4635614/1‑93 (MQ=255)

                                                      acaATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACttt                                   <  2:2905103/93‑1 (MQ=255)

                                                       caATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTc                                  <  2:3927489/93‑1 (MQ=255)

                                                       caATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTc                                  <  1:4505551/93‑1 (MQ=255)

                                                        aaTGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTCg                                 >  1:1136284/1‑93 (MQ=255)

                                                        aaTGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTCg                                 >  2:2346166/1‑93 (MQ=255)

                                                         aTGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTCgg                                <  1:389747/93‑1 (MQ=255)

                                                          tGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTCGgc                               >  2:1469284/1‑93 (MQ=255)

                                                            aaCGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTCGgcga                             <  2:5235871/93‑1 (MQ=255)

                                                             aCGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTCGgcgag                            >  1:6048422/1‑93 (MQ=255)

                                                              cgcgCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTCGgcgagc                           >  2:1308812/1‑93 (MQ=255)

                                                               gcgcCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTCGgcgagcg                          >  2:1629894/1‑93 (MQ=255)

                                                                 gcCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTCGGCGAGCGaa                        >  2:940943/1‑93 (MQ=255)

                                                                 gcCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTCGGCGAGCGaa                        >  1:5752882/1‑93 (MQ=255)

                                                                 gcCTGTGCTGCGTCAAGGCCACCGCCTTGAGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTCGGCGAGCGaa                        >  2:4588878/1‑93 (MQ=255)

                                                                  ccTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTCGGCGAGCGAAc                       <  2:2005805/93‑1 (MQ=255)

                                                                  ccTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTCGGCGAGCGAAc                       <  1:4224146/93‑1 (MQ=255)

                                                                     gtgCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTCGGCGAGCGAACCgg                    <  1:2606098/93‑1 (MQ=255)

                                                                       gctgcGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTCGGCGAGCGAACCGGTa                  >  2:3657040/1‑93 (MQ=255)

                                                                           cGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTCGGCGAGCGAACCGGTATTaa              <  2:435201/93‑1 (MQ=255)

                                                                             tCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTTTACTTTCGGCGAGCGAACCGGTATTAAcc            <  2:630385/93‑1 (MQ=255)

                                                                             tCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTCGGCGAGCGAACCGGTATTAAcc            <  1:825814/93‑1 (MQ=255)

                                                                             tCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTCGGCGAGCGAACCGGTATTAAcc            <  1:1409540/93‑1 (MQ=255)

                                                                              cAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTCGGCGAGCGAACCGGTATTAACca           <  2:4192611/93‑1 (MQ=255)

                                                                              cAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTCGGCGAGCGAACCGGTATTAACca           <  1:4418754/93‑1 (MQ=255)

                                                                              cAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGCGTACTTTCGGCGAGCGAACCGGTATTAACca           <  2:5042261/93‑1 (MQ=255)

                                                                               aaGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTCGGCGAGCGAACCGGTATTAACcag          <  1:3647042/93‑1 (MQ=255)

                                                                                aGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTCGGCGAGCGAACCGGTATTAACcagc         >  1:1046832/1‑93 (MQ=255)

                                                                                aGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTCGGCGAGCGAACCGGTATTAACcagc         <  2:3343043/93‑1 (MQ=255)

                                                                                 ggCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTCGGCGAGCGAACCGGTATTAACcagca        <  1:246310/93‑1 (MQ=255)

                                                                                   ccACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTCACCGCTCTGTTGTGTACTTTCGGCGCGCGCACCGCTATTAACccgcagc      >  2:3887501/1‑92 (MQ=255)

                                                                                   ccACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTCGGCGAGCGAACCGGTATTAACCAGCAgg      >  1:481519/1‑93 (MQ=255)

                                                                                   ccACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTCGGCGAGCGAACCGGTATTAACCAGCAgg      >  1:1855188/1‑93 (MQ=255)

                                                                                   ccACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTCGGCGAGCGAACCGGTATTAACCAGCAgg      <  1:1639921/93‑1 (MQ=255)

                                                                                     aCCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTCGGCGAGCGAACCGGTATTAACCAGCAGGCg    >  2:726151/1‑93 (MQ=255)

                                                                                       cGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTCGGCGAGCGAACCGGTATTAACCAGCAGGCGaa  <  2:2384678/93‑1 (MQ=255)

CATAAGAGACAATTACCGGCGGCATCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCTTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTCGGCGAGCGAACCGGTATTAACCAGCAGGCGAA  >  NC_000913/3679216‑3679395

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

TGTCATAAGAGACAATTACCGGCGGCATCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCTTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTCGGCGAGCGAACCGGTATTAACCAGCAGGCGAATTTC  >  NC_000913/3679213‑3679399

ggaCATAAGAGACAATTGCCGGCGGCATGGGGCGTTTAGGGCCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCC                                                                                               <  SRR4302533.1162228/91‑1 (MQ=60)

TGTCATAAGAGACAATTACCGGCGGCATCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCC                                                                                               >  SRR4302533.5426695/1‑94 (MQ=60)

TGTCATAAGAGACAATTACCGGCGGCATCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCC                                                                                               >  SRR4302533.1488993/1‑94 (MQ=60)

TGTCATAAGAGACAATTACCGGCGGCATCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCC                                                                                               >  SRR4302533.5092891/1‑94 (MQ=60)

  TCATAAGAGACAATTACCGGCGGCATCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTT                                                                                             <  SRR4302533.446266/94‑1 (MQ=60)

  TCATAAGAGACAATTACCGGCGGCATCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTT                                                                                             <  SRR4302533.1731116/94‑1 (MQ=60)

  TCATAAGAGACAATTACCGGCGGCATCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTT                                                                                             <  SRR4302533.2905096/94‑1 (MQ=60)

   CATAAGAGACAATTACCGGCGGCATCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTG                                                                                            <  SRR4302533.3092602/94‑1 (MQ=60)

   CATAAGAGACAATTACCGGCGGCATCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGACACCGCCTTG                                                                                            >  SRR4302533.428618/1‑94 (MQ=60)

    ATAAGAGACAATTACCGGCGGCATCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGC                                                                                           >  SRR4302533.1784579/1‑94 (MQ=60)

    ATAAGAGACAATTACCGGCGGCATCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGC                                                                                           >  SRR4302533.1430033/1‑94 (MQ=60)

    ATAAGAGACAATTACCGGCGGCATCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGC                                                                                           >  SRR4302533.6290452/1‑94 (MQ=60)

     TAAGAGACAATTACCGGCGGCATCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCG                                                                                          >  SRR4302533.2738894/1‑94 (MQ=60)

      AAGAGACAATTACCGGCGGCATCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGT                                                                                         >  SRR4302533.794556/1‑94 (MQ=60)

       AGAGACAATTGCCGGCGGTATCGGGCGTTTAGGGTCGATCCCCAGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTT                                                                                        <  SRR4302533.6283606/94‑1 (MQ=60)

       AGAGACAATTACCGGCGGCATCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTT                                                                                        <  SRR4302533.1676515/94‑1 (MQ=60)

         AGACAATTACCGGCGGCATCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAG                                                                                      <  SRR4302533.5278418/94‑1 (MQ=60)

         AGACAATTACCGGCGGCATCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAG                                                                                      <  SRR4302533.4425575/94‑1 (MQ=60)

          GACAATTACCGGCGGCATCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGC                                                                                     <  SRR4302533.1158539/94‑1 (MQ=60)

          GACAATTACCGGCGGCATCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGC                                                                                     >  SRR4302533.1990019/1‑94 (MQ=60)

            CAATTACCGGCGGCATCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGACACCGCCTTGCGTTAGCGC                                                                                   >  SRR4302533.4023839/1‑94 (MQ=60)

            AAATTACCGGCGGCATCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGC                                                                                   <  SRR4302533.1736431/94‑1 (MQ=60)

             AATTACCGGCGGCATCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCA                                                                                  >  SRR4302533.4407825/1‑94 (MQ=60)

             AATTACCGGCGGCATCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCA                                                                                  >  SRR4302533.1387963/1‑94 (MQ=60)

             AATTACCGGCGGCATCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCA                                                                                  >  SRR4302533.978379/1‑94 (MQ=60)

              ATTACCGGCGGCATCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAA                                                                                 >  SRR4302533.3415095/1‑94 (MQ=60)

              ATTACCGGCGGCATCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAA                                                                                 >  SRR4302533.987291/1‑94 (MQ=60)

               TTACCGGCGGCATCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAAT                                                                                >  SRR4302533.4778781/1‑94 (MQ=60)

               TTACCGGCGGCATCGGGCGTTTAGGCTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAAT                                                                                <  SRR4302533.6123825/94‑1 (MQ=60)

               TTACCGGCGGCAGCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAAT                                                                                <  SRR4302533.1239464/94‑1 (MQ=60)

                TACCGGCGGCATCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAACGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATA                                                                               >  SRR4302533.2963989/1‑94 (MQ=60)

                 TCCGGCGGCATCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATAC                                                                              <  SRR4302533.5684015/94‑1 (MQ=60)

                 ACCGGCGGCATCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATAC                                                                              >  SRR4302533.3380077/1‑94 (MQ=60)

                 ACCGGCGGCATCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATAC                                                                              >  SRR4302533.985556/1‑94 (MQ=60)

                 ACCGGCGGCATCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATAC                                                                              >  SRR4302533.7842/1‑94 (MQ=60)

                 ACCGGCGGCATCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATAC                                                                              <  SRR4302533.5133482/94‑1 (MQ=60)

                  CCGGCGGCATCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACG                                                                             <  SRR4302533.5250346/94‑1 (MQ=60)

                   CGGCGGCATCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGA                                                                            <  SRR4302533.2513333/94‑1 (MQ=60)

                   CGGCGGCATCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGA                                                                            <  SRR4302533.4598842/94‑1 (MQ=60)

                    GGCGGCATCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAG                                                                           >  SRR4302533.2527562/1‑94 (MQ=60)

                    GGCGGCATCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAG                                                                           >  SRR4302533.4219929/1‑94 (MQ=60)

                    GGCGCCATGGGGCGTTTGGGGTTGATCCCCGGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAG                                                                           <  SRR4302533.5334976/94‑1 (MQ=60)

                     GCGGCATCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGG                                                                          <  SRR4302533.5077942/94‑1 (MQ=60)

                      GGGCATCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGG                                                                         <  SRR4302533.2901008/94‑1 (MQ=60)

                       GGCATCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGA                                                                        >  SRR4302533.5648192/1‑94 (MQ=60)

                       GGCATCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGA                                                                        >  SRR4302533.1870205/1‑94 (MQ=60)

                       GGCATCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGA                                                                        <  SRR4302533.1719579/94‑1 (MQ=60)

                       GGCATCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGA                                                                        >  SRR4302533.4000241/1‑94 (MQ=60)

                        GCATCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGAT                                                                       <  SRR4302533.2891606/94‑1 (MQ=60)

                        GCATCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGAT                                                                       <  SRR4302533.2891607/94‑1 (MQ=60)

                         CATCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATG                                                                      <  SRR4302533.1073640/94‑1 (MQ=60)

                          ATCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGG                                                                     >  SRR4302533.5410429/1‑94 (MQ=60)

                            CGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCTACCGCCTTGCGTTAGCGCAATACGAGGGATGGCG                                                                   <  SRR4302533.3795645/94‑1 (MQ=60)

                             GGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGT                                                                  <  SRR4302533.2817595/94‑1 (MQ=60)

                             GGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGT                                                                  >  SRR4302533.2785247/1‑94 (MQ=60)

                                 GTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACT                                                              >  SRR4302533.2268461/1‑94 (MQ=60)

                                   TTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGT                                                            <  SRR4302533.5227286/94‑1 (MQ=60)

                                    TAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTA                                                           <  SRR4302533.1994701/94‑1 (MQ=60)

                                    TAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTA                                                           <  SRR4302533.1567130/94‑1 (MQ=60)

                                      GGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAAC                                                         >  SRR4302533.3750675/1‑94 (MQ=60)

                                      GGGTCGATCCCCTACTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAAC                                                         <  SRR4302533.3626226/94‑1 (MQ=60)

                                       GGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACC                                                        >  SRR4302533.1723329/1‑94 (MQ=60)

                                       GGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACC                                                        <  SRR4302533.257116/94‑1 (MQ=60)

                                       GGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACC                                                        >  SRR4302533.291762/1‑94 (MQ=60)

                                       GGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACC                                                        <  SRR4302533.3776714/94‑1 (MQ=60)

                                        GTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCG                                                       <  SRR4302533.2669806/94‑1 (MQ=60)

                                        GTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCG                                                       <  SRR4302533.5176559/94‑1 (MQ=60)

                                          CGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCT                                                     >  SRR4302533.3278366/1‑94 (MQ=60)

                                           GATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTC                                                    >  SRR4302533.4616341/1‑94 (MQ=60)

                                            ATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCT                                                   <  SRR4302533.2814049/94‑1 (MQ=60)

                                            ATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCT                                                   <  SRR4302533.5847439/94‑1 (MQ=60)

                                            ATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCT                                                   >  SRR4302533.3688097/1‑94 (MQ=60)

                                            ATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCT                                                   >  SRR4302533.4738223/1‑94 (MQ=60)

                                              CCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGT                                                 >  SRR4302533.1981442/1‑94 (MQ=60)

                                               CCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTT                                                >  SRR4302533.3456377/1‑94 (MQ=60)

                                                CCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTG                                               >  SRR4302533.698365/1‑94 (MQ=60)

                                                CCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTG                                               >  SRR4302533.4628764/1‑94 (MQ=60)

                                                  TGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTG                                             <  SRR4302533.2641717/94‑1 (MQ=60)

                                                  TGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTG                                             <  SRR4302533.5813019/94‑1 (MQ=60)

                                                   GCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGT                                            >  SRR4302533.3751693/1‑94 (MQ=60)

                                                   GCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGT                                            <  SRR4302533.3568680/94‑1 (MQ=60)

                                                   GCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGT                                            >  SRR4302533.1816133/1‑94 (MQ=60)

                                                    CTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTA                                           >  SRR4302533.1810061/1‑94 (MQ=60)

                                                    CTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTA                                           <  SRR4302533.262039/94‑1 (MQ=60)

                                                     TGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTAC                                          >  SRR4302533.1784941/1‑94 (MQ=60)

                                                      GCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACT                                         <  SRR4302533.4826565/94‑1 (MQ=60)

                                                        CACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCCATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTT                                       <  SRR4302533.3400918/94‑1 (MQ=60)

                                                        CACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTT                                       <  SRR4302533.2827008/94‑1 (MQ=60)

                                                         ACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTC                                      >  SRR4302533.4918133/1‑94 (MQ=60)

                                                          CAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTCG                                     >  SRR4302533.1143038/1‑94 (MQ=60)

                                                          CAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTCG                                     <  SRR4302533.2698490/94‑1 (MQ=60)

                                                          CAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTCG                                     <  SRR4302533.4532843/94‑1 (MQ=60)

                                                           AATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTCGG                                    <  SRR4302533.811798/94‑1 (MQ=60)

                                                           AATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTCGG                                    <  SRR4302533.1612228/94‑1 (MQ=60)

                                                            ATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTCGGC                                   <  SRR4302533.392102/94‑1 (MQ=60)

                                                              GAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTCGGCGA                                 <  SRR4302533.1861196/94‑1 (MQ=60)

                                                              GAACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTCGGCGA                                 <  SRR4302533.1277491/94‑1 (MQ=60)

                                                               AACGCGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTCGGCGAG                                >  SRR4302533.6085068/1‑94 (MQ=60)

                                                                   CGCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTCGGCGAGCGAA                            >  SRR4302533.5787591/1‑94 (MQ=60)

                                                                    GCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTCGGCGAGCGAAC                           >  SRR4302533.4063524/1‑94 (MQ=60)

                                                                    GCCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTCGGCGAGCGAAC                           >  SRR4302533.56989/1‑94 (MQ=60)

                                                                     CCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTCGGCGAGCGAACC                          <  SRR4302533.4249683/94‑1 (MQ=60)

                                                                     CCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTCGGCGAGCGAACC                          <  SRR4302533.5440616/94‑1 (MQ=60)

                                                                     CCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTCGGCGAGCGAACC                          <  SRR4302533.3242618/94‑1 (MQ=60)

                                                                     CCTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTCGGCGAGCGAACC                          <  SRR4302533.4832860/94‑1 (MQ=60)

                                                                      CTGTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTCGGCGAGCGAACCG                         >  SRR4302533.4475151/1‑94 (MQ=60)

                                                                        GTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTCGGCGAGCGAACCGGT                       >  SRR4302533.4730166/1‑94 (MQ=60)

                                                                        GTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTCGGCGAGCGAACCGGT                       <  SRR4302533.3604568/94‑1 (MQ=60)

                                                                        GTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTCGGCGAGCGAACCGGT                       <  SRR4302533.2622104/94‑1 (MQ=60)

                                                                        GTGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTCGGCGAGCGAACCGGT                       <  SRR4302533.4316498/94‑1 (MQ=60)

                                                                         TGCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTCGGCGAGCGAACCGGTA                      >  SRR4302533.790394/1‑94 (MQ=60)

                                                                          GCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTCGGCGAGCGAACCGGTAT                     <  SRR4302533.5874822/94‑1 (MQ=60)

                                                                          GCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTCGGCGAGCGAACCGGTAT                     <  SRR4302533.423726/94‑1 (MQ=60)

                                                                          GCTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTCGGCGAGCGAACCGGTAT                     <  SRR4302533.4323751/94‑1 (MQ=60)

                                                                           CTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTCGGCGAGCGAACCGGTATT                    >  SRR4302533.276182/1‑94 (MQ=60)

                                                                           CTGCGTCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTCGGCGAGCGAACCGGTATT                    >  SRR4302533.4200568/1‑94 (MQ=60)

                                                                                TCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTCGGCGAGCGAACCGGTATTAACCA               <  SRR4302533.1418062/94‑1 (MQ=60)

                                                                                TCAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTCGGCGAGCGAACCGGTATTAACCA               <  SRR4302533.830658/94‑1 (MQ=60)

                                                                                 CAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTCGGCGAGCGAACCGGTATTAACCAG              <  SRR4302533.4445469/94‑1 (MQ=60)

                                                                                 CAAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTCGGCGAGCGAACCGGTATTAACCAG              <  SRR4302533.3762398/94‑1 (MQ=60)

                                                                                  AAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTCGGCGAGCGAACCGGTATTAACCAGC             <  SRR4302533.3669467/94‑1 (MQ=60)

                                                                                  AAGGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTCGGCGAGCGAACCGGTATTAACCAGC             >  SRR4302533.1052985/1‑94 (MQ=60)

                                                                                    GGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTCGGCGAGCGAACCGGTATTAACCAGCAG           <  SRR4302533.6036229/94‑1 (MQ=60)

                                                                                    GGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTCGGCGAGCGAACCGGTATTAACCAGCAG           <  SRR4302533.4790039/94‑1 (MQ=60)

                                                                                    GGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTCGGCGAGCGAACCGGTATTAACCAGCAG           <  SRR4302533.4256728/94‑1 (MQ=60)

                                                                                    GGCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTCGGCGAGCGAACCGGTATTAACCAGCAG           <  SRR4302533.247834/94‑1 (MQ=60)

                                                                                     GCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTCGGCGAGCGAACCGGTATTAACCAGCAGG          >  SRR4302533.484395/1‑94 (MQ=60)

                                                                                     GCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTCGGCGAGCGAACCGGTATTAACCAGCAGG          >  SRR4302533.1866501/1‑94 (MQ=60)

                                                                                     GCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTCGGCGAGCGAACCGGTATTAACCAGCAGG          >  SRR4302533.3684683/1‑94 (MQ=60)

                                                                                     GCCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTCGGCGAGCGAACCGGTATTAACCAGCAGG          >  SRR4302533.2097289/1‑94 (MQ=60)

                                                                                      CCACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTCGGCGAGCGAACCGGTATTAACCAGCAGGC         <  SRR4302533.1649853/94‑1 (MQ=60)

                                                                                       CACCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTCGGCGAGCGAACCGGTATTAACCAGCAGGCG        <  SRR4302533.2769605/94‑1 (MQ=60)

                                                                                         CCGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTCGGCGAGCGAACCGGTATTAACCAGCAGGCGAA      >  SRR4302533.3878847/1‑94 (MQ=60)

                                                                                          CGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTTGGTCTTTTCGCCAAGCGAACCGGTATTAACAAGCAGGCGATT     >  SRR4302533.4174867/1‑94 (MQ=60)

                                                                                          CGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTCGGCGAGCGAACCGGTATTAACCAGCAGGCGAAT     >  SRR4302533.1651109/1‑94 (MQ=60)

                                                                                          CGCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTCGGCGAGCGAACCGGTATTAACCAGCAGGCGAAT     >  SRR4302533.2699121/1‑94 (MQ=60)

                                                                                           GCCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTCGGCGAGCGAACCGGTATTAACCAGCAGGCGAATT    <  SRR4302533.3880699/94‑1 (MQ=60)

                                                                                            CCTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTCGGCGAGCGAACCGGTATTAACCAGCAGGCGAATTT   <  SRR4302533.4086125/94‑1 (MQ=60)

                                                                                             CTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAGCCGCTCTGTTGTGTACTTTCGGCGAGCGAACCGGTATTAACCAGCAGGCGAATTTC  >  SRR4302533.1209317/1‑94 (MQ=60)

                                                                                             CTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTCGGCGAGCGAACCGGTATTAACCAGCAGGCGAATTTC  >  SRR4302533.1054155/1‑94 (MQ=60)

TGTCATAAGAGACAATTACCGGCGGCATCGGGCGTTTAGGGTCGATCCCCTGCTGCCACAATGAACGCGCCTGTGCTGCGTCAAGGCCACCGCTTTGCGTTAGCGCAATACGAGGGATGGCGTGACTGTAACCGCTCTGTTGTGTACTTTCGGCGAGCGAACCGGTATTAACCAGCAGGCGAATTTC  >  NC_000913/3679213‑3679399

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 9 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`