Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	1548	369.5	20095359	96.9%	19472402	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,902,722	G→A	G168G (GGC→GGT)	bglF ←	PTS system beta‑glucosides‑specific enzyme IIABC component

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,902,722	0	G	A	99.8%	1985.1 / ‑5.8	557	G168G (GGC→GGT)	bglF	PTS system beta‑glucosides‑specific enzyme IIABC component
Reads supporting (aligned to +/- strand): ref base G (0/1); new base A (279/276); total (279/278)
Fisher's exact test for biased strand distribution p-value = 4.98e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.58e-01

Only 100 of 579 total aligned reads displayed.

CGCATCCGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCGCCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATAAGTACCACT  >  NC_000913/3902632‑3902814

  cATCCGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGa                                                                                          <  2:5442773/93‑1 (MQ=255)

   aTCCGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGaa                                                                                         <  2:9610588/93‑1 (MQ=255)

    tCCGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAg                                                                                        >  2:4798293/1‑93 (MQ=255)

      cGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCg                                                                                      >  1:5690068/1‑93 (MQ=255)

      cGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCg                                                                                      <  1:4475477/93‑1 (MQ=255)

       gCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGt                                                                                     >  1:8071607/1‑93 (MQ=255)

        cTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTTATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGtt                                                                                    >  2:1806087/1‑93 (MQ=255)

        cTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACTAATCACCATGGCAGTAAATGGATTACCACCGAAGCGtt                                                                                    >  2:8798472/1‑93 (MQ=255)

        cTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGtt                                                                                    <  2:8445922/93‑1 (MQ=255)

          ttttGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTc                                                                                  <  1:8535117/93‑1 (MQ=255)

           tttGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTcc                                                                                 >  1:7405345/1‑93 (MQ=255)

           tctGCCCGTGCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTcc                                                                                 <  1:6005454/91‑1 (MQ=255)

            ttGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTccc                                                                                <  2:4526596/93‑1 (MQ=255)

             tGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTcccc                                                                               >  2:204054/1‑93 (MQ=255)

              gCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCcg                                                                              <  1:9461042/93‑1 (MQ=255)

              gCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCcg                                                                              <  1:5036045/93‑1 (MQ=255)

               cccGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCcgc                                                                             >  2:765735/1‑93 (MQ=255)

                 cGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCgg                                                                           <  2:4340051/93‑1 (MQ=255)

                   ttCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGgtg                                                                         >  1:4768637/1‑93 (MQ=255)

                    tctcGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGgtgt                                                                        >  2:9115239/1‑93 (MQ=255)

                     ctcGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTa                                                                       <  2:188239/93‑1 (MQ=255)

                     ctcGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTa                                                                       >  1:5834702/1‑93 (MQ=255)

                     ctcGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTa                                                                       >  2:1494730/1‑93 (MQ=255)

                        gAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATcc                                                                    >  2:5929904/1‑93 (MQ=255)

                           aGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAg                                                                 <  2:6818449/93‑1 (MQ=255)

                             cAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATCACCACCGAAGCGTCTCCCCGCGGTGTATCCCAGGa                                                               <  1:1822866/93‑1 (MQ=255)

                              aGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGAt                                                              <  2:7464674/93‑1 (MQ=255)

                                tCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTa                                                            >  2:3439571/1‑93 (MQ=255)

                                tCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTa                                                            >  1:975484/1‑93 (MQ=255)

                                tCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTa                                                            >  2:6324583/1‑93 (MQ=255)

                                tCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGCAAATGGATTACCACAGAAGCGGTTCCCCGACGTGCATCCCAGGAtca                                                            >  2:5290027/1‑91 (MQ=255)

                                 cAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTAt                                                           <  2:8908143/93‑1 (MQ=255)

                                 cAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTAt                                                           <  1:1921656/93‑1 (MQ=255)

                                   gAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCg                                                         >  1:2662997/1‑93 (MQ=255)

                                   gAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCg                                                         <  1:4274096/93‑1 (MQ=255)

                                    aaTTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCgg                                                        >  2:8689879/1‑93 (MQ=255)

                                    aaTTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCgg                                                        >  1:9229658/1‑93 (MQ=255)

                                     aTTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCggg                                                       <  1:8685836/93‑1 (MQ=255)

                                      ttAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGga                                                      >  1:1612780/1‑93 (MQ=255)

                                      ttAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGga                                                      <  1:8495177/93‑1 (MQ=255)

                                       tcaTGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGgaa                                                     <  1:2996357/91‑1 (MQ=255)

                                       tAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGgaa                                                     <  2:6734206/93‑1 (MQ=255)

                                       tAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGgaa                                                     <  1:361640/93‑1 (MQ=255)

                                       tAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGgaa                                                     >  1:2061935/1‑93 (MQ=255)

                                       tAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCAAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGgaa                                                     >  1:2854782/1‑93 (MQ=255)

                                       tAATGGATACACTAACGCTCAACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGgaa                                                     >  1:7620274/1‑93 (MQ=255)

                                        aaTGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGgaag                                                    <  1:7010733/93‑1 (MQ=255)

                                         aTGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGgaaga                                                   >  1:140187/1‑93 (MQ=255)

                                         aTGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGgaaga                                                   <  2:4772009/93‑1 (MQ=255)

                                          tGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGgaagaa                                                  >  1:3381086/1‑93 (MQ=255)

                                                cACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCaaaa                                            <  1:5210551/93‑1 (MQ=255)

                                                  cTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACa                                          <  2:4125804/93‑1 (MQ=255)

                                                   tAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACaa                                         >  1:692801/1‑93 (MQ=255)

                                                    aaCGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAg                                        >  1:1071359/1‑93 (MQ=255)

                                                     aCGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAgg                                       <  2:7023995/93‑1 (MQ=255)

                                                      cGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGc                                      <  1:2252450/93‑1 (MQ=255)

                                                      cGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGc                                      >  1:2473320/1‑93 (MQ=255)

                                                       gCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGCAGAACCAAAACAAGGCa                                     >  1:9924588/1‑93 (MQ=255)

                                                        cTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCAt                                    <  2:825411/93‑1 (MQ=255)

                                                        cTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCAt                                    >  1:9044450/1‑93 (MQ=255)

                                                          ccaccaATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCa                                  <  2:1317587/93‑1 (MQ=255)

                                                           caccaATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCAc                                 <  2:246567/93‑1 (MQ=255)

                                                           caccaATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCAc                                 <  2:3518355/93‑1 (MQ=255)

                                                            accaATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACt                                <  1:4148798/93‑1 (MQ=255)

                                                             ccaATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTg                               >  1:3850414/1‑93 (MQ=255)

                                                               aaTCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGgc                             <  2:3930439/93‑1 (MQ=255)

                                                               aaTCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGgc                             >  1:8245614/1‑93 (MQ=255)

                                                               aaTCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGgc                             <  1:5393054/93‑1 (MQ=255)

                                                               aaTCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGgc                             <  1:6625055/93‑1 (MQ=255)

                                                               aaTCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGgc                             <  1:632328/93‑1 (MQ=255)

                                                                aTCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGgcg                            >  2:2749674/1‑93 (MQ=255)

                                                                 tCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGgcgc                           >  2:8051837/1‑93 (MQ=255)

                                                                 tCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGgcgc                           <  1:4592982/93‑1 (MQ=255)

                                                                    ccATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGa                        <  1:5594625/93‑1 (MQ=255)

                                                                    ccATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGa                        >  1:10012069/1‑93 (MQ=255)

                                                                     cATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGaa                       >  2:5633669/1‑93 (MQ=255)

                                                                      aTGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATCATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAAt                      <  2:1248720/93‑1 (MQ=255)

                                                                       tGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATa                     >  2:7913308/1‑93 (MQ=255)

                                                                       tGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATa                     >  2:10040144/1‑93 (MQ=255)

                                                                       tGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATa                     <  2:2185485/93‑1 (MQ=255)

                                                                        ggCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATaa                    >  1:377607/1‑93 (MQ=255)

                                                                        ggCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATaa                    <  1:8864708/93‑1 (MQ=255)

                                                                         gCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATaaa                   <  2:4962744/93‑1 (MQ=255)

                                                                          cAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATacaa                  >  2:664491/1‑93 (MQ=255)

                                                                           aGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAAt                 <  1:797115/93‑1 (MQ=255)

                                                                           aGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAAt                 >  1:6447023/1‑93 (MQ=255)

                                                                           aGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAAt                 <  2:9434043/93‑1 (MQ=255)

                                                                            gTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAAtt                <  2:4078300/93‑1 (MQ=255)

                                                                            gTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAAtt                <  1:7279308/93‑1 (MQ=255)

                                                                             tAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTa               >  2:7136749/1‑93 (MQ=255)

                                                                             tAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTa               >  2:9733845/1‑93 (MQ=255)

                                                                                aTGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAAt            <  2:9274076/93‑1 (MQ=255)

                                                                                 tGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATa           <  2:3068059/93‑1 (MQ=255)

                                                                                 tGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATa           <  2:2857214/93‑1 (MQ=255)

                                                                                 tGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATa           <  1:3220989/93‑1 (MQ=255)

                                                                                   gATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATAAg         <  2:4626648/93‑1 (MQ=255)

                                                                                   gATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATAAg         <  1:3466771/93‑1 (MQ=255)

                                                                                    aTTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATAAga        >  2:7380193/1‑92 (MQ=255)

                                                                                     ttACCACCGAAGCGTTTCCCCGCGGTGTATACCAGGATTATCGGGACGAACCATAAAAAGGCATCACTGGCGCTGAAAAAAATTAACTCAGTa       >  2:6096583/1‑93 (MQ=255)

                                                                                     ttACCACCGAAGCGTTGCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATAAGTa       <  2:3682081/93‑1 (MQ=255)

CGCATCCGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCGCCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATAAGTACCACT  >  NC_000913/3902632‑3902814

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 21 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output Only 200 of 304 total aligned reads displayed.

CAGCGCATCCGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCGCCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATAAGTACCACT  >  NC_000913/3902629‑3902814

CAGCGCATCCGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCA                                                                                              >  SRR4302540.991275/1‑94 (MQ=60)

CAGCGCATCCGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCA                                                                                              >  SRR4302540.3667858/1‑94 (MQ=60)

CAGCGCATCCGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCA                                                                                              <  SRR4302540.4910461/94‑1 (MQ=60)

CAGCGCATCCGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCA                                                                                              >  SRR4302540.7286884/1‑94 (MQ=60)

CAGCGCATCCGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCA                                                                                              >  SRR4302540.7302313/1‑94 (MQ=60)

 AGCGCATCCGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCAC                                                                                             <  SRR4302540.9417963/94‑1 (MQ=60)

 AGCGCATCCGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCAC                                                                                             <  SRR4302540.6053528/94‑1 (MQ=60)

  GCGCATCCGCTTTTTGCCCGTTCTCGAAAGCCGTTAGAATTAATTGATGCACTAACGCTCCCCCAATCCCCATGGCAGTAAATGGATTACCACC                                                                                            <  SRR4302540.8690343/94‑1 (MQ=60)

    GCATCCGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGA                                                                                          >  SRR4302540.9260603/1‑94 (MQ=60)

     CATCCGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAA                                                                                         >  SRR4302540.7604417/1‑94 (MQ=60)

     CATCCGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAA                                                                                         >  SRR4302540.7006262/1‑94 (MQ=60)

      ATCCGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAG                                                                                        >  SRR4302540.9856461/1‑94 (MQ=60)

      ATCCGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAG                                                                                        >  SRR4302540.8733150/1‑94 (MQ=60)

      ATCCGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAG                                                                                        >  SRR4302540.4620571/1‑94 (MQ=60)

        CCGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTATCACCGAAGCG                                                                                      <  SRR4302540.7259642/94‑1 (MQ=60)

        CCGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCG                                                                                      >  SRR4302540.5752705/1‑94 (MQ=60)

        CCGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCG                                                                                      >  SRR4302540.5752706/1‑94 (MQ=60)

        CCGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCG                                                                                      <  SRR4302540.2016926/94‑1 (MQ=60)

        CCGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCG                                                                                      >  SRR4302540.787866/1‑94 (MQ=60)

         CGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGT                                                                                     <  SRR4302540.4524026/94‑1 (MQ=60)

         CGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGT                                                                                     <  SRR4302540.6810942/94‑1 (MQ=60)

         CGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGT                                                                                     >  SRR4302540.2996454/1‑94 (MQ=60)

         CGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGT                                                                                     >  SRR4302540.5702815/1‑94 (MQ=60)

          GCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTT                                                                                    >  SRR4302540.1352539/1‑94 (MQ=60)

           CTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTT                                                                                   >  SRR4302540.4391904/1‑94 (MQ=60)

            TTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTC                                                                                  <  SRR4302540.7901408/94‑1 (MQ=60)

             TTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCC                                                                                 >  SRR4302540.7487846/1‑94 (MQ=60)

              TTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCC                                                                                <  SRR4302540.1741142/94‑1 (MQ=60)

              TTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCC                                                                                >  SRR4302540.2734918/1‑94 (MQ=60)

               TTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCC                                                                               <  SRR4302540.2910341/94‑1 (MQ=60)

               TTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCC                                                                               <  SRR4302540.3326241/94‑1 (MQ=60)

               TTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCC                                                                               <  SRR4302540.9049031/94‑1 (MQ=60)

               TTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCC                                                                               <  SRR4302540.8180955/94‑1 (MQ=60)

               TTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCC                                                                               >  SRR4302540.8301306/1‑94 (MQ=60)

               TTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCC                                                                               <  SRR4302540.6927222/94‑1 (MQ=60)

               TTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCC                                                                               <  SRR4302540.5782508/94‑1 (MQ=60)

               TTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCC                                                                               <  SRR4302540.6717856/94‑1 (MQ=60)

                 GCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGC                                                                             <  SRR4302540.9573300/94‑1 (MQ=60)

                  CCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCG                                                                            <  SRR4302540.8845258/94‑1 (MQ=60)

                  CCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCG                                                                            >  SRR4302540.9621779/1‑94 (MQ=60)

                  CCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCG                                                                            >  SRR4302540.5137187/1‑94 (MQ=60)

                   CCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGG                                                                           <  SRR4302540.5056243/94‑1 (MQ=60)

                    CGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGT                                                                          <  SRR4302540.4459323/94‑1 (MQ=60)

                    CGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGT                                                                          <  SRR4302540.6578864/94‑1 (MQ=60)

                    CGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGG                                                                          >  SRR4302540.1827481/1‑94 (MQ=60)

                     GTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTG                                                                         >  SRR4302540.4819563/1‑94 (MQ=60)

                     GTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTG                                                                         >  SRR4302540.3714443/1‑94 (MQ=60)

                     GTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCAGGGTAGTAAATGGATTACCACCGAAGCGTTCCCCCGCGGCG                                                                         >  SRR4302540.7361699/1‑94 (MQ=60)

                     CTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTG                                                                         <  SRR4302540.2295963/94‑1 (MQ=60)

                      TTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGT                                                                        <  SRR4302540.4764379/94‑1 (MQ=60)

                      TTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGT                                                                        >  SRR4302540.7016141/1‑94 (MQ=60)

                      TTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGT                                                                        >  SRR4302540.7446746/1‑94 (MQ=60)

                      TTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGT                                                                        >  SRR4302540.3952090/1‑94 (MQ=60)

                      TTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGT                                                                        >  SRR4302540.1065850/1‑94 (MQ=60)

                       TCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGgt                                                                       >  SRR4302540.2273472/1‑92 (MQ=60)

                       TCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTA                                                                       >  SRR4302540.6679215/1‑94 (MQ=60)

                       TCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTA                                                                       >  SRR4302540.5899217/1‑94 (MQ=60)

                       TCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTA                                                                       >  SRR4302540.4390497/1‑94 (MQ=60)

                        CTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTAT                                                                      >  SRR4302540.2550492/1‑94 (MQ=60)

                         TCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATC                                                                     >  SRR4302540.878991/1‑94 (MQ=60)

                          CGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCC                                                                    >  SRR4302540.3047124/1‑94 (MQ=60)

                            AAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCA                                                                  >  SRR4302540.1150134/1‑94 (MQ=60)

                            AAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCA                                                                  <  SRR4302540.6446039/94‑1 (MQ=60)

                             AAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAG                                                                 <  SRR4302540.3848184/94‑1 (MQ=60)

                              AGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGG                                                                <  SRR4302540.1496100/94‑1 (MQ=60)

                              AGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGG                                                                <  SRR4302540.6651923/94‑1 (MQ=60)

                              AGCAGTCAGAAGTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGTATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGG                                                                <  SRR4302540.190289/94‑1 (MQ=60)

                               GCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGA                                                               >  SRR4302540.6687538/1‑94 (MQ=60)

                                CAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGAT                                                              <  SRR4302540.9457006/94‑1 (MQ=60)

                                CAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATCACCACCGAAGCGTCTCCCCGCGGTGTATCCCAGGAT                                                              <  SRR4302540.1842786/94‑1 (MQ=60)

                                 AGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATT                                                             >  SRR4302540.8175500/1‑94 (MQ=60)

                                  GTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTA                                                            >  SRR4302540.985494/1‑94 (MQ=60)

                                  GTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTA                                                            >  SRR4302540.3598839/1‑94 (MQ=60)

                                  GTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTA                                                            >  SRR4302540.9244028/1‑94 (MQ=60)

                                  GTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTA                                                            >  SRR4302540.8602702/1‑94 (MQ=60)

                                    CAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATC                                                          <  SRR4302540.1942611/94‑1 (MQ=60)

                                     AGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCG                                                         <  SRR4302540.3860041/94‑1 (MQ=60)

                                     AGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCG                                                         >  SRR4302540.2691879/1‑94 (MQ=60)

                                     AGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCG                                                         >  SRR4302540.5599080/1‑94 (MQ=60)

                                      GAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGG                                                        <  SRR4302540.4320581/94‑1 (MQ=60)

                                      GAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGG                                                        >  SRR4302540.9340297/1‑94 (MQ=60)

                                        ATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGA                                                      <  SRR4302540.8786693/94‑1 (MQ=60)

                                        ATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGA                                                      >  SRR4302540.1630453/1‑94 (MQ=60)

                                        ATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGA                                                      >  SRR4302540.1630454/1‑94 (MQ=60)

                                        ATTAATGGATGCACTAACGCTCCACCAATCACCATGGAAGTACATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCACAGGATTATCAGGA                                                      <  SRR4302540.9059678/94‑1 (MQ=60)

                                         TTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAA                                                     <  SRR4302540.8625956/94‑1 (MQ=60)

                                         TTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAA                                                     >  SRR4302540.2084124/1‑94 (MQ=60)

                                         TTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAA                                                     >  SRR4302540.345173/1‑94 (MQ=60)

                                         TTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAA                                                     <  SRR4302540.6732771/94‑1 (MQ=60)

                                         TTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCAAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAA                                                     >  SRR4302540.2885712/1‑94 (MQ=60)

                                         TTAATGGATACACTAACGCTCAACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAA                                                     >  SRR4302540.7705960/1‑94 (MQ=60)

                                          TCATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAG                                                    <  SRR4302540.3029381/94‑1 (MQ=60)

                                          TAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAG                                                    <  SRR4302540.365354/94‑1 (MQ=60)

                                           AATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGA                                                   >  SRR4302540.2621970/1‑94 (MQ=60)

                                           AATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGA                                                   <  SRR4302540.7088558/94‑1 (MQ=60)

                                           AATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGA                                                   >  SRR4302540.141647/1‑94 (MQ=60)

                                           AATGGATGCACTAACGCTCCACCAATCACCACGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGA                                                   >  SRR4302540.5224621/1‑94 (MQ=60)

                                            ATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAA                                                  >  SRR4302540.3417996/1‑94 (MQ=60)

                                             TGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAAC                                                 <  SRR4302540.2135010/94‑1 (MQ=60)

                                             TGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAAC                                                 >  SRR4302540.2986544/1‑94 (MQ=60)

                                             TGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAAC                                                 >  SRR4302540.3301668/1‑94 (MQ=60)

                                              GGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACC                                                <  SRR4302540.1506083/94‑1 (MQ=60)

                                              GGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACC                                                >  SRR4302540.9525644/1‑94 (MQ=60)

                                              GGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACC                                                >  SRR4302540.6309259/1‑94 (MQ=60)

                                               GATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCA                                               >  SRR4302540.8401858/1‑94 (MQ=60)

                                               GATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCA                                               <  SRR4302540.4292995/94‑1 (MQ=60)

                                                  GCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAA                                            <  SRR4302540.2449644/94‑1 (MQ=60)

                                                   CACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAAC                                           <  SRR4302540.5428716/94‑1 (MQ=60)

                                                    ACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACA                                          >  SRR4302540.8864914/1‑94 (MQ=60)

                                                    ACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACA                                          <  SRR4302540.4561639/94‑1 (MQ=60)

                                                    ACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACA                                          >  SRR4302540.2001852/1‑94 (MQ=60)

                                                    ACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACA                                          <  SRR4302540.604299/94‑1 (MQ=60)

                                                     CTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAA                                         <  SRR4302540.927319/94‑1 (MQ=60)

                                                     CTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAA                                         <  SRR4302540.3255708/94‑1 (MQ=60)

                                                     CTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAA                                         >  SRR4302540.517539/1‑94 (MQ=60)

                                                      TAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAG                                        <  SRR4302540.5948938/94‑1 (MQ=60)

                                                      TAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAG                                        <  SRR4302540.8147163/94‑1 (MQ=60)

                                                      TAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAG                                        >  SRR4302540.1082288/1‑94 (MQ=60)

                                                      TAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAG                                        >  SRR4302540.5650776/1‑94 (MQ=60)

                                                      TAACGCTCCACCAATCACCATGGCAGTAAACGGATTACCACCGAAGCGTTTCCCCGCTGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAG                                        <  SRR4302540.1346591/94‑1 (MQ=60)

                                                        ACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGC                                      >  SRR4302540.2499948/1‑94 (MQ=60)

                                                         CGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGCAGAACCAAAACAAGGCA                                     >  SRR4302540.10040462/1‑94 (MQ=60)

                                                         CGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCA                                     <  SRR4302540.2276625/94‑1 (MQ=60)

                                                          GCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCAT                                    >  SRR4302540.385082/1‑94 (MQ=60)

                                                          GCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCAT                                    >  SRR4302540.6161225/1‑94 (MQ=60)

                                                          GCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCAT                                    >  SRR4302540.9153016/1‑94 (MQ=60)

                                                          GCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCAT                                    >  SRR4302540.5440652/1‑94 (MQ=60)

                                                          GCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATACCAGGATTATCGGGAAGAACCAAAACAAAGCAT                                    >  SRR4302540.4984744/1‑94 (MQ=60)

                                                          GCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGCGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCAT                                    >  SRR4302540.8059833/1‑94 (MQ=60)

                                                            TCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCA                                  >  SRR4302540.7399570/1‑94 (MQ=60)

                                                             CCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAACACAAGGCATCAC                                 >  SRR4302540.1065771/1‑94 (MQ=60)

                                                             CCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCAC                                 <  SRR4302540.8650423/94‑1 (MQ=60)

                                                             CCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCAC                                 <  SRR4302540.6117500/94‑1 (MQ=60)

                                                             CCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCAC                                 <  SRR4302540.3198268/94‑1 (MQ=60)

                                                               cctAATCACCATGGCAGTAAATGGATTACCACCGAAGCTTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTG                               <  SRR4302540.3747588/91‑1 (MQ=60)

                                                               ACCAATCACCATGGCAGTAAATGGATTCCCACCGAAGCGTTTCCCCGCGGGGTATACCAGGATTCTCGGGAAGACCCAAAccaagccatacctg                               >  SRR4302540.9775535/1‑80 (MQ=60)

                                                               ACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTG                               >  SRR4302540.3892284/1‑94 (MQ=60)

                                                               ACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTG                               <  SRR4302540.4193717/94‑1 (MQ=60)

                                                               ACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTG                               <  SRR4302540.4193718/94‑1 (MQ=60)

                                                                CCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGG                              <  SRR4302540.10043309/94‑1 (MQ=60)

                                                                CCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTGTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGG                              <  SRR4302540.1535234/94‑1 (MQ=60)

                                                                 CAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACaaaaccaaggaacaactggc                             >  SRR4302540.2003299/1‑74 (MQ=60)

                                                                 CAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGC                             <  SRR4302540.4031668/94‑1 (MQ=60)

                                                                 CAATCACCATGGCAGTAAATGGATTAACACCGAAGCGTTTCCCCGCGGGGTATCCCAGGATTATCGGGAAGAACCCAAACAAGGCATCACTGCC                             >  SRR4302540.1845212/1‑94 (MQ=60)

                                                                  AATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCG                            <  SRR4302540.10008533/94‑1 (MQ=60)

                                                                  AATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCG                            <  SRR4302540.639051/94‑1 (MQ=60)

                                                                  AATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTGCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCG                            <  SRR4302540.4734050/94‑1 (MQ=60)

                                                                   ATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGC                           >  SRR4302540.8539883/1‑94 (MQ=60)

                                                                    TCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCT                          <  SRR4302540.4642404/94‑1 (MQ=60)

                                                                    ACACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCT                          <  SRR4302540.8126699/94‑1 (MQ=60)

                                                                      ACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGA                        >  SRR4302540.10128644/1‑94 (MQ=60)

                                                                       CCATGGCAGTAAATGGTTTACCACCGCAGCGTTTCCCCGCGGTGTATCCCAGGCTTACGGGGAAGAACCAAAcaaagggatacctggcgcggac                       >  SRR4302540.8586374/1‑72 (MQ=48)

                                                                       CCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAA                       <  SRR4302540.5656181/94‑1 (MQ=60)

                                                                        CATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAAT                      <  SRR4302540.4863040/94‑1 (MQ=60)

                                                                         ATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATA                     <  SRR4302540.5845979/94‑1 (MQ=60)

                                                                         ATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATA                     <  SRR4302540.5577739/94‑1 (MQ=60)

                                                                          TGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAA                    >  SRR4302540.381512/1‑94 (MQ=60)

                                                                           GGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAA                   <  SRR4302540.2361499/94‑1 (MQ=60)

                                                                           GGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAA                   <  SRR4302540.8967286/94‑1 (MQ=60)

                                                                           GGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAA                   <  SRR4302540.3558091/94‑1 (MQ=60)

                                                                             CAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAAT                 <  SRR4302540.2758096/94‑1 (MQ=60)

                                                                              AGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATT                >  SRR4302540.9493370/1‑94 (MQ=60)

                                                                              AGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATT                >  SRR4302540.5292997/1‑94 (MQ=60)

                                                                              AGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATT                >  SRR4302540.5292998/1‑94 (MQ=60)

                                                                              AGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATT                <  SRR4302540.805580/94‑1 (MQ=60)

                                                                              AGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATT                >  SRR4302540.7046426/1‑94 (MQ=60)

                                                                              AGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATT                <  SRR4302540.2116059/94‑1 (MQ=60)

                                                                              AGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATT                <  SRR4302540.2679101/94‑1 (MQ=60)

                                                                               GTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGATTAAAATTA               >  SRR4302540.4280746/1‑94 (MQ=60)

                                                                               GTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTA               >  SRR4302540.8447660/1‑94 (MQ=60)

                                                                               GTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTA               <  SRR4302540.7360529/94‑1 (MQ=60)

                                                                               GTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTA               >  SRR4302540.3427605/1‑94 (MQ=60)

                                                                                TAAATGGACTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAA              <  SRR4302540.7495288/94‑1 (MQ=60)

                                                                                 AAATGGATTACCACCGAAGGGTTTCCCCGCGGTGTATCCCATGATTATCGGGAAGAACCAGAACAAGGGATCACTGGCGCTGCATAAAAATAAA             >  SRR4302540.6473976/1‑94 (MQ=60)

                                                                                 AAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAA             >  SRR4302540.7547160/1‑94 (MQ=60)

                                                                                 AAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAA             >  SRR4302540.6473973/1‑94 (MQ=60)

                                                                                 AAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAA             <  SRR4302540.5989535/94‑1 (MQ=60)

                                                                                 AAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGCATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAA             >  SRR4302540.8286183/1‑94 (MQ=60)

                                                                                  AATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAAT            <  SRR4302540.5811060/94‑1 (MQ=60)

                                                                                  AATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAAT            <  SRR4302540.4087449/94‑1 (MQ=60)

                                                                                   ATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATA           <  SRR4302540.8619731/94‑1 (MQ=60)

                                                                                    TGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATAA          <  SRR4302540.3255991/94‑1 (MQ=60)

                                                                                    TGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATAA          <  SRR4302540.3733128/94‑1 (MQ=60)

                                                                                    TGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATAA          <  SRR4302540.10016803/94‑1 (MQ=60)

                                                                                    TGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATAA          <  SRR4302540.4601397/94‑1 (MQ=60)

                                                                                     GGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATAAG         <  SRR4302540.6175015/94‑1 (MQ=60)

                                                                                     GGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATAAG         <  SRR4302540.6507487/94‑1 (MQ=60)

                                                                                     GGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATAAG         <  SRR4302540.10071054/94‑1 (MQ=60)

                                                                                      GATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATAAGT        <  SRR4302540.3504509/94‑1 (MQ=60)

                                                                                      GATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATAAGT        <  SRR4302540.3504508/94‑1 (MQ=60)

                                                                                      GATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATAAGT        <  SRR4302540.3389759/94‑1 (MQ=60)

                                                                                      GATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATAAGA        >  SRR4302540.9022435/1‑94 (MQ=60)

                                                                                       ATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATAAGTA       <  SRR4302540.8617161/94‑1 (MQ=60)

                                                                                       ATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATAAGTA       <  SRR4302540.1896733/94‑1 (MQ=60)

                                                                                        TTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATAAGTAC      <  SRR4302540.7200049/94‑1 (MQ=60)

                                                                                         TACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATAAGTACC     >  SRR4302540.4731397/1‑94 (MQ=60)

                                                                                         TACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATAAGTACC     <  SRR4302540.571770/94‑1 (MQ=60)

                                                                                           CCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATAAGTACCAC   <  SRR4302540.5537807/94‑1 (MQ=60)

                                                                                           CCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATAAGTACCAC   <  SRR4302540.5537808/94‑1 (MQ=60)

                                                                                            CACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATAAGTACCACT  >  SRR4302540.4388210/1‑94 (MQ=60)

CAGCGCATCCGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCGCCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATAAGTACCACT  >  NC_000913/3902629‑3902814

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`