Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1624	250.6	12620048	98.0%	12367647	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,902,722	G→A	G168G (GGC→GGT)	bglF ←	PTS system beta‑glucosides‑specific enzyme IIABC component

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,902,722	0	G	A	100.0%	862.8 / NA	237	G168G (GGC→GGT)	bglF	PTS system beta‑glucosides‑specific enzyme IIABC component
Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (122/115); total (122/115)

Only 100 of 243 total aligned reads displayed.

GCATCCGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCGCCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATAAGTAC  >  NC_000913/3902633‑3902810

gcATCCGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTAccaccg                                                                                       >  2:1678565/1‑93 (MQ=255)

gcATCCGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTAccaccg                                                                                       >  2:5283820/1‑93 (MQ=255)

  aTCCGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGaa                                                                                     <  1:3673467/93‑1 (MQ=255)

  aTCCGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGaa                                                                                     >  2:5035967/1‑93 (MQ=255)

  aTCCGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGaa                                                                                     >  1:4259294/1‑93 (MQ=255)

  aTCCGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGaa                                                                                     <  1:179242/93‑1 (MQ=255)

   tCCGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAg                                                                                    >  1:2179401/1‑93 (MQ=255)

   tCCGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAg                                                                                    >  1:3490765/1‑93 (MQ=255)

   tCCGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAg                                                                                    >  1:1870980/1‑93 (MQ=255)

    ccGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGc                                                                                   >  2:4365728/1‑93 (MQ=255)

      gCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGt                                                                                 <  1:2217994/93‑1 (MQ=255)

      gCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGt                                                                                 >  1:293003/1‑93 (MQ=255)

       cTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGtt                                                                                <  1:4496664/93‑1 (MQ=255)

       cTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGtt                                                                                <  1:4656720/93‑1 (MQ=255)

       cTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGtt                                                                                >  1:5047166/1‑93 (MQ=255)

       cTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGtt                                                                                >  1:6277721/1‑93 (MQ=255)

        tttttGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGttt                                                                               >  1:1495503/1‑93 (MQ=255)

         ttttGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTc                                                                              >  2:6236585/1‑93 (MQ=255)

         ttttGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTc                                                                              >  2:18988/1‑93 (MQ=255)

          tttGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTcc                                                                             <  2:536781/93‑1 (MQ=255)

           ttGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTccc                                                                            <  2:490576/93‑1 (MQ=255)

               ccGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCcgcg                                                                        <  2:4318995/93‑1 (MQ=255)

               ccGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCcgcg                                                                        >  1:4396018/1‑93 (MQ=255)

                cGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCgg                                                                       >  2:5800316/1‑93 (MQ=255)

                  ttCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGgtg                                                                     >  2:1194655/1‑93 (MQ=255)

                  ttCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGgtg                                                                     >  2:3118901/1‑93 (MQ=255)

                    ctcGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTGCCACCGAAGCGTTTCCCCGCGGTGTa                                                                   <  1:3117962/93‑1 (MQ=255)

                     tcGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTAt                                                                  >  2:2620825/1‑93 (MQ=255)

                     tcGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACAACCGAAGCGTTTCCCCGCGgtgcct                                                                  >  2:668591/1‑90 (MQ=255)

                      cGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATc                                                                 >  2:4156011/1‑93 (MQ=255)

                       gAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATcc                                                                >  2:619289/1‑93 (MQ=255)

                        aaaGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATccc                                                               >  2:6137564/1‑93 (MQ=255)

                         aaGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCa                                                              <  1:591115/93‑1 (MQ=255)

                         aaGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCa                                                              >  1:1004764/1‑93 (MQ=255)

                         aaGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCa                                                              >  1:4136337/1‑93 (MQ=255)

                         aaGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCa                                                              >  2:268045/1‑93 (MQ=255)

                         aaGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCa                                                              >  1:1071483/1‑93 (MQ=255)

                          aGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAg                                                             >  2:1744514/1‑93 (MQ=255)

                          aGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAg                                                             <  2:2295806/93‑1 (MQ=255)

                          aGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAg                                                             >  1:1722804/1‑93 (MQ=255)

                          aGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAg                                                             <  1:63930/93‑1 (MQ=255)

                           gCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAgg                                                            <  2:4023392/93‑1 (MQ=255)

                            cAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGa                                                           <  1:6034120/93‑1 (MQ=255)

                               tCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTa                                                        <  2:108532/93‑1 (MQ=255)

                                cAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTAt                                                       <  1:1627008/93‑1 (MQ=255)

                                 aGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATc                                                      >  1:827027/1‑93 (MQ=255)

                                 aGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATc                                                      <  2:2976424/93‑1 (MQ=255)

                                 aGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATc                                                      >  1:3554857/1‑93 (MQ=255)

                                  gAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCg                                                     >  1:5818049/1‑93 (MQ=255)

                                  gAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCg                                                     >  1:3174334/1‑93 (MQ=255)

                                     ttAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGga                                                  >  2:2505374/1‑93 (MQ=255)

                                       aaTGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGgaag                                                >  1:2357200/1‑93 (MQ=255)

                                        aTGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGgaaga                                               <  2:5669379/93‑1 (MQ=255)

                                        aTGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGgaaga                                               <  2:1441127/93‑1 (MQ=255)

                                             tGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCaa                                          <  2:3696791/93‑1 (MQ=255)

                                             tGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCaa                                          >  2:865268/1‑93 (MQ=255)

                                              gCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCaaa                                         >  2:1635292/1‑93 (MQ=255)

                                               cACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCaaaa                                        <  2:1322945/93‑1 (MQ=255)

                                                aCTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAAc                                       >  1:4883425/1‑93 (MQ=255)

                                                 cTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACa                                      >  1:5345022/1‑93 (MQ=255)

                                                  tAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACaa                                     <  2:3212301/93‑1 (MQ=255)

                                                  tAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACaa                                     <  1:2477573/93‑1 (MQ=255)

                                                  tAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACaa                                     <  2:2450316/93‑1 (MQ=255)

                                                  tAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACaa                                     <  1:1284193/93‑1 (MQ=255)

                                                  tAACCCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACaa                                     <  2:2425828/93‑1 (MQ=255)

                                                   aaCGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAg                                    >  2:4786254/1‑93 (MQ=255)

                                                    aCGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAgg                                   >  1:4778240/1‑93 (MQ=255)

                                                     cGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGc                                  <  1:6176134/93‑1 (MQ=255)

                                                      gCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCa                                 <  1:1051873/93‑1 (MQ=255)

                                                      gCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCa                                 <  1:5038509/93‑1 (MQ=255)

                                                      gCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCa                                 >  1:5680076/1‑93 (MQ=255)

                                                         ccaccaATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCa                              >  2:339580/1‑93 (MQ=255)

                                                         ccaccaATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCa                              >  1:362902/1‑93 (MQ=255)

                                                          caccaATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCAc                             >  2:3578684/1‑93 (MQ=255)

                                                           accaATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACt                            >  1:2103767/1‑93 (MQ=255)

                                                             caATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTgg                          <  2:778814/93‑1 (MQ=255)

                                                             caATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTgg                          <  2:5913224/93‑1 (MQ=255)

                                                              aaTCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGgc                         <  2:5094260/93‑1 (MQ=255)

                                                                tCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGgcgc                       >  1:5141821/1‑93 (MQ=255)

                                                                    cATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGaa                   <  2:5251864/93‑1 (MQ=255)

                                                                         cAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATaaaa              <  1:3429139/93‑1 (MQ=255)

                                                                           gTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAAtt            <  2:4699003/93‑1 (MQ=255)

                                                                           gTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAAtt            >  1:5437719/1‑93 (MQ=255)

                                                                            tAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTa           >  2:5787316/1‑93 (MQ=255)

                                                                            tAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTa           >  1:2659535/1‑93 (MQ=255)

                                                                            tAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTa           >  1:5624902/1‑93 (MQ=255)

                                                                             aaaTGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTaa          <  1:3780917/93‑1 (MQ=255)

                                                                              aaTGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCATGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTaaa         >  2:2016652/1‑93 (MQ=255)

                                                                              aaTGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTaaa         >  1:3932716/1‑93 (MQ=255)

                                                                               aTGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAAt        >  2:2795584/1‑93 (MQ=255)

                                                                                tGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATa       <  1:881190/93‑1 (MQ=255)

                                                                                tGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATa       >  1:2830694/1‑93 (MQ=255)

                                                                                tGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATa       >  2:152189/1‑93 (MQ=255)

                                                                                 ggATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATaa      >  2:386064/1‑93 (MQ=255)

                                                                                 ggATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATaa      <  2:3623150/93‑1 (MQ=255)

                                                                                 ggATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATaa      <  2:3236356/93‑1 (MQ=255)

                                                                                  gATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATAAg     <  1:2064467/93‑1 (MQ=255)

                                                                                  gATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATAAg     >  1:1308602/1‑93 (MQ=255)

                                                                                    ttACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATAAGTa   >  1:5891029/1‑93 (MQ=255)

                                                                                    ttACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATAAGTa   <  1:970863/93‑1 (MQ=255)

GCATCCGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCGCCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATAAGTAC  >  NC_000913/3902633‑3902810

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 24 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CAGCGCATCCGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCGCCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATAAGTACCACT  >  NC_000913/3902629‑3902814

CAGCGCATCCGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCA                                                                                              >  SRR4302533.1742279/1‑94 (MQ=60)

CAGCGCATCCGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCA                                                                                              >  SRR4302533.246677/1‑94 (MQ=60)

CAGCGCATCCGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCA                                                                                              <  SRR4302533.6066944/94‑1 (MQ=60)

CAGCGCATCCGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCA                                                                                              >  SRR4302533.1918090/1‑94 (MQ=60)

 AGCGCATCCGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCAC                                                                                             <  SRR4302533.4743921/94‑1 (MQ=60)

 AGCGCATCCGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCAC                                                                                             <  SRR4302533.4750293/94‑1 (MQ=60)

  GCGCATCCGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACC                                                                                            <  SRR4302533.5775824/94‑1 (MQ=60)

  GCGCATCCGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACC                                                                                            <  SRR4302533.5262463/94‑1 (MQ=60)

    GCATCCGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGA                                                                                          >  SRR4302533.2427696/1‑94 (MQ=60)

     CATCCGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAA                                                                                         >  SRR4302533.2263812/1‑94 (MQ=60)

     CATCCGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAA                                                                                         >  SRR4302533.2191100/1‑94 (MQ=60)

     CATCCGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAA                                                                                         >  SRR4302533.4284963/1‑94 (MQ=60)

      ATCCGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCATCGAAG                                                                                        >  SRR4302533.639034/1‑94 (MQ=60)

      ATCCGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAG                                                                                        >  SRR4302533.5043581/1‑94 (MQ=60)

      ATCCGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAG                                                                                        <  SRR4302533.49358/94‑1 (MQ=60)

      ATCCGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAG                                                                                        >  SRR4302533.4755944/1‑94 (MQ=60)

      ATCCGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAG                                                                                        >  SRR4302533.1882384/1‑94 (MQ=60)

      ATCCGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAG                                                                                        >  SRR4302533.2192838/1‑94 (MQ=60)

      ATCCGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAG                                                                                        <  SRR4302533.180365/94‑1 (MQ=60)

      ATCCGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAG                                                                                        >  SRR4302533.3512295/1‑94 (MQ=60)

      ATCCGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAG                                                                                        <  SRR4302533.3696042/94‑1 (MQ=60)

        CCGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCG                                                                                      >  SRR4302533.3736617/1‑94 (MQ=60)

         CGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGGTCCACCAATCACCATGGCAGTAAATCGATTACCACCGAAGCGT                                                                                     >  SRR4302533.3635860/1‑94 (MQ=60)

         CGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGT                                                                                     >  SRR4302533.294793/1‑94 (MQ=60)

          GCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTT                                                                                    >  SRR4302533.5077696/1‑94 (MQ=60)

          GCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTT                                                                                    >  SRR4302533.4492002/1‑94 (MQ=60)

          GCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTT                                                                                    >  SRR4302533.6315202/1‑94 (MQ=60)

          GCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTT                                                                                    <  SRR4302533.2231686/94‑1 (MQ=60)

           CTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTT                                                                                   <  SRR4302533.4684940/94‑1 (MQ=60)

           CTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTT                                                                                   >  SRR4302533.1504514/1‑94 (MQ=60)

           CTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTT                                                                                   <  SRR4302533.4523894/94‑1 (MQ=60)

             TTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCC                                                                                 >  SRR4302533.417741/1‑94 (MQ=60)

             TTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCC                                                                                 <  SRR4302533.286373/94‑1 (MQ=60)

                  CCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCG                                                                            >  SRR4302533.4422559/1‑94 (MQ=60)

                   CCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGG                                                                           <  SRR4302533.398878/94‑1 (MQ=60)

                    CGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGT                                                                          <  SRR4302533.2213688/94‑1 (MQ=60)

                    CGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGT                                                                          <  SRR4302533.1427909/94‑1 (MQ=60)

                    CGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGT                                                                          <  SRR4302533.3516552/94‑1 (MQ=60)

                    CGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGT                                                                          <  SRR4302533.358434/94‑1 (MQ=60)

                      TTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGT                                                                        >  SRR4302533.998121/1‑94 (MQ=60)

                       TCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTA                                                                       <  SRR4302533.806035/94‑1 (MQ=60)

                        CTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTGCCACCGAAGCGTTTCCCCGCGGTGTAT                                                                      <  SRR4302533.3137134/94‑1 (MQ=60)

                        CTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTAT                                                                      <  SRR4302533.1421520/94‑1 (MQ=60)

                         TCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATC                                                                     >  SRR4302533.5076856/1‑94 (MQ=60)

                          CGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCC                                                                    <  SRR4302533.6013471/94‑1 (MQ=60)

                           GAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCC                                                                   >  SRR4302533.4438197/1‑94 (MQ=60)

                           GAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCC                                                                   >  SRR4302533.465464/1‑94 (MQ=60)

                           GAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCC                                                                   <  SRR4302533.2990560/94‑1 (MQ=60)

                           GAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCC                                                                   >  SRR4302533.3964084/1‑94 (MQ=60)

                            AAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCA                                                                  >  SRR4302533.1077797/1‑94 (MQ=60)

                            AAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCA                                                                  >  SRR4302533.1010641/1‑94 (MQ=60)

                            AAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCA                                                                  >  SRR4302533.4161440/1‑94 (MQ=60)

                             AAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAG                                                                 <  SRR4302533.594605/94‑1 (MQ=60)

                             AAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAG                                                                 >  SRR4302533.1733250/1‑94 (MQ=60)

                             AAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAG                                                                 >  SRR4302533.181713/1‑94 (MQ=60)

                              AGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGG                                                                >  SRR4302533.878716/1‑94 (MQ=60)

                              AGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGG                                                                <  SRR4302533.3793175/94‑1 (MQ=60)

                              AGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGG                                                                <  SRR4302533.2664459/94‑1 (MQ=60)

                              AGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGG                                                                <  SRR4302533.64346/94‑1 (MQ=60)

                               GCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGA                                                               <  SRR4302533.5351969/94‑1 (MQ=60)

                                CAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGAT                                                              <  SRR4302533.6070686/94‑1 (MQ=60)

                                    CAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATC                                                          <  SRR4302533.1636861/94‑1 (MQ=60)

                                    CAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATC                                                          >  SRR4302533.831880/1‑94 (MQ=60)

                                    CAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATC                                                          >  SRR4302533.3576765/1‑94 (MQ=60)

                                     AGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCG                                                         >  SRR4302533.5853195/1‑94 (MQ=60)

                                     AGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCG                                                         >  SRR4302533.3193868/1‑94 (MQ=60)

                                      GAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGG                                                        <  SRR4302533.2727706/94‑1 (MQ=60)

                                      GAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGG                                                        >  SRR4302533.6084175/1‑94 (MQ=60)

                                      GAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGG                                                        <  SRR4302533.1892296/94‑1 (MQ=60)

                                       AATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGG                                                       >  SRR4302533.812883/1‑94 (MQ=60)

                                        ATTAATGGATGCACTAACGCTCAACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGA                                                      <  SRR4302533.5841130/94‑1 (MQ=60)

                                         TTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAA                                                     >  SRR4302533.6062312/1‑94 (MQ=60)

                                         TTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAA                                                     >  SRR4302533.6294335/1‑94 (MQ=60)

                                         TTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAA                                                     <  SRR4302533.1279988/94‑1 (MQ=60)

                                          TAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAG                                                    >  SRR4302533.2371771/1‑94 (MQ=60)

                                           AATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGA                                                   >  SRR4302533.1061327/1‑94 (MQ=60)

                                            ATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAA                                                  <  SRR4302533.592608/94‑1 (MQ=60)

                                              GGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACC                                                >  SRR4302533.3201488/1‑94 (MQ=60)

                                               GATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCA                                               <  SRR4302533.6272386/94‑1 (MQ=60)

                                                ATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAA                                              >  SRR4302533.282281/1‑94 (MQ=60)

                                                   CACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAAC                                           >  SRR4302533.4913010/1‑94 (MQ=60)

                                                    ACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACA                                          >  SRR4302533.5377076/1‑94 (MQ=60)

                                                     CTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAA                                         >  SRR4302533.5735298/1‑94 (MQ=60)

                                                      TAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAG                                        <  SRR4302533.2492855/94‑1 (MQ=60)

                                                      TAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAG                                        <  SRR4302533.1291919/94‑1 (MQ=60)

                                                      TAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAG                                        <  SRR4302533.296424/94‑1 (MQ=60)

                                                      TAACGCTCCACCAATCACCATGGCACTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAG                                        <  SRR4302533.953433/94‑1 (MQ=60)

                                                       AACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGG                                       >  SRR4302533.4807183/1‑94 (MQ=60)

                                                         CGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCA                                     >  SRR4302533.5714384/1‑94 (MQ=60)

                                                         CGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCA                                     >  SRR4302533.5697750/1‑94 (MQ=60)

                                                         CGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCA                                     <  SRR4302533.6213242/94‑1 (MQ=60)

                                                          GCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCAT                                    <  SRR4302533.1058065/94‑1 (MQ=60)

                                                          GCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCAT                                    >  SRR4302533.2131068/1‑94 (MQ=60)

                                                          GCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCAT                                    <  SRR4302533.5069017/94‑1 (MQ=60)

                                                            TCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCA                                  >  SRR4302533.365109/1‑94 (MQ=60)

                                                            TCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCA                                  <  SRR4302533.1593187/94‑1 (MQ=60)

                                                             CCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCAC                                 <  SRR4302533.4815788/94‑1 (MQ=60)

                                                              CACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACT                                >  SRR4302533.2116736/1‑94 (MQ=60)

                                                                CCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGG                              <  SRR4302533.527258/94‑1 (MQ=60)

                                                                CCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGG                              <  SRR4302533.3191037/94‑1 (MQ=60)

                                                                CCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGG                              >  SRR4302533.5654045/1‑94 (MQ=60)

                                                                  AATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCG                            <  SRR4302533.2240300/94‑1 (MQ=60)

                                                                  AATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCG                            >  SRR4302533.165910/1‑94 (MQ=60)

                                                                   ATCACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGC                           >  SRR4302533.5172895/1‑94 (MQ=60)

                                                                     CACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTG                         <  SRR4302533.3483674/94‑1 (MQ=60)

                                                                      ACCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGA                        <  SRR4302533.1689338/94‑1 (MQ=60)

                                                                       CCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAA                       >  SRR4302533.977511/1‑94 (MQ=60)

                                                                       CCATGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAA                       <  SRR4302533.5129061/94‑1 (MQ=60)

                                                                          TGGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAA                    <  SRR4302533.1012354/94‑1 (MQ=60)

                                                                           GGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAA                   >  SRR4302533.1295070/1‑94 (MQ=60)

                                                                           GGCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAA                   >  SRR4302533.3251504/1‑94 (MQ=60)

                                                                            GCAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAA                  <  SRR4302533.544503/94‑1 (MQ=60)

                                                                             CAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAAT                 >  SRR4302533.5897458/1‑94 (MQ=60)

                                                                             CAGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAAT                 <  SRR4302533.3450324/94‑1 (MQ=60)

                                                                              AGTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATT                >  SRR4302533.5470471/1‑94 (MQ=60)

                                                                               GTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTA               <  SRR4302533.118797/94‑1 (MQ=60)

                                                                               GTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTA               >  SRR4302533.2675868/1‑94 (MQ=60)

                                                                               GTAAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTA               >  SRR4302533.5658899/1‑94 (MQ=60)

                                                                                 AAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAA             >  SRR4302533.192357/1‑94 (MQ=60)

                                                                                 AAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAA             >  SRR4302533.3956723/1‑94 (MQ=60)

                                                                                 AAATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAA             <  SRR4302533.3804077/94‑1 (MQ=60)

                                                                                  AATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAAT            <  SRR4302533.3653877/94‑1 (MQ=60)

                                                                                  AATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAAT            >  SRR4302533.4786322/1‑94 (MQ=60)

                                                                                   ATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATA           >  SRR4302533.2848115/1‑94 (MQ=60)

                                                                                   ATGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATA           >  SRR4302533.5486318/1‑94 (MQ=60)

                                                                                    TGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATAA          <  SRR4302533.4304807/94‑1 (MQ=60)

                                                                                    TGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATAA          <  SRR4302533.2091214/94‑1 (MQ=60)

                                                                                    TGGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATAA          <  SRR4302533.886364/94‑1 (MQ=60)

                                                                                     GGATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATAAG         >  SRR4302533.1316458/1‑94 (MQ=60)

                                                                                      GATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATAAGT        <  SRR4302533.2077192/94‑1 (MQ=60)

                                                                                       ATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATAAGTA       >  SRR4302533.5926615/1‑94 (MQ=60)

                                                                                       ATTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATAAGTA       >  SRR4302533.1759522/1‑94 (MQ=60)

                                                                                        TTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATAAGTAC      <  SRR4302533.3839335/94‑1 (MQ=60)

                                                                                        TTACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATAAGTAC      <  SRR4302533.976560/94‑1 (MQ=60)

                                                                                          ACCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATAAGTACCA    >  SRR4302533.5515106/1‑94 (MQ=60)

                                                                                           CCACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATAAGTACCAC   >  SRR4302533.4373256/1‑94 (MQ=60)

                                                                                            CACCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATAAGTACCACT  <  SRR4302533.5196458/94‑1 (MQ=60)

CAGCGCATCCGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCGCCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATAAGTACCACT  >  NC_000913/3902629‑3902814

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`