Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 1548 369.5 20095359 96.9% 19472402 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,937,205 A→G F345S (TTC→TCC)  yieO ← putative transport protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,937,2050AG92.5% 1567.3 / 84.5 564F345S (TTC→TCC) yieOputative transport protein
Reads supporting (aligned to +/- strand):  ref base A (23/19);  new base G (262/260);  total (285/279)
Fisher's exact test for biased strand distribution p-value = 6.32e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.60e-01

Only 100 of 571 total aligned reads displayed.

ATCGCGGTAAACTGCGTCGACATAGCCATCCCTAATATAAACAACGGCAAGATCAGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGAACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCACTAACGTATGGCGATAGCCCAGACGACGTAAGACTTGGGTAACCATCGAT  >  NC_000913/3937115‑3937294
                                                                                          |                                                                                         
aTCGCGGTAAACTGCGTCGACATAGCCATCCCTAATATAAACAACGGCAAGATCAGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGGAc                                                                                         >  2:2172383/1‑93 (MQ=255)
   gcgGTAAACTGCGTCGACATAGCCATCCCTAATATAAACAACGGTAAGATCAGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGGACTGa                                                                                      <  2:5255800/93‑1 (MQ=255)
   gcgGTAAACTGCGTCGACATAGCCATCCCTAATATAAACAACGGCAAGATCAGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGGACTGa                                                                                      <  1:87547/93‑1 (MQ=255)
   gcgGTAAACTGCGTCGACATAGCCATCCCTAATATAAACAACGGCAAGATCAGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGAACTGa                                                                                      <  1:8094347/93‑1 (MQ=255)
     ggTAAACTGCGTCGACATAGCCATCCCTAATATAAACAACGGCAAGATCAGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGc                                                                                    <  1:4957053/93‑1 (MQ=255)
      gTAAACTGCGTCGACATAGCCATCCCTAATATAAACAACGGCAAGATCAGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCg                                                                                   >  1:8934911/1‑93 (MQ=255)
       tAAACTGCGTCGACATAGCCATCCCTAATATAAACAACGGCAAGATCAGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGa                                                                                  >  2:5994782/1‑93 (MQ=255)
         aaCTGCGTCGACATAGCCATCCCTAATATAAACAACGGCAAGATCAGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATc                                                                                <  1:9857835/93‑1 (MQ=255)
           cTGCGTCGACATAGCCATCCCTAATATAAACAACGGCAAGATCAGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATCAt                                                                              <  1:7117124/93‑1 (MQ=255)
            tGCGTCGACATAGCCATCCCTAATATAAACAACGGCAAGATCAGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATCAtt                                                                             <  2:1418013/93‑1 (MQ=255)
             gCGTCGACATAGCCATCCCTAATATAAACAACGGCAAGATCAGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTa                                                                            >  2:6799/1‑93 (MQ=255)
             gCGTCGACATAGCCATCCCTAATATAAACAACGGCAAGATCAGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGAACTGAGCGATCATTa                                                                            >  1:8433374/1‑93 (MQ=255)
               gTCGACATAGCCATCCCTAATATAAACAACGGCAAGATCAGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGc                                                                          >  2:5562408/1‑93 (MQ=255)
                tCGACATAGCCATCCCTAATATAAACAACGGCAAGATCAGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGcc                                                                         >  2:3207620/1‑93 (MQ=255)
                 cGACATAGCCATCCCTAATATAAACAACGGCAAGATCAGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGccc                                                                        <  1:2049077/93‑1 (MQ=255)
                  gACATAGCCATCCCTAATATAAACAACGGCAAGATCAGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCa                                                                       >  2:5886679/1‑93 (MQ=255)
                   aCATAGCCATCCCTAATATAAACAACGGCAAGATCAGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCaa                                                                      <  2:5698421/93‑1 (MQ=255)
                    cATAGCCATCCCTAATATAAACAACGGCAAGATCAGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCaat                                                                     <  1:1219087/93‑1 (MQ=255)
                     aTAGCCATCCCTAATATAAACAACGGCAAGATCAGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCaata                                                                    <  2:6557527/93‑1 (MQ=255)
                      tAGCCATCCCTAATATAAACAACGGTAAGATCAGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCaataa                                                                   >  1:4342547/1‑93 (MQ=255)
                      tAGCCATCCCTAATATAAACAACGGCAAGATCAGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCaataa                                                                   >  2:1722157/1‑93 (MQ=255)
                       aGCCATCCCTAATATAAACAACGGCAAGATCAGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGAACTGAGCGATCATTAGCCCaataat                                                                  <  2:7611884/93‑1 (MQ=255)
                        gCCATCCCTAATATAAACAACCGCAAGATCAGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATc                                                                 >  1:1844572/1‑93 (MQ=255)
                          cATCCCTAATATAAACAACGGCAAGATCAGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCAc                                                               <  2:7306989/93‑1 (MQ=255)
                           aTCCCTAATATAAACAACGGCAAGATCAGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCAcc                                                              <  2:6072803/93‑1 (MQ=255)
                            tCCCTAATATAAATAACGGCAAGATCTGCATCCATATAGCCATTGCTGGTGATAGCAATGAGGACTGAGCGATCATTAGCCCAATAATCACCg                                                             >  2:8979767/1‑93 (MQ=255)
                            tCCCTAATATAAACAACGGCAAGATCAGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCg                                                             <  1:5402200/93‑1 (MQ=255)
                            tCCATAATATAAACAACGGCAAGATCAGCATCAATATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCg                                                             <  1:7255418/93‑1 (MQ=255)
                             cccTAATATAAACAACGGCAAGATCAGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGt                                                            >  1:5257348/1‑93 (MQ=255)
                             cccTAATATAAACAACGGCAAGATCAGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGt                                                            <  1:8583358/93‑1 (MQ=255)
                             cccTAATATAAACAACGGCAAGATCAGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGt                                                            >  2:8034271/1‑93 (MQ=255)
                              ccTAATATAAACAACGGCAAGATCAGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTg                                                           >  1:4846835/1‑93 (MQ=255)
                                   tataAACAACGGCAAGATCAGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATccc                                                      >  2:2918744/1‑93 (MQ=255)
                                   tataAACAACGGCAAGATCAGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATccc                                                      >  2:9889106/1‑93 (MQ=255)
                                   tataAACAACGGCAAGATCAGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATccc                                                      >  1:5891959/1‑93 (MQ=255)
                                   aataAACAACGGCAAGATCAGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATccc                                                      <  1:7874117/92‑1 (MQ=255)
                                     taAACAACGGCAAGATCAGCATCCATATAGCTATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCa                                                    <  2:1586392/93‑1 (MQ=255)
                                     taAACAACGGCAAGATCAGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCa                                                    <  1:6613315/93‑1 (MQ=255)
                                     taAACAACGGCAAGATCAGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCa                                                    >  2:10013328/1‑93 (MQ=255)
                                     taAACAACGGCAAGATCAGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCa                                                    >  1:9444707/1‑93 (MQ=255)
                                      aaaCAACGGCAAGATCAGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCAc                                                   <  2:6409268/93‑1 (MQ=255)
                                        acaacGGCAAGATCAGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCACTa                                                 <  1:1103317/93‑1 (MQ=255)
                                         caacGGCAAGATCAGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCACTaa                                                <  1:2644285/93‑1 (MQ=255)
                                         caacGGCAAGATCAGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCACTaa                                                <  1:4419358/93‑1 (MQ=255)
                                         caacGGCAAGATCAGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGAACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCACTaa                                                >  2:2536445/1‑93 (MQ=255)
                                          aacGGCAAGATCAGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCACTAAc                                               >  2:3814114/1‑93 (MQ=255)
                                             ggCAAGATCAGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCACTAACGTa                                            <  1:9269149/93‑1 (MQ=255)
                                             ggCAAGATCAGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGAACTGCGCGATCATTAGCCCAATAATCACCAAAATGCCCACTAACGTa                                            >  1:5747935/1‑93 (MQ=255)
                                              gCAAGATCAGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCACTAACGTAt                                           >  2:8482892/1‑93 (MQ=255)
                                              gCAAGATCAGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCACTAACGTAt                                           <  1:3738927/93‑1 (MQ=255)
                                              gCAAGATCAGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCACTAACGTAt                                           <  1:4060231/93‑1 (MQ=255)
                                              gCAAGATCAGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCACTAACGTAt                                           <  2:1624236/93‑1 (MQ=255)
                                               taaGATCAGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCACTAACGTATg                                          <  2:1988854/92‑1 (MQ=255)
                                                   aTCAGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCACTAACGTATGGCGa                                      >  1:602734/1‑93 (MQ=255)
                                                   aTCAGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCACTAACGTATGGCGa                                      >  2:2365105/1‑93 (MQ=255)
                                                    tCAGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCACTAACGTATGGCGAt                                     <  1:2781771/93‑1 (MQ=255)
                                                    tCAGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCACTAACGTATGGCGAt                                     >  2:4664768/1‑93 (MQ=255)
                                                    tCAGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCACTAACGTATGGCGAt                                     <  1:2987400/93‑1 (MQ=255)
                                                     cAGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCACTAACGTATGGCGATa                                    <  1:6509245/93‑1 (MQ=255)
                                                       gCATCCATATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCACTAACGTATGGCGATAGc                                  >  2:397555/1‑93 (MQ=255)
                                                        cATCCATATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCACTAACGTATGGCGATAGcc                                 >  2:9570848/1‑93 (MQ=255)
                                                        cATCCATATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCACTAACGTATGGCGATAGcc                                 <  2:3628374/93‑1 (MQ=255)
                                                          tCCATATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCACTAACGTATGGCGATAGCCCa                               >  1:8215665/1‑93 (MQ=255)
                                                          tCCATATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCACTAACGTATGGCGATAGCCCa                               <  1:3322550/93‑1 (MQ=255)
                                                          tCCATATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCACTAACGTATGGCGATAGCCCa                               >  1:7685116/1‑93 (MQ=255)
                                                            cATATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCACTAACGTATGGCGATAGCCCAga                             <  1:3567300/93‑1 (MQ=255)
                                                            cATATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCACTAACGTATGGCGATAGCCCAga                             <  2:1206976/93‑1 (MQ=255)
                                                            cATATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCACTAACGTATGGCGATAGCCCAga                             <  2:4492535/93‑1 (MQ=255)
                                                             atatAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCACTAACGTATGGCGATAGCCCAgac                            <  1:4223315/93‑1 (MQ=255)
                                                              tataGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCACTAACGTATGGCGATAGCCCAgacg                           >  1:3100168/1‑93 (MQ=255)
                                                              tataGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCACTAACGTATGGCGATAGCCCAgacg                           >  1:5621678/1‑93 (MQ=255)
                                                               ataGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCACTAACGTATGGCGATAGCCCAgacga                          <  2:8742196/93‑1 (MQ=255)
                                                                taGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCACTAACGTATGGCGATAGCCCAgacgac                         >  2:5066454/1‑93 (MQ=255)
                                                                taGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCACTAACGTATGGCGATAGCCCAgacgac                         >  2:5459895/1‑93 (MQ=255)
                                                                taGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCACTAACGTATGGCGATAGCCCAgacgac                         >  2:2698082/1‑93 (MQ=255)
                                                                  gCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCACTAACGTATGGCGATAGCCCAGACGACGt                       >  1:4661170/1‑93 (MQ=255)
                                                                   ccATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCACTAACGTATGGCGATAGCCCAGACGACGTa                      >  2:422465/1‑93 (MQ=255)
                                                                    cATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCACTAACGTATGGCGATAGCCCAGACGACGTaa                     >  2:4989253/1‑93 (MQ=255)
                                                                     aTTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCACTAACGTATGGCGATAGCCCAGACGACGTAAg                    <  1:1720006/93‑1 (MQ=255)
                                                                     aTTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCACTAACGTATGGCGATAGCCCAGACGACGTAAg                    <  2:7765245/93‑1 (MQ=255)
                                                                     aTTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCACTAACGTATGGCGATAGCCCAGACGACGTAAg                    <  1:1497991/93‑1 (MQ=255)
                                                                      ttGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCACTAACGTATGGCGATAGCCCAGACGACGTAAGa                   <  2:8879469/93‑1 (MQ=255)
                                                                      ttGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCACTAACGTATGGCGATAGCCCAGACGACGTAAGa                   <  2:7098550/93‑1 (MQ=255)
                                                                      ttGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCACTAACGTATGGCGATAGCCCAGACGACGTAAGa                   >  2:9763674/1‑93 (MQ=255)
                                                                      ttGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCACTAACGTATGGCGATAGCCCAGACGACGTAAGa                   >  1:6921520/1‑93 (MQ=255)
                                                                       tGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCACTAACGTATGGCGATAGCCCAGACGACGTAAGAc                  <  2:5764278/93‑1 (MQ=255)
                                                                       tGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCACTAACGTATGGCGATAGCCCAGACGACGTAAGAc                  >  1:8995952/1‑93 (MQ=255)
                                                                        gCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCACTAACGTATGGCGATAGCCCAGACGACGTAAGACt                 >  1:2496405/1‑93 (MQ=255)
                                                                        gCTGGTGATTGCAAAGAGAACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCACTAACGTATGGCGATAGCCCAGACGACGTAAGACt                 <  1:6254246/93‑1 (MQ=255)
                                                                          tGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCACTAACGTATGGCGATAGCCCAGACGACGTAAGACTTg               >  1:2158235/1‑93 (MQ=255)
                                                                          tGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCACTAACGTATGGCGATAGCCCAGACGACGTAAGACTTg               <  2:8342465/93‑1 (MQ=255)
                                                                          tGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCACTAACGTATGGCGATAGCCCAGACGACGTAAGACTTg               <  2:9238612/93‑1 (MQ=255)
                                                                           ggTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCACTAACGTATGGCGATAGCCCAGACGACGTAAGACTTgg              >  2:3469212/1‑93 (MQ=255)
                                                                            gTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCACTAACGTATGGCGATAGCCCAGACGACGTAAGACTTggg             <  1:4549943/93‑1 (MQ=255)
                                                                            gTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCACTAACGTATGGCGATAGCCCAGACGACGTAAGACTTggg             >  1:5221335/1‑93 (MQ=255)
                                                                             tGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCACTAACGTATGGCGATAGCCCAGACGACGTAAGACTTggga            >  1:6765643/1‑92 (MQ=255)
                                                                                ttGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCACTAACGTATGGCGATAGCCCAGACGACGTAAGACTTGGGTAAc         >  1:7507374/1‑93 (MQ=255)
                                                                                ttGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCACTAACGTATGGCGATAGCCCAGACGACGTAAGACTTGGGTAAc         >  2:625122/1‑93 (MQ=255)
                                                                                  gCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGAGCCCCACTAACGTATGGCGATAGCCCAGACGACGTAAGACTTGGGTAACCa       >  1:3969855/1‑93 (MQ=255)
                                                                                     aaGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCACTAACGTATGGCGATAGCCCAGACGACGTAAGACTTGGGTAACCATCg    >  1:9201979/1‑93 (MQ=255)
                                                                                          |                                                                                         
ATCGCGGTAAACTGCGTCGACATAGCCATCCCTAATATAAACAACGGCAAGATCAGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGAACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCACTAACGTATGGCGATAGCCCAGACGACGTAAGACTTGGGTAACCATCGAT  >  NC_000913/3937115‑3937294

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output Only 200 of 315 total aligned reads displayed.
ATTCATCGCGGTAAACTGCGTCGACATAGCCATCCCTAATATAAACAACGGCAAGATCAGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGAACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCACTAACGTATGGCGATAGCCCAGACGACGTAAGACTTGGGTAACCATCGATTTTG  >  NC_000913/3937111‑3937298
                                                                                              |                                                                                             
ATTC‑TCGCGGTAAACTGCGTCGACATAGCCATCCCTAATATAAACAACGGCAAGATCAGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGG                                                                                               >  SRR4302540.9123324/1‑94 (MQ=60)
 TTCATCGCGGTAAACTGCGTCGACATAGCCATCCCTAATATAAACAACGGCAAGATCAGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGG                                                                                               >  SRR4302540.2510083/1‑94 (MQ=60)
 TTCATCGCGGTAAACTGCGTCGACATAGCCATCCCTAATATAAACAACGGCAAGATCAGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGG                                                                                               <  SRR4302540.6300044/94‑1 (MQ=60)
 TTCATCGCGGTAAACTGCGTCGACATAGCCATCCCTAATATAAACAACGGCAAGATCAGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGG                                                                                               >  SRR4302540.8886353/1‑94 (MQ=60)
 TTCATCGCGGTAAACTGCGTCGACATAGCCATCCCTAATATAAACAACGGCAAGATCAGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGG                                                                                               <  SRR4302540.3179416/94‑1 (MQ=60)
  TCATCGCGGTAAACTGCGTCGACATAGCCATCCCTAATATAAACAACGGCAAGATCAGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGGA                                                                                              >  SRR4302540.139839/1‑94 (MQ=60)
  TCATCGCGGTAAACTGCGTCGACATAGCCATCCCTAATATAAACAACGGCAAGATCAGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGGA                                                                                              <  SRR4302540.2199608/94‑1 (MQ=60)
  TCATCGCGGTAAACTGCGTCGACATAGCCATCCCTAATATAAACAACGGCAAGATCAGCAGCCATATAGCCATTGCTGGTGATTGCAAAGAGGA                                                                                              <  SRR4302540.7921404/94‑1 (MQ=60)
   CATCGCGGTAAACTGCGTCGACATAGCCATCCCTAATATAAACAACGGCAAGATCAGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGGAC                                                                                             <  SRR4302540.352373/94‑1 (MQ=60)
   CATCGCGGTAAACTGCGTCGACATAGCCATCCCTAATATAAACAACGGCAAGATCAGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGGAC                                                                                             <  SRR4302540.7789400/94‑1 (MQ=60)
   CATCGCGGTAAACTGCGTCGACATAGCCATCCCTAATATAAACAACGGCAAGATCAGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGGAC                                                                                             <  SRR4302540.6610910/94‑1 (MQ=60)
    atccgcGTAAACTGCGTCGACATAGCCATCCCTAATATAAACAACGGCAAGATCAGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGGACT                                                                                            <  SRR4302540.4648238/88‑1 (MQ=60)
    CTCGCGGTAAACTGCGTCGACATAGCCATCCCTAATATAAACAACGGCAAGATCAGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGGACT                                                                                            <  SRR4302540.3136673/94‑1 (MQ=60)
    ATCGCGGTAAACTGCGTCGACATAGCCATCCCTAATATAAACAACGGTAAGATCAGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGGACT                                                                                            >  SRR4302540.8617980/1‑94 (MQ=60)
    ATCGCGGTAAACTGCGTCGACATAGCCATCCCTAATATAAACAACGGCAAGATCAGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGGACT                                                                                            <  SRR4302540.5096509/94‑1 (MQ=60)
    ATCGCGGTAAACTGCGTCGACATAGCCATCCCTAATATAAACAACGGCAAGATCAGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGGACT                                                                                            <  SRR4302540.5730483/94‑1 (MQ=60)
       GCGGTAAACTGCGTCGACATAGCCATCCCTAATATAAACAACGGCAAGATCAGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGGACTGAG                                                                                         <  SRR4302540.88475/94‑1 (MQ=60)
       GCGGTAAACTGCGTCGACATAGCCATCCCTAATATAAACAACGGCAAGATCAGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGAACTGAG                                                                                         <  SRR4302540.8188303/94‑1 (MQ=60)
       GCGGTAAACTGCGTCGACATAGCCATCCCTAATATAAACAACGGCAAGATCAGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGAACTGAG                                                                                         <  SRR4302540.481310/94‑1 (MQ=60)
        CGGTAAACTGCGTCGACATAGCCATCCCTAATATAAACAACGGCAAGATCAGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGC                                                                                        <  SRR4302540.6749773/94‑1 (MQ=60)
         GGTAAACTGCGTCGACATAGCCATCCCTAATATAAACAACGGCAAGATCAGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCG                                                                                       <  SRR4302540.7611409/94‑1 (MQ=60)
         GGTAAACTGCGTCGACATAGCCATCCCTAATATAAACAACGGCAAGATCAGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCG                                                                                       >  SRR4302540.221004/1‑94 (MQ=60)
         GGTAAACTGCGTCGACATAGCCATCCCTAATATAAACAACGGCAAGATCAGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCG                                                                                       >  SRR4302540.9039419/1‑94 (MQ=60)
         GGTAAACTGCGTCGACATAGCCATCCCTAATATAAACAACGGCAAGATCAGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCG                                                                                       <  SRR4302540.5010623/94‑1 (MQ=60)
         GGTAAACTGCGTCGACATAGCCATCCCTAATATAAACAACGGCAAGATCAGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCG                                                                                       <  SRR4302540.1119990/94‑1 (MQ=60)
          GTAAACTGCGTCGACATAGCCATCCCTAATATAAACAACGGCAAGATCAGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGA                                                                                      >  SRR4302540.9211434/1‑94 (MQ=60)
           TAAACTGCGTCGACATAGCCATCCCTAATATAAACAACGGCAAGATCAGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGAT                                                                                     <  SRR4302540.7100477/94‑1 (MQ=60)
           TAAACTGCGTCGACATAGCCATCCCTAATATAAACAACGGCAAGATCAGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGAT                                                                                     <  SRR4302540.4072168/94‑1 (MQ=60)
           TAAACTGCGTCGACATAGCCATCCCTAATATAAACAACGGCAAGATCAGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGAACTGAGCGAT                                                                                     <  SRR4302540.1888388/94‑1 (MQ=60)
            AAACTGCGTCGACATAGCCATCCCTAATATAAACAACGGCAAGATCAGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATC                                                                                    <  SRR4302540.3863313/94‑1 (MQ=60)
            AAACTGCGTCGACATAGCCATCCCTAATATAAACAACGGCAAGATCAGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATC                                                                                    >  SRR4302540.9161548/1‑94 (MQ=60)
            AAACTGCGTCGACATAGCCATCCCTAATATAAACAACGGCAAGATCAGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATC                                                                                    >  SRR4302540.1155177/1‑94 (MQ=60)
             AACTGCGTCGACATAGCCATCCCTAATATAAACAACGGCAAGATCAGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATCA                                                                                   <  SRR4302540.926641/94‑1 (MQ=60)
             AACTGCGTCGACATAGCCATCCCTAATATAAACAACGGCAAGATCAGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATCA                                                                                   <  SRR4302540.9973027/94‑1 (MQ=60)
               CTGCGTCGACATAGCCATCCCTAATATAAACAACGGCAAGATCAGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATT                                                                                 >  SRR4302540.2592083/1‑94 (MQ=60)
               CTGCGTCGACATAGCCATCCCTAATATAAACAACGGCAAGATCAGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATT                                                                                 >  SRR4302540.1891782/1‑94 (MQ=60)
               CTGCGTCGACATAGCCATCCCTAATATAAACAACGGCAAGATCAGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATT                                                                                 >  SRR4302540.5860320/1‑94 (MQ=60)
                TGCGTCGACATAGCCATCCCTAATATAAACAACGGCAAGATCAGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGAACTGAGCGATCATTA                                                                                >  SRR4302540.8531280/1‑94 (MQ=60)
                   GTCGACATAGCCATCCCTAATATAAACAACGGCAAGATCAGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCC                                                                             <  SRR4302540.2124859/94‑1 (MQ=60)
                     CGACATAGCCATCCCTAATATAAACAACGGCAAGATCAGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCA                                                                           >  SRR4302540.2174538/1‑94 (MQ=60)
                        CATAGCCATCCCTAATATAAACAACGGCAAGATCAGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATA                                                                        <  SRR4302540.1231564/94‑1 (MQ=60)
                         ATAGCCATCCCTAATATAAACAACGGTAAGATCAGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAA                                                                       >  SRR4302540.4389816/1‑94 (MQ=60)
                         ATAGCCATCCCTAATATAAACAACGGCAAGATCAGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAA                                                                       <  SRR4302540.4327995/94‑1 (MQ=60)
                         ATAGCCATCCCTAATATAAACAACGGCAAGATCAGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAA                                                                       >  SRR4302540.8376859/1‑94 (MQ=60)
                         ATAGCCATCCCTAATATAAACAACGGCAAGATCAGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAA                                                                       <  SRR4302540.4327994/94‑1 (MQ=60)
                         ATAGCCATCCCTAATATAAACAACGGCAAGATCAGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAA                                                                       >  SRR4302540.5629202/1‑94 (MQ=60)
                           AGCCATCCCTAATATAAACAACCGCAAGATCAGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATC                                                                     >  SRR4302540.1864781/1‑94 (MQ=60)
                              CATCCCTAATATAAACAACGGCAAGATCAGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACC                                                                  <  SRR4302540.5422009/94‑1 (MQ=60)
                              CATCCCTAATATAAACAACGGCAAGATCAGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACC                                                                  >  SRR4302540.4439674/1‑94 (MQ=60)
                               ATCCCTAATATAAACAACGGCAAGATCAGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCCCCG                                                                 >  SRR4302540.6063674/1‑94 (MQ=60)
                               ATCCCTAATATAAACAACGGCAAGATCAGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCG                                                                 <  SRR4302540.9462494/94‑1 (MQ=60)
                               ATCCCTAATATAAACAACGGCAAGATCAGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCG                                                                 <  SRR4302540.4539033/94‑1 (MQ=60)
                               ATCCCTAATATAAACAACGGCAAGATCAGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCG                                                                 >  SRR4302540.1131975/1‑94 (MQ=60)
                               ATCCCTAATATAAACAACGGCAAGATCAGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCG                                                                 >  SRR4302540.6430007/1‑94 (MQ=60)
                               ATCCCTAATATAAACAACGGCAAGATCAGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCG                                                                 >  SRR4302540.6705904/1‑94 (MQ=60)
                                TCCCTAATATAAACAACGGTAAGATCAGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGCTCATTAGCCCAATAATCACCGT                                                                >  SRR4302540.7544276/1‑94 (MQ=60)
                                TCCCTAATATAAACAACGGCAAGATCAGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGT                                                                >  SRR4302540.5314712/1‑94 (MQ=60)
                                TCCCTAATATAAACAACGGCAAGATCAGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGT                                                                >  SRR4302540.6824443/1‑94 (MQ=60)
                                TCCCTAATATAAACAACGGCAAGATCAGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGT                                                                <  SRR4302540.5461593/94‑1 (MQ=60)
                                 CCCTAATATAAACAACGGCAAGATCAGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTG                                                               <  SRR4302540.7617213/94‑1 (MQ=60)
                                 CCCTAATATAAACAACGGCAAGATCAGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTG                                                               <  SRR4302540.8683141/94‑1 (MQ=60)
                                 CCCTAATATAAACAACGGCAAGATCAGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTG                                                               <  SRR4302540.9314648/94‑1 (MQ=60)
                                 CCCTAATATAAACAACGGCAAGATCAGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTG                                                               >  SRR4302540.4450172/1‑94 (MQ=60)
                                  CCTAATATAAACAACGGCAAGATCAGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGA                                                              <  SRR4302540.8195460/94‑1 (MQ=60)
                                  CCTAATATAAACAACGGCAAGATCAGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGA                                                              >  SRR4302540.5573167/1‑94 (MQ=60)
                                   CTAATATAAACAACGGCAAGATCAGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGAT                                                             <  SRR4302540.5562219/94‑1 (MQ=60)
                                   CTAATATAAACAACGGCAAGATCAGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGAT                                                             <  SRR4302540.6893052/94‑1 (MQ=60)
                                   CTAATATAAACAACGGCAAGATCAGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGAT                                                             >  SRR4302540.3783418/1‑94 (MQ=60)
                                   CTAATATAAACAACGGCAAGATCAGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGAT                                                             >  SRR4302540.4998399/1‑94 (MQ=60)
                                   CTAATACAAACAACGGCAAGATCAGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGAT                                                             <  SRR4302540.3733884/94‑1 (MQ=60)
                                    TAATATAAACAACGGCAAGATCAGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATC                                                            <  SRR4302540.4172840/94‑1 (MQ=60)
                                    TAATATAAACAACGGCAAGATCAGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATC                                                            >  SRR4302540.7949888/1‑94 (MQ=60)
                                    TAATATAAACAACGGCAAGATCAGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATC                                                            <  SRR4302540.8160355/94‑1 (MQ=60)
                                     AATATAAACAACGGCAAGATCAGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCC                                                           >  SRR4302540.7777606/1‑94 (MQ=60)
                                     AATATAAACAACGGCAAGATCAGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCC                                                           >  SRR4302540.8016197/1‑94 (MQ=60)
                                      ATATAAACAACGGCAAGATCAGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCCC                                                          >  SRR4302540.5957049/1‑94 (MQ=60)
                                      ATATAAACAACGGCAAGATCAGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCCC                                                          >  SRR4302540.3121079/1‑94 (MQ=60)
                                      ATATAAACAACGGCAAGATCAGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCCC                                                          >  SRR4302540.6949317/1‑94 (MQ=60)
                                       TATAAACAACGGTAAGATCAGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCC                                                         >  SRR4302540.2124530/1‑94 (MQ=60)
                                       TATAAACAACGGCAAGATCAGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCC                                                         >  SRR4302540.8040015/1‑94 (MQ=60)
                                        ATAAACAACGGCAAGATCAGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCA                                                        >  SRR4302540.9556832/1‑94 (MQ=60)
                                         TAAACAACGGCAAGATCAGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCAC                                                       <  SRR4302540.6686541/94‑1 (MQ=60)
                                         TAAACAACGGCAAGATCAGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCAC                                                       <  SRR4302540.6508550/94‑1 (MQ=60)
                                           AAAAATGGCAAGATCAGCATCCATATAGACATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCACTA                                                     <  SRR4302540.5921430/94‑1 (MQ=60)
                                            ACAACGGCAAGATCAGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCACTAA                                                    >  SRR4302540.5160025/1‑94 (MQ=60)
                                             CAACGGCAAGATCAGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCACTAAC                                                   <  SRR4302540.2672970/94‑1 (MQ=60)
                                             CAACGGCAAGATCAGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCACTAAC                                                   <  SRR4302540.4066136/94‑1 (MQ=60)
                                             CAACGGCAAGATCAGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCACTAAC                                                   >  SRR4302540.4702523/1‑94 (MQ=60)
                                             CAACGGCAAGATCAGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCACTAAC                                                   >  SRR4302540.1543056/1‑94 (MQ=60)
                                             CAACGGCAAGATCAGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCACTAAC                                                   <  SRR4302540.4467240/94‑1 (MQ=60)
                                             CAACGGCAAGATCAGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCACTAAC                                                   <  SRR4302540.2672971/94‑1 (MQ=60)
                                             CAACGGCAAGATCAGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCACTAAC                                                   <  SRR4302540.9866639/94‑1 (MQ=60)
                                              AACGGCAAGATCAGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCACTAACG                                                  >  SRR4302540.7939836/1‑94 (MQ=60)
                                              AACGGCAAGATCAGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGAACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCACTAACG                                                  <  SRR4302540.8935833/94‑1 (MQ=60)
                                                CGGCAAGATCAGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCACTAACGTA                                                <  SRR4302540.3918765/94‑1 (MQ=60)
                                                CGGCAAGATCAGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCACTAACGTA                                                <  SRR4302540.3445284/94‑1 (MQ=60)
                                                CGGCAAGATCAGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGAACTGCGCGATCATTAGCCCAATAATCACCAAAATGCCCACTAACGTA                                                >  SRR4302540.5811346/1‑94 (MQ=60)
                                                 GGCAAGATCAGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCACTAACGTAT                                               <  SRR4302540.7246340/94‑1 (MQ=60)
                                                 GGCAAGATCAGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCACTAACGTAT                                               >  SRR4302540.9349287/1‑94 (MQ=60)
                                                 GGCAAGATCAGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCACTAACGTAT                                               <  SRR4302540.2181076/94‑1 (MQ=60)
                                                 GGCAAGATCAGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCACTAACGTAT                                               <  SRR4302540.9379996/94‑1 (MQ=60)
                                                 GGCAAGATCAGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCACTAACGTAT                                               <  SRR4302540.191966/94‑1 (MQ=60)
                                                  GCAAGATCAGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCACTAACGTATG                                              <  SRR4302540.4104004/94‑1 (MQ=60)
                                                  GCAAGATCAGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCACTAACGTATG                                              <  SRR4302540.4104005/94‑1 (MQ=60)
                                                  GCAAGATCAGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCACTAACGTATG                                              <  SRR4302540.3779720/94‑1 (MQ=60)
                                                  GCAAGATCAGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCACTAACGTATG                                              <  SRR4302540.6019766/94‑1 (MQ=60)
                                                   CAAGATCAGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCACTAACGTATGG                                             <  SRR4302540.4127883/94‑1 (MQ=60)
                                                      GATCAGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCACTAACGTATGGCGA                                          <  SRR4302540.1638394/94‑1 (MQ=60)
                                                       ATCAGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCCTCACTAACGTATGGCGAT                                         >  SRR4302540.9082913/1‑94 (MQ=60)
                                                       ATCAGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCACTAACGTATGGCGAT                                         <  SRR4302540.8762667/94‑1 (MQ=60)
                                                       ATCAGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCACTAACGTATGGCGAT                                         <  SRR4302540.5860999/94‑1 (MQ=60)
                                                        TCAGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCACTAACGTATGGCGATA                                        <  SRR4302540.2798808/94‑1 (MQ=60)
                                                        TCAGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCACTAACGTATGGCGATA                                        <  SRR4302540.2811822/94‑1 (MQ=60)
                                                        TCAGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCACTAACGTATGGCGATA                                        <  SRR4302540.3020353/94‑1 (MQ=60)
                                                        ACAGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGACCCCCACTAACGTATGGCGATA                                        <  SRR4302540.2563381/94‑1 (MQ=60)
                                                         CAGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCACTACCGTATGGCGATAG                                       >  SRR4302540.1586927/1‑94 (MQ=60)
                                                         CAGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCACTAACGTATGGCGATAG                                       >  SRR4302540.6186890/1‑94 (MQ=60)
                                                         CAGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCACTAACGTATGGCGATAG                                       <  SRR4302540.6581575/94‑1 (MQ=60)
                                                         CAGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCACTAACGTATGGCGATAG                                       <  SRR4302540.4505883/94‑1 (MQ=60)
                                                          AGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCACTAACGTATGGCGATAGC                                      >  SRR4302540.293566/1‑94 (MQ=60)
                                                          AGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCACTAACGTATGGCGATAGC                                      <  SRR4302540.10032320/94‑1 (MQ=60)
                                                          AGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCACTAACGTATGGCGATAGC                                      <  SRR4302540.1337238/94‑1 (MQ=60)
                                                           GCATCCATATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCACTAACGTATGGCGATAGCC                                     >  SRR4302540.6107529/1‑94 (MQ=60)
                                                           GCATCCATATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCACTAACGTATGGCGATAGCC                                     >  SRR4302540.510916/1‑94 (MQ=60)
                                                             ATCCATATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCACTAACGTATGGCGATAGCCCA                                   >  SRR4302540.529898/1‑94 (MQ=60)
                                                             ATCCATATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCACTAACGTATGGCGATAGCCCA                                   >  SRR4302540.1953498/1‑94 (MQ=60)
                                                             ATCCATATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCACTAACGTATGGCGATAGCCCA                                   >  SRR4302540.8311152/1‑94 (MQ=60)
                                                             ATCCATATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCACTAACGTATGGCGATAGCCCA                                   <  SRR4302540.4974356/94‑1 (MQ=60)
                                                             ATCCATATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCACTAACGTATCGCGATCGCCAA                                   >  SRR4302540.8311151/1‑94 (MQ=60)
                                                              TCCATATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCACTAACGTATGGCGATAGCCCAG                                  <  SRR4302540.5778719/94‑1 (MQ=60)
                                                              TCCATATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCACTAACGTATGGCGATAGCCCAG                                  >  SRR4302540.614252/1‑94 (MQ=60)
                                                              TCCATATAGCCATTGCTGGTGATTGCAAAGAGAACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCACTAACGTATGGCGATAGCCCAG                                  <  SRR4302540.7071800/94‑1 (MQ=60)
                                                               CCATATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCACTAACGTATGGCGATAGCCCAGA                                 >  SRR4302540.9414913/1‑94 (MQ=60)
                                                               CCATATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCACTAACGTATGGCGATAGCCCAGA                                 <  SRR4302540.6624644/94‑1 (MQ=60)
                                                               CCATATAGCCATTGCTGATGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCACTAACGTATGGCGATAGCCCAGA                                 <  SRR4302540.6624645/94‑1 (MQ=60)
                                                                CATATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCACTAACGTATGGCGATAGCCCAGAC                                >  SRR4302540.1810367/1‑94 (MQ=60)
                                                                CATATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCACTAACGTATGGCGATAGCCCAGAC                                <  SRR4302540.3606267/94‑1 (MQ=60)
                                                                 ATATAGCCATTGCTGGTGATTGCAAAGAGGACTGGGCGATCATTAGCCCAATAATCACCGTGATCCCCACTAACGTATGGCGATAGCCCAGACG                               >  SRR4302540.3447109/1‑94 (MQ=60)
                                                                 ATATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCACTAACGTATGGCGATAGCCCAGACG                               >  SRR4302540.4927482/1‑94 (MQ=60)
                                                                 ATATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCACTAACGTATGGCGATAGCCCAGACG                               >  SRR4302540.5683530/1‑94 (MQ=60)
                                                                 ATATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCACTAACGTATGGCGATAGCCCAGACG                               <  SRR4302540.4269285/94‑1 (MQ=60)
                                                                 ATATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCACTAACGTATGGCGATAGCCCAGACG                               >  SRR4302540.10080746/1‑94 (MQ=60)
                                                                 ATATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCACTAACGTATGGCGATAGCCCAGACG                               >  SRR4302540.5740516/1‑94 (MQ=60)
                                                                 ATATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCACTAACGTATGGCGATAGCCCAGACG                               >  SRR4302540.4597175/1‑94 (MQ=60)
                                                                  TATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCACTAACGTATGGCGATAGCCCAGACGA                              >  SRR4302540.6456246/1‑94 (MQ=60)
                                                                   ATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCACTAACGTATGGCGATAGCCCAGACGAC                             >  SRR4302540.7402993/1‑94 (MQ=60)
                                                                   ATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCACTAACGTATGGCGATAGCCCAGACGAC                             <  SRR4302540.8464399/94‑1 (MQ=60)
                                                                   ATAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCACTAACGTATGGCGATAGCCCAGACGAC                             >  SRR4302540.7232014/1‑94 (MQ=60)
                                                                    TAGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCACTAACGTATGGCGATAGCCCAGACGACG                            <  SRR4302540.2851868/94‑1 (MQ=60)
                                                                     AGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCACTAACGTATGGCGATAGCCCAGACGACGT                           >  SRR4302540.4711063/1‑94 (MQ=60)
                                                                     AGCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCACTAACGTATGGCGATAGCCCAGACGACGT                           >  SRR4302540.5322433/1‑94 (MQ=60)
                                                                      GCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCACTAACGTATGGCGATAGCCCAGACGACGTA                          <  SRR4302540.9524025/94‑1 (MQ=60)
                                                                      GCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCACTAACGTATGGCGATAGCCCAGACGACGTA                          >  SRR4302540.5855266/1‑94 (MQ=60)
                                                                      GCCATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCACTAACGTATGGCGATAGCCCAGACGACGTA                          <  SRR4302540.471528/94‑1 (MQ=60)
                                                                       CCATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCACTAACGTATGGCGATAGCCCAGACGACGTAA                         <  SRR4302540.6013876/94‑1 (MQ=60)
                                                                        CATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCACTAACGTATGGCGATAGCCCAGACGACGTAAG                        <  SRR4302540.2371228/94‑1 (MQ=60)
                                                                        CATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCACTAACGTATGGCGATAGCCCAGACGACGTAAG                        >  SRR4302540.3284598/1‑94 (MQ=60)
                                                                        CATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCACTAACGTATGGCGATAGCCCAGACGACGTAAG                        >  SRR4302540.8889798/1‑94 (MQ=60)
                                                                        CATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCACTAACGTATGGCGATAGCCCAGACGACGTAAG                        <  SRR4302540.347467/94‑1 (MQ=60)
                                                                         ATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCACTAACGTATGGCGATAGCCCAGACGACGTAAGA                       <  SRR4302540.1738576/94‑1 (MQ=60)
                                                                         ATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCACTAACGTATGGCGATAGCCCAGACGACGTAAGA                       >  SRR4302540.8667735/1‑94 (MQ=60)
                                                                         ATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCACTAACGTATGGCGATAGCCCAGACGACGTAAGA                       >  SRR4302540.5412416/1‑94 (MQ=60)
                                                                         ATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCACTAACGTATGGCGATAGCCCAGACGACGTAAGA                       >  SRR4302540.4870406/1‑94 (MQ=60)
                                                                         ATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCACTAACGTATGGCGATAGCCCAGACGACGTAAGA                       <  SRR4302540.1514481/94‑1 (MQ=60)
                                                                         ATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCACTAACGTATGGCGATAGCCCAGACGACGTAAGA                       >  SRR4302540.6998540/1‑94 (MQ=60)
                                                                         ATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCACTAACGTATGGCGATAGCCCAGACGACGTAAGA                       >  SRR4302540.7744540/1‑94 (MQ=60)
                                                                         ATTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCACTAACGTATGGCGATAGCCCAGACGACGTAAGA                       >  SRR4302540.3026581/1‑94 (MQ=60)
                                                                          TTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCACTAACGTATGGCGATAGCCCAGACGACGTAAGAC                      >  SRR4302540.9103866/1‑94 (MQ=60)
                                                                          TTGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCACTAACGTATGGCGATAGCCCAGACGACGTAAGAC                      >  SRR4302540.8792645/1‑94 (MQ=60)
                                                                           TGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCACTAACGTATGGCGATAGCCCAGACGACGTAAGACT                     >  SRR4302540.2523309/1‑94 (MQ=60)
                                                                           TGCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCACTAACGTATGGCGATAGCCCAGACGACGTAAGACT                     <  SRR4302540.283974/94‑1 (MQ=60)
                                                                            GCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCACTAACGTATGGCGATAGCCCAGACGACGTAAGACTT                    <  SRR4302540.7306890/94‑1 (MQ=60)
                                                                            GCTGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCACTAACGTATGGCGATAGCCCAGACGACGTAAGACTT                    <  SRR4302540.7715046/94‑1 (MQ=60)
                                                                              TGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCACTAACGTATGGCGATAGCCCAGACGACGTAAGACTTGG                  <  SRR4302540.7476057/94‑1 (MQ=60)
                                                                              TGGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCACTAACGTATGGCGATAGCCCAGACGACGTAAGACTTGG                  >  SRR4302540.7284888/1‑94 (MQ=60)
                                                                               GGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCACTAACGTATGGCGATAGCCCAGACGACGTAAGACTTGGG                 >  SRR4302540.5278259/1‑94 (MQ=60)
                                                                               GGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCACTAACGTATGGCGATAGCCCAGACGACGTAAGACTTGGG                 <  SRR4302540.7194244/94‑1 (MQ=60)
                                                                               GGTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCACTAACGTATGGCGATAGCCCAGACGACGTAAGACTTGGG                 >  SRR4302540.8652291/1‑94 (MQ=60)
                                                                                GTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCACTAACGTATGGCGATAGCCCAGACGACGTAAGACTTGGGT                <  SRR4302540.4599156/94‑1 (MQ=60)
                                                                                GTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCACTAACGTATGGCGATAGCCCAGACGACGTAAGACTTGGGT                >  SRR4302540.8934931/1‑94 (MQ=60)
                                                                                GTGATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCACTAACGTATGGCGATAGCCCAGACGACGTAAGACTTGGGT                <  SRR4302540.2705084/94‑1 (MQ=60)
                                                                                  GATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCACTAACGTATGGCGATAGCCCAGACGACGTAAGACTTGGGTAA              <  SRR4302540.6913883/94‑1 (MQ=60)
                                                                                   ATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCACTAACGTATGGCGATAGCCCAGACGACGTAAGACTTGGGTAAC             >  SRR4302540.9586907/1‑94 (MQ=60)
                                                                                   ATTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCACTAACGTATGGCGATAGCCCAGACGACGTAAGACTTGGGCAAC             >  SRR4302540.5314398/1‑94 (MQ=60)
                                                                                    TTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCACTAACGTATGGCGATAGCCCAGACGACGTAAGACTTGGGTAACC            <  SRR4302540.4806815/94‑1 (MQ=60)
                                                                                    TTGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCACTAACGTATGGCGATAGCCCAGACGACGTAAGACTTGGGTAACC            >  SRR4302540.8410092/1‑94 (MQ=60)
                                                                                     TGCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGAGCCCCACTAACGTATGGCGATAGCCCAGACGACGTAAGACTTGGGTAACCA           >  SRR4302540.4012649/1‑94 (MQ=60)
                                                                                      GCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCACTAACGTATGGCGATAGCCCAGACGACGTAAGACTTGGGTAACCAT          <  SRR4302540.3128709/94‑1 (MQ=60)
                                                                                      GCAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCACTAACGTATGGCGATAGCCCAGACGACGTAAGACTTGGGTAACCAT          >  SRR4302540.3340824/1‑94 (MQ=60)
                                                                                       CAAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCACTAACGTATGGCGATAGCCCAGACGACGTAAGACTTGGGTAACCATC         <  SRR4302540.3775864/94‑1 (MQ=60)
                                                                                        AAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCACTAACGTATGGCGATAGCCCAGACGACGTAAGACTTGGGTAACCATCG        >  SRR4302540.9312388/1‑94 (MQ=60)
                                                                                        AAAGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCACTAACGTATGGCGATAGCCCAGACGACGTAAGACTTGGGTAACCATCG        >  SRR4302540.9071514/1‑94 (MQ=60)
                                                                                        AAAGAGAACTGAGCGATCATTATCCCAATAATCACCGTGATCCCCACTAACGTATGGCGATAGCCCAGACGACGTAAGACTTGGGTAACCATCG        >  SRR4302540.1781253/1‑94 (MQ=60)
                                                                                          AGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCACTAACGTATGGCGATAGCCCAGACGACGTAAGACTTGGGTAACCATCGAT      >  SRR4302540.1387564/1‑94 (MQ=60)
                                                                                          AGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCACTAACGTATGGCGATAGCCCAGACGACGTAAGACTTGGGTAACCATCGAT      <  SRR4302540.4394272/94‑1 (MQ=60)
                                                                                          AGAGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCACTAACGTATGGCGATAGCCCAGACGACGTAAGACTTGGGTAACCATCGAT      <  SRR4302540.9932724/94‑1 (MQ=60)
                                                                                            AGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCACTAACGTATGGCGATAGCCCAGACGACGTAAGACTTGGGTAACCATCGATTT    <  SRR4302540.8500299/94‑1 (MQ=60)
                                                                                            AGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCACTAACGTATGGCGATAGCCCAGACGACGTAAGACTTGGGTAACCATCGATTT    <  SRR4302540.6668021/94‑1 (MQ=60)
                                                                                            AGGACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCACTAACGTATGGCGATAGCCCAGACGACGTAAGACTTGGGTAACCATCGATTT    >  SRR4302540.3348483/1‑94 (MQ=60)
                                                                                              GACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCACTAACGTATGGCGATAGCCCAGACGACGTAAGACTTGGGTAACCATCGATTTTG  >  SRR4302540.6315649/1‑94 (MQ=60)
                                                                                              |                                                                                             
ATTCATCGCGGTAAACTGCGTCGACATAGCCATCCCTAATATAAACAACGGCAAGATCAGCATCCATATAGCCATTGCTGGTGATTGCAAAGAGAACTGAGCGATCATTAGCCCAATAATCACCGTGATCCCCACTAACGTATGGCGATAGCCCAGACGACGTAAGACTTGGGTAACCATCGATTTTG  >  NC_000913/3937111‑3937298

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑