Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	1548	369.5	20095359	96.9%	19472402	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,519,062	A→G	I176T (ATA→ACA)	yjhF ←	putative transport system permease

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,519,062	0	A	G	99.8%	1485.1 / ‑5.5	451	I176T (ATA→ACA)	yjhF	putative transport system permease
Reads supporting (aligned to +/- strand): ref base A (0/1); new base G (269/181); total (269/182)
Fisher's exact test for biased strand distribution p-value = 4.04e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.42e-01

Only 100 of 468 total aligned reads displayed.

TTAAAGGCGTCCGGAATAATGCGCTGGCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATATCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCGGCGGCAAAAAACCGTGTGCGACCAGCAAA  >  NC_000913/4518972‑4519151

 tAAAGGCGTCCGGAATAATGCGCTGGCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCa                                                                                        >  2:8101196/1‑93 (MQ=255)

 tAAAGGCGTCCGGAATAATGCGCTGGCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCa                                                                                        >  2:693653/1‑93 (MQ=255)

 tAAAGGCGTCCGGAATAATGCGCTGGCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCa                                                                                        <  1:6631704/93‑1 (MQ=255)

 tAAAGGCGTCCGGAATAATGCGCTGGCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCa                                                                                        >  1:5285717/1‑93 (MQ=255)

   aaGGCGTCCGGAATAATGCGCTGGCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGt                                                                                      >  2:1824046/1‑93 (MQ=255)

      gCGTCCGGAATAATGCGCTGGCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTAcc                                                                                   <  1:5132619/93‑1 (MQ=255)

        gTCCGGAATAATGCGCTGGCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCaa                                                                                 <  2:8663302/93‑1 (MQ=255)

         tCCGGAATAATGCGCTGGCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAAt                                                                                >  2:9835206/1‑93 (MQ=255)

            ggAATAATGCGCTGGCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCt                                                                             <  1:1183956/93‑1 (MQ=255)

            ggAATAATGCGCTGGCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCt                                                                             >  1:84174/1‑93 (MQ=255)

             gAATAATGCGCTGGCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTa                                                                            >  2:9333393/1‑93 (MQ=255)

             gAATAATGCGCTGGCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTa                                                                            >  2:4456243/1‑93 (MQ=255)

              aataatGCGCTGGCAGAATTTATTCAATACCGGGCCGTAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTAc                                                                           <  2:6098777/93‑1 (MQ=255)

              aataatGCGCTGGCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTAc                                                                           <  1:7981805/93‑1 (MQ=255)

              aataatGCGCTGGCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTAc                                                                           <  2:6267347/93‑1 (MQ=255)

               ataatGCGCTGGCAGAATTTATTCAATCCCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACa                                                                          <  1:1709350/93‑1 (MQ=255)

               ataatGCGCTGGCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACa                                                                          >  1:9439966/1‑93 (MQ=255)

               ataatGCGCTGGCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACa                                                                          >  2:4167771/1‑93 (MQ=255)

               ataatGCGCTGGCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACa                                                                          >  1:2288857/1‑93 (MQ=255)

               ataatGCGCTGGCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACa                                                                          <  1:2501712/93‑1 (MQ=255)

                aaatGCGCTGGCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACAt                                                                         <  2:2776104/92‑1 (MQ=255)

                   tGCGCTGGCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAg                                                                      <  2:7352405/93‑1 (MQ=255)

                     cgcTGGCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAgcg                                                                    >  2:1079872/1‑93 (MQ=255)

                      gcTGGCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAgcgc                                                                   >  1:275215/1‑93 (MQ=255)

                      gcTGGCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAgcgc                                                                   >  2:7199721/1‑93 (MQ=255)

                      gcTGGCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAgcgc                                                                   >  2:7906601/1‑93 (MQ=255)

                       cTGGCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAgcgca                                                                  >  1:8491318/1‑92 (MQ=255)

                        tGGCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCa                                                                 >  2:1255496/1‑93 (MQ=255)

                         ggCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCat                                                                <  1:4666218/93‑1 (MQ=255)

                          gCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCata                                                               <  1:4583612/93‑1 (MQ=255)

                          gCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCata                                                               >  2:7638050/1‑93 (MQ=255)

                          gCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGGTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCata                                                               <  1:6220837/93‑1 (MQ=255)

                           cAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCatat                                                              >  1:7060871/1‑93 (MQ=255)

                           cAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCatat                                                              <  2:4958198/93‑1 (MQ=255)

                           cAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCatat                                                              >  2:7780387/1‑93 (MQ=255)

                             gAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTc                                                            <  1:6440327/93‑1 (MQ=255)

                             gAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATATCAGTACCAATCCTACATCAGCGCCATATTc                                                            <  2:8313186/93‑1 (MQ=255)

                              aaTTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTcc                                                           >  2:223277/1‑93 (MQ=255)

                              aaTTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTcc                                                           <  1:8657535/93‑1 (MQ=255)

                                 ttATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTg                                                        <  1:8864056/93‑1 (MQ=255)

                                 ttATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTg                                                        >  2:8474394/1‑93 (MQ=255)

                                  tATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTgg                                                       <  1:7633439/93‑1 (MQ=255)

                                    ttCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAAACCTACATCAGCGCCATATTCCCTGGCg                                                     <  2:4628326/93‑1 (MQ=255)

                                      cAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGAt                                                   <  1:5833152/93‑1 (MQ=255)

                                        aTACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATaa                                                 >  2:6186727/1‑93 (MQ=255)

                                         tACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAAc                                                >  1:3919560/1‑93 (MQ=255)

                                         tACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAAc                                                >  2:8887355/1‑93 (MQ=255)

                                         tACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAAc                                                <  2:8085650/93‑1 (MQ=255)

                                         aaCCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAAc                                                <  1:8091322/92‑1 (MQ=255)

                                          aCCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACa                                               <  1:1375899/93‑1 (MQ=255)

                                           ccGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAg                                              >  1:3288388/1‑93 (MQ=255)

                                           ccGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAg                                              <  2:1542025/93‑1 (MQ=255)

                                            cGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGt                                             <  2:342827/93‑1 (MQ=255)

                                            cGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGt                                             <  2:951033/93‑1 (MQ=255)

                                              ggCCGCAAAGAATAAAGGTTGGAATGGCGACAAGGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCg                                           <  1:2959161/93‑1 (MQ=255)

                                                ccGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCggg                                         <  2:5745019/93‑1 (MQ=255)

                                                 cGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGc                                        >  1:4870567/1‑93 (MQ=255)

                                                   cAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCg                                      >  2:5893707/1‑93 (MQ=255)

                                                   cAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCg                                      <  2:3050895/93‑1 (MQ=255)

                                                    aaaGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCgg                                     >  2:5150467/1‑93 (MQ=255)

                                                      aGAATAAAGGTTGGAATGCCGACAATGATACCGGATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCgggg                                   <  1:8222634/93‑1 (MQ=255)

                                                       gAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCggggg                                  >  2:3778557/1‑92 (MQ=255)

                                                         aTAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTgc                                >  1:4247295/1‑93 (MQ=255)

                                                         aTAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTgc                                <  1:5915784/93‑1 (MQ=255)

                                                         aTAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGGgc                                >  1:2068/1‑93 (MQ=255)

                                                          tAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTgcg                               >  1:4057118/1‑93 (MQ=255)

                                                          tAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTgcg                               >  2:1022708/1‑93 (MQ=255)

                                                            aaGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTgcggc                             <  2:2692951/93‑1 (MQ=255)

                                                            aaGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCATGGCGATAACAGTCGGGCCGGGGGgcgtc                             >  1:7471620/1‑91 (MQ=255)

                                                            aaGGTTGGAATGCCGACAATGATACCGTATGCCAGCACCAACCCTAAAGCAGCGCCATATTACTCTCCGATAAAAGCCGGGGCGGGGGggggc                             >  1:5148432/1‑93 (MQ=255)

                                                              ggTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGcggcgg                           >  2:6717951/1‑93 (MQ=255)

                                                               gTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCggcggc                          >  2:913598/1‑93 (MQ=255)

                                                                 tGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCGGCGGCaa                        >  1:10020017/1‑93 (MQ=255)

                                                                      tGCCGACAATGATACCGTATGTCAGTACCAATCGTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCGGCGGCaaaaagc                   <  2:7044259/93‑3 (MQ=255)

                                                                      tGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATCACCGTCGGGCCGGGGTGCGGCGGCACAacac                   >  1:7096356/1‑93 (MQ=255)

                                                                      tGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCGGCGGCAAAAAAc                   >  2:2115584/1‑93 (MQ=255)

                                                                      tGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCGGCGGCAAAAAAc                   >  2:7760150/1‑93 (MQ=255)

                                                                       gCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCGGCGGCAAAAAAcc                  >  1:6798649/1‑93 (MQ=255)

                                                                          gACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCGGCGGCAAAAAACCgtg               >  1:6116076/1‑93 (MQ=255)

                                                                          gACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCGGCGGCAAAAAACCgtg               >  1:1505008/1‑93 (MQ=255)

                                                                          gACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCGGCGGCAAAAAACCgtg               <  2:5408758/93‑1 (MQ=255)

                                                                          gACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGCGCGGCGGCAAGAAACCgtg               >  1:2246611/1‑93 (MQ=255)

                                                                           aCAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCGGCGGCAAAAAACCgtgt              <  2:3672497/93‑1 (MQ=255)

                                                                           aCAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCGGCGGCAAAAAACCgtgt              >  1:9101766/1‑93 (MQ=255)

                                                                            cAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCGGCGGCAAAAAACtgtgtg             <  1:6935762/93‑1 (MQ=255)

                                                                             aaTGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCGGCGGCAAAAAACCGTGTGc            >  1:371356/1‑93 (MQ=255)

                                                                             aaTGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCGGCGGCAAAAAACCGTGTGc            >  2:5657284/1‑93 (MQ=255)

                                                                               tGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCGGCGGCAAAAAACCGTGTGCGa          >  1:3138363/1‑93 (MQ=255)

                                                                               tGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCGGCGGCAAAAAACCGTGTGCGa          >  1:5751177/1‑93 (MQ=255)

                                                                               tGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCGGCGGCAAAAAACCGTGTGCGa          >  1:7813375/1‑93 (MQ=255)

                                                                               tGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCGGCGGCAAAAAACCGTGTGCGa          >  1:8522625/1‑93 (MQ=255)

                                                                                 aTACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCGGCGGCAAAAAACCGTGTGCGAcc        <  1:5514475/93‑1 (MQ=255)

                                                                                  tACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCGGCGGCAAAAAACCGTGTGCGACCa       >  2:2455209/1‑93 (MQ=255)

                                                                                  tACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCGGCGGCAAAAAACCGTGTGCGACCa       <  1:3848890/93‑1 (MQ=255)

                                                                                  tACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCGGCGGCAAAAAACCGTGTGCGACCa       >  2:1300532/1‑93 (MQ=255)

                                                                                   aCCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCGGCGGCAAAAAACCGTGTGCGACCAg      >  1:2450930/1‑93 (MQ=255)

                                                                                   aCCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCGGCGGCAAAAAACCGTGTGCGACCAg      >  2:4045846/1‑93 (MQ=255)

                                                                                      gTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCGGCGGCAAAAAACCGTGTGCGACCAGCaa   >  1:7330729/1‑93 (MQ=255)

                                                                                       tatgTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCGGCGGCAAAAAACCGTGTGCGACCAGCaaa  >  1:4172030/1‑93 (MQ=255)

                                                                                       tatgTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCGGCGGCAAAAAACCGTGTGCGACCAGCaaa  >  1:9896416/1‑93 (MQ=255)

TTAAAGGCGTCCGGAATAATGCGCTGGCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATATCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCGGCGGCAAAAAACCGTGTGCGACCAGCAAA  >  NC_000913/4518972‑4519151

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output Only 200 of 260 total aligned reads displayed.

TTTTTAAAGGCGTCCGGAATAATGCGCTGGCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATATCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCGGCGGCAAAAAACCGTGTGCGACCAGCAAACCAG  >  NC_000913/4518969‑4519155

 TTTTAAAGGCGTCCGGTATAATGCGCTGGCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGT                                                                                              <  SRR4302540.2636475/94‑1 (MQ=60)

  TTTAAAGGCGTCCGGAATAATGCGCTGGCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTC                                                                                             >  SRR4302540.9167874/1‑94 (MQ=60)

   TTAAAGGCGTCCGGAATAATGCGCTGGCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCA                                                                                            >  SRR4302540.5343472/1‑94 (MQ=60)

   TTAAAGGCGTCCGGAATAATGCGCTGGCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCA                                                                                            <  SRR4302540.5087449/94‑1 (MQ=60)

   TTAAAGGCGTCCGGAATAATGCGCTGGCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCA                                                                                            <  SRR4302540.3061690/94‑1 (MQ=60)

    TAAAGGCGTCCGGAATAATGCGCTGGCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAG                                                                                           <  SRR4302540.6705109/94‑1 (MQ=60)

     AAAGGCGTCCGGAATAATGCGCTGGCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGT                                                                                          <  SRR4302540.5955035/94‑1 (MQ=60)

     AAAGGCGTCCGGAATAATGCGCTGGCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGT                                                                                          <  SRR4302540.4430499/94‑1 (MQ=60)

     AAAGGCGTCCGGAATAATGCGCTGGCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGT                                                                                          >  SRR4302540.4947955/1‑94 (MQ=60)

      AAGGCGTCCGGAATAATGCGCTGGCAGAATTTATTCAATACCGGGCCGCAAAGCATAAAGGCTGGAATGCCGACAATGATACCGTATGTCAGTA                                                                                         >  SRR4302540.4559300/1‑94 (MQ=60)

      AAGGCGTCCGGAATAATGCGCTGGCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTA                                                                                         >  SRR4302540.6373335/1‑94 (MQ=60)

      AAGGCGTCCGGAATAATGCGCTGGCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTA                                                                                         <  SRR4302540.3216919/94‑1 (MQ=60)

       AGGCGTCCGGAATAATGCGCTGGCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTAC                                                                                        <  SRR4302540.6902804/94‑1 (MQ=60)

        GGCGTCCGGAATAATGCGCTGGCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACC                                                                                       >  SRR4302540.8588573/1‑94 (MQ=60)

         GCGTCCGGAATAATGCGCTGGCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCA                                                                                      >  SRR4302540.7912295/1‑94 (MQ=60)

         GCGTCCGGAATAATGCGCTGGCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCA                                                                                      <  SRR4302540.5188206/94‑1 (MQ=60)

           GTCCGGAATAATGCGCTGGCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAAT                                                                                    <  SRR4302540.3581301/94‑1 (MQ=60)

             CCGGAATAATGCGCTGGCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCC                                                                                  <  SRR4302540.846717/94‑1 (MQ=60)

              CGGAATAATGCGCTGGCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCT                                                                                 >  SRR4302540.1184097/1‑94 (MQ=60)

              CGGAATAATGCGCTGGCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCT                                                                                 <  SRR4302540.4001992/94‑1 (MQ=60)

              CGGAATAATGCGCTGGCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCT                                                                                 <  SRR4302540.8102631/94‑1 (MQ=60)

              CGGAATAATGCGCTGGCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCT                                                                                 >  SRR4302540.85060/1‑94 (MQ=60)

               GGAATAATGCGCTGGCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTA                                                                                >  SRR4302540.2520865/1‑94 (MQ=60)

               GGAATAATGCGCTGGCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTA                                                                                >  SRR4302540.4352252/1‑94 (MQ=60)

               GGAATAATGCGCTGGCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTA                                                                                <  SRR4302540.8152848/94‑1 (MQ=60)

               GGAATAATGCGCTGGCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTA                                                                                >  SRR4302540.6662743/1‑94 (MQ=60)

                GAATAATGCGCTGGCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTAC                                                                               >  SRR4302540.8247340/1‑94 (MQ=60)

                GAATAATGCGCTGGCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTAC                                                                               <  SRR4302540.7251632/94‑1 (MQ=60)

                 AATAATGCGCTGGCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACA                                                                              <  SRR4302540.6262894/94‑1 (MQ=60)

                 AATAATGCGCTGGCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACA                                                                              >  SRR4302540.9552067/1‑94 (MQ=60)

                 AATAATGCGCTGGCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACA                                                                              <  SRR4302540.8074765/94‑1 (MQ=60)

                 AATAATGCGCTGGCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACA                                                                              >  SRR4302540.2313478/1‑94 (MQ=60)

                  ATAATGCGCTGGCAGAATTTATTCAATCCCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACAT                                                                             <  SRR4302540.1727819/94‑1 (MQ=60)

                  ATAATGCGCTGGCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACAT                                                                             >  SRR4302540.2452479/1‑94 (MQ=60)

                  ATAATGCGCTGGCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACAT                                                                             <  SRR4302540.5249573/94‑1 (MQ=60)

                  ATAATGCGCTGGCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACAT                                                                             <  SRR4302540.8223800/94‑1 (MQ=60)

                  ATAATGCGCTGGCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGCACCAATCCTACAT                                                                             >  SRR4302540.1421239/1‑94 (MQ=60)

                   TAATGCGCTGGCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATC                                                                            <  SRR4302540.2299964/94‑1 (MQ=60)

                    TATGCTCTGGCAGAATTTATTCAATCCCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATCCCGTATGTCAGTACCAATCCTACATCA                                                                           <  SRR4302540.3221490/94‑1 (MQ=60)

                     ATGCGCTGGCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAG                                                                          <  SRR4302540.6790027/94‑1 (MQ=60)

                     ATGCGCTGGCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAG                                                                          >  SRR4302540.4991676/1‑94 (MQ=60)

                     ATGCGCTGGCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAG                                                                          <  SRR4302540.7073191/94‑1 (MQ=60)

                      TGCGCTGGCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGC                                                                         <  SRR4302540.326880/94‑1 (MQ=60)

                      TGCGCTGGCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAACCCTACATCAGC                                                                         >  SRR4302540.7522651/1‑94 (MQ=60)

                       GCGCTGGCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCG                                                                        >  SRR4302540.7157780/1‑94 (MQ=60)

                        CGCTGGCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGC                                                                       <  SRR4302540.4739449/94‑1 (MQ=60)

                        CGCTGGCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGC                                                                       >  SRR4302540.277924/1‑94 (MQ=60)

                         GCTGGCAGAATTTATTCAATACCGGGCTGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTAAGTCAGTACCAATCCTACATCAGCGCC                                                                      >  SRR4302540.9070223/1‑94 (MQ=60)

                         GCTGGCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCC                                                                      >  SRR4302540.8591244/1‑94 (MQ=60)

                         GCTGGCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCA                                                                      >  SRR4302540.8589980/1‑94 (MQ=60)

                          CTGGCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCA                                                                     >  SRR4302540.6028215/1‑94 (MQ=60)

                          CTGGCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCA                                                                     >  SRR4302540.3672769/1‑94 (MQ=60)

                          CTGGCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCA                                                                     <  SRR4302540.5506640/94‑1 (MQ=60)

                            GGCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATA                                                                   <  SRR4302540.4716168/94‑1 (MQ=60)

                             GCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATAT                                                                  <  SRR4302540.8366864/94‑1 (MQ=60)

                             GCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATAT                                                                  >  SRR4302540.7139399/1‑94 (MQ=60)

                             GCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATAT                                                                  >  SRR4302540.7139400/1‑94 (MQ=60)

                             GCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATAT                                                                  <  SRR4302540.4633006/94‑1 (MQ=60)

                             GCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGGTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATAT                                                                  <  SRR4302540.6290037/94‑1 (MQ=60)

                               AGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTC                                                                >  SRR4302540.7289883/1‑94 (MQ=60)

                               AGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTC                                                                <  SRR4302540.3761783/94‑1 (MQ=60)

                               AGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTC                                                                >  SRR4302540.7151839/1‑94 (MQ=60)

                                GAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCC                                                               >  SRR4302540.6105429/1‑94 (MQ=60)

                                GAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCC                                                               <  SRR4302540.6512009/94‑1 (MQ=60)

                                GAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCC                                                               >  SRR4302540.7662249/1‑94 (MQ=60)

                                 AATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCC                                                              >  SRR4302540.3930215/1‑94 (MQ=60)

                                 AATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCC                                                              <  SRR4302540.3649267/94‑1 (MQ=60)

                                 AATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCC                                                              <  SRR4302540.8758104/94‑1 (MQ=60)

                                 AATTTATTCAATACCGGACCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCACTCCTACATCAGCGCCATATTCCC                                                              <  SRR4302540.1761038/94‑1 (MQ=60)

                                  ATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCT                                                             >  SRR4302540.9822214/1‑94 (MQ=60)

                                  ATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCT                                                             >  SRR4302540.7052524/1‑94 (MQ=60)

                                    TTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGG                                                           >  SRR4302540.2882356/1‑94 (MQ=60)

                                    TTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGG                                                           <  SRR4302540.2887693/94‑1 (MQ=60)

                                    TTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGG                                                           <  SRR4302540.8966627/94‑1 (MQ=60)

                                     TATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGC                                                          >  SRR4302540.6664975/1‑94 (MQ=60)

                                     TATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGC                                                          >  SRR4302540.6793275/1‑94 (MQ=60)

                                     TATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGC                                                          <  SRR4302540.7719318/94‑1 (MQ=60)

                                      ATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCTATATTCCCTGGCG                                                         <  SRR4302540.6878492/94‑1 (MQ=60)

                                      ATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCG                                                         >  SRR4302540.7554902/1‑94 (MQ=60)

                                      ATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCG                                                         >  SRR4302540.3042726/1‑94 (MQ=60)

                                       TTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGA                                                        >  SRR4302540.8577094/1‑94 (MQ=60)

                                       TTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGA                                                        >  SRR4302540.8645099/1‑94 (MQ=60)

                                       TTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGA                                                        >  SRR4302540.8520407/1‑94 (MQ=60)

                                        TCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGAT                                                       <  SRR4302540.2851741/94‑1 (MQ=60)

                                         CAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATA                                                      <  SRR4302540.5897654/94‑1 (MQ=60)

                                           ATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAAC                                                    >  SRR4302540.1629731/1‑94 (MQ=60)

                                            TACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACA                                                   >  SRR4302540.6807125/1‑94 (MQ=60)

                                            AACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACA                                                   <  SRR4302540.8185238/94‑1 (MQ=60)

                                             ACCGGTCCGCAAAGAATAAAGTTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAG                                                  <  SRR4302540.2038485/94‑1 (MQ=60)

                                             ACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAG                                                  >  SRR4302540.3324360/1‑94 (MQ=60)

                                             ACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAG                                                  <  SRR4302540.1390502/94‑1 (MQ=60)

                                              CCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGT                                                 >  SRR4302540.3912435/1‑94 (MQ=60)

                                              CCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGT                                                 <  SRR4302540.23671/94‑1 (MQ=60)

                                              CCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGT                                                 <  SRR4302540.10085146/94‑1 (MQ=60)

                                              CCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGT                                                 <  SRR4302540.1637287/94‑1 (MQ=60)

                                               CGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTG                                                >  SRR4302540.8675905/1‑94 (MQ=60)

                                               CGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTC                                                <  SRR4302540.7686162/94‑1 (MQ=60)

                                               CGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTC                                                <  SRR4302540.6272703/94‑1 (MQ=60)

                                                GGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCG                                               >  SRR4302540.8912223/1‑94 (MQ=60)

                                                GGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCG                                               >  SRR4302540.7902577/1‑94 (MQ=60)

                                                GGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCG                                               >  SRR4302540.7902578/1‑94 (MQ=60)

                                                 GGCCGCAAAGAATAAAGGTTGGAATGGCGACAAGGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGG                                              <  SRR4302540.2991775/94‑1 (MQ=60)

                                                 GGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGG                                              <  SRR4302540.5742095/94‑1 (MQ=60)

                                                   CCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGC                                            >  SRR4302540.8618571/1‑94 (MQ=60)

                                                   CCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGC                                            >  SRR4302540.4922817/1‑94 (MQ=60)

                                                    CGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCC                                           <  SRR4302540.2172897/94‑1 (MQ=60)

                                                    CGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCC                                           <  SRR4302540.4104963/94‑1 (MQ=60)

                                                    CGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCC                                           >  SRR4302540.5816125/1‑94 (MQ=60)

                                                    CGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCC                                           >  SRR4302540.5816126/1‑94 (MQ=60)

                                                     GCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCG                                          >  SRR4302540.1766785/1‑94 (MQ=60)

                                                      CAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGG                                         >  SRR4302540.2615716/1‑94 (MQ=60)

                                                      CAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGG                                         >  SRR4302540.3948917/1‑94 (MQ=60)

                                                      CAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGG                                         >  SRR4302540.142058/1‑94 (MQ=60)

                                                      CAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGG                                         >  SRR4302540.5919159/1‑94 (MQ=60)

                                                       AAAGAATAAAGGTTGGAATGCCGACAATGATACCTTATGTCAGTTCCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGG                                        <  SRR4302540.7964510/94‑1 (MQ=60)

                                                         AGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGT                                      <  SRR4302540.8318218/94‑1 (MQ=60)

                                                         AGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTACCTGGCGATAACAGTCGGGCCGGGGT                                      <  SRR4302540.7361692/94‑1 (MQ=60)

                                                         AGAATAAAGGTTGGAATGCCGACAATGATACCGGATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGT                                      <  SRR4302540.8318217/94‑1 (MQ=60)

                                                          GAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTG                                     >  SRR4302540.9601367/1‑94 (MQ=60)

                                                          GAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTG                                     >  SRR4302540.5337507/1‑94 (MQ=60)

                                                          GAATAAAGGTTGGAATGCCGACAATGAGACCGCATGTCAGTACCAATTCTACACCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGAG                                     >  SRR4302540.5337509/1‑94 (MQ=60)

                                                           AATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGC                                    >  SRR4302540.4293503/1‑94 (MQ=60)

                                                           AATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGC                                    <  SRR4302540.4174233/94‑1 (MQ=60)

                                                           AATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGGGC                                    >  SRR4302540.2088/1‑94 (MQ=60)

                                                            ATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCG                                   >  SRR4302540.6042377/1‑94 (MQ=60)

                                                            ATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCG                                   <  SRR4302540.5981137/94‑1 (MQ=60)

                                                            ATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCG                                   >  SRR4302540.4100859/1‑94 (MQ=60)

                                                            ATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCG                                   >  SRR4302540.2206118/1‑94 (MQ=60)

                                                              AAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCGGC                                 >  SRR4302540.5204232/1‑94 (MQ=60)

                                                              AAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCGGC                                 <  SRR4302540.2521530/94‑1 (MQ=60)

                                                              AAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCATGGCGATAACAGTCGGGCCGGGGGGCGTC                                 >  SRR4302540.7554987/1‑94 (MQ=60)

                                                              AAAGGTTGGAATGCCGACAATGATACCGTATGCCAGCACCAACCCTAAAGCAGCGCCATATTactctccgataaaagccggggcgggggggggc                                 >  SRR4302540.5204233/1‑62 (MQ=28)

                                                               AAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCGGCG                                <  SRR4302540.405006/94‑1 (MQ=60)

                                                               AAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCGGCG                                >  SRR4302540.4700154/1‑94 (MQ=60)

                                                               AAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCGGCG                                >  SRR4302540.4700155/1‑94 (MQ=60)

                                                                AGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCGGCGG                               >  SRR4302540.6561474/1‑94 (MQ=60)

                                                                  GTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCGGCGGCA                             >  SRR4302540.8157709/1‑94 (MQ=60)

                                                                  GTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCGGCGGCA                             >  SRR4302540.4001511/1‑94 (MQ=60)

                                                                  GTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCGGCGGCA                             >  SRR4302540.8909653/1‑94 (MQ=60)

                                                                  GTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCGGCGGCA                             <  SRR4302540.46804/94‑1 (MQ=60)

                                                                   TTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCGGCGGCAA                            >  SRR4302540.10136635/1‑94 (MQ=60)

                                                                    TGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCGGCGGCAAA                           >  SRR4302540.7649501/1‑94 (MQ=60)

                                                                     GGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCGGCGGCAAAA                          <  SRR4302540.1064379/94‑1 (MQ=60)

                                                                        gccaaaaaattaatcCCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCGGCGGCAAAAAAC                       <  SRR4302540.5636685/79‑1 (MQ=60)

                                                                        ATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATCACCGTCGGGCCGGGGTGCGGCGGCACAACAC                       >  SRR4302540.7175328/1‑94 (MQ=60)

                                                                        ATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCGGCGGCAAAAAAC                       >  SRR4302540.1271240/1‑94 (MQ=60)

                                                                        ATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCGGCGGCAAAAAAC                       >  SRR4302540.1503292/1‑94 (MQ=60)

                                                                        ATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCGGCGGCAAAAAAC                       >  SRR4302540.6476785/1‑94 (MQ=60)

                                                                         TGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCGGCGGCAAAAAACC                      <  SRR4302540.6279355/94‑1 (MQ=60)

                                                                         TGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCGGCGGCAAAAAACC                      >  SRR4302540.4795977/1‑94 (MQ=60)

                                                                          GCCGACAATGACACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCGGCGGCAAAAAACCG                     <  SRR4302540.3827969/94‑1 (MQ=60)

                                                                           CCGACAATGATACCGTATGTCAGTACCCATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCGGCGGCAAAAAACCGT                    >  SRR4302540.9585426/1‑94 (MQ=60)

                                                                           CCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCGGCGGCAAAAAACCGT                    <  SRR4302540.5614352/94‑1 (MQ=60)

                                                                           CCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCGGCGGCAAAAAACCGG                    >  SRR4302540.2277618/1‑94 (MQ=60)

                                                                            CGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCGGCGGCAAAAAACCGTG                   >  SRR4302540.6184183/1‑94 (MQ=60)

                                                                            CGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCGGCGGCAAAAAACCGTG                   >  SRR4302540.1521610/1‑94 (MQ=60)

                                                                            CGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCGGCGGCAAAAAACCGTG                   >  SRR4302540.1263966/1‑94 (MQ=60)

                                                                            CGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGCGCGGCGGCAAGAAACCGTG                   >  SRR4302540.2270745/1‑94 (MQ=60)

                                                                             GACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCGGCGGCAAAAAACCGTGT                  <  SRR4302540.10073307/94‑1 (MQ=60)

                                                                             GACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCGGCGGCAAAAAACCGTGT                  <  SRR4302540.2178862/94‑1 (MQ=60)

                                                                             GACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCGGCGGCAAAAAACCGTGT                  >  SRR4302540.9211136/1‑94 (MQ=60)

                                                                               CAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCGGCGGCAAAAAACCGTGTGC                >  SRR4302540.7073299/1‑94 (MQ=60)

                                                                                AATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCGGCGGCAAAAAACCGTGTGCG               >  SRR4302540.5199815/1‑94 (MQ=60)

                                                                                AATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCGGCGGCAAAAAACCGTGTGCG               >  SRR4302540.8688766/1‑94 (MQ=60)

                                                                                AATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCGGCGGCAAAAAACCGTGTGCG               >  SRR4302540.3161874/1‑94 (MQ=60)

                                                                                AATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCGGCGGCAAAAAACCGTGTGCG               <  SRR4302540.7455713/94‑1 (MQ=60)

                                                                                AATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCGGCGGCAAAAAACCGTGTGCG               <  SRR4302540.5891424/94‑1 (MQ=60)

                                                                                 ATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCGGCGGCAAAAAACCGTGTGCGA              >  SRR4302540.1233887/1‑94 (MQ=60)

                                                                                 ATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCGGCGGCAAAAAACCGTGTGCGA              >  SRR4302540.5814654/1‑94 (MQ=60)

                                                                                 ATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCGGCGGCAAAAAACCGTGTGCGA              >  SRR4302540.8621664/1‑94 (MQ=60)

                                                                                 ATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCGGCGGCAAAAAACCGTGTGCGA              >  SRR4302540.2542875/1‑94 (MQ=60)

                                                                                 ATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCGGCGGCAAAAAACCGTGTGCGA              >  SRR4302540.7904680/1‑94 (MQ=60)

                                                                                    ATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCGGCGGCAAAAAACCGTGTGCGACCA           <  SRR4302540.5575213/94‑1 (MQ=60)

                                                                                     TACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCGGCGGCAAAAAACCGTGTGCGACCAG          >  SRR4302540.9491710/1‑94 (MQ=60)

                                                                                     TACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCGGCGGCAAAAAACCGTGTGCGACCAG          >  SRR4302540.2477322/1‑94 (MQ=60)

                                                                                     TACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCGGCGGCAAAAAACCGTGTGCGACCAG          <  SRR4302540.3890745/94‑1 (MQ=60)

                                                                                      ACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCGGCGGCAAAAAACCGTGTGCGACCAGC         >  SRR4302540.3770780/1‑94 (MQ=60)

                                                                                      ACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCGGCGGCAAAAAACCGTGTGCGACCAGC         >  SRR4302540.7965369/1‑94 (MQ=60)

                                                                                       CCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCGGCGGCAAAAAACCGTGTGCGACCAGCA        >  SRR4302540.6889208/1‑94 (MQ=60)

                                                                                       CCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCGGCGGCAAAAAACCGTGTGCGACCAGCA        >  SRR4302540.2415914/1‑94 (MQ=60)

                                                                                       CCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCGGCGGCAAAAAACCGTGTGCGACCAGCA        <  SRR4302540.2512431/94‑1 (MQ=60)

                                                                                        CGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCGGCGGCAAAAAACCGTGTGCGACCAGCAA       >  SRR4302540.7412569/1‑94 (MQ=60)

                                                                                        CGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCGGCGGCAAAAAACCGTGTGCGACCAGCAA       >  SRR4302540.4254941/1‑94 (MQ=60)

                                                                                         GTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCGGCGGCAAAACACCGTGTGCGAACAGCAAC      >  SRR4302540.5431587/1‑94 (MQ=60)

                                                                                         GTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCGGCGGCAAAAAACCGTGTGCGACCAGCAAA      >  SRR4302540.8775309/1‑94 (MQ=60)

                                                                                         GTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCGGCGGCAAAAAACCGTGTGCGACCAGCAAA      >  SRR4302540.4217291/1‑94 (MQ=60)

                                                                                         GTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCGGCGGCAAAAAACCGTGTGCGACCAGCAAA      >  SRR4302540.4217292/1‑94 (MQ=60)

                                                                                         GTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCGGCGGCAAAAAACCGTGTGCGACCAGCAAA      >  SRR4302540.9111997/1‑94 (MQ=60)

                                                                                         GTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCGGCGGCAAAAAACCGTGTGCGACCAGCAAA      >  SRR4302540.10011990/1‑94 (MQ=60)

                                                                                         GTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCGGCGGCAAAAAACCGTGTGCGACCAGCAAA      >  SRR4302540.9402110/1‑94 (MQ=60)

                                                                                          TATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCGGCGGCAAAAAACCGTGTGCGACCAGCAAAC     <  SRR4302540.4239684/94‑1 (MQ=60)

                                                                                           ATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCGGCGGCAAAAAACCGTGTGCGACCAGCAAACC    >  SRR4302540.2952847/1‑94 (MQ=60)

                                                                                           ATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCGGCGGCAAAAAACCGTGTGCGACCAGCAAACC    <  SRR4302540.1029440/94‑1 (MQ=60)

                                                                                            TGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCGGCGGCAAAAAACCGTGTGCGACCAGCAAACCA   >  SRR4302540.7004754/1‑94 (MQ=60)

                                                                                            TGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCGGCGGCAAAAAACCGTGTGCGACCAGCAAACCA   <  SRR4302540.2431417/94‑1 (MQ=60)

                                                                                            TGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCGGCGGCAAAAAACCGTGTGCGACCAGCAAACCA   >  SRR4302540.5665076/1‑94 (MQ=60)

                                                                                            TGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCGGCGGCAAAAAACCGTGTGCGACCAGCAAACCA   <  SRR4302540.8923631/94‑1 (MQ=60)

                                                                                            TGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCGGCGGCAAAAAACCGTGTGCGACCAGCAAACCA   >  SRR4302540.3103360/1‑94 (MQ=60)

                                                                                             GTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCGGCGGCAAAAAACCGTGTGCGACCAGCAAACCAG  >  SRR4302540.9135659/1‑94 (MQ=60)

                                                                                             GTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCGGCGGCAAAAAACCGTGTGCGACCAGCAAACCAG  >  SRR4302540.9066290/1‑94 (MQ=60)

TTTTTAAAGGCGTCCGGAATAATGCGCTGGCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATATCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCGGCGGCAAAAAACCGTGTGCGACCAGCAAACCAG  >  NC_000913/4518969‑4519155

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 7 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`