Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1624	250.6	12620048	98.0%	12367647	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,519,062	A→G	I176T (ATA→ACA)	yjhF ←	putative transport system permease

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,519,062	0	A	G	100.0%	807.4 / NA	245	I176T (ATA→ACA)	yjhF	putative transport system permease
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (125/120); total (125/120)

Only 100 of 253 total aligned reads displayed.

TTAAAGGCGTCCGGAATAATGCGCTGGCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATATCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCGGCGGCAAAAAACCGTGTGCGACCAGCAAA  >  NC_000913/4518972‑4519151

ttAAAGGCGTCCGGAATAATGCGCTGGCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTc                                                                                         <  2:6257438/93‑1 (MQ=255)

  aaaGGCGTCCGGAATAATGCGCTGGCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAg                                                                                       <  2:157491/93‑1 (MQ=255)

  aaaGGCGTCCGGAATAATGCGCTGGCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAg                                                                                       <  2:2982677/93‑1 (MQ=255)

   aaGGCGTCCGGAATAATGCGCTGGCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGt                                                                                      <  1:4161550/93‑1 (MQ=255)

   aaGGCGTCCGGAATAATGCGCTGGCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGt                                                                                      <  1:2452245/93‑1 (MQ=255)

     ggCGTCCGGAATAATGCGCTGGCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTAc                                                                                    <  2:4793416/93‑1 (MQ=255)

         tCCGGAATAATGCGCTGGCAGAATTTATTCAATACCGGGCCGCAACGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAAt                                                                                >  1:4089840/1‑93 (MQ=255)

         tCCGGAATAATGCGCTGGCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAAt                                                                                >  2:3942339/1‑93 (MQ=255)

         tCCGGAATAATGCGCTGGCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAAt                                                                                >  1:1048657/1‑93 (MQ=255)

          ccGGAATACTGCGCTGGCAGAATTTATTCAATACCGGGCCGCAAAGACTAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATc                                                                               >  2:4574001/1‑93 (MQ=255)

           cGGAATAATGCGCTGGCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATcc                                                                              <  1:1785082/93‑1 (MQ=255)

           cGGAATAATGCGCTGGCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATcc                                                                              >  2:4599125/1‑93 (MQ=255)

           cGGAATAATGCGCTGGCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATcc                                                                              <  1:6172149/93‑1 (MQ=255)

            ggAATAATGCGCTGGCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCt                                                                             <  1:5589869/93‑1 (MQ=255)

             gAATAATGCGCTGGCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTa                                                                            >  2:235472/1‑93 (MQ=255)

             gAATAATGCGCTGGCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTa                                                                            >  1:5406676/1‑93 (MQ=255)

             gAATAATGCGCTGGCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTa                                                                            >  1:887824/1‑93 (MQ=255)

             gAATAATGCGCTGGCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTa                                                                            >  1:2393612/1‑93 (MQ=255)

               ataatGCGCTGGCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACa                                                                          <  2:4364049/93‑1 (MQ=255)

                 aatGCGCTGGCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATc                                                                        <  1:3136050/93‑1 (MQ=255)

                 aatGCGCTGGCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATc                                                                        <  1:1596205/93‑1 (MQ=255)

                  atGCGCTGGCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCa                                                                       <  2:84417/93‑1 (MQ=255)

                  atGCGCTGGCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCa                                                                       >  1:5346615/1‑93 (MQ=255)

                       cTGGCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGcc                                                                  <  2:559919/93‑1 (MQ=255)

                       cTGGCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGcc                                                                  >  1:1432148/1‑93 (MQ=255)

                        tGGCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCa                                                                 >  1:823625/1‑93 (MQ=255)

                        tGGCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCa                                                                 >  2:5635185/1‑93 (MQ=255)

                        tGGCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGCTGGAATGCCGACAATGATACCGCATGTCAGTACCAATCCTACATCAGCGACa                                                                 >  2:1094461/1‑93 (MQ=255)

                        tGGCAGAATTTATTAAATTCCGGCCCGCAAAGAATAAAGATTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCa                                                                 <  2:2417193/93‑1 (MQ=255)

                         ggCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCat                                                                >  1:643961/1‑93 (MQ=255)

                          gCAGAACTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCata                                                               <  2:1386594/93‑1 (MQ=255)

                           cAGAATTTATTCAATCCCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCatat                                                              <  1:4939858/93‑1 (MQ=255)

                            aGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATAtt                                                             <  1:2542395/93‑1 (MQ=255)

                             gAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTc                                                            >  1:4495195/1‑93 (MQ=255)

                               aTTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTccc                                                          <  2:2717188/93‑1 (MQ=255)

                                tttATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATCTTCCCt                                                         >  2:1686557/1‑93 (MQ=255)

                                  tATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTgg                                                       <  2:5180899/93‑1 (MQ=255)

                                  tATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTgg                                                       <  1:3707085/93‑1 (MQ=255)

                                     tCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGa                                                    >  1:1211096/1‑93 (MQ=255)

                                     tCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGa                                                    >  2:652972/1‑93 (MQ=255)

                                      cAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGAt                                                   >  1:5728550/1‑93 (MQ=255)

                                       aaTACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATa                                                  <  2:1840331/93‑1 (MQ=255)

                                       aaTACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATa                                                  <  2:5396977/93‑1 (MQ=255)

                                       aaTACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATa                                                  <  1:3610497/93‑1 (MQ=255)

                                         tACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAAc                                                <  2:3115072/93‑1 (MQ=255)

                                         tACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAAc                                                >  1:3081426/1‑93 (MQ=255)

                                          aCCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACa                                               <  1:2571486/93‑1 (MQ=255)

                                           ccGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAg                                              >  2:2236321/1‑93 (MQ=255)

                                             gggCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTc                                            >  2:1779818/1‑93 (MQ=255)

                                             gggCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTc                                            <  2:2070050/93‑1 (MQ=255)

                                              ggCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCg                                           <  2:5749891/93‑1 (MQ=255)

                                              ggCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCg                                           >  1:2257553/1‑93 (MQ=255)

                                                 cGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGc                                        <  1:3163035/93‑1 (MQ=255)

                                                 cGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGc                                        <  2:4174278/93‑1 (MQ=255)

                                                 cGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGc                                        <  2:1347118/93‑1 (MQ=255)

                                                 cGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGc                                        >  2:2145535/1‑93 (MQ=255)

                                                   cAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCg                                      >  1:1937865/1‑93 (MQ=255)

                                                   cAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCg                                      >  2:5990578/1‑93 (MQ=255)

                                                     aaGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCggg                                    <  2:2544292/93‑1 (MQ=255)

                                                     aaGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCggg                                    <  2:5522428/93‑1 (MQ=255)

                                                      aGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCgggg                                   <  1:3882620/93‑1 (MQ=255)

                                                       gAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGt                                  <  1:2905041/93‑1 (MQ=255)

                                                        aaTAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTg                                 >  1:5234800/1‑93 (MQ=255)

                                                          tAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTgcg                               >  1:1019812/1‑93 (MQ=255)

                                                          tAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTgcg                               >  1:3060661/1‑93 (MQ=255)

                                                          aaaaGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTgcg                               <  1:4369976/92‑1 (MQ=255)

                                                           aaaGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTgcgg                              >  2:5331622/1‑93 (MQ=255)

                                                             aGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTgcggcg                            <  2:2754256/93‑1 (MQ=255)

                                                              ggTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGcggcgg                           <  2:1586652/93‑1 (MQ=255)

                                                                  ggAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCGGCGGCaaa                       >  1:5678565/1‑93 (MQ=255)

                                                                   gAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCGGCGGCaaaa                      <  1:4743478/93‑1 (MQ=255)

                                                                   gAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCGGCGGCaaaa                      <  1:1346930/93‑1 (MQ=255)

                                                                   gAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCGGCGGCaaaa                      >  2:3984351/1‑93 (MQ=255)

                                                                      tGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCGGCGGCAAAAAAc                   >  2:1726757/1‑93 (MQ=255)

                                                                        ccGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCGGCGGCCAAAAACCg                 >  2:3479788/1‑93 (MQ=255)

                                                                         cGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCGGCGGCAAAAAACCgt                >  2:698110/1‑93 (MQ=255)

                                                                         cGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCGGCGGCAAAAAACCgt                <  2:332776/93‑1 (MQ=255)

                                                                         cGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCGGCGGCAAAAAACCgt                >  2:4983469/1‑93 (MQ=255)

                                                                         cGACAATGATACCGTATGTCAGTACCAATCCTACATCAGAGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGAGCGGCGGCAAAAAACCgt                >  1:4017598/1‑93 (MQ=255)

                                                                          gACAATGATACCGTATGTCAGTACCAAGCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCGGCGGCAAAAAACCgcg               >  1:4387877/1‑91 (MQ=255)

                                                                           aCAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCGGCGGCAAAAAACCgtgt              >  1:5897192/1‑93 (MQ=255)

                                                                           aCAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCGGCGGCAAAAAACCgtgt              >  1:3292007/1‑93 (MQ=255)

                                                                           aCAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCGGCGGCAAAAAACCgtgt              <  2:1045116/93‑1 (MQ=255)

                                                                           aCAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCGGCGGCAAAAAACCgtgt              >  1:3783599/1‑93 (MQ=255)

                                                                           aCAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCGGCGGCAAAAAACCgtgt              >  1:5980503/1‑93 (MQ=255)

                                                                            cAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCGGCGGCAAAAAACCGtgtg             <  1:2114002/93‑1 (MQ=255)

                                                                            cAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCGGCGGCAAAAAACCGtgtg             >  2:4101251/1‑93 (MQ=255)

                                                                               tGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCGGCGGCAAAAAACCGTGTGCGa          >  1:5517957/1‑93 (MQ=255)

                                                                               tGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCGGCGGCAAAAAACCGTGTGCGa          >  1:732430/1‑93 (MQ=255)

                                                                               tGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCGGCGGCAAAAAACCGTGCGCGa          <  2:6029735/93‑1 (MQ=255)

                                                                                gATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCGGCGGCAAAAAACCGTGTGCGAc         <  1:2764610/93‑1 (MQ=255)

                                                                                gATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCGGCGGCAAAAAACCGTGTGCGAc         >  2:400929/1‑93 (MQ=255)

                                                                                 aTACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCGGCGGCAAAAAACCGTGTGCGAcc        <  1:3486406/93‑1 (MQ=255)

                                                                                  tACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCGGCGGCAAAAAACCGTGTGCGACCa       >  1:5170856/1‑93 (MQ=255)

                                                                                   aCCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGTCCGGGGTGCGGCGGCAAAAAACCGTGTGCGACCAg      >  1:4142798/1‑93 (MQ=255)

                                                                                   aCCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCGGCGGCAAAAAACCGTGTGCGACCAg      >  2:3895679/1‑93 (MQ=255)

                                                                                   aCCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCGGCGGCAAAAAACCGTGTGCGACCAg      >  2:6289528/1‑93 (MQ=255)

                                                                                    ccGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCGGCGGCAAAAAACCGTGTGCGACCAGc     >  1:2818433/1‑93 (MQ=255)

                                                                                       tatgTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCGGCGGCAAAAAACCGTGTGCGACCAGCaaa  >  2:1916538/1‑93 (MQ=255)

                                                                                       tatgTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCGGCGGCAAAAAACCGTGTGCGACCAGCaaa  <  2:3704649/93‑1 (MQ=255)

TTAAAGGCGTCCGGAATAATGCGCTGGCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATATCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCGGCGGCAAAAAACCGTGTGCGACCAGCAAA  >  NC_000913/4518972‑4519151

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

TTAAAGGCGTCCGGAATAATGCGCTGGCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATATCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCGGCGGCAAAAAACCGTGTGCGACCAGCAAACC  >  NC_000913/4518972‑4519153

TTAAAGGCGTCCGGAATAATGCGCTGGCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCA                                                                                          <  SRR4302533.5565655/94‑1 (MQ=60)

TTAAAGGCGTCCGGAATAATGCGCTGGCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCA                                                                                          <  SRR4302533.5327670/94‑1 (MQ=60)

 TAAAGGCGTCCGGAATAATGCGCTGGCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAG                                                                                         >  SRR4302533.3730239/1‑94 (MQ=60)

 TAAAGGCGTCCGGAATAATGCGCTGGCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAG                                                                                         <  SRR4302533.1712166/94‑1 (MQ=60)

  AAAGGCGTCCGGAATAATGCGCTGGCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGT                                                                                        >  SRR4302533.725347/1‑94 (MQ=60)

   AAGGCGTCCGGAATAATGCGCTGGCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTA                                                                                       <  SRR4302533.4186768/94‑1 (MQ=60)

   AAGGCGTCCGGAATAATGCGCTGGCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTA                                                                                       <  SRR4302533.2467381/94‑1 (MQ=60)

    AGGCGTCCGGAATAATGCGCTGGCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTAC                                                                                      <  SRR4302533.2068253/94‑1 (MQ=60)

      GCGTCCGGAATAATGCGCTGGCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCA                                                                                    <  SRR4302533.5161975/94‑1 (MQ=60)

        GTCCGGAATAATGCGCTGGCAGAATTTATTCAATACCGGGCCGCAACGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAAT                                                                                  >  SRR4302533.4114738/1‑94 (MQ=60)

        GTCCGGAATAATGCGCTGGCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAAT                                                                                  >  SRR4302533.975354/1‑94 (MQ=60)

        GTCCGGAATAATGCGCTGGCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAAT                                                                                  >  SRR4302533.1054822/1‑94 (MQ=60)

          CCGGAATAATGCGCTGGCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCC                                                                                >  SRR4302533.3844993/1‑94 (MQ=60)

          CCGGAATAATGCGCTGGCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCC                                                                                <  SRR4302533.5702393/94‑1 (MQ=60)

          CCGGAATAATGCGCTGGCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCC                                                                                <  SRR4302533.440201/94‑1 (MQ=60)

           CGGAATAATGCGCTGGCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCT                                                                               <  SRR4302533.1795938/94‑1 (MQ=60)

           CGGAATAATGCGCTGGCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCT                                                                               <  SRR4302533.6209239/94‑1 (MQ=60)

           CGGAATAATGCGCTGGCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCT                                                                               >  SRR4302533.4691160/1‑94 (MQ=60)

           CGGAATAATGCGCTGGCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCT                                                                               >  SRR4302533.361629/1‑94 (MQ=60)

            GGAATAATGCGCTGGCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTA                                                                              <  SRR4302533.5623638/94‑1 (MQ=60)

            GGAATAATGCGCTGGCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTA                                                                              >  SRR4302533.893034/1‑94 (MQ=60)

            GGAATAATGCGCTGGCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTA                                                                              >  SRR4302533.5439167/1‑94 (MQ=60)

            GGAATAATGCGCTGGCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTA                                                                              >  SRR4302533.2408387/1‑94 (MQ=60)

            GGAATAATGCGCTGGCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTA                                                                              >  SRR4302533.278245/1‑94 (MQ=60)

              AATAATGCGCTGGCAGAATTTATTCAATACCGGTCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACA                                                                            <  SRR4302533.1419997/94‑1 (MQ=60)

                 AATGCGCTGGCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCA                                                                         >  SRR4302533.4827061/1‑94 (MQ=60)

                 AATGCGCTGGCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCA                                                                         <  SRR4302533.3155334/94‑1 (MQ=60)

                 AATGCGCTGGCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCA                                                                         <  SRR4302533.1605868/94‑1 (MQ=60)

                 AATGCGCTGGCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCA                                                                         >  SRR4302533.5378689/1‑94 (MQ=60)

                 AATGCGCTGGCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCA                                                                         >  SRR4302533.3098403/1‑94 (MQ=60)

                  ATGCGCTGGCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAG                                                                        <  SRR4302533.1393153/94‑1 (MQ=60)

                  ATGCGCTGGCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAG                                                                        <  SRR4302533.2508445/94‑1 (MQ=60)

                   TGCGCTGGCAGAATTTATTCAATACCGGACCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGC                                                                       <  SRR4302533.408576/94‑1 (MQ=60)

                      GCTGGCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCC                                                                    >  SRR4302533.1440803/1‑94 (MQ=60)

                       CTGGCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCA                                                                   >  SRR4302533.2446462/1‑94 (MQ=60)

                       CTGGCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCA                                                                   >  SRR4302533.828457/1‑94 (MQ=60)

                       CTGGCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCA                                                                   >  SRR4302533.1612983/1‑94 (MQ=60)

                        TGGCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCAT                                                                  >  SRR4302533.647751/1‑94 (MQ=60)

                        TGGCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCAT                                                                  <  SRR4302533.3017762/94‑1 (MQ=60)

                         GGCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATA                                                                 <  SRR4302533.1047604/94‑1 (MQ=60)

                         GGCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATA                                                                 >  SRR4302533.4121041/1‑94 (MQ=60)

                           CAGAATTTATTCAATCCCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATT                                                               <  SRR4302533.4969761/94‑1 (MQ=60)

                           CAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATT                                                               >  SRR4302533.667848/1‑94 (MQ=60)

                            AGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTC                                                              >  SRR4302533.4522416/1‑94 (MQ=60)

                            AGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTC                                                              <  SRR4302533.2558043/94‑1 (MQ=60)

                              AATTTATCCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCC                                                            <  SRR4302533.534234/94‑1 (MQ=60)

                                  TATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGC                                                        <  SRR4302533.3729853/94‑1 (MQ=60)

                                  TATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGC                                                        >  SRR4302533.2378985/1‑94 (MQ=60)

                                  TATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGC                                                        >  SRR4302533.2070701/1‑94 (MQ=60)

                                  TATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGC                                                        >  SRR4302533.3318677/1‑94 (MQ=60)

                                   ATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCG                                                       <  SRR4302533.2892223/94‑1 (MQ=60)

                                   ATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCACTGGCG                                                       >  SRR4302533.4290716/1‑94 (MQ=60)

                                    TTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGA                                                      >  SRR4302533.1218365/1‑94 (MQ=60)

                                     TCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGAT                                                     <  SRR4302533.2584219/94‑1 (MQ=60)

                                     TCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGAT                                                     >  SRR4302533.5763145/1‑94 (MQ=60)

                                      CAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATA                                                    >  SRR4302533.565647/1‑94 (MQ=60)

                                      CAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATA                                                    <  SRR4302533.1504/94‑1 (MQ=60)

                                       AATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAA                                                   <  SRR4302533.3632718/94‑1 (MQ=60)

                                       AATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAA                                                   <  SRR4302533.107883/94‑1 (MQ=60)

                                        ATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAAC                                                  <  SRR4302533.2927401/94‑1 (MQ=60)

                                        ATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAAC                                                  >  SRR4302533.3100333/1‑94 (MQ=60)

                                          ACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAG                                                <  SRR4302533.2587310/94‑1 (MQ=60)

                                          ACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAG                                                >  SRR4302533.3118855/1‑94 (MQ=60)

                                           CCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGT                                               <  SRR4302533.3200361/94‑1 (MQ=60)

                                            CGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTC                                              <  SRR4302533.3263550/94‑1 (MQ=60)

                                            CGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTC                                              >  SRR4302533.2666402/1‑94 (MQ=60)

                                             GGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCG                                             >  SRR4302533.2271522/1‑94 (MQ=60)

                                              GGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGG                                            <  SRR4302533.2318285/94‑1 (MQ=60)

                                              GGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGG                                            <  SRR4302533.4511739/94‑1 (MQ=60)

                                               GCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGG                                           <  SRR4302533.5396628/94‑1 (MQ=60)

                                                CCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGC                                          >  SRR4302533.4185828/1‑94 (MQ=60)

                                                 CGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCC                                         <  SRR4302533.3182505/94‑1 (MQ=60)

                                                  GCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCG                                        >  SRR4302533.1949680/1‑94 (MQ=60)

                                                   CAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGG                                       >  SRR4302533.6012566/1‑94 (MQ=60)

                                                   CAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGG                                       <  SRR4302533.3781419/94‑1 (MQ=60)

                                                   CAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGG                                       <  SRR4302533.833225/94‑1 (MQ=60)

                                                    AAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGG                                      <  SRR4302533.6256983/94‑1 (MQ=60)

                                                     AAGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGG                                     <  SRR4302533.5443162/94‑1 (MQ=60)

                                                      AGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGT                                    <  SRR4302533.391090/94‑1 (MQ=60)

                                                      AGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGT                                    <  SRR4302533.5126355/94‑1 (MQ=60)

                                                      AGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGT                                    <  SRR4302533.6187073/94‑1 (MQ=60)

                                                      AGAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGT                                    <  SRR4302533.3906312/94‑1 (MQ=60)

                                                       GAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTG                                   >  SRR4302533.5266278/1‑94 (MQ=60)

                                                       GAATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTG                                   <  SRR4302533.2922883/94‑1 (MQ=60)

                                                         ATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCG                                 <  SRR4302533.4449535/94‑1 (MQ=60)

                                                         ATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCG                                 >  SRR4302533.1025805/1‑94 (MQ=60)

                                                         ATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCG                                 >  SRR4302533.3079445/1‑94 (MQ=60)

                                                         ATAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGGGCG                                 >  SRR4302533.1135517/1‑94 (MQ=60)

                                                          AAAAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCGG                                <  SRR4302533.4396359/94‑1 (MQ=60)

                                                            AAGGTTGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCGGCG                              >  SRR4302533.4552565/1‑94 (MQ=60)

                                                                 TGGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCGGCGGCAAA                         >  SRR4302533.5712862/1‑94 (MQ=60)

                                                                  GGAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCGGCGGCAAAA                        >  SRR4302533.612649/1‑94 (MQ=60)

                                                                   GAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCGGCGGCAAAAA                       <  SRR4302533.1355036/94‑1 (MQ=60)

                                                                   GAATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCGGCGGCAAAAA                       <  SRR4302533.4772234/94‑1 (MQ=60)

                                                                    AATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCGGCGGCAAAAAA                      >  SRR4302533.3592423/1‑94 (MQ=60)

                                                                    AATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCGGCGGCAAAAAA                      >  SRR4302533.847482/1‑94 (MQ=60)

                                                                     ATGCCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCGGCGGCAAAAAAC                     >  SRR4302533.5894047/1‑94 (MQ=60)

                                                                        CCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCGGCGGCAAAAAACCGT                  <  SRR4302533.2488321/94‑1 (MQ=60)

                                                                        CCGACAATGATACCGTATGTCAGTACCAATCCTACATCAGAGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGAGCGGCGGCAAAAAACCGT                  >  SRR4302533.4042059/1‑94 (MQ=60)

                                                                         CGACAATGATACCGTATGTCAGTACCAAGCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCGGCGGCAAAAAACCGCG                 >  SRR4302533.4414368/1‑94 (MQ=60)

                                                                          GACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCGGCGGCAAAAAACCGTGT                >  SRR4302533.5932806/1‑94 (MQ=60)

                                                                          GACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCGGCGGCAAAAAACCGTGT                >  SRR4302533.6016725/1‑94 (MQ=60)

                                                                          GACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCGGCGGCAAAAAACCGTGT                >  SRR4302533.1830225/1‑94 (MQ=60)

                                                                          GACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCGGCGGCAAAAAACCGTGT                >  SRR4302533.3312329/1‑94 (MQ=60)

                                                                          GACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCGGCGGCAAAAAACCGTGT                <  SRR4302533.3656756/94‑1 (MQ=60)

                                                                          GACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCGGCGGCAAAAAACCGTGT                >  SRR4302533.3806766/1‑94 (MQ=60)

                                                                          GACAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCGGCGGCAAAAAACCGTGT                <  SRR4302533.4039770/94‑1 (MQ=60)

                                                                            CAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCGGCGGCAAAAAACCGTGTGC              <  SRR4302533.2127037/94‑1 (MQ=60)

                                                                            CAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCGGCGGCAAAAAACCGTGTGC              >  SRR4302533.316885/1‑94 (MQ=60)

                                                                            CAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCGGCGGCAAAAAACCGTGTGC              >  SRR4302533.4161811/1‑94 (MQ=60)

                                                                            CAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCGGCGGCAAAAAACCGTGTGC              <  SRR4302533.2656967/94‑1 (MQ=60)

                                                                            CAATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCGGCGGCAAAAAACCGTGTGC              <  SRR4302533.900166/94‑1 (MQ=60)

                                                                             AATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCGGCGGCAAAAAACCGTGTGCG             >  SRR4302533.1351185/1‑94 (MQ=60)

                                                                              ATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCGGCGGCAAAAAACCGTGTGCGA            >  SRR4302533.736740/1‑94 (MQ=60)

                                                                              ATGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCGGCGGCAAAAAACCGTGTGCGA            >  SRR4302533.5551274/1‑94 (MQ=60)

                                                                               TGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCGGCGGCAAAAAACCGTGTGCGAC           >  SRR4302533.5814531/1‑94 (MQ=60)

                                                                               TGATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCGGCGGCAAAAAACCGTGTGCGAC           <  SRR4302533.2852080/94‑1 (MQ=60)

                                                                                GATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCGGCGGCAAAAAACCGTGTGCGACC          <  SRR4302533.3106858/94‑1 (MQ=60)

                                                                                GATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCGGCGGCAAAAAACCGTGTGCGACC          <  SRR4302533.2781560/94‑1 (MQ=60)

                                                                                 ATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCGGCGGCAAAAAACCGTGTGCGACCA         <  SRR4302533.3507906/94‑1 (MQ=60)

                                                                                 ATACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCGGCGGCAAAAAACCGTGTGCGACCA         >  SRR4302533.5202062/1‑94 (MQ=60)

                                                                                  TACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGTCCGGGGTGCGGCGGCAAAAAACCGTGTGCGACCAG        >  SRR4302533.4167915/1‑94 (MQ=60)

                                                                                  TACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCGGCGGCAAAAAACCGTGTGCGACCAG        <  SRR4302533.4211809/94‑1 (MQ=60)

                                                                                   ACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCGGCGGCAAAAAACCGTGTGCGACCAGC       >  SRR4302533.2835778/1‑94 (MQ=60)

                                                                                   ACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCGGCGGCAAAAAACCGTGTGCGACCAGC       >  SRR4302533.571932/1‑94 (MQ=60)

                                                                                   ACCGTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCGGCGGCAAAAAACCGTGTGCGACCAGC       >  SRR4302533.5215643/1‑94 (MQ=60)

                                                                                      GTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCGGCGGCAAAAAACCGTGTGCGACCAGCAAA    >  SRR4302533.2138509/1‑94 (MQ=60)

                                                                                      GTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCGGCGGCAAAAAACCGTGTGCGACCAGCAAA    <  SRR4302533.5495135/94‑1 (MQ=60)

                                                                                      GTATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGACGGGCCGGGGAGCGGCGGCAAAAAACCGTactcgaccagcaca    >  SRR4302533.778236/1‑80 (MQ=60)

                                                                                       TATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCGGCGGCAAAAAACCGTGTGCGACCAGCAAAC   >  SRR4302533.591386/1‑94 (MQ=60)

                                                                                        ATGTCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCGGCGGCAAAAAACCGTGTGCGACCAGCAAACC  <  SRR4302533.3375921/94‑1 (MQ=60)

TTAAAGGCGTCCGGAATAATGCGCTGGCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATATCAGTACCAATCCTACATCAGCGCCATATTCCCTGGCGATAACAGTCGGGCCGGGGTGCGGCGGCAAAAAACCGTGTGCGACCAGCAAACC  >  NC_000913/4518972‑4519153

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 19 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`