Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 1548 369.5 20095359 96.9% 19472402 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,544,274 T→C L537P (CTC→CCC)  fimD → FimD

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,544,2740TC99.8% 1821.3 / ‑5.6 563L537P (CTC→CCC) fimDFimD
Reads supporting (aligned to +/- strand):  ref base T (1/0);  new base C (247/315);  total (248/315)
Fisher's exact test for biased strand distribution p-value = 4.40e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.71e-01

Only 100 of 574 total aligned reads displayed.

GAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACTCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCAGGCTGGATTAA  >  NC_000913/4544184‑4544363
                                                                                          |                                                                                         
gAGTTATTCAGGTTAAGCCTAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTCCTCAGCAACCCg                                                                                         <  2:5204015/93‑1 (MQ=255)
gAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCg                                                                                         >  2:9736681/1‑93 (MQ=255)
 aGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCgg                                                                                        <  1:1572375/93‑1 (MQ=255)
  gTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCggg                                                                                       <  1:1909193/93‑1 (MQ=255)
   ttATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGgc                                                                                      >  1:8470117/1‑93 (MQ=255)
     aTTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGgcgc                                                                                    <  2:6617305/93‑1 (MQ=255)
      ttCAGGTTAAGCCGAAATTCACCGACTAGTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGca                                                                                   <  1:217950/93‑1 (MQ=255)
         aGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACAt                                                                                <  1:888253/93‑1 (MQ=255)
          ggTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATc                                                                               >  2:5367234/1‑93 (MQ=255)
          ggTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATc                                                                               >  1:9080831/1‑93 (MQ=255)
          ggTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATc                                                                               >  2:2934636/1‑93 (MQ=255)
            ttAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCaa                                                                             <  1:8769704/93‑1 (MQ=255)
             tAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAac                                                                            >  1:6324116/1‑93 (MQ=255)
             tAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAac                                                                            <  2:2734699/93‑1 (MQ=255)
               aGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAacac                                                                          <  2:3218034/93‑1 (MQ=255)
               aGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAacac                                                                          <  2:4934780/93‑1 (MQ=255)
                gCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACt                                                                         >  2:262448/1‑93 (MQ=255)
                   gAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTa                                                                      <  2:6009385/93‑1 (MQ=255)
                   gAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTa                                                                      >  2:7755589/1‑93 (MQ=255)
                   gAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTa                                                                      <  1:1102047/93‑1 (MQ=255)
                    aaaTTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTAt                                                                     >  2:1758674/1‑93 (MQ=255)
                       ttCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTg                                                                  <  1:6595240/93‑1 (MQ=255)
                       ttCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTg                                                                  >  1:6834975/1‑93 (MQ=255)
                        tCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGa                                                                 >  2:6766895/1‑93 (MQ=255)
                        tCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGa                                                                 <  1:4161032/93‑1 (MQ=255)
                          cccGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCCCCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGt                                                               <  1:1783337/92‑1 (MQ=255)
                          aCCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGt                                                               <  2:5451771/93‑1 (MQ=255)
                             gACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGt                                                            <  1:2018724/93‑1 (MQ=255)
                             gACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGt                                                            <  2:4674300/93‑1 (MQ=255)
                              aCTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTa                                                           <  2:7905549/93‑1 (MQ=255)
                               cTATTACACCCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAg                                                          <  2:3894192/93‑1 (MQ=255)
                               cTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAg                                                          >  1:7926310/1‑93 (MQ=255)
                               cTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAg                                                          <  1:7509258/93‑1 (MQ=255)
                                 aTTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGcc                                                        >  1:9568493/1‑93 (MQ=255)
                                 aTTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGcc                                                        >  2:3080837/1‑93 (MQ=255)
                                 aTTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGcc                                                        >  2:824155/1‑93 (MQ=255)
                                  ttACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCa                                                       <  2:6163267/93‑1 (MQ=255)
                                    aCAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATc                                                     >  2:5057439/1‑93 (MQ=255)
                                     cAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCa                                                    <  1:3826869/93‑1 (MQ=255)
                                      aaCCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCaa                                                   <  2:1456640/93‑1 (MQ=255)
                                       aCCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCaaa                                                  >  1:1468974/1‑93 (MQ=255)
                                          tCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACtt                                               >  2:1961840/1‑93 (MQ=255)
                                           cGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTa                                              <  2:1381528/93‑1 (MQ=255)
                                           cGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTa                                              >  1:10001339/1‑93 (MQ=255)
                                            gCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTAt                                             <  2:3980993/93‑1 (MQ=255)
                                            gCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTAt                                             <  2:5562599/93‑1 (MQ=255)
                                               tataACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTgg                                          <  1:7767327/93‑1 (MQ=255)
                                               tataACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTgg                                          >  1:5166087/1‑93 (MQ=255)
                                               tataACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTgg                                          >  1:9387984/1‑93 (MQ=255)
                                                ataACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTggg                                         <  2:6980881/93‑1 (MQ=255)
                                                 taACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTgggg                                        >  1:2977709/1‑93 (MQ=255)
                                                  aaCAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGa                                       >  1:4797120/1‑93 (MQ=255)
                                                   aCAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGaa                                      <  1:5961585/93‑1 (MQ=255)
                                                    cAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAAc                                     >  1:3642244/1‑93 (MQ=255)
                                                    cAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAAc                                     <  1:3989040/93‑1 (MQ=255)
                                                    cAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAAc                                     <  1:4335453/93‑1 (MQ=255)
                                                       aCGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAg                                  <  1:4579237/93‑1 (MQ=255)
                                                       aCGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAg                                  <  2:7052934/93‑1 (MQ=255)
                                                        cgcgGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGt                                 >  2:3472796/1‑93 (MQ=255)
                                                         gcgGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTa                                <  2:10020785/93‑1 (MQ=255)
                                                           gggAAATTACAACTCGCCGTTACACAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAAt                              <  1:8562145/93‑1 (MQ=255)
                                                           gggAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCACACTTATTGGGGAACGAGTCAt                              >  1:5444806/1‑93 (MQ=255)
                                                           gggAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAAt                              <  2:2563840/93‑1 (MQ=255)
                                                             gAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGt                            <  1:6148732/93‑1 (MQ=255)
                                                             gAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGt                            >  1:2594532/1‑93 (MQ=255)
                                                              aaaTTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTc                           <  1:9283786/93‑1 (MQ=255)
                                                              aaaTTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTc                           <  2:3716244/93‑1 (MQ=255)
                                                                aTTACACCTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGa                         <  2:92995/93‑1 (MQ=255)
                                                                aTTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGa                         <  2:6402085/93‑1 (MQ=255)
                                                                aTTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGa                         >  2:1144504/1‑93 (MQ=255)
                                                                aTTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGa                         <  2:5747186/93‑1 (MQ=255)
                                                                aTTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGa                         <  1:3195588/93‑1 (MQ=255)
                                                                aTTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGa                         <  2:4597376/93‑1 (MQ=255)
                                                                 ttACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGAt                        >  1:7314720/1‑93 (MQ=255)
                                                                 ttACAACTCAACGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGAt                        >  2:883566/1‑93 (MQ=255)
                                                                  tACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATg                       <  1:9897289/93‑1 (MQ=255)
                                                                   aCAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGa                      <  1:2438830/93‑1 (MQ=255)
                                                                    cAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAg                     <  1:3525491/93‑1 (MQ=255)
                                                                     aaCTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGc                    <  2:9481534/93‑1 (MQ=255)
                                                                     aaCTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGc                    <  1:5557637/93‑1 (MQ=255)
                                                                      aCTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCa                   >  2:4387301/1‑93 (MQ=255)
                                                                      aCTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCa                   >  1:530703/1‑93 (MQ=255)
                                                                      aCTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCa                   >  2:1647864/1‑93 (MQ=255)
                                                                        cccccGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAAt                 <  1:8114959/90‑1 (MQ=255)
                                                                         cACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAAtt                >  1:7084770/1‑93 (MQ=255)
                                                                         cACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAAtt                <  2:889170/93‑1 (MQ=255)
                                                                          aCCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTc               >  2:9051066/1‑93 (MQ=255)
                                                                            cGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCa             <  2:7247046/93‑1 (MQ=255)
                                                                            cGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCa             >  2:4056314/1‑93 (MQ=255)
                                                                             gTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCAg            <  2:2170477/93‑1 (MQ=255)
                                                                              ttACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCAgg           >  2:4861612/1‑93 (MQ=255)
                                                                               tACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCAGGc          <  2:6152086/93‑1 (MQ=255)
                                                                                 cTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCAGGCTg        >  2:7504063/1‑93 (MQ=255)
                                                                                 cTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCAGGCTg        >  2:8565647/1‑93 (MQ=255)
                                                                                  tCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCAGGCTgg       >  1:8171230/1‑93 (MQ=255)
                                                                                  tCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCAGGCTgg       <  1:281756/93‑1 (MQ=255)
                                                                                   cAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCAGGCTGGa      >  2:8422887/1‑93 (MQ=255)
                                                                                    aGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCAGGCTGGAt     >  1:121812/1‑93 (MQ=255)
                                                                                     gCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCAGGCTGGAtt    <  2:3363305/93‑1 (MQ=255)
                                                                                       aaCCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCAGGCTGGATTaa  <  2:2242241/93‑1 (MQ=255)
                                                                                          |                                                                                         
GAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACTCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCAGGCTGGATTAA  >  NC_000913/4544184‑4544363

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output Only 200 of 293 total aligned reads displayed.
CGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACTCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCAGGCTGGATTAAATAC  >  NC_000913/4544182‑4544367
                                                                                            |                                                                                             
CGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACACCCTCGCTTATAACAAACGCGGGAACTTACAACTCACCGTTACTCAGCAACCC                                                                                              >  SRR4302540.7877993/1‑94 (MQ=60)
CGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCC                                                                                              <  SRR4302540.6488378/94‑1 (MQ=60)
CGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCC                                                                                              <  SRR4302540.8503088/94‑1 (MQ=60)
CGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCC                                                                                              <  SRR4302540.8503087/94‑1 (MQ=60)
CGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCC                                                                                              >  SRR4302540.6267389/1‑94 (MQ=60)
CGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCC                                                                                              <  SRR4302540.8770042/94‑1 (MQ=60)
 GGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCG                                                                                             <  SRR4302540.1151032/94‑1 (MQ=60)
  GAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGG                                                                                            <  SRR4302540.1984913/94‑1 (MQ=60)
   AGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGG                                                                                           <  SRR4302540.1589601/94‑1 (MQ=60)
   AGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGG                                                                                           >  SRR4302540.2180433/1‑94 (MQ=60)
    GTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGC                                                                                          <  SRR4302540.606497/94‑1 (MQ=60)
    GTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGC                                                                                          <  SRR4302540.1930050/94‑1 (MQ=60)
    GTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGC                                                                                          >  SRR4302540.8568476/1‑94 (MQ=60)
       ATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCA                                                                                       >  SRR4302540.8071158/1‑94 (MQ=60)
        TTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCAC                                                                                      >  SRR4302540.6124318/1‑94 (MQ=60)
        TTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCAC                                                                                      <  SRR4302540.2365782/94‑1 (MQ=60)
        TTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCAC                                                                                      <  SRR4302540.5010912/94‑1 (MQ=60)
        TTCAGGTTAAGCCGAAATTCACCGACTAGTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCAC                                                                                      <  SRR4302540.220070/94‑1 (MQ=60)
        TTCAGGTTAAGCCGAAATTCACCGACTAGTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCAC                                                                                      <  SRR4302540.595562/94‑1 (MQ=60)
          CAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACAT                                                                                    <  SRR4302540.9865907/94‑1 (MQ=60)
          CAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACAT                                                                                    <  SRR4302540.6405651/94‑1 (MQ=60)
          CAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACAT                                                                                    <  SRR4302540.3600090/94‑1 (MQ=60)
          CAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACAT                                                                                    >  SRR4302540.9454917/1‑94 (MQ=60)
           AGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATC                                                                                   >  SRR4302540.1755951/1‑94 (MQ=60)
           AGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATC                                                                                   <  SRR4302540.897686/94‑1 (MQ=60)
            GGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCA                                                                                  <  SRR4302540.9453404/94‑1 (MQ=60)
            GGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCA                                                                                  >  SRR4302540.2592447/1‑94 (MQ=60)
            GGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCA                                                                                  >  SRR4302540.7045670/1‑94 (MQ=60)
            GGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCA                                                                                  <  SRR4302540.7314043/94‑1 (MQ=60)
            AGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCA                                                                                  <  SRR4302540.2689101/94‑1 (MQ=60)
              TTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAAC                                                                                <  SRR4302540.5781788/94‑1 (MQ=60)
              TTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAAC                                                                                <  SRR4302540.5781787/94‑1 (MQ=60)
              TTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAAC                                                                                <  SRR4302540.8871340/94‑1 (MQ=60)
               TAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACA                                                                               <  SRR4302540.3865254/94‑1 (MQ=60)
                   CCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGT                                                                           >  SRR4302540.9376876/1‑94 (MQ=60)
                    CGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTA                                                                          <  SRR4302540.3122429/94‑1 (MQ=60)
                    CGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTA                                                                          <  SRR4302540.6324008/94‑1 (MQ=60)
                    CGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTA                                                                          <  SRR4302540.8958622/94‑1 (MQ=60)
                     GAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTAT                                                                         >  SRR4302540.4581532/1‑94 (MQ=60)
                     GAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTAT                                                                         <  SRR4302540.8425457/94‑1 (MQ=60)
                     CAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTAT                                                                         <  SRR4302540.1215436/94‑1 (MQ=60)
                      AAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATT                                                                        <  SRR4302540.342992/94‑1 (MQ=60)
                       AATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTT                                                                       >  SRR4302540.7744657/1‑94 (MQ=60)
                       AATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTT                                                                       <  SRR4302540.3585111/94‑1 (MQ=60)
                       AATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTT                                                                       <  SRR4302540.9021429/94‑1 (MQ=60)
                       AATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGGTAGTAAGCAACCCGGGCGAACATCAAGACTGTATTG                                                                       >  SRR4302540.6421943/1‑94 (MQ=60)
                        ATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTG                                                                      >  SRR4302540.6910677/1‑94 (MQ=60)
                         TTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGA                                                                     >  SRR4302540.9720184/1‑94 (MQ=60)
                          TCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAG                                                                    <  SRR4302540.4206132/94‑1 (MQ=60)
                          TCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAG                                                                    <  SRR4302540.1670974/94‑1 (MQ=60)
                          TCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAG                                                                    <  SRR4302540.9820800/94‑1 (MQ=60)
                          TCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAG                                                                    <  SRR4302540.6235778/94‑1 (MQ=60)
                          TCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAG                                                                    <  SRR4302540.2891998/94‑1 (MQ=60)
                          TCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAG                                                                    <  SRR4302540.1084386/94‑1 (MQ=60)
                          TCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAG                                                                    <  SRR4302540.8588672/94‑1 (MQ=60)
                           CACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGT                                                                   >  SRR4302540.9628296/1‑94 (MQ=60)
                           CACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGT                                                                   >  SRR4302540.6565116/1‑94 (MQ=60)
                           CACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGT                                                                   <  SRR4302540.5554118/94‑1 (MQ=60)
                            CCCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCCCCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTG                                                                  <  SRR4302540.1802711/94‑1 (MQ=60)
                            ACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTG                                                                  >  SRR4302540.1509798/1‑94 (MQ=60)
                            ACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTG                                                                  >  SRR4302540.153357/1‑94 (MQ=60)
                            ACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTG                                                                  <  SRR4302540.1802713/94‑1 (MQ=60)
                              CGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGT                                                                <  SRR4302540.10143938/94‑1 (MQ=60)
                              CGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGT                                                                >  SRR4302540.9596753/1‑94 (MQ=60)
                               GACTATTACAACCTCGCTTATAACAAACGCGGGAAATTCCAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTA                                                               <  SRR4302540.371463/94‑1 (MQ=60)
                               GACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTA                                                               >  SRR4302540.9410765/1‑94 (MQ=60)
                               GACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTA                                                               <  SRR4302540.10028752/94‑1 (MQ=60)
                                ACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAG                                                              <  SRR4302540.1161037/94‑1 (MQ=60)
                                 CTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGC                                                             >  SRR4302540.4796660/1‑94 (MQ=60)
                                 CTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGC                                                             >  SRR4302540.6636360/1‑94 (MQ=60)
                                 CTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGC                                                             >  SRR4302540.7783048/1‑94 (MQ=60)
                                 CTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGC                                                             <  SRR4302540.7593193/94‑1 (MQ=60)
                                  TATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCC                                                            >  SRR4302540.4090873/1‑94 (MQ=60)
                                  TATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCC                                                            >  SRR4302540.1548286/1‑94 (MQ=60)
                                  TATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCC                                                            >  SRR4302540.9681558/1‑94 (MQ=60)
                                   ATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCA                                                           <  SRR4302540.1386712/94‑1 (MQ=60)
                                   ATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGCTACTCAGCAACGCGGGCGCACATCAANACTCTATTTGAGTGNGAGNCA                                                           >  SRR4302540.1757965/1‑94 (MQ=60)
                                    TTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCAT                                                          <  SRR4302540.418583/94‑1 (MQ=60)
                                      ACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCA                                                        >  SRR4302540.8936602/1‑94 (MQ=60)
                                       CAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAA                                                       <  SRR4302540.3868513/94‑1 (MQ=60)
                                       CAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAA                                                       >  SRR4302540.2592581/1‑94 (MQ=60)
                                          CCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACT                                                    >  SRR4302540.6242147/1‑94 (MQ=60)
                                           CTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTT                                                   <  SRR4302540.3726148/94‑1 (MQ=60)
                                            TCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTA                                                  <  SRR4302540.8220236/94‑1 (MQ=60)
                                            TCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTA                                                  >  SRR4302540.10117850/1‑94 (MQ=60)
                                             CGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTAT                                                 <  SRR4302540.8982225/94‑1 (MQ=60)
                                             CGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTAT                                                 <  SRR4302540.1873159/94‑1 (MQ=60)
                                              GCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATT                                                <  SRR4302540.4696180/94‑1 (MQ=60)
                                              GCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATT                                                <  SRR4302540.902143/94‑1 (MQ=60)
                                               CTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTG                                               >  SRR4302540.8776271/1‑94 (MQ=60)
                                               CTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTG                                               >  SRR4302540.7999764/1‑94 (MQ=60)
                                                TTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGG                                              >  SRR4302540.9499714/1‑94 (MQ=60)
                                                TTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGG                                              >  SRR4302540.1483877/1‑94 (MQ=60)
                                                TTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATCTGAGTGTTAGCCATCAAACTTATTGG                                              >  SRR4302540.1453619/1‑94 (MQ=60)
                                                 TATAACAAACGCGGGACATTACAGCTCCCCGTTACTCAGCACCCCGGGCGCACATCAACACTGCATTTGAGTGGTAGCCATCAAACTTATTGGG                                             <  SRR4302540.4189504/94‑1 (MQ=60)
                                                 TATAACAAACGCGGGAAATTACAACTCGCCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCAATCAAACTTATTGGG                                             <  SRR4302540.5361455/94‑1 (MQ=60)
                                                 TATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGG                                             <  SRR4302540.7528962/94‑1 (MQ=60)
                                                 TATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGG                                             >  SRR4302540.10031915/1‑94 (MQ=60)
                                                 TATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGG                                             <  SRR4302540.7858134/94‑1 (MQ=60)
                                                  ATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCGATCAAACTTATTGGGG                                            >  SRR4302540.666653/1‑94 (MQ=60)
                                                  ATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTCTTGGGG                                            >  SRR4302540.8096611/1‑94 (MQ=60)
                                                  ATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGG                                            >  SRR4302540.8515146/1‑94 (MQ=60)
                                                  ATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGG                                            >  SRR4302540.1841342/1‑94 (MQ=60)
                                                  ATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGG                                            >  SRR4302540.3010609/1‑94 (MQ=60)
                                                   TAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGA                                           >  SRR4302540.4848458/1‑94 (MQ=60)
                                                   TAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGA                                           >  SRR4302540.121935/1‑94 (MQ=60)
                                                   TAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGA                                           >  SRR4302540.2003515/1‑94 (MQ=60)
                                                     ACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAAC                                         <  SRR4302540.8716847/94‑1 (MQ=60)
                                                     ACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAAC                                         <  SRR4302540.6027533/94‑1 (MQ=60)
                                                     ACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAAC                                         >  SRR4302540.3682135/1‑94 (MQ=60)
                                                     ACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAAC                                         <  SRR4302540.7996334/94‑1 (MQ=60)
                                                      CAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGTGCGCACATCAACACCGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACG                                        >  SRR4302540.4574861/1‑94 (MQ=60)
                                                      CAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACG                                        <  SRR4302540.4382652/94‑1 (MQ=60)
                                                      CAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACG                                        <  SRR4302540.4031980/94‑1 (MQ=60)
                                                       AAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGA                                       <  SRR4302540.8800697/94‑1 (MQ=60)
                                                       AAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGA                                       >  SRR4302540.277679/1‑94 (MQ=60)
                                                         ACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGT                                     >  SRR4302540.6695788/1‑94 (MQ=60)
                                                         ACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGT                                     <  SRR4302540.5842144/94‑1 (MQ=60)
                                                         ACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGT                                     <  SRR4302540.4628613/94‑1 (MQ=60)
                                                          CGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTA                                    <  SRR4302540.5489833/94‑1 (MQ=60)
                                                            CGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCACACTTATTGGGGAACGAGTCAT                                  >  SRR4302540.5504721/1‑94 (MQ=60)
                                                            CGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAAT                                  <  SRR4302540.8205231/94‑1 (MQ=60)
                                                            CGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAAT                                  <  SRR4302540.3133819/94‑1 (MQ=60)
                                                            CGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAAT                                  <  SRR4302540.7589968/94‑1 (MQ=60)
                                                            CGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAAT                                  >  SRR4302540.5504722/1‑94 (MQ=60)
                                                            CGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAAT                                  <  SRR4302540.5098286/94‑1 (MQ=60)
                                                            CGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAAT                                  <  SRR4302540.2283696/94‑1 (MQ=60)
                                                            CGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAAT                                  >  SRR4302540.7005219/1‑94 (MQ=60)
                                                            CGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAAT                                  <  SRR4302540.1958144/94‑1 (MQ=60)
                                                             GGGAAATTACAACTCGCCGTTACACAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATG                                 <  SRR4302540.8661583/94‑1 (MQ=60)
                                                             GGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATG                                 <  SRR4302540.8661577/94‑1 (MQ=60)
                                                             GGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATG                                 <  SRR4302540.5108104/94‑1 (MQ=60)
                                                              GGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGT                                <  SRR4302540.3664853/94‑1 (MQ=60)
                                                               GAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTC                               <  SRR4302540.7903035/94‑1 (MQ=60)
                                                               GAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTC                               <  SRR4302540.6217217/94‑1 (MQ=60)
                                                               GAAAGTACAACTCGCCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGGAGCAATCAAACTTATTGGGGAACGAGTAATGTC                               <  SRR4302540.5457113/94‑1 (MQ=60)
                                                                AAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCG                              >  SRR4302540.9314876/1‑94 (MQ=60)
                                                                AAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCG                              <  SRR4302540.9394739/94‑1 (MQ=60)
                                                                 AATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGA                             >  SRR4302540.5271718/1‑94 (MQ=60)
                                                                 AATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGA                             <  SRR4302540.1062250/94‑1 (MQ=60)
                                                                  ATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGAT                            >  SRR4302540.822898/1‑94 (MQ=60)
                                                                  ATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGAT                            <  SRR4302540.2651496/94‑1 (MQ=60)
                                                                  ATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGAT                            <  SRR4302540.739109/94‑1 (MQ=60)
                                                                  ATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGAT                            >  SRR4302540.7396403/1‑94 (MQ=60)
                                                                  ATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGAT                            >  SRR4302540.6195275/1‑94 (MQ=60)
                                                                  ATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGAT                            <  SRR4302540.3230292/94‑1 (MQ=60)
                                                                   TTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATG                           <  SRR4302540.2917605/94‑1 (MQ=60)
                                                                    TACAACTCACCGTTACTCAGCAACCCGGTCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGA                          <  SRR4302540.9291610/94‑1 (MQ=60)
                                                                    TACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGA                          <  SRR4302540.1937337/94‑1 (MQ=60)
                                                                    TACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGA                          <  SRR4302540.10012887/94‑1 (MQ=60)
                                                                    TACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGA                          <  SRR4302540.6670007/94‑1 (MQ=60)
                                                                    TACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGA                          <  SRR4302540.434208/94‑1 (MQ=60)
                                                                     TCAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAG                         <  SRR4302540.6974830/94‑1 (MQ=60)
                                                                     ACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAG                         >  SRR4302540.3434730/1‑94 (MQ=60)
                                                                     ACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAG                         <  SRR4302540.2465090/94‑1 (MQ=60)
                                                                      CAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGC                        <  SRR4302540.3563933/94‑1 (MQ=60)
                                                                       AACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCA                       <  SRR4302540.5618850/94‑1 (MQ=60)
                                                                       AACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCA                       <  SRR4302540.7167765/94‑1 (MQ=60)
                                                                        ATTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAA                      <  SRR4302540.9142976/94‑1 (MQ=60)
                                                                        ACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAA                      <  SRR4302540.5564549/94‑1 (MQ=60)
                                                                         CTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAAT                     <  SRR4302540.5326871/94‑1 (MQ=60)
                                                                         CTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAAT                     >  SRR4302540.3987465/1‑94 (MQ=60)
                                                                          TCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATT                    >  SRR4302540.7163613/1‑94 (MQ=60)
                                                                          TCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATT                    <  SRR4302540.8209142/94‑1 (MQ=60)
                                                                           CACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTC                   <  SRR4302540.4662879/94‑1 (MQ=60)
                                                                            ACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCC                  >  SRR4302540.3270014/1‑94 (MQ=60)
                                                                             CCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCA                 <  SRR4302540.4236155/94‑1 (MQ=60)
                                                                             CCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCA                 <  SRR4302540.2432062/94‑1 (MQ=60)
                                                                             CCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCA                 >  SRR4302540.2561625/1‑94 (MQ=60)
                                                                             CCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCA                 >  SRR4302540.2561627/1‑94 (MQ=60)
                                                                              CGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCAG                <  SRR4302540.8590043/94‑1 (MQ=60)
                                                                              CGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCAG                <  SRR4302540.2804062/94‑1 (MQ=60)
                                                                               GTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCAGG               >  SRR4302540.4408955/1‑94 (MQ=60)
                                                                               GTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCAGG               >  SRR4302540.3196110/1‑94 (MQ=60)
                                                                               GTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCAGG               <  SRR4302540.3005139/94‑1 (MQ=60)
                                                                               GTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCAGG               <  SRR4302540.8262571/94‑1 (MQ=60)
                                                                               GTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCAGG               >  SRR4302540.8213415/1‑94 (MQ=60)
                                                                                TTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCAGGC              <  SRR4302540.1321880/94‑1 (MQ=60)
                                                                                TTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCAGGC              >  SRR4302540.7607095/1‑94 (MQ=60)
                                                                                TTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCAGGC              <  SRR4302540.207619/94‑1 (MQ=60)
                                                                                 TACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCAGGCT             <  SRR4302540.5664132/94‑1 (MQ=60)
                                                                                 TACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCAGGCT             >  SRR4302540.4358181/1‑94 (MQ=60)
                                                                                 TACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCAGGCT             >  SRR4302540.9529676/1‑94 (MQ=60)
                                                                                  ACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCAGGCTG            <  SRR4302540.5485501/94‑1 (MQ=60)
                                                                                   CTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCAGGCTGG           >  SRR4302540.2162487/1‑94 (MQ=60)
                                                                                    TCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCAGGCTGGA          <  SRR4302540.9150785/94‑1 (MQ=60)
                                                                                    TCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCAGGCTGGA          >  SRR4302540.6678804/1‑94 (MQ=60)
                                                                                     CAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCAGGCTGGAT         <  SRR4302540.834657/94‑1 (MQ=60)
                                                                                     CAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCAGGCTGGAT         >  SRR4302540.123116/1‑94 (MQ=60)
                                                                                      AGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCAGGCTGGATT        <  SRR4302540.400089/94‑1 (MQ=60)
                                                                                       GCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCACACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCAGGCTGGATTA       >  SRR4302540.5272061/1‑94 (MQ=60)
                                                                                        CAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCAGGCTGGATTAA      <  SRR4302540.3984163/94‑1 (MQ=60)
                                                                                        CAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCAGGCTGGATTAA      <  SRR4302540.7438442/94‑1 (MQ=60)
                                                                                         AACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCAGGCTGGATTAAA     >  SRR4302540.3635480/1‑94 (MQ=60)
                                                                                          ACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCAGGCTGGATTAAAT    <  SRR4302540.7869920/94‑1 (MQ=60)
                                                                                           CCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCAGGCTGGATTAAATA   >  SRR4302540.5009935/1‑94 (MQ=60)
                                                                                           CCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCAGGCTGGATTAAATA   <  SRR4302540.2545598/94‑1 (MQ=60)
                                                                                           CCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCAGGCTGGATTAAATA   <  SRR4302540.7308599/94‑1 (MQ=60)
                                                                                            CCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCAGGCTGGATTAAATAC  <  SRR4302540.1634982/94‑1 (MQ=60)
                                                                                            CCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCAGGCTGGATTAAATAC  >  SRR4302540.8253079/1‑94 (MQ=60)
                                                                                            |                                                                                             
CGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACTCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCAGGCTGGATTAAATAC  >  NC_000913/4544182‑4544367

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑