Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	1548	369.5	20095359	96.9%	19472402	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,546,975	T→C	V200A (GTG→GCG)	fimH →	minor fimbrial subunit

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,546,975	0	T	C	93.8%	1207.7 / 40.5	423	V200A (GTG→GCG)	fimH	minor fimbrial subunit
Reads supporting (aligned to +/- strand): ref base T (16/10); new base C (224/173); total (240/183)
Fisher's exact test for biased strand distribution p-value = 6.86e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.90e-01

Only 100 of 440 total aligned reads displayed.

CGCCAATAATGATGTGGTGGTGCCTACTGGCGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGTGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGCACAACCGCAGATGCGGGCAACTCGATTT  >  NC_000913/4546886‑4547064

 gCCAATAATGATGTGGTGGTGCCTACTGGCGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCa                                                                                       >  1:7859584/1‑93 (MQ=255)

  ccAATAATGATGTGGTGGTGCCTACTGGCGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCaa                                                                                      <  1:476377/93‑1 (MQ=255)

   cAATAATGATGTGGTGGTGCCTACTGGCGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAAt                                                                                     <  2:541355/93‑1 (MQ=255)

   cAATAATGAGGTGGTGGTGCCTACTGCCGGCTGAGAAGTTTCTGCCCGTGATGTCAGCGTTACGCTGCCGGAGTAACCGTGTTCAgcgcacat                                                                                     >  2:1856173/1‑89 (MQ=255)

    aataatGATGTGGTGGTGCCTACTGGCGGCTGCGCTGTTTCTGCTCGTGATGTCACCGTTACCCTGCCGGACTACCCCGTTTCAGCGCAAAtt                                                                                    >  1:9859381/1‑93 (MQ=255)

    aataatGATGTGGTGGTGCCTACTGGCGGCTGCGATGTTTCTGCTCGTGAAGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAAtt                                                                                    >  1:5353133/1‑93 (MQ=255)

     ataatGATGTGGTGGTGCCTACTGGCGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTc                                                                                   <  1:1011241/93‑1 (MQ=255)

     ataatGATGTGGTGGTGCCTACTGGCGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTc                                                                                   >  2:813835/1‑93 (MQ=255)

      taatGATGTGGTGGTGCCTACTGGCGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTcc                                                                                  >  1:8127204/1‑93 (MQ=255)

        atgatgTGGTGGTGCCTACTGGCGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCctc                                                                                >  2:7396517/1‑93 (MQ=255)

         tgatgTGGTGGTGCCTACTGGCGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCctct                                                                               <  2:6649738/93‑1 (MQ=255)

         tgatgTGGTGGTGCCTACTGGCGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCctct                                                                               >  1:4467566/1‑93 (MQ=255)

           atgTGGTGGTGCCTACTGGCGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTCCTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTa                                                                             <  2:9657506/93‑1 (MQ=255)

               ggtggtgCCTACTGGCGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGt                                                                         >  1:7170620/1‑93 (MQ=255)

                 tggtgCCTACTGGCGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGttt                                                                       <  1:2578986/93‑1 (MQ=255)

                 tggtgCCTACTGGCGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGttt                                                                       >  2:8676725/1‑93 (MQ=255)

                  ggtgCCTACTGGCGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTa                                                                      <  2:2659499/93‑1 (MQ=255)

                     gCCTACTGGCGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATtg                                                                   >  1:1081090/1‑93 (MQ=255)

                     gCCTACTGGCGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATtg                                                                   <  2:4904881/93‑1 (MQ=255)

                       cTACTGGCGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATtgtg                                                                 >  2:1722766/1‑93 (MQ=255)

                        tACTGGCGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGc                                                                <  2:4629355/93‑1 (MQ=255)

                         aCTGGCGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCg                                                               >  1:3597445/1‑93 (MQ=255)

                          cTGGCGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGa                                                              >  1:6235583/1‑93 (MQ=255)

                          cTGGCGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGa                                                              >  2:5274707/1‑93 (MQ=255)

                           tGGCGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGaa                                                             >  1:8906072/1‑93 (MQ=255)

                           tGGCGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGaa                                                             <  2:4101404/93‑1 (MQ=255)

                           tGGCGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGaa                                                             >  1:10012426/1‑93 (MQ=255)

                            ggcggcTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGaaa                                                            <  1:2292402/93‑1 (MQ=255)

                            ggcggcTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGaaa                                                            >  2:8895902/1‑93 (MQ=255)

                               ggcTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGc                                                         <  1:5086682/93‑1 (MQ=255)

                               ggcTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGc                                                         >  1:9066274/1‑93 (MQ=255)

                                gcTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGcc                                                        >  1:3177692/1‑93 (MQ=255)

                                gcTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGcc                                                        >  2:485347/1‑93 (MQ=255)

                                gcTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGcc                                                        <  1:2611737/93‑1 (MQ=255)

                                gcTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGcc                                                        >  1:5129051/1‑93 (MQ=255)

                                 cTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCa                                                       <  2:9018977/93‑1 (MQ=255)

                                 cTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAACCCa                                                       >  1:3076845/1‑93 (MQ=255)

                                  tGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTCCCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCaa                                                      <  1:7432851/93‑1 (MQ=255)

                                  tGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCaa                                                      >  1:6890750/1‑93 (MQ=255)

                                  tGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCaa                                                      >  2:374108/1‑93 (MQ=255)

                                  tGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCaa                                                      >  1:8015102/1‑93 (MQ=255)

                                     gATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAAc                                                   >  2:8003370/1‑93 (MQ=255)

                                     gATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAAc                                                   <  2:8478664/93‑1 (MQ=255)

                                     gATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAAc                                                   <  2:4442828/93‑1 (MQ=255)

                                     gATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAAc                                                   >  2:1184110/1‑93 (MQ=255)

                                     gATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAAc                                                   >  1:3486121/1‑93 (MQ=255)

                                      aTGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAAcc                                                  >  1:5724658/1‑93 (MQ=255)

                                      aTGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAAcc                                                  >  2:3081910/1‑93 (MQ=255)

                                       tGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGTGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCt                                                 <  1:9639720/93‑1 (MQ=255)

                                       tGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCt                                                 >  2:3862487/1‑93 (MQ=255)

                                       tGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCt                                                 >  2:2851173/1‑93 (MQ=255)

                                       tGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCt                                                 <  2:1031124/93‑1 (MQ=255)

                                        gTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTg                                                >  1:5529368/1‑93 (MQ=255)

                                          ttCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTggg                                              <  2:2255546/93‑1 (MQ=255)

                                           tCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTgggg                                             <  2:2506893/93‑1 (MQ=255)

                                           tCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTgggg                                             >  2:5701848/1‑93 (MQ=255)

                                            cTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGt                                            <  2:1454685/93‑1 (MQ=255)

                                             tGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTa                                           <  1:24014/93‑1 (MQ=255)

                                                    gATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCCAAACCTGGGGTATTACctc                                    >  2:7655297/1‑93 (MQ=255)

                                                     aTGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCATACCGTTTATTGTGCGAAAAGCCAAAACCTGGGCTATTACctct                                   >  1:8401297/1‑93 (MQ=255)

                                                      tGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCtctc                                  <  1:9917504/93‑1 (MQ=255)

                                                       gTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTcc                                 <  2:8290067/93‑1 (MQ=255)

                                                          aCCGTTACTCTGCCGGACTACCCTGGTTCAGTGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGc                              >  1:2213706/1‑93 (MQ=255)

                                                          aCCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGc                              >  1:4169076/1‑93 (MQ=255)

                                                           ccGTTACTCTGCCGGACTACCCTGGTTCAGTGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGca                             >  1:3987633/1‑93 (MQ=255)

                                                           ccGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGca                             <  2:3976450/93‑1 (MQ=255)

                                                            cGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGcac                            <  2:2755874/93‑1 (MQ=255)

                                                            cGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGcac                            <  1:1184602/93‑1 (MQ=255)

                                                             gTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGccca                           >  2:6687894/1‑93 (MQ=255)

                                                               tACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGCACAAc                         >  2:9109761/1‑93 (MQ=255)

                                                                aCTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGCACAAcc                        >  1:7661284/1‑93 (MQ=255)

                                                                aCTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGCACAAcc                        >  2:9469666/1‑93 (MQ=255)

                                                                aCTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGCACAAcc                        >  1:8588371/1‑93 (MQ=255)

                                                                 ctctGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGCACAACCg                       >  1:9482593/1‑93 (MQ=255)

                                                                  tctGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGCACAACCGc                      >  1:6531005/1‑93 (MQ=255)

                                                                   ctGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGCACAACCGCa                     <  2:5898567/93‑1 (MQ=255)

                                                                   ctGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGCACAACCGCa                     <  1:32803/93‑1 (MQ=255)

                                                                   ctGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGCACAACCGCa                     <  2:4220642/93‑1 (MQ=255)

                                                                    tGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGAATTACCTCTCCGGCACAACCGCAg                    >  2:7499579/1‑93 (MQ=255)

                                                                     gCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGCACAACCGCAGa                   <  1:9825244/93‑1 (MQ=255)

                                                                     gCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGCACAACCGCAGa                   <  2:2409328/93‑1 (MQ=255)

                                                                     gCCGGACTACCCTGGTGCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGCACAACCGCAGa                   <  2:3237854/93‑1 (MQ=255)

                                                                      ccGGGCTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAACACCTGGGGTATTACCTCTCCGGCACAACCGCAGAt                  <  1:1790965/93‑1 (MQ=255)

                                                                      ccGGACTGCCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGCACAACCGCAGAt                  <  2:7251242/93‑1 (MQ=255)

                                                                      ccGGACTACACTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGCACAACCGCAGAt                  <  2:9279015/93‑1 (MQ=255)

                                                                        ggACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGCACAACCGCAGATGc                <  1:207081/93‑1 (MQ=255)

                                                                          aCTACCCTGGTTCAGTGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGCACAACCGCAGATGCgg              >  2:6353528/1‑93 (MQ=255)

                                                                          aCTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGCATTACCTCTCCGGCACAACCGCAGATGCgg              >  2:8775817/1‑93 (MQ=255)

                                                                           cttcccTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGCACAACCGCAGATGCggg             <  2:3433946/90‑1 (MQ=255)

                                                                            tACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGCACAACCGCAGATGCGGGc            >  2:4501637/1‑93 (MQ=255)

                                                                             aCCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGCACAACCGCAGATGCGGGCa           >  2:7141766/1‑93 (MQ=255)

                                                                             aCCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGCACAACCGCAGATGCGGGCa           >  1:5843081/1‑93 (MQ=255)

                                                                              cccTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGCACAACCGCAGATGCGGGCaa          <  1:5271859/93‑1 (MQ=255)

                                                                                cTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGCACAACCGCAGATGCGGGCAACt        >  1:3751283/1‑93 (MQ=255)

                                                                                 tGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGTTATTACCTCTCCGGCACAACCGCAGATGCGGGCAACTc       <  1:1362194/93‑1 (MQ=255)

                                                                                 tGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGCACAACCGCAGATGCGGGCAACTc       <  1:8752425/93‑1 (MQ=255)

                                                                                 tGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGCACAACCGCAGATGCGGGCAACTc       >  1:6394927/1‑93 (MQ=255)

                                                                                 tGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGCACAACCGCAGATGCGGGCAACTc       <  2:6111743/93‑1 (MQ=255)

                                                                                    ttCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGCACAACCGCAGATGCGGGCAACTCGAt    >  1:4644133/1‑93 (MQ=255)

                                                                                      cAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGCACAACCGCAGATGCGGGCAACTCGAttt  >  2:3627077/1‑93 (MQ=255)

CGCCAATAATGATGTGGTGGTGCCTACTGGCGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGTGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGCACAACCGCAGATGCGGGCAACTCGATTT  >  NC_000913/4546886‑4547064

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 28 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output Only 200 of 226 total aligned reads displayed.

TTTACGCCAATAATGATGTGGTGGTGCCTACTGGCGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGTGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGCACAACCGCAGATGCGGGCAACTCGATTTTCAC  >  NC_000913/4546882‑4547068

TTTACGCCAATAATGATGTGGTGGTGCCTACTGGCGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGC                                                                                               >  SRR4302540.9203044/1‑94 (MQ=60)

TTTACGCCAATAATGATGTGGTGGTGCCTACTGGCGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGC                                                                                               >  SRR4302540.2951158/1‑94 (MQ=60)

TTTACGCCAATAATGATGTGGTGGGGCCTACTGGCGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGG                                                                                               >  SRR4302540.2112970/1‑94 (MQ=60)

    CGCCAATAATGATGTGGTGGTGCCTACTGGCGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTCCCCTGGTTCAGAGCCA                                                                                           >  SRR4302540.4904899/1‑94 (MQ=60)

    CGCCAATAATGATGTGGTGGTGCCTACTGGCGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCA                                                                                           >  SRR4302540.7951421/1‑94 (MQ=60)

    CGCCAATAATGATGTGGTGGTGCCTACTGGCGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCA                                                                                           >  SRR4302540.3458025/1‑94 (MQ=60)

    CGCCAATAATGATGTGGTGGTGCCTACTGGCGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCA                                                                                           >  SRR4302540.4904900/1‑94 (MQ=60)

      CCAATAATGATGTGGTGGTGCCTACTGGCGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAAT                                                                                         <  SRR4302540.770444/94‑1 (MQ=60)

      CCAATAATGATGTGGTGGTGCCTACTGGCGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAAT                                                                                         >  SRR4302540.3646601/1‑94 (MQ=60)

      CCAATAATGATGTGGTGGTGCCTACTGGCGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAAT                                                                                         <  SRR4302540.3394264/94‑1 (MQ=60)

      CCAATAATGATGTGGTGGTGCCTACTGGCGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAAT                                                                                         <  SRR4302540.481477/94‑1 (MQ=60)

       CAATAATGATGTGGTGGTGCCTACTGGCGGCTGCGCTGTTTCTGCTCGTGATGTCACCGTTACCCTGCCGGACTACCCCGTTTCAGCGCAAATT                                                                                        >  SRR4302540.9974585/1‑94 (MQ=60)

       CAATAATGATGTGGTGGTGCCTACTGGCGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGTGCCAATT                                                                                        >  SRR4302540.910503/1‑94 (MQ=60)

       CAATAATGATGTGGTGGTGCCTACTGGCGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATT                                                                                        <  SRR4302540.1852427/94‑1 (MQ=60)

       CAATAATGATGTGGTGGTGCCTACTGGCGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATT                                                                                        >  SRR4302540.9974584/1‑94 (MQ=60)

       CAATAATGATGTGGTGGTGCCTACTGGCGGCTGCGATGTTTCTGCTCGTGAAGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATT                                                                                        >  SRR4302540.5411907/1‑94 (MQ=60)

        AATAATGATGTGGTGGTGCCTACTGGCGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTC                                                                                       >  SRR4302540.1060778/1‑94 (MQ=60)

         ATAATGATGTGGTGGTGCCTACTGGCGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCC                                                                                      <  SRR4302540.1021494/94‑1 (MQ=60)

         ATAATGATGTGGTGGTGCCTACTGGCGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCC                                                                                      >  SRR4302540.9967969/1‑94 (MQ=60)

         ATAATGATGTGGTGGTGCCTACTGGCGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCC                                                                                      >  SRR4302540.8221535/1‑94 (MQ=60)

          TAATGATGTGGTGGTGCCTACTGGCGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCT                                                                                     <  SRR4302540.3204388/94‑1 (MQ=60)

          TAATGATGTGGTGGTGCCTACTGGCGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCT                                                                                     <  SRR4302540.4670976/94‑1 (MQ=60)

           AATGATGTGGTGGTGCCTACTGGCGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTC                                                                                    >  SRR4302540.1046007/1‑94 (MQ=60)

            ATGATGTGGTGGTGCCTACTGGCGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCT                                                                                   >  SRR4302540.4516003/1‑94 (MQ=60)

            ATGATGTGGTGGTGCCTACTGGCGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCT                                                                                   >  SRR4302540.5893283/1‑94 (MQ=60)

             TGATGTGGTGGTGCCTACTGGCGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTT                                                                                  <  SRR4302540.2240588/94‑1 (MQ=60)

              GATGTGGTGGTGCCTACTGGCGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTC                                                                                 >  SRR4302540.3212639/1‑94 (MQ=60)

               GTGTGGTGGTGCCTACTGGCGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTAC                                                                                <  SRR4302540.2556784/94‑1 (MQ=60)

               ATGTGGTGGTGCCTACTGGCGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTAC                                                                                <  SRR4302540.3306305/94‑1 (MQ=60)

               ATGTGGTGGTGCCTACTGGCGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTAC                                                                                >  SRR4302540.2549265/1‑94 (MQ=60)

                 GTGGTGGTGCCTACTGGCGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCG                                                                              <  SRR4302540.113313/94‑1 (MQ=60)

                 GTGGTGGTGCCTACTGGCGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCG                                                                              >  SRR4302540.9371557/1‑94 (MQ=60)

                  TGGTGGTGCCTACTGGCGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGT                                                                             >  SRR4302540.7250552/1‑94 (MQ=60)

                    GTGGTGCCTACTGGCGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTT                                                                           >  SRR4302540.315789/1‑94 (MQ=60)

                     TGGTGCCTACTGGCGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTA                                                                          <  SRR4302540.2606794/94‑1 (MQ=60)

                      GGTGCCTACTGGCGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTAT                                                                         >  SRR4302540.2109696/1‑94 (MQ=60)

                       GTGCCTACTGGCGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATT                                                                        <  SRR4302540.8690451/94‑1 (MQ=60)

                       GTGCCTACTGGCGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATT                                                                        >  SRR4302540.1334443/1‑94 (MQ=60)

                       GTGCCTACTGGCGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATT                                                                        <  SRR4302540.7478428/94‑1 (MQ=60)

                       GTGCCTACTGGCGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATT                                                                        >  SRR4302540.1334441/1‑94 (MQ=60)

                        TGCCTACTGGCGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTG                                                                       >  SRR4302540.1092155/1‑94 (MQ=60)

                         GCCTACTGGCGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGT                                                                      <  SRR4302540.239806/94‑1 (MQ=60)

                          CCTACTGGCGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTG                                                                     >  SRR4302540.519901/1‑94 (MQ=60)

                          CCTACTGGCGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTG                                                                     >  SRR4302540.8521820/1‑94 (MQ=60)

                           CTACTGGCGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGTGCCAATTCCTCTTACCGTTTATTGTGC                                                                    >  SRR4302540.4951590/1‑94 (MQ=60)

                           CTACTGGCGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGC                                                                    >  SRR4302540.4752593/1‑94 (MQ=60)

                           CTACTGGCGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGC                                                                    <  SRR4302540.7022094/94‑1 (MQ=60)

                           CTACTGGCGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGC                                                                    >  SRR4302540.8221686/1‑94 (MQ=60)

                           CTACTGGCAGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGC                                                                    >  SRR4302540.3186134/1‑94 (MQ=60)

                            TACTGGCGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCG                                                                   >  SRR4302540.3636748/1‑94 (MQ=60)

                            TACTGGCGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCG                                                                   >  SRR4302540.2618139/1‑94 (MQ=60)

                             ACTGGCGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGA                                                                  >  SRR4302540.1141967/1‑94 (MQ=60)

                             ACTGGCGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGA                                                                  >  SRR4302540.6304936/1‑94 (MQ=60)

                             ACTGGCGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGA                                                                  >  SRR4302540.8864102/1‑94 (MQ=60)

                              CTGGCGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCACTTCCGCTTACCGTTTATTGTTCGAA                                                                 >  SRR4302540.567863/1‑94 (MQ=60)

                              CTGGCGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAA                                                                 >  SRR4302540.567865/1‑94 (MQ=60)

                              CTGGCGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAA                                                                 >  SRR4302540.10129003/1‑94 (MQ=60)

                              CTGGCGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAA                                                                 >  SRR4302540.3819983/1‑94 (MQ=60)

                              CTGGCGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAA                                                                 >  SRR4302540.9009191/1‑94 (MQ=60)

                                 GCGGCTGCGGTGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCCATTCCTCTTACCGTTTATTGTGCGAACAG                                                              >  SRR4302540.8304322/1‑94 (MQ=60)

                                 GCGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAG                                                              <  SRR4302540.8150942/94‑1 (MQ=60)

                                 GCGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAG                                                              <  SRR4302540.499210/94‑1 (MQ=60)

                                 GCGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAG                                                              >  SRR4302540.8304321/1‑94 (MQ=60)

                                 GCGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAG                                                              >  SRR4302540.4359655/1‑94 (MQ=60)

                                 GCGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAG                                                              <  SRR4302540.5923876/94‑1 (MQ=60)

                                  CGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGC                                                             >  SRR4302540.9175135/1‑94 (MQ=60)

                                   GGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCC                                                            <  SRR4302540.7429769/94‑1 (MQ=60)

                                   GGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCC                                                            <  SRR4302540.5141677/94‑1 (MQ=60)

                                   GGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCC                                                            >  SRR4302540.371762/1‑94 (MQ=60)

                                   GGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCC                                                            >  SRR4302540.5749964/1‑94 (MQ=60)

                                   GGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCC                                                            >  SRR4302540.5184604/1‑94 (MQ=60)

                                   GGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCC                                                            >  SRR4302540.3212231/1‑94 (MQ=60)

                                   GGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCC                                                            >  SRR4302540.226060/1‑94 (MQ=60)

                                    GCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCA                                                           <  SRR4302540.2639933/94‑1 (MQ=60)

                                    GCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAACCCA                                                           >  SRR4302540.3110602/1‑94 (MQ=60)

                                     CTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAA                                                          >  SRR4302540.6967173/1‑94 (MQ=60)

                                     CTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAA                                                          >  SRR4302540.2217958/1‑94 (MQ=60)

                                     CTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAA                                                          >  SRR4302540.8108328/1‑94 (MQ=60)

                                     CTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGGGCGAAAAGCCAA                                                          >  SRR4302540.5905576/1‑94 (MQ=60)

                                      TGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTCCCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAA                                                         <  SRR4302540.7515658/94‑1 (MQ=60)

                                      TGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAA                                                         >  SRR4302540.99571/1‑94 (MQ=60)

                                      TGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAA                                                         >  SRR4302540.99570/1‑94 (MQ=60)

                                      TGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAA                                                         >  SRR4302540.5504815/1‑94 (MQ=60)

                                      TGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAA                                                         >  SRR4302540.4283032/1‑94 (MQ=60)

                                       GCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAA                                                        >  SRR4302540.2611949/1‑94 (MQ=60)

                                        CGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGTGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAAC                                                       >  SRR4302540.8858458/1‑94 (MQ=60)

                                        CGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAAC                                                       <  SRR4302540.10071001/94‑1 (MQ=60)

                                        CGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAAC                                                       >  SRR4302540.3524086/1‑94 (MQ=60)

                                        CGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAAC                                                       >  SRR4302540.3189664/1‑94 (MQ=60)

                                         GATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACC                                                      >  SRR4302540.5787681/1‑94 (MQ=60)

                                         GATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACC                                                      >  SRR4302540.1594034/1‑94 (MQ=60)

                                          ATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGTGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCT                                                     >  SRR4302540.5879693/1‑94 (MQ=60)

                                          ATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAACACCT                                                     >  SRR4302540.6940328/1‑94 (MQ=60)

                                           TGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGTGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTG                                                    <  SRR4302540.9753280/94‑1 (MQ=60)

                                           TGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTG                                                    <  SRR4302540.6788968/94‑1 (MQ=60)

                                            GTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGTGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGG                                                   <  SRR4302540.3553738/94‑1 (MQ=60)

                                            GTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGG                                                   >  SRR4302540.8704200/1‑94 (MQ=60)

                                            GTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGG                                                   <  SRR4302540.6587886/94‑1 (MQ=60)

                                            GTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGG                                                   >  SRR4302540.8026423/1‑94 (MQ=60)

                                              TTCTGCTCGTGATGTCACCGTTACTCTGGCGTACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGG                                                 <  SRR4302540.4685940/94‑1 (MQ=60)

                                               TCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGT                                                >  SRR4302540.5146509/1‑94 (MQ=60)

                                               TCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGT                                                >  SRR4302540.4075996/1‑94 (MQ=60)

                                               TCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGT                                                <  SRR4302540.4228451/94‑1 (MQ=60)

                                                 TGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGTGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTAT                                              >  SRR4302540.2328839/1‑94 (MQ=60)

                                                 TGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTAT                                              >  SRR4302540.4052306/1‑94 (MQ=60)

                                                 TGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTAT                                              <  SRR4302540.24278/94‑1 (MQ=60)

                                                 TGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTAT                                              <  SRR4302540.170403/94‑1 (MQ=60)

                                                  GCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATT                                             >  SRR4302540.7970930/1‑94 (MQ=60)

                                                   CTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGTGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTA                                            <  SRR4302540.9763520/94‑1 (MQ=60)

                                                   CTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTA                                            >  SRR4302540.1999790/1‑94 (MQ=60)

                                                    TCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTAC                                           <  SRR4302540.9242860/94‑1 (MQ=60)

                                                     CGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACC                                          >  SRR4302540.5282449/1‑94 (MQ=60)

                                                     CGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACC                                          <  SRR4302540.5407123/94‑1 (MQ=60)

                                                      GTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCT                                         <  SRR4302540.7750868/94‑1 (MQ=60)

                                                        GATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCT                                       >  SRR4302540.8498802/1‑94 (MQ=60)

                                                        GATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCATACCGTTTATTGTGCGAAAAGCCAAAACCTGGGCTATTACCTCT                                       >  SRR4302540.8498803/1‑94 (MQ=60)

                                                         ATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTC                                      >  SRR4302540.5146432/1‑94 (MQ=60)

                                                          TGTCCCCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCC                                     <  SRR4302540.6334151/94‑1 (MQ=60)

                                                          TGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCC                                     <  SRR4302540.10033323/94‑1 (MQ=60)

                                                          TGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCC                                     <  SRR4302540.10033324/94‑1 (MQ=60)

                                                          TGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCC                                     <  SRR4302540.949929/94‑1 (MQ=60)

                                                           GTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAACAGCCAACACCTGGGGTATTACCTCTCCG                                    >  SRR4302540.1121218/1‑94 (MQ=60)

                                                           GTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCG                                    >  SRR4302540.990037/1‑94 (MQ=60)

                                                           GTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCG                                    >  SRR4302540.9745727/1‑94 (MQ=60)

                                                             CACCGTTACTCTGCCGGACTACCCTGGTTCAGTGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGC                                  >  SRR4302540.2237602/1‑94 (MQ=60)

                                                             CACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGC                                  <  SRR4302540.36151/94‑1 (MQ=60)

                                                             CACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGC                                  >  SRR4302540.4004844/1‑94 (MQ=60)

                                                             CACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGC                                  >  SRR4302540.4214291/1‑94 (MQ=60)

                                                              ACCGTTACTCTGCCGGACTACCCTGGTTCAGTGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGCA                                 >  SRR4302540.4030564/1‑94 (MQ=60)

                                                              ACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGGATTACCTCTCCGGCC                                 >  SRR4302540.8790526/1‑94 (MQ=60)

                                                               CCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGCAC                                >  SRR4302540.2283956/1‑94 (MQ=60)

                                                               CCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGCAC                                >  SRR4302540.545092/1‑94 (MQ=60)

                                                                CGTTACTCTGGCGGACTACCCGGGTTCAGCCGCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGCACA                               <  SRR4302540.3416291/94‑1 (MQ=60)

                                                                CGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGCACA                               <  SRR4302540.1196828/94‑1 (MQ=60)

                                                                CGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGCACA                               >  SRR4302540.7158369/1‑94 (MQ=60)

                                                                CGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGCACA                               >  SRR4302540.803515/1‑94 (MQ=60)

                                                                CGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGCACA                               >  SRR4302540.2451436/1‑94 (MQ=60)

                                                                CGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGCACA                               >  SRR4302540.9146637/1‑94 (MQ=60)

                                                                CGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGCACA                               >  SRR4302540.6272555/1‑94 (MQ=60)

                                                                CGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGCACA                               <  SRR4302540.3774016/94‑1 (MQ=60)

                                                                 GTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGCACAA                              <  SRR4302540.65765/94‑1 (MQ=60)

                                                                 GTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGCACAA                              >  SRR4302540.10140054/1‑94 (MQ=60)

                                                                  tgtCTCTGCCGGACTCCCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGCACAAC                             <  SRR4302540.9719566/91‑1 (MQ=60)

                                                                  TTACTCTGCCGGACTACCCTGGTTCAGTGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGCACAAC                             >  SRR4302540.4810511/1‑94 (MQ=60)

                                                                  TTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCG‑TTATTGGACGGAAAGGCAAAACCTGGGGTATTTACTCTCCGGGACAACC                            >  SRR4302540.1576137/1‑94 (MQ=48)

                                                                   TACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGCACAACC                            >  SRR4302540.8134766/1‑94 (MQ=60)

                                                                   TACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGCACAACC                            >  SRR4302540.8688210/1‑94 (MQ=60)

                                                                   TACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGCACAACC                            >  SRR4302540.7747566/1‑94 (MQ=60)

                                                                   TACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGCACAACC                            >  SRR4302540.7747565/1‑94 (MQ=60)

                                                                   TACTCTGCCGGACTACCCTGATTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGCACAACC                            <  SRR4302540.7574495/94‑1 (MQ=60)

                                                                    ACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGCACAACCG                           >  SRR4302540.9595032/1‑94 (MQ=60)

                                                                    ACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGCACAACCG                           >  SRR4302540.4680944/1‑94 (MQ=60)

                                                                     CTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGCACAACCGC                          >  SRR4302540.6603512/1‑94 (MQ=60)

                                                                     CTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGCACAACCGC                          >  SRR4302540.1016614/1‑94 (MQ=60)

                                                                      TCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCTAAAAGCCAAAACCTGGGGTATTACCTCTCCGGCACAACCGCA                         <  SRR4302540.967815/94‑1 (MQ=60)

                                                                      TCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGCACAACCGCA                         <  SRR4302540.3016020/94‑1 (MQ=60)

                                                                       CTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGCACAACCGCAG                        <  SRR4302540.33152/94‑1 (MQ=60)

                                                                       CCGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGCTTATTGTGCGAAAAGCCAAAACCTGGGCTATTACCTCTCCGGCACAACCGCAG                        <  SRR4302540.6563871/94‑1 (MQ=60)

                                                                         TCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGCACAACCGCAGAT                      <  SRR4302540.2652536/94‑1 (MQ=60)

                                                                         GCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGCACAACCGCAGAT                      <  SRR4302540.2006310/94‑1 (MQ=60)

                                                                         GCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGCACAACCGCAGAT                      <  SRR4302540.228626/94‑1 (MQ=60)

                                                                         GCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGCACAACCGCAGAT                      <  SRR4302540.9940189/94‑1 (MQ=60)

                                                                          CCGGGCTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAACACCTGGGGTATTACCTCTCCGGCACAACCGCAGATG                     <  SRR4302540.1810430/94‑1 (MQ=60)

                                                                           CGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGCACAACCGCAGATGC                    >  SRR4302540.10057374/1‑94 (MQ=60)

                                                                           CGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGCACAACCGCAGATGC                    >  SRR4302540.3435834/1‑94 (MQ=60)

                                                                            GGACTCCCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGCACAACCGCAGATGCG                   <  SRR4302540.5276667/94‑1 (MQ=60)

                                                                            GGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAGCCTGGGGTATTACCTCTCCGGCACAACCGCAGATGCG                   <  SRR4302540.8567887/94‑1 (MQ=60)

                                                                            GGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGCACAACCGCAGATGCG                   <  SRR4302540.209110/94‑1 (MQ=60)

                                                                            GGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGCACAACCGCAGATGCG                   >  SRR4302540.4169645/1‑94 (MQ=60)

                                                                            GGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGCACAACCGCAGATGCG                   >  SRR4302540.6347226/1‑94 (MQ=60)

                                                                             gacacCCCTGGTTCAGCGCCAATTCCTCTTACCCTTTATTGTGCTAAAAACCAAAACCTGGGGTAGTCCCTCTCCGGCACAACCGCAGATGCGG                  <  SRR4302540.4827339/89‑1 (MQ=60)

                                                                             GACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGCACAACCGCAGATGCGG                  <  SRR4302540.514609/94‑1 (MQ=60)

                                                                             GACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGCACAACCGCAGATGCGG                  <  SRR4302540.6896171/94‑1 (MQ=60)

                                                                             GACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGCACAACCGCAGATGCGG                  <  SRR4302540.10032847/94‑1 (MQ=60)

                                                                              ACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGCATAACCGCAGATGCGGG                 >  SRR4302540.9051153/1‑94 (MQ=60)

                                                                               CTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGCACAACCGCAGATGCGGGC                >  SRR4302540.5562946/1‑94 (MQ=60)

                                                                                TACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGCACAACCGCAGATGCGGGCA               <  SRR4302540.5690880/94‑1 (MQ=60)

                                                                                TACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGCACAACCGCAGATGCGGGCA               <  SRR4302540.5387652/94‑1 (MQ=60)

                                                                                TACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGCACAACCGCAGATGCGGGCA               >  SRR4302540.2420843/1‑94 (MQ=60)

                                                                                TACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGAATTACCTCTCCGGCACAACCGCAGATGCGGGCA               >  SRR4302540.7140676/1‑94 (MQ=60)

                                                                                 ACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGCACAACCGCAGATGCGGGCAA              <  SRR4302540.7424308/94‑1 (MQ=60)

                                                                                 ACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGCACAACCGCAGATGCGGGCAA              >  SRR4302540.7991359/1‑94 (MQ=60)

                                                                                  CCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGCACAACCGCAGATGCGGGCAAC             <  SRR4302540.5329405/94‑1 (MQ=60)

                                                                                   CCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGCACAACCGCAGATGCGGGCAACT            >  SRR4302540.5395685/1‑94 (MQ=60)

                                                                                   CCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGCACAACCGCAGATGCGGGCAACT            >  SRR4302540.3792209/1‑94 (MQ=60)

                                                                                    CTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGCACAACCGCAGATGCGGGCAACTC           >  SRR4302540.6466108/1‑94 (MQ=60)

                                                                                     TGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGTTATTACCTCTCCGGCACAACCGCAGATGCGGGCAACTCG          <  SRR4302540.1376584/94‑1 (MQ=60)

                                                                                     TGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGCACAACCGCAGATGCGGGCAACTCG          <  SRR4302540.8853967/94‑1 (MQ=60)

                                                                                     TGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGCACAACCGCAGATGCGGGCAACTCG          >  SRR4302540.3931165/1‑94 (MQ=60)

                                                                                      GGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGCACAACCGCAGATGCGGGCAACTCGA         >  SRR4302540.8962637/1‑94 (MQ=60)

                                                                                      GGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGCACAACCGCAGATGCGGGCAACTCGA         >  SRR4302540.7627658/1‑94 (MQ=60)

                                                                                       GTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGCACAACCGCAGATGCGGGCAACTCGAT        >  SRR4302540.1029274/1‑94 (MQ=60)

                                                                                       GTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGCACAACCGCAGATGCGGGCAACTCGAT        <  SRR4302540.6170245/94‑1 (MQ=60)

                                                                                       GTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGCACAACCGCAGATGCGGGCAACTCGAT        >  SRR4302540.4693845/1‑94 (MQ=60)

                                                                                        TTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGCACAACCGCAGATGCGGGCAACTCGATT       >  SRR4302540.10100183/1‑94 (MQ=60)

                                                                                        TTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGCACAACCGCAGATGCGGGCAACTCGATT       <  SRR4302540.1198127/94‑1 (MQ=60)

                                                                                        GTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGCACAACCGCAGATGCGGGCAACTCGATT       <  SRR4302540.2626208/94‑1 (MQ=60)

                                                                                         TCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGCACAACCGCAGATGCGGGCAACTCGATTT      >  SRR4302540.627931/1‑94 (MQ=60)

                                                                                            GCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGCACAACCGCAGATGCGGGCAACTCGATTTTCA   >  SRR4302540.242402/1‑94 (MQ=60)

                                                                                             CGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGCACAACCGCAGATGCGGGCAACTCGATTTTCAC  >  SRR4302540.201371/1‑94 (MQ=60)

TTTACGCCAATAATGATGTGGTGGTGCCTACTGGCGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGTGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGCACAACCGCAGATGCGGGCAACTCGATTTTCAC  >  NC_000913/4546882‑4547068

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`