Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1624	250.6	12620048	98.0%	12367647	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,546,975	T→C	V200A (GTG→GCG)	fimH →	minor fimbrial subunit

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,546,975	0	T	C	100.0%	736.0 / NA	225	V200A (GTG→GCG)	fimH	minor fimbrial subunit
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (131/94); total (131/94)

Only 100 of 236 total aligned reads displayed.

ACGCCAATAATGATGTGGTGGTGCCTACTGGCGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGTGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGCACAACCGCAGATGCGGGCAACTCGATTT  >  NC_000913/4546885‑4547064

aCGCCAATAATGATGTGGTGGTGCCTACTGGCGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAgcgc                                                                                         >  1:3145718/1‑93 (MQ=255)

aCGCCAATAATGATGTGGTGGTGCCTACTGGCGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAgcgc                                                                                         <  2:578529/93‑1 (MQ=255)

aCGCCAATAATGATGTGGTGGTGCCTACTGGCGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAgcgc                                                                                         >  2:2718070/1‑93 (MQ=255)

 cGCCAATAATGATGTGGTGGTGCCTACTGGCGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGcc                                                                                        >  1:4016463/1‑93 (MQ=255)

 cGCCAATAATGATGTGGTGGTGCCTACTGGCGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGcc                                                                                        >  2:2893129/1‑93 (MQ=255)

  gCCAATAATGATGTGGTGGTGCCTACTGGCGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCa                                                                                       <  1:4628317/93‑1 (MQ=255)

  gCCAATAATGATGTGGTGGTGCCTACTGGCGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCa                                                                                       >  1:3734272/1‑93 (MQ=255)

   ccAATAATGATGTGGTGGTGCCTACTGGCGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTCCCCTGGTTCAGCGCCaa                                                                                      <  1:2308522/93‑1 (MQ=255)

    cAATAATGATGTGGTGGTGCCTACTGGCGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAAt                                                                                     <  1:3543875/93‑1 (MQ=255)

    cAATAATGATGTGGTGGTGCCTACTGGCGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAAt                                                                                     <  1:6150812/93‑1 (MQ=255)

    cAATAATGATGTGGTGGTGCCTACTGGCGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAAt                                                                                     <  1:2493514/93‑1 (MQ=255)

     aataatGATGTGGTGGTGCCTACTGGCGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAAtt                                                                                    >  2:654559/1‑93 (MQ=255)

      ataatGATGTGGTGGTGCCTACTGGCGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTc                                                                                   <  2:5673858/93‑1 (MQ=255)

      ataatGATGTGGTGGTGCCTACTGGCGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTc                                                                                   <  2:3546807/93‑1 (MQ=255)

         atgatgTGGTGGTGCCTACTGGCGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCctc                                                                                <  1:538163/93‑1 (MQ=255)

         atgatgTGGTGGTGCCTACTGGCGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCctc                                                                                >  1:74740/1‑93 (MQ=255)

             tgtgGTGGTGCCTACTGGCGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCCATTCCTCtttc                                                                            >  2:3276937/1‑91 (MQ=255)

                 gtggtgCCTACTGGCGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGtt                                                                        >  2:3854723/1‑93 (MQ=255)

                   ggtgCCTACTGGCGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTa                                                                      >  1:391363/1‑93 (MQ=255)

                    gtgCCTACTGGCGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTAt                                                                     <  1:4094992/93‑1 (MQ=255)

                    gtgCCTACTGGCGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTAt                                                                     >  2:709269/1‑93 (MQ=255)

                     tgCCTACTGGCGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTAtt                                                                    <  1:4362041/93‑1 (MQ=255)

                       ccTACTGGCGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATtgt                                                                  <  2:5521635/93‑1 (MQ=255)

                       ccTACTGGCGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATtgt                                                                  <  2:5989435/93‑1 (MQ=255)

                         tACTGGCGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGc                                                                <  1:4721671/93‑1 (MQ=255)

                         tACTGGCGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGc                                                                >  1:1545334/1‑93 (MQ=255)

                         tACTGGCGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGc                                                                >  2:4594574/1‑93 (MQ=255)

                          aCTGGCGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCg                                                               >  1:3291521/1‑93 (MQ=255)

                            tGGCGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGaa                                                             >  2:2059940/1‑93 (MQ=255)

                             ggcggcTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGaaa                                                            <  1:6012367/93‑1 (MQ=255)

                             ggcggcTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGaaa                                                            >  2:2044387/1‑93 (MQ=255)

                             ggcggcTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGaaa                                                            <  2:2374079/93‑1 (MQ=255)

                             ggcggcTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGaaa                                                            >  2:1702764/1‑93 (MQ=255)

                             ggcggcTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGaaa                                                            >  2:2382798/1‑93 (MQ=255)

                              gcggcTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGaaaa                                                           >  2:4289828/1‑93 (MQ=255)

                                 gcTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGcc                                                        <  1:5601468/93‑1 (MQ=255)

                                 gcTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGcc                                                        >  1:1514485/1‑93 (MQ=255)

                                 gcTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGcc                                                        <  2:3667828/93‑1 (MQ=255)

                                   tGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCaa                                                      <  2:5728439/93‑1 (MQ=255)

                                     cGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCaaaa                                                    <  1:1105615/93‑1 (MQ=255)

                                      gATGTTTCTGCTCGTGATGTCCCCGTTACTCTGCCGGACTGCCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAAc                                                   <  2:5374328/93‑1 (MQ=255)

                                      gATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAAc                                                   >  1:5262384/1‑93 (MQ=255)

                                      gATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAAc                                                   >  2:2835713/1‑93 (MQ=255)

                                      gATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAAc                                                   <  1:6289601/93‑1 (MQ=255)

                                       aTGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAAcc                                                  >  1:2653006/1‑93 (MQ=255)

                                        tGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCt                                                 >  1:1339545/1‑93 (MQ=255)

                                        tGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCt                                                 >  1:5113590/1‑93 (MQ=255)

                                         gTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTg                                                >  1:6223803/1‑93 (MQ=255)

                                          tttCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTgg                                               >  1:1952258/1‑93 (MQ=255)

                                           ttCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTggg                                              <  1:2403585/93‑1 (MQ=255)

                                           ttCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTggg                                              <  2:6292973/93‑1 (MQ=255)

                                           ttCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTggg                                              <  1:25603/93‑1 (MQ=255)

                                           ttCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTggg                                              >  2:5397558/1‑93 (MQ=255)

                                            tCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTgggg                                             >  2:1138609/1‑93 (MQ=255)

                                             cTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGt                                            <  2:5079649/93‑1 (MQ=255)

                                              tGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTa                                           >  2:895647/1‑93 (MQ=255)

                                               gCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTAt                                          <  1:2940167/93‑1 (MQ=255)

                                                cTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTAtt                                         <  1:3181143/93‑1 (MQ=255)

                                                 tCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTa                                        <  2:162192/93‑1 (MQ=255)

                                                 tCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTa                                        >  1:4107314/1‑93 (MQ=255)

                                                 tCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTa                                        >  2:2759976/1‑93 (MQ=255)

                                                  cGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTAc                                       <  2:3303311/93‑1 (MQ=255)

                                                   gTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTAcc                                      >  2:3700070/1‑93 (MQ=255)

                                                   gTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTAcc                                      >  1:2207949/1‑93 (MQ=255)

                                                     gATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACctc                                    >  1:3452683/1‑93 (MQ=255)

                                                      aTGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACctct                                   <  2:4738982/93‑1 (MQ=255)

                                                       tGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCtctc                                  <  2:1800018/93‑1 (MQ=255)

                                                        gTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTcc                                 >  2:2800597/1‑93 (MQ=255)

                                                         tCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCg                                >  1:3828804/1‑93 (MQ=255)

                                                            ccGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGca                             >  1:1732461/1‑93 (MQ=255)

                                                             cGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGcac                            <  2:3343723/93‑1 (MQ=255)

                                                              gTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGcaca                           >  1:1455619/1‑93 (MQ=255)

                                                              gTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGcaca                           >  1:1231091/1‑93 (MQ=255)

                                                               ttACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGCACaa                          >  2:3991179/1‑93 (MQ=255)

                                                                tACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGCACAAc                         <  1:2012754/93‑1 (MQ=255)

                                                                tACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGCCACAAc                         <  2:1506728/93‑1 (MQ=255)

                                                                    ctGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGCACAACCGCa                     <  2:1970069/93‑1 (MQ=255)

                                                                    ctGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGCACAACCGCa                     <  2:437320/93‑1 (MQ=255)

                                                                    ctGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGCACAACCGCa                     <  2:5020860/93‑1 (MQ=255)

                                                                      gCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGCACAACCGCAGa                   <  2:605071/93‑1 (MQ=255)

                                                                      gCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGCACAACCGCAGa                   <  1:4935131/93‑1 (MQ=255)

                                                                      gCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGCACAACCGCAGa                   <  1:5283674/93‑1 (MQ=255)

                                                                        cGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGCACAACCGCAGATg                 <  2:4498393/93‑1 (MQ=255)

                                                                         ggACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGCACAACCGCAGATGc                >  1:4392985/1‑93 (MQ=255)

                                                                         ggACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGCACAACCGCAGATGc                >  2:1524425/1‑93 (MQ=255)

                                                                          gACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGCACAACCGCAGATGCg               <  2:1007245/93‑1 (MQ=255)

                                                                          gACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGCACAACCGCAGATGCg               >  1:1806863/1‑93 (MQ=255)

                                                                          gACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGCACAACCGCAGATGCg               >  1:1738790/1‑93 (MQ=255)

                                                                           aCTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGCACAACCGCAGATGCgg              >  2:3444666/1‑93 (MQ=255)

                                                                           aCTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGCACAACCGCAGATGCgg              <  2:880717/93‑1 (MQ=255)

                                                                            cTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGCACAACCGCAGATGCggg             >  1:4862046/1‑93 (MQ=255)

                                                                             tACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGCACAACCGCAGATGCGGGc            >  1:6117690/1‑93 (MQ=255)

                                                                             tACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGCACAACCGCAGATGCGGGc            >  1:424027/1‑93 (MQ=255)

                                                                             tACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGCACAACCGCAGATGCGGGc            >  1:4581813/1‑93 (MQ=255)

                                                                              aCCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGCACAACCGCAGATGCGGGCa           >  2:2539714/1‑93 (MQ=255)

                                                                               cccTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGCACAACCGCAGATGCGGGCaa          >  1:5657528/1‑93 (MQ=255)

                                                                                ccTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGTTATTACCTCTCCGGCACAACCGCAGATGCGGGCAAc         <  1:825104/93‑1 (MQ=255)

                                                                                ccTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGCACAACCGCAGATGCGGGCAAc         >  1:2788191/1‑93 (MQ=255)

                                                                                     ttCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGCACAACCGCAGATGCGGGCAACTCGAt    >  2:5160854/1‑93 (MQ=255)

                                                                                       cAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGCACAACCGCAGATGCGGGCAACTCGAttt  >  1:2875254/1‑93 (MQ=255)

ACGCCAATAATGATGTGGTGGTGCCTACTGGCGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGTGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGCACAACCGCAGATGCGGGCAACTCGATTT  >  NC_000913/4546885‑4547064

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

TACGCCAATAATGATGTGGTGGTGCCTACTGGCGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGTGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGCACAACCGCAGATGCGGGCAACTCGATTTTCAC  >  NC_000913/4546884‑4547068

TACGCCAATAATGATGTGGTGGTGCCTACTGGCGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGC                                                                                             >  SRR4302533.3165060/1‑94 (MQ=60)

 ACGCCAATAATGATGTGGTGGTGCCTACTGGCGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCC                                                                                            >  SRR4302533.4040917/1‑94 (MQ=60)

 ACGCCAATAATGATGTGGTGGTGCCTACTGGCGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTAACCTGGTTCCGCGCC                                                                                            >  SRR4302533.542159/1‑94 (MQ=60)

  CGCCAATAATGATGTGGTGGTGCCTACTGGCGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCA                                                                                           >  SRR4302533.3757177/1‑94 (MQ=60)

   GCCAATAATGATGTGGTGGTGCCTACTGGCGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAA                                                                                          <  SRR4302533.4656366/94‑1 (MQ=60)

    CCAATAATGATGTGGTGGTGCCTACTGGCGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTCCCCTGGTTCAGCGCCAAT                                                                                         <  SRR4302533.2322824/94‑1 (MQ=60)

    CCAATAATGATGTGGTGGTGCCTACTGGCGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAAT                                                                                         >  SRR4302533.1748645/1‑94 (MQ=60)

    CCAATAATGATGTGGTGGTGCCTACTGGCGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAAT                                                                                         <  SRR4302533.2167169/94‑1 (MQ=60)

     CAATAATGATGTGGTGGTGCCTACTGGCGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATT                                                                                        <  SRR4302533.3565714/94‑1 (MQ=60)

     CAATAATGATGTGGTGGTGCCTACTGGCGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATT                                                                                        <  SRR4302533.5231509/94‑1 (MQ=60)

     CAATAATGATGTGGTGGTGCCTACTGGCGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATT                                                                                        >  SRR4302533.2273178/1‑94 (MQ=60)

     CAATAATGATGTGGTGGTGCCTACTGGCGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATT                                                                                        <  SRR4302533.6187833/94‑1 (MQ=60)

     CAATAATGATGTGGTGGTGCCTACTGGCGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATT                                                                                        <  SRR4302533.2508894/94‑1 (MQ=60)

      AATAATGATGTGGTGGTGCCTACTGGCGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTC                                                                                       >  SRR4302533.194200/1‑94 (MQ=60)

      AATAATGATGTGGTGGTGCCTACTGGCGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTC                                                                                       <  SRR4302533.227934/94‑1 (MQ=60)

       ATAATGATGTGGTGGTGCCTACTGGCGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCC                                                                                      >  SRR4302533.933534/1‑94 (MQ=60)

       ATAATGATGTGGTGGTGCCTACTGGCGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCC                                                                                      >  SRR4302533.2696945/1‑94 (MQ=60)

        TAATGATGTGGTGGTGCCTACTGGCGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCACCAATTCCT                                                                                     >  SRR4302533.6333357/1‑94 (MQ=60)

         AATGATGTGGTGGTGCCTACTGGCGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTC                                                                                    >  SRR4302533.75226/1‑94 (MQ=60)

          ATGATGTGGTGGTGCCTACTGGCGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCT                                                                                   <  SRR4302533.541364/94‑1 (MQ=60)

           TGATGTGGTGGTGCCTACTGGCGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTT                                                                                  >  SRR4302533.3074830/1‑94 (MQ=60)

           TGATGTGGTGGTGCCTACTGGCGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTT                                                                                  <  SRR4302533.6030261/94‑1 (MQ=60)

            GATGTGGTGGTGCCTACTGGCGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTC                                                                                 >  SRR4302533.3541092/1‑94 (MQ=60)

            GATGTGGTGGTGCCTACTGGCGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTA                                                                                 >  SRR4302533.771256/1‑94 (MQ=60)

             ATGTGGTGGTGCCTACTGGCGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTAC                                                                                <  SRR4302533.1536999/94‑1 (MQ=60)

             ATGTGGTGGTGCCTACTGGCGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTAC                                                                                >  SRR4302533.3879026/1‑94 (MQ=60)

             ATGTGGTGGTGCCTACTGGCGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTAC                                                                                >  SRR4302533.4598836/1‑94 (MQ=60)

              TGTGGTGGTGCCTACTGGCGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACC                                                                               <  SRR4302533.6081615/94‑1 (MQ=60)

              TGTGGTGGTGCCTACTGGCGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACC                                                                               <  SRR4302533.2883103/94‑1 (MQ=60)

               GTGGTGGTGCCTACTGGCGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCG                                                                              <  SRR4302533.3037174/94‑1 (MQ=60)

                 GGTGGTGCCTACTGGCGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTT                                                                            <  SRR4302533.6239977/94‑1 (MQ=60)

                 GGTGGTGCCTACTGGCGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTT                                                                            <  SRR4302533.4728426/94‑1 (MQ=60)

                   TGGTGCCTACTGGCGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTA                                                                          >  SRR4302533.393734/1‑94 (MQ=60)

                     GTGCCTACTGGCGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATT                                                                        <  SRR4302533.4119923/94‑1 (MQ=60)

                      TGCCTACTGGCGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTG                                                                       <  SRR4302533.4388371/94‑1 (MQ=60)

                       GCCTACTGGCGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGT                                                                      >  SRR4302533.117041/1‑94 (MQ=60)

                        CCTACTGGCGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTG                                                                     >  SRR4302533.4117858/1‑94 (MQ=60)

                         CTACTGGCGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGC                                                                    >  SRR4302533.1554644/1‑94 (MQ=60)

                          TACTGGCGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCG                                                                   <  SRR4302533.4750299/94‑1 (MQ=60)

                          TACTGGCGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCG                                                                   >  SRR4302533.3311837/1‑94 (MQ=60)

                              GGCGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAA                                                               <  SRR4302533.743112/94‑1 (MQ=60)

                              GGCGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAA                                                               <  SRR4302533.6048792/94‑1 (MQ=60)

                               GCGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAG                                                              <  SRR4302533.2666590/94‑1 (MQ=60)

                               GCGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAG                                                              <  SRR4302533.4612881/94‑1 (MQ=60)

                               GCGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAG                                                              <  SRR4302533.1711319/94‑1 (MQ=60)

                                CGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGC                                                             <  SRR4302533.5044494/94‑1 (MQ=60)

                                CGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGC                                                             <  SRR4302533.150776/94‑1 (MQ=60)

                                 GGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCC                                                            >  SRR4302533.1523608/1‑94 (MQ=60)

                                  GCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCA                                                           <  SRR4302533.5635316/94‑1 (MQ=60)

                                  GCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCA                                                           >  SRR4302533.2386500/1‑94 (MQ=60)

                                  GCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCA                                                           >  SRR4302533.135471/1‑94 (MQ=60)

                                   CTGCGATGTTTCTGCTCGTGATTTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAA                                                          >  SRR4302533.17043/1‑94 (MQ=60)

                                   CTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAA                                                          >  SRR4302533.3380667/1‑94 (MQ=60)

                                   CTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAA                                                          >  SRR4302533.2804057/1‑94 (MQ=60)

                                      CGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAAC                                                       <  SRR4302533.364946/94‑1 (MQ=60)

                                      CGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAAC                                                       >  SRR4302533.5293973/1‑94 (MQ=60)

                                      CGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAAC                                                       <  SRR4302533.1112170/94‑1 (MQ=60)

                                       GATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACC                                                      <  SRR4302533.6327113/94‑1 (MQ=60)

                                       GATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACC                                                      >  SRR4302533.2669304/1‑94 (MQ=60)

                                       GATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACC                                                      >  SRR4302533.3948425/1‑94 (MQ=60)

                                        ATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCT                                                     >  SRR4302533.1347607/1‑94 (MQ=60)

                                        ATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCT                                                     <  SRR4302533.180249/94‑1 (MQ=60)

                                        ATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCT                                                     >  SRR4302533.4839941/1‑94 (MQ=60)

                                        ATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCT                                                     >  SRR4302533.5144490/1‑94 (MQ=60)

                                         TGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTG                                                    >  SRR4302533.6261100/1‑94 (MQ=60)

                                          GTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGG                                                   <  SRR4302533.1996960/94‑1 (MQ=60)

                                          GTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGG                                                   >  SRR4302533.1964158/1‑94 (MQ=60)

                                           TTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTGCCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGG                                                  <  SRR4302533.6184861/94‑1 (MQ=60)

                                            TTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGG                                                 >  SRR4302533.6213301/1‑94 (MQ=60)

                                            TTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGG                                                 <  SRR4302533.25774/94‑1 (MQ=60)

                                            TTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGG                                                 <  SRR4302533.2418428/94‑1 (MQ=60)

                                              CTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGAA                                               >  SRR4302533.2929734/1‑94 (MQ=60)

                                               TGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTAT                                              >  SRR4302533.3767359/1‑94 (MQ=60)

                                                GCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATT                                             <  SRR4302533.2958126/94‑1 (MQ=60)

                                                 CTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTA                                            >  SRR4302533.4132287/1‑94 (MQ=60)

                                                 CTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTA                                            >  SRR4302533.4370156/1‑94 (MQ=60)

                                                 CTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTA                                            <  SRR4302533.3200714/94‑1 (MQ=60)

                                                   CGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACC                                          >  SRR4302533.3246457/1‑94 (MQ=60)

                                                   CGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACC                                          <  SRR4302533.5369989/94‑1 (MQ=60)

                                                   CGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACC                                          >  SRR4302533.3730849/1‑94 (MQ=60)

                                                   CGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACC                                          >  SRR4302533.2221567/1‑94 (MQ=60)

                                                     TGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTC                                        >  SRR4302533.3474000/1‑94 (MQ=60)

                                                     TGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGCATTACCTC                                        >  SRR4302533.4199572/1‑94 (MQ=60)

                                                        TGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCC                                     <  SRR4302533.4411746/94‑1 (MQ=60)

                                                        TGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCC                                     <  SRR4302533.2567138/94‑1 (MQ=60)

                                                        TGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCC                                     <  SRR4302533.4120758/94‑1 (MQ=60)

                                                         GTCACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCG                                    >  SRR4302533.3852214/1‑94 (MQ=60)

                                                            ACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGCA                                 >  SRR4302533.5674538/1‑94 (MQ=60)

                                                            ACCGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGCA                                 >  SRR4302533.1742963/1‑94 (MQ=60)

                                                              CGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGCACA                               >  SRR4302533.4450703/1‑94 (MQ=60)

                                                              CGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGCACA                               >  SRR4302533.2498186/1‑94 (MQ=60)

                                                              CGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGCACA                               >  SRR4302533.1238461/1‑94 (MQ=60)

                                                              CGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGCACA                               >  SRR4302533.1464393/1‑94 (MQ=60)

                                                              CGTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGCACA                               >  SRR4302533.4905661/1‑94 (MQ=60)

                                                               GTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGCACAA                              >  SRR4302533.1293675/1‑94 (MQ=60)

                                                               GTTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGCACAA                              >  SRR4302533.5311778/1‑94 (MQ=60)

                                                                TTACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGCACAAC                             >  SRR4302533.1417115/1‑94 (MQ=60)

                                                                 TACTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGCACAACC                            <  SRR4302533.2025153/94‑1 (MQ=60)

                                                                   CTCTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGCACAACCGC                          >  SRR4302533.6320875/1‑94 (MQ=60)

                                                                     CTGCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGCACAACCGCAG                        <  SRR4302533.4229857/94‑1 (MQ=60)

                                                                       GCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGCACAACCGCAGAT                      <  SRR4302533.4965013/94‑1 (MQ=60)

                                                                       GCCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGCACAACCGCAGAT                      <  SRR4302533.5315327/94‑1 (MQ=60)

                                                                        CCGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGCACAACCGCAGATG                     <  SRR4302533.1885034/94‑1 (MQ=60)

                                                                         CGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGCACAACCGCAGATGC                    >  SRR4302533.3186496/1‑94 (MQ=60)

                                                                         CGGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGCACAACCGCAGATGC                    >  SRR4302533.4419504/1‑94 (MQ=60)

                                                                          GGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTGCCTCTCCGGCACAACCGCAGATGCG                   <  SRR4302533.5984855/94‑1 (MQ=60)

                                                                          GGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGCACAACCGCAGATGCG                   >  SRR4302533.1749335/1‑94 (MQ=60)

                                                                          GGACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGCACAACCGCAGATGCG                   >  SRR4302533.1817859/1‑94 (MQ=60)

                                                                           GACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGCACAACCGCAGATGCGG                  <  SRR4302533.3339852/94‑1 (MQ=60)

                                                                            ACTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGCACAACCGCAGATGCGGG                 >  SRR4302533.4891515/1‑94 (MQ=60)

                                                                             CTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGCACAACCGCAGATGCGGGC                >  SRR4302533.6154590/1‑94 (MQ=60)

                                                                             CTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGCACAACCGCAGATGCGGGC                >  SRR4302533.426562/1‑94 (MQ=60)

                                                                             CTACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGCACAACCGCAGATGCGGGC                >  SRR4302533.4609574/1‑94 (MQ=60)

                                                                               ACCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGCACAACCGCAGATGCGGGCAA              >  SRR4302533.5691714/1‑94 (MQ=60)

                                                                                CCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGCACAACCGCAGATGCGGGCAAC             >  SRR4302533.2805323/1‑94 (MQ=60)

                                                                                CCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGCACAACCGCAGATGCGGGCAAC             <  SRR4302533.3977927/94‑1 (MQ=60)

                                                                                CCCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGCACAACCGCAGATGCGGGCAAC             >  SRR4302533.2457031/1‑94 (MQ=60)

                                                                                 CCTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGTTATTACCTCTCCGGCACAACCGCAGATGCGGGCAACT            <  SRR4302533.829947/94‑1 (MQ=60)

                                                                                  CTGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGCACAACCGCAGATGCGGGCAACTC           <  SRR4302533.5352682/94‑1 (MQ=60)

                                                                                   TGGTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGCACAACCGCAGATGCGGGCAACTCG          <  SRR4302533.4776368/94‑1 (MQ=60)

                                                                                     GTTCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGCACAACCGCAGATGCGGGCAACTCGAT        >  SRR4302533.4988935/1‑94 (MQ=60)

                                                                                       TCAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGCACAACCGCAGATGCGGGCAACTCGATTT      >  SRR4302533.2892946/1‑94 (MQ=60)

                                                                                        CAGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGCACAACCGCAGATGCGGGCAACTCGATTTT     >  SRR4302533.2590988/1‑94 (MQ=60)

                                                                                         AGCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGCACAACCGCAGATGCGGGCAACTCGATTTTC    >  SRR4302533.5606875/1‑94 (MQ=60)

                                                                                          GCGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGCACAACCGCAGATGCGGGCAACTCGATTTTCA   <  SRR4302533.5829669/94‑1 (MQ=60)

                                                                                           CGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGCACAACCGCAGATGCGGGCAACTCGATTTTCAC  >  SRR4302533.4599702/1‑94 (MQ=60)

                                                                                           CGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGCACAACCGCAGATGCGGGCAACTCGATTTTCAC  >  SRR4302533.3290963/1‑94 (MQ=60)

                                                                                           CGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGCACAACCGCAGATGCGGGCAACTCGATTTTCAC  >  SRR4302533.2733964/1‑94 (MQ=60)

TACGCCAATAATGATGTGGTGGTGCCTACTGGCGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGTGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGCACAACCGCAGATGCGGGCAACTCGATTTTCAC  >  NC_000913/4546884‑4547068

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 9 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`