Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1624	250.6	12620048	98.0%	12367647	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,544,274	T→C	L537P (CTC→CCC)	fimD →	FimD

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,544,274	0	T	C	100.0%	770.3 / NA	236	L537P (CTC→CCC)	fimD	FimD
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (132/104); total (132/104)

Only 100 of 240 total aligned reads displayed.

GAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACTCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCAGGCTGGATTAA  >  NC_000913/4544184‑4544363

 aGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCgg                                                                                        <  2:5426609/93‑1 (MQ=255)

 aGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCgg                                                                                        >  1:3761272/1‑93 (MQ=255)

 aGTTATTCAGGTTAAGCCAAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCAGCGTTACTCAGCAACCCgg                                                                                        <  1:3138307/93‑1 (MQ=255)

  gTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCggg                                                                                       >  1:6115798/1‑93 (MQ=255)

     aTTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGgcgc                                                                                    >  2:5958504/1‑93 (MQ=255)

      ttCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGca                                                                                   <  1:1877564/93‑1 (MQ=255)

      ttCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGca                                                                                   >  1:4900154/1‑93 (MQ=255)

         aGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACAt                                                                                <  2:4288654/93‑1 (MQ=255)

          ggTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATc                                                                               <  1:1755055/93‑1 (MQ=255)

          ggTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATc                                                                               >  2:339343/1‑93 (MQ=255)

          ggTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATc                                                                               <  2:787713/93‑1 (MQ=255)

          gcttAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATc                                                                               <  2:5872165/91‑1 (MQ=255)

            ttAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCaa                                                                             <  1:6258501/93‑1 (MQ=255)

             tAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAac                                                                            >  1:3044464/1‑93 (MQ=255)

               aGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAacac                                                                          >  2:2069577/1‑93 (MQ=255)

                gCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACt                                                                         <  2:503183/93‑1 (MQ=255)

                gCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACt                                                                         <  1:5807886/93‑1 (MQ=255)

                gCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACt                                                                         >  1:1536276/1‑93 (MQ=255)

                  cGAAATTCACCGACTATTACACCCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGt                                                                       <  1:1307191/93‑1 (MQ=255)

                  cGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGt                                                                       >  1:3258495/1‑93 (MQ=255)

                    aaaTTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTAt                                                                     <  2:162167/93‑1 (MQ=255)

                     aaTTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTAtt                                                                    >  1:6147085/1‑93 (MQ=255)

                      aTTCACCGACTATTACATCCTCGCTTATAACAAACGCGGGAAATTACAACTCGCCGTTACTCAGCAACCCGGGCGCACATCAACACTGTAttt                                                                   <  2:2831872/93‑1 (MQ=255)

                       ttCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTg                                                                  >  2:4611085/1‑93 (MQ=255)

                       ttCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTg                                                                  <  2:3623952/93‑1 (MQ=255)

                         cACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAg                                                                >  2:5137254/1‑93 (MQ=255)

                         cACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAg                                                                <  1:2850369/93‑1 (MQ=255)

                          aCCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGt                                                               <  1:960513/93‑1 (MQ=255)

                          aCCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGt                                                               >  2:5729169/1‑93 (MQ=255)

                          aCCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGt                                                               >  1:363460/1‑93 (MQ=255)

                           ccGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTg                                                              <  1:3159233/93‑1 (MQ=255)

                           ccGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTg                                                              >  1:5758856/1‑93 (MQ=255)

                            cGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTgg                                                             >  2:149051/1‑93 (MQ=255)

                            cGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTgg                                                             >  1:1575716/1‑93 (MQ=255)

                             gACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGt                                                            <  1:2133649/93‑1 (MQ=255)

                             gACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGt                                                            >  1:6297409/1‑93 (MQ=255)

                              aCTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTa                                                           <  2:2945436/93‑1 (MQ=255)

                              aCTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTa                                                           <  1:591996/93‑1 (MQ=255)

                                      aaCCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCaa                                                   >  1:1672259/1‑93 (MQ=255)

                                       aCCTCGCTTATAACAAACGCGGGCAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCaaa                                                  >  2:3990708/1‑93 (MQ=255)

                                       aCCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCaaa                                                  >  1:2892026/1‑93 (MQ=255)

                                       aCCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCaaa                                                  <  2:860667/93‑1 (MQ=255)

                                         cTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACt                                                <  1:4778209/93‑1 (MQ=255)

                                         cTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACt                                                <  1:891017/93‑1 (MQ=255)

                                           cGCTTATAACAAACGCGGGAAATTACAACTCACCGTCACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTa                                              <  1:3306183/93‑1 (MQ=255)

                                            gCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTAt                                             <  1:2616114/93‑1 (MQ=255)

                                             cTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTAtt                                            <  1:3072066/93‑1 (MQ=255)

                                              ttATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTg                                           <  2:2462551/93‑1 (MQ=255)

                                              ttATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTg                                           <  2:1233248/93‑1 (MQ=255)

                                              ttAGAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTg                                           <  2:2569209/93‑1 (MQ=255)

                                               tataACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTgg                                          <  1:6307744/93‑1 (MQ=255)

                                                ataACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTggg                                         >  1:3570985/1‑93 (MQ=255)

                                                ataACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTggg                                         <  2:3027296/93‑1 (MQ=255)

                                                ataACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTggg                                         >  2:2063341/1‑93 (MQ=255)

                                                 taACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTgggg                                        >  1:193155/1‑93 (MQ=255)

                                                 taACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTgggg                                        <  1:1087462/93‑1 (MQ=255)

                                                  aaCAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGa                                       <  1:4634235/93‑1 (MQ=255)

                                                    cAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAAc                                     >  1:1186150/1‑93 (MQ=255)

                                                     aaaCGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGATAGCCATCAAACTTATTGGGGAACg                                    <  2:1072827/93‑1 (MQ=255)

                                                      aaCGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGa                                   >  2:3124689/1‑93 (MQ=255)

                                                         gcgGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATTAAACTTATTGGGGAACGAGTa                                >  2:2173681/1‑93 (MQ=255)

                                                          cgGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTaa                               <  2:493612/93‑1 (MQ=255)

                                                          cgGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTaa                               <  1:678693/93‑1 (MQ=255)

                                                           gggAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAAt                              >  2:389380/1‑93 (MQ=255)

                                                            ggAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACCAGTAATg                             >  2:5351184/1‑93 (MQ=255)

                                                             gAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGt                            >  1:5489723/1‑93 (MQ=255)

                                                              aaaTTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTc                           <  1:73760/93‑1 (MQ=255)

                                                              aaaTTACAACACACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTc                           <  2:2011336/93‑1 (MQ=255)

                                                               aaTTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCg                          >  2:5164462/1‑93 (MQ=255)

                                                                aTTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGa                         <  1:4598881/93‑1 (MQ=255)

                                                                aTTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGa                         >  2:2273141/1‑93 (MQ=255)

                                                                 ttACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGAt                        <  2:5023269/93‑1 (MQ=255)

                                                                 ttACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGAt                        <  2:5594838/93‑1 (MQ=255)

                                                                  tACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATg                       <  2:487462/93‑1 (MQ=255)

                                                                     aaCTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGc                    >  2:381306/1‑93 (MQ=255)

                                                                      aCTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCa                   >  1:3718259/1‑93 (MQ=255)

                                                                      aCTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTAGATGAGCa                   >  1:4370065/1‑93 (MQ=255)

                                                                          aCCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTc               >  2:1736084/1‑93 (MQ=255)

                                                                          aCCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTc               >  2:1441917/1‑93 (MQ=255)

                                                                          aCCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTc               <  1:3977773/93‑1 (MQ=255)

                                                                          aCCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTc               <  1:3365669/93‑1 (MQ=255)

                                                                           ccGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTcc              >  2:5929657/1‑93 (MQ=255)

                                                                            cGTTACTCAGCATCCCGCGCGCACATCATCTCTGTATTTGAGTGGTAGCAAGCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCa             <  2:3224529/93‑1 (MQ=255)

                                                                            cGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCa             <  1:4233730/93‑1 (MQ=255)

                                                                             gTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCAg            <  1:3546191/93‑1 (MQ=255)

                                                                             gTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCAg            >  1:1628446/1‑93 (MQ=255)

                                                                               tACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCAGGc          <  1:2244549/93‑1 (MQ=255)

                                                                               tACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCAGGc          >  2:2434682/1‑93 (MQ=255)

                                                                               tACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCAGGc          <  1:2743206/93‑1 (MQ=255)

                                                                                aCTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCAGGCt         <  2:1840192/93‑1 (MQ=255)

                                                                                 cTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCAGGCTg        >  2:5252777/1‑93 (MQ=255)

                                                                                 cTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCAGGCTg        >  1:427692/1‑93 (MQ=255)

                                                                                  tCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCAGGCTgg       <  2:6158611/93‑1 (MQ=255)

                                                                                    aGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCAGGCTGGAt     <  1:802717/93‑1 (MQ=255)

                                                                                     gCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCAGGCTGGAtt    >  2:406432/1‑93 (MQ=255)

                                                                                      cAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCAGGCTGGATTa   <  1:5891239/93‑1 (MQ=255)

                                                                                       aaCCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCAGGCTGGATTaa  >  1:3833742/1‑93 (MQ=255)

                                                                                       aaCCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCAGGCTGGATTaa  >  2:4447223/1‑93 (MQ=255)

                                                                                       aaCCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCAGGCTGGATTaa  >  2:4110729/1‑93 (MQ=255)

                                                                                       aaCCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCAGGCTGGATTaa  >  1:4994169/1‑93 (MQ=255)

GAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACTCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCAGGCTGGATTAA  >  NC_000913/4544184‑4544363

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 28 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

ACGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACTCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCAGGCTGGATTAAATA  >  NC_000913/4544181‑4544366

ACGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACC                                                                                              <  SRR4302533.4238222/94‑1 (MQ=60)

ACGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACC                                                                                              >  SRR4302533.4640668/1‑94 (MQ=60)

 CGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCC                                                                                             >  SRR4302533.2119535/1‑94 (MQ=60)

 CGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCC                                                                                             >  SRR4302533.5872664/1‑94 (MQ=60)

 CGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCC                                                                                             <  SRR4302533.2432597/94‑1 (MQ=60)

 CGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCC                                                                                             <  SRR4302533.5284840/94‑1 (MQ=60)

 CGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCC                                                                                             >  SRR4302533.3579416/1‑94 (MQ=60)

  GGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCG                                                                                            >  SRR4302533.2233927/1‑94 (MQ=60)

  GGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCG                                                                                            >  SRR4302533.309300/1‑94 (MQ=60)

   GAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGG                                                                                           >  SRR4302533.3784328/1‑94 (MQ=60)

    AGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGG                                                                                          >  SRR4302533.6152695/1‑94 (MQ=60)

    AGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGG                                                                                          >  SRR4302533.3568204/1‑94 (MQ=60)

    AGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGG                                                                                          <  SRR4302533.3795050/94‑1 (MQ=60)

    AGTTATTCAGGTTAAGCCAAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCAGCGTTACTCAGCAACCCGGG                                                                                          <  SRR4302533.3157601/94‑1 (MQ=60)

     GTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGC                                                                                         >  SRR4302533.3841706/1‑94 (MQ=60)

      TTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCG                                                                                        >  SRR4302533.3076655/1‑94 (MQ=60)

        ATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCA                                                                                      >  SRR4302533.4929846/1‑94 (MQ=60)

         TTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCAC                                                                                     >  SRR4302533.2659137/1‑94 (MQ=60)

         TTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCAC                                                                                     <  SRR4302533.1889008/94‑1 (MQ=60)

           CAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACAT                                                                                   <  SRR4302533.4309234/94‑1 (MQ=60)

           CAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACAT                                                                                   <  SRR4302533.1780542/94‑1 (MQ=60)

           CAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACAT                                                                                   >  SRR4302533.5881714/1‑94 (MQ=60)

             GGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCA                                                                                 <  SRR4302533.1765745/94‑1 (MQ=60)

             GGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCA                                                                                 <  SRR4302533.1574242/94‑1 (MQ=60)

              GTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAA                                                                                >  SRR4302533.4121518/1‑94 (MQ=60)

               TTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAAC                                                                               >  SRR4302533.3063099/1‑94 (MQ=60)

               TTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAAC                                                                               <  SRR4302533.6295925/94‑1 (MQ=60)

               TTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAAC                                                                               <  SRR4302533.313574/94‑1 (MQ=60)

                  AGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACT                                                                            >  SRR4302533.1545507/1‑94 (MQ=60)

                  AGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACT                                                                            >  SRR4302533.2893859/1‑94 (MQ=60)

                   GCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTG                                                                           <  SRR4302533.5842958/94‑1 (MQ=60)

                    CCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGT                                                                          >  SRR4302533.3278593/1‑94 (MQ=60)

                     CGAAATTCACCGACTATTACACCCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTA                                                                         <  SRR4302533.1315041/94‑1 (MQ=60)

                       AAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATT                                                                       >  SRR4302533.6184092/1‑94 (MQ=60)

                       AAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATT                                                                       >  SRR4302533.2323635/1‑94 (MQ=60)

                          TTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGA                                                                    >  SRR4302533.903750/1‑94 (MQ=60)

                            CACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGT                                                                  <  SRR4302533.2867906/94‑1 (MQ=60)

                            CACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGT                                                                  >  SRR4302533.365669/1‑94 (MQ=60)

                             ACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTG                                                                 <  SRR4302533.966158/94‑1 (MQ=60)

                             ACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTG                                                                 <  SRR4302533.6191298/94‑1 (MQ=60)

                             ACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTG                                                                 >  SRR4302533.5793607/1‑94 (MQ=60)

                              CCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGG                                                                >  SRR4302533.1585203/1‑94 (MQ=60)

                              CCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGG                                                                >  SRR4302533.1630801/1‑94 (MQ=60)

                              CCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGG                                                                <  SRR4302533.3178676/94‑1 (MQ=60)

                               CGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGT                                                               <  SRR4302533.363727/94‑1 (MQ=60)

                               CGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGT                                                               >  SRR4302533.6334990/1‑94 (MQ=60)

                               CGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGT                                                               >  SRR4302533.6084093/1‑94 (MQ=60)

                                GACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTA                                                              <  SRR4302533.2146807/94‑1 (MQ=60)

                                 ACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAG                                                             <  SRR4302533.641964/94‑1 (MQ=60)

                                 ACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAG                                                             <  SRR4302533.595491/94‑1 (MQ=60)

                                   TATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCC                                                           >  SRR4302533.5797131/1‑94 (MQ=60)

                                   TATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCC                                                           >  SRR4302533.448011/1‑94 (MQ=60)

                                    ATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCA                                                          <  SRR4302533.3173088/94‑1 (MQ=60)

                                     TTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCAT                                                         <  SRR4302533.3942944/94‑1 (MQ=60)

                                      TACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATC                                                        >  SRR4302533.5037902/1‑94 (MQ=60)

                                       ACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCA                                                       >  SRR4302533.1186364/1‑94 (MQ=60)

                                        CAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAA                                                      >  SRR4302533.1682367/1‑94 (MQ=60)

                                         AACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAA                                                     >  SRR4302533.2909806/1‑94 (MQ=60)

                                         AACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAA                                                     >  SRR4302533.2909804/1‑94 (MQ=60)

                                           CCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACT                                                   <  SRR4302533.2863081/94‑1 (MQ=60)

                                            CTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTT                                                  <  SRR4302533.4807152/94‑1 (MQ=60)

                                            CTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTT                                                  <  SRR4302533.896253/94‑1 (MQ=60)

                                              CGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTAT                                                >  SRR4302533.787941/1‑94 (MQ=60)

                                              CGCTTATAACAAACGCGGGAAATTACAACTCACCGTCACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTAT                                                <  SRR4302533.3326598/94‑1 (MQ=60)

                                               GCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATT                                               <  SRR4302533.6337207/94‑1 (MQ=60)

                                               GCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATT                                               <  SRR4302533.2632171/94‑1 (MQ=60)

                                                CTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTG                                              <  SRR4302533.3090926/94‑1 (MQ=60)

                                                CTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTG                                              >  SRR4302533.4967967/1‑94 (MQ=60)

                                                CTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTG                                              >  SRR4302533.3313035/1‑94 (MQ=60)

                                                CTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTG                                              >  SRR4302533.1336496/1‑94 (MQ=60)

                                                 TTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGG                                             >  SRR4302533.5709888/1‑94 (MQ=60)

                                                 TTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGG                                             >  SRR4302533.5929534/1‑94 (MQ=60)

                                                 TTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGG                                             <  SRR4302533.4657340/94‑1 (MQ=60)

                                                  TATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGG                                            >  SRR4302533.3592991/1‑94 (MQ=60)

                                                  TATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGG                                            <  SRR4302533.6345573/94‑1 (MQ=60)

                                                  TATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGG                                            <  SRR4302533.3381736/94‑1 (MQ=60)

                                                   ATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGG                                           >  SRR4302533.993329/1‑94 (MQ=60)

                                                   ATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGG                                           >  SRR4302533.194373/1‑94 (MQ=60)

                                                    TAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGA                                          <  SRR4302533.1093869/94‑1 (MQ=60)

                                                    TAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGA                                          >  SRR4302533.1916369/1‑94 (MQ=60)

                                                    TAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGA                                          >  SRR4302533.4419879/1‑94 (MQ=60)

                                                     AACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAA                                         <  SRR4302533.4662316/94‑1 (MQ=60)

                                                      ACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAAC                                        >  SRR4302533.1193271/1‑94 (MQ=60)

                                                       CAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACG                                       >  SRR4302533.344506/1‑94 (MQ=60)

                                                        AAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGA                                      >  SRR4302533.1674764/1‑94 (MQ=60)

                                                          ACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGA                                    >  SRR4302533.770637/1‑94 (MQ=60)

                                                           CGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTA                                   >  SRR4302533.4767811/1‑94 (MQ=60)

                                                             CGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAAT                                 <  SRR4302533.682705/94‑1 (MQ=60)

                                                              GGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATG                                >  SRR4302533.4036016/1‑94 (MQ=60)

                                                              GGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATG                                >  SRR4302533.2139611/1‑94 (MQ=60)

                                                              GGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATG                                <  SRR4302533.6332239/94‑1 (MQ=60)

                                                               GGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGT                               >  SRR4302533.3693203/1‑94 (MQ=60)

                                                               GGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGT                               <  SRR4302533.6213438/94‑1 (MQ=60)

                                                               GGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGT                               >  SRR4302533.5522815/1‑94 (MQ=60)

                                                                GAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTC                              <  SRR4302533.5803547/94‑1 (MQ=60)

                                                                 AAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCG                             <  SRR4302533.74235/94‑1 (MQ=60)

                                                                  AATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGA                            >  SRR4302533.6346851/1‑94 (MQ=60)

                                                                   ATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGAT                           <  SRR4302533.4626743/94‑1 (MQ=60)

                                                                   ATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGAT                           >  SRR4302533.3263618/1‑94 (MQ=60)

                                                                     TACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGA                         >  SRR4302533.707114/1‑94 (MQ=60)

                                                                     TACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGA                         <  SRR4302533.5056382/94‑1 (MQ=60)

                                                                      ACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAG                        >  SRR4302533.474379/1‑94 (MQ=60)

                                                                      ACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAG                        >  SRR4302533.2712578/1‑94 (MQ=60)

                                                                      ACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAG                        <  SRR4302533.2891127/94‑1 (MQ=60)

                                                                       CAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGC                       >  SRR4302533.1698744/1‑94 (MQ=60)

                                                                       CAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGC                       >  SRR4302533.1374227/1‑94 (MQ=60)

                                                                       CAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGC                       <  SRR4302533.1608045/94‑1 (MQ=60)

                                                                        AACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCA                      >  SRR4302533.3764062/1‑94 (MQ=60)

                                                                        AACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCA                      >  SRR4302533.3741079/1‑94 (MQ=60)

                                                                        AACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTAGATGAGCA                      >  SRR4302533.4396448/1‑94 (MQ=60)

                                                                           TCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTCATGTCGATGAGCAATT                   >  SRR4302533.6169286/1‑94 (MQ=60)

                                                                           TCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATT                   <  SRR4302533.361500/94‑1 (MQ=60)

                                                                            CACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTC                  >  SRR4302533.348102/1‑94 (MQ=60)

                                                                             ACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCC                 <  SRR4302533.182527/94‑1 (MQ=60)

                                                                             ACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCC                 <  SRR4302533.4001991/94‑1 (MQ=60)

                                                                             ACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCC                 <  SRR4302533.3386458/94‑1 (MQ=60)

                                                                               CGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCAG               <  SRR4302533.4259314/94‑1 (MQ=60)

                                                                               CGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCAG               >  SRR4302533.1638309/1‑94 (MQ=60)

                                                                                GTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCAGG              >  SRR4302533.4299024/1‑94 (MQ=60)

                                                                                GTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCAGG              <  SRR4302533.3568049/94‑1 (MQ=60)

                                                                                  TACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCAGGCT            <  SRR4302533.2258420/94‑1 (MQ=60)

                                                                                  TACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCAGGCT            <  SRR4302533.2760026/94‑1 (MQ=60)

                                                                                  TACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCAGGCT            >  SRR4302533.3220726/1‑94 (MQ=60)

                                                                                   ACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCAGGCTG           >  SRR4302533.430244/1‑94 (MQ=60)

                                                                                    CTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCAGGCTGG          >  SRR4302533.6001362/1‑94 (MQ=60)

                                                                                       AGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCAGGCTGGATT       <  SRR4302533.1972912/94‑1 (MQ=60)

                                                                                       AGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCAGGCTGGATT       >  SRR4302533.1242889/1‑94 (MQ=60)

                                                                                       AGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCAGGCTGGATT       >  SRR4302533.815267/1‑94 (MQ=60)

                                                                                       AGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCAGGCTGGATT       <  SRR4302533.807432/94‑1 (MQ=60)

                                                                                         CAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCAGGCTGGATTAA     >  SRR4302533.4906132/1‑94 (MQ=60)

                                                                                         CAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCAGGCTGGATTAA     >  SRR4302533.5024447/1‑94 (MQ=60)

                                                                                         CAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCAGGCTGGATTAA     <  SRR4302533.5926826/94‑1 (MQ=60)

                                                                                         CAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCAGGCTGGATTAA     >  SRR4302533.3857173/1‑94 (MQ=60)

                                                                                          AACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCAGGCTGGATTAAA    >  SRR4302533.2524510/1‑94 (MQ=60)

                                                                                           ACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCAGGCTGGATTAAAT   >  SRR4302533.5580609/1‑94 (MQ=60)

                                                                                            CCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCAGGCTGGATTAAATA  <  SRR4302533.4564263/94‑1 (MQ=60)

                                                                                            CCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCAGGCTGGATTAAATA  >  SRR4302533.3433853/1‑94 (MQ=60)

                                                                                            CCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCAGGCTGGATTAAATA  <  SRR4302533.1747545/94‑1 (MQ=60)

                                                                                            CCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCAGGCTGGATTAAATA  <  SRR4302533.2458466/94‑1 (MQ=60)

ACGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACTCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCAGGCTGGATTAAATA  >  NC_000913/4544181‑4544366

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 17 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`