Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1548 |
369.5 |
20095359 |
96.9% |
19472402 |
93.0 |
Breseq alignment
N/A
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CGATTTCGGTCTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑T‑‑‑C‑CT‑‑CCCCCC‑‑GTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTACCGGCCCCTGCCTGGTGCT > NC_000913/3958167‑3958353
|
CGATTTCGGTCTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑T‑‑‑C‑C < SRR4302540.4632501/94‑1 (MQ=60)
CGATTTCGGTCTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑T‑‑‑C‑C > SRR4302540.9012743/1‑94 (MQ=60)
CCATTTCGGTCTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑T‑‑‑C‑C < SRR4302540.7799512/94‑1 (MQ=60)
GATTTCGGTCTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑T‑‑‑C‑CC < SRR4302540.6656475/94‑1 (MQ=60)
ATTTCGGTCTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑T‑‑‑C‑CC‑‑C < SRR4302540.80557/94‑1 (MQ=60)
TTTCGGTCTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCAGATTCAAATGCGATTCTGCTACAA‑‑‑T‑‑‑C‑CC‑‑CC < SRR4302540.3753272/94‑1 (MQ=60)
TTTCGGTCTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑T‑‑‑C‑CC‑‑CC < SRR4302540.7685784/94‑1 (MQ=60)
TTTCGGTCTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑T‑‑‑C‑CC‑‑CC < SRR4302540.7685785/94‑1 (MQ=60)
TTTCGGTCTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑T‑‑‑C‑CC‑‑CC < SRR4302540.6502073/94‑1 (MQ=60)
TTCGGTCTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑T‑‑‑C‑Ccacc > SRR4302540.2553601/1‑90 (MQ=60)
TTCGGTCTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑T‑‑‑C‑CC‑‑CCC < SRR4302540.8739224/94‑1 (MQ=60)
TTCGGTCTGCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑T‑‑‑C‑CC‑‑CCC < SRR4302540.2543285/94‑1 (MQ=60)
TCGGTCTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑T‑‑‑C‑CC‑‑CCCC > SRR4302540.5890726/1‑94 (MQ=60)
TCGGTCTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑T‑‑‑C‑CC‑‑CCCC > SRR4302540.9061602/1‑94 (MQ=60)
TGTCTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑T‑‑‑C‑CC‑‑CCCCCC < SRR4302540.4466859/94‑1 (MQ=60)
GGTCTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑T‑‑‑C‑CC‑‑CCCCCC > SRR4302540.3902486/1‑94 (MQ=60)
GGTCTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑T‑‑‑C‑CC‑‑CCCCCC > SRR4302540.918654/1‑94 (MQ=60)
GTCTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑T‑‑‑C‑CC‑‑CCCCCC‑‑C < SRR4302540.5621968/94‑1 (MQ=60)
GTCTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑T‑‑‑C‑CC‑‑CCCCCC‑‑C > SRR4302540.2490604/1‑94 (MQ=60)
CTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑T‑‑‑C‑CC‑‑CCCCCCccc > SRR4302540.1690915/1‑91 (MQ=60)
CTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑T‑‑‑A‑CC‑‑CCCCCC‑‑GTT > SRR4302540.3695233/1‑94 (MQ=60)
TTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑T‑‑‑C‑CC‑‑CCCCCCccgt < SRR4302540.7790747/94‑5 (MQ=60)
TCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑TC‑‑C‑CC‑‑CCCCCC‑‑GTTC < SRR4302540.7130286/94‑1 (MQ=60)
TCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑T‑‑‑C‑CC‑‑CCCCCCccccg > SRR4302540.2318780/1‑89 (MQ=60)
CTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑T‑‑‑C‑CC‑‑CCCCCC‑‑GTTCGA > SRR4302540.4375914/1‑94 (MQ=60)
TCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑T‑‑‑C‑CC‑‑CCCCCCccccccc > SRR4302540.7234556/1‑87 (MQ=60)
TCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑T‑‑‑C‑CA‑‑CCCCCCccccccc > SRR4302540.4401037/1‑87 (MQ=60)
CTCTCTTATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACCCGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑TCC‑C‑CC‑‑CCCCCC‑‑GTTCGA < SRR4302540.3570156/94‑1 (MQ=60)
CTCTCTGATTTAAACATCCGCCGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑TC‑‑C‑CC‑‑CCCCCC‑‑GTTCGAA < SRR4302540.1582047/94‑1 (MQ=60)
CTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑TCC‑C‑CC‑‑CCCCCC‑‑GTTCGA < SRR4302540.6385666/94‑1 (MQ=60)
CTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑T‑‑‑C‑CC‑‑CCCCCCccctcgca > SRR4302540.8910130/1‑86 (MQ=60)
CCCTCTGATTTAAACCTCCGCAGGCAACCGGTTAGCGGCTTACACGCGGTCAAATTCAAATGCGATTCTGCTACAAAC‑C‑‑‑C‑CC‑‑CCCCCC‑‑GTTCGA < SRR4302540.8388715/94‑1 (MQ=60)
tctttttTTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGGCACATTCAAACGCGATTCTGCCACAAC‑‑C‑‑‑C‑CC‑‑CCCCCC‑‑GTTCGAAG < SRR4302540.7238672/87‑1 (MQ=60)
TCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑T‑‑‑C‑CC‑‑CCCCCCccgctcgaa > SRR4302540.3228299/1‑85 (MQ=60)
CTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑T‑‑‑C‑CC‑‑CCCCCCcccttcgaag > SRR4302540.3524528/1‑84 (MQ=60)
CTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATCCTGCTACAA‑‑‑T‑‑‑C‑Ccgcccccccctggcccg > SRR4302540.3613818/1‑77 (MQ=60)
TCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑TC‑‑C‑CC‑‑CCCCCC‑‑CTTCGAAGAT > SRR4302540.10027468/1‑94 (MQ=60)
TGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAC‑‑‑T‑‑‑C‑CC‑‑CCCCCC‑‑GTTCGAAGATTGA < SRR4302540.1798442/94‑1 (MQ=60)
TGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑TCC‑C‑CC‑‑CCCCCC‑‑GTTCGAAGATT < SRR4302540.5516814/94‑1 (MQ=60)
TGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑T‑‑‑CACC‑‑CCCCCC‑‑GTTCGcataacg > SRR4302540.9480121/1‑87 (MQ=60)
TGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑T‑‑‑C‑CC‑‑CCCCCCccctcgaagattg > SRR4302540.643737/1‑81 (MQ=60)
TGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑T‑‑‑C‑CC‑‑CCCCCC‑‑GTTCGAAGATTGA > SRR4302540.6688375/1‑94 (MQ=60)
GATTTAAACATCCGCCGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAAGGCGATTCTGCTACAA‑‑‑TC‑‑C‑CC‑‑CCCCCC‑‑GTTCGAAGATTGA < SRR4302540.9327977/94‑1 (MQ=60)
GATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑TC‑‑C‑CC‑‑CCCCCC‑‑GTTCGAAGATTGA < SRR4302540.516565/94‑1 (MQ=60)
GATTTAAACAACCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGGTTCTGCTACAA‑‑‑TCCCC‑CC‑‑CCCCCC‑‑GTTCGAAGATT < SRR4302540.4254642/94‑1 (MQ=60)
ATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑T‑‑‑C‑CC‑‑CCCCCCccctccgcagattgg > SRR4302540.9530721/1‑79 (MQ=60)
TTAAACATCCGCAGCCAACCGGTTAGCGGTTTACCCGGGGTCCCATTCAAATGCGATTTTTCTCCAACCCC‑‑‑C‑CC‑‑CCCCCC‑‑GTTCGAAGATTGAG < SRR4302540.4502601/94‑1 (MQ=30)
TTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑TC‑‑C‑CC‑‑CCCCCC‑‑GTTCGAAGATTGAGCA < SRR4302540.136324/94‑1 (MQ=60)
TAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑T‑‑‑C‑CC‑‑CCCCCCccgtcggagatttacaga > SRR4302540.2624583/1‑76 (MQ=60)
TAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑T‑‑‑C‑CC‑‑CCCCCCcccttccacgattggaca > SRR4302540.4610833/1‑76 (MQ=60)
TAAACATCCGCAGCCAACCGGTTAGCGGCTTACACCGGGTCCCATTCAAATCCGATTCTGCTACAA‑‑‑TCC‑C‑CC‑‑CCCCCC‑‑GTTCGAAGATTGAGCA < SRR4302540.9380584/94‑1 (MQ=60)
AAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑TCC‑C‑CC‑‑CCCCCC‑‑GTTCGAAGATTGAGCAA < SRR4302540.8724499/94‑1 (MQ=60)
AAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑T‑‑‑C‑CC‑‑CCCCCCccttcaagaatttggaaaa > SRR4302540.6750211/1‑75 (MQ=60)
AACATCCGCCGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGGTTCTGCTACAA‑‑‑TCC‑C‑CC‑‑CCCCCC‑‑GTTCGAAGATTGAGCAAT < SRR4302540.1075872/94‑1 (MQ=60)
AACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCTCATTCAAATGCGATTCTGCTACAA‑‑‑TCC‑C‑CC‑‑CCCCCC‑‑GTTCGAAGATTGAGCAAT < SRR4302540.3889975/94‑1 (MQ=60)
AACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑TC‑‑C‑CC‑‑CCCCCC‑‑GTTCGAAGATTGAGCAATA < SRR4302540.4218476/94‑1 (MQ=60)
AACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑T‑‑‑C‑CC‑‑CCCCCCccccgcgaacgatccagaat > SRR4302540.8574671/1‑74 (MQ=60)
ACCTCCGCAGCCAACCGGGTAGCGGCTTACACGCGGTCACATTCAAAAGCCATTCTGCTACAAAC‑C‑‑‑C‑CC‑‑CCCCCC‑‑GTTCGAAGATTGAGCAATA < SRR4302540.1523130/94‑1 (MQ=60)
ACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑TCC‑C‑CC‑‑CCCCCC‑‑GTTCGAAGATTGAGCAATA < SRR4302540.1452492/94‑1 (MQ=60)
CCTCCGCAGCCAACCGGTTTGCGGCTTACACGCGGTCACATTCAATTGCGATTCTGCTACCA‑‑‑TCC‑C‑CC‑‑CCCCCC‑‑GTTCGAAGATTGAGCAATCC < SRR4302540.9065361/94‑1 (MQ=60)
CATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑TC‑‑C‑CC‑‑CCCCCC‑‑GTTCGAAGATTGAGCAATACA < SRR4302540.5799773/94‑1 (MQ=60)
ATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑TCC‑C‑CC‑‑CCCCCC‑‑GTTCGAAGTTTGAGCAAaaac > SRR4302540.3252223/1‑90 (MQ=60)
ATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑T‑‑‑C‑CC‑‑CCCCCCccgtcggaaaatgtcttatagac > SRR4302540.4928642/1‑71 (MQ=60)
ATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑T‑‑‑C‑CC‑‑CCCCCCcccctcccaaggttaaacaaacc > SRR4302540.4979541/1‑71 (MQ=60)
TCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑T‑‑‑C‑CC‑‑CCCCCCcccctcgccaaatgcgcccaacac > SRR4302540.999164/1‑70 (MQ=60)
CCGCAGCCAACCGGTTAGCGGCTTACCCGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑TCC‑C‑CC‑‑CCCCCC‑‑GTTCGAAGATTGAGCAATACACC < SRR4302540.5746158/94‑1 (MQ=60)
CCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑TCC‑C‑CC‑‑CCCCCC‑‑GTTCGAAGATTGAGCAATACACC < SRR4302540.6882453/94‑1 (MQ=60)
CGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑T‑‑‑C‑Cccccaccccctagcgagatagggcacacccctc > SRR4302540.2332523/1‑61 (MQ=60)
cccagCAACCGGTTAGGGGCCTACACGGGGTCCAATTCAAATGCGATTCTGCTTCAACC‑C‑‑‑C‑CC‑‑CCCCCC‑‑GTTCGAAGATTGAGCAATACACCTA < SRR4302540.3607062/89‑1 (MQ=33)
GCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑TC‑‑C‑CC‑‑CCCCCC‑‑GTTCGAAGATTGAGCAATACACCTAT < SRR4302540.8201913/94‑1 (MQ=60)
GCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTACTACAA‑‑‑TC‑‑C‑CC‑‑CCCCCC‑‑GTTCGAAGATTGAGCAATACACCTAT < SRR4302540.4758867/94‑1 (MQ=60)
CCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑TC‑‑C‑CC‑‑CCCCCC‑‑GTTCGAAGATTGAGCAATACACCTAT < SRR4302540.4462052/94‑1 (MQ=60)
CCAGCCAACCCGTTAGCGGCTTACACGCGGTCCCATTCAAATGCCATTCTGCTACAA‑‑‑TCCCC‑CC‑‑CCCCCC‑‑GTTCGAAGATTGAGCAATACACCT < SRR4302540.6710081/94‑1 (MQ=60)
CAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑TCC‑C‑CC‑‑CCCCCC‑‑GTTCGAAGATTGAGCAATACACCTAT < SRR4302540.9869166/94‑1 (MQ=60)
CAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑T‑‑‑C‑CC‑‑CCCCCCcccctcccaagcttgggcaatcacccat > SRR4302540.8240970/1‑66 (MQ=60)
CAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTAAAATGCGATTCTGCTACAA‑‑‑T‑‑‑C‑Ccccgccccgcacaggaaagtgggaaagacacacaa > SRR4302540.1086658/1‑59 (MQ=60)
AGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑T‑‑‑C‑CC‑‑CCCCCC‑‑GTTCGAAGATTGAGCAATACACCTATGCG > SRR4302540.1621205/1‑94 (MQ=60)
AGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑T‑‑‑C‑CA‑‑CCCCCCccgtctgaaaacttgagaacaacacctat > SRR4302540.5272405/1‑65 (MQ=60)
GGCAACCGGTTAGCGGCTTACCCGCGGTCACATTCAAATGCCATTCTGCTACAA‑‑‑TCCCC‑CC‑‑CCCCCC‑‑GTTCGAAGATTGAGCAATACACCTATG < SRR4302540.989776/94‑1 (MQ=60)
GCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAACC‑C‑‑‑C‑CC‑‑CCCCCC‑‑GTTCGAAGATTGAGCAATACACCTATGC < SRR4302540.4617027/94‑1 (MQ=60)
GCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑TCC‑C‑CC‑‑CCCCCC‑‑GTTCGAAGATTGAGCAATACACCTATGC < SRR4302540.1670702/94‑1 (MQ=60)
GCCAACCGGGTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑TCC‑C‑CC‑‑CCCCCC‑‑GTTCGAAGATTGAGCAATACACCTATGC < SRR4302540.6548793/94‑1 (MQ=60)
CCAACCGGTTAGCGGCTTACACGCGGTAACAGTCAAATGCGATTTTGCTACAA‑‑‑TCC‑C‑CC‑‑CCCCCC‑‑GTTCGAAGATTGAGCAATACACCTATGCG < SRR4302540.143947/94‑1 (MQ=60)
CAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑T‑‑‑C‑CC‑‑CCCCCC‑‑GTTCGAAGATTGAGCAATACACCTATGCGTCT < SRR4302540.6319993/94‑1 (MQ=60)
CAACCGGTGAGCGGCTTACACGCGGGCACATTCAAATGCGAGTCTTCTACAAACCC‑‑‑C‑CC‑‑CCCCCC‑‑GTTCGAAGATTGAGCAATACACCTATGCG < SRR4302540.4517407/94‑1 (MQ=60)
ACCCGGTT‑GCGGCTTTCCCGCGGTCACATTCAAAAGCGATTCTTCTACAA‑‑‑TCC‑C‑CC‑‑CCCCCC‑‑GTTCGAAGATTGAGCAATACACCTATGCGTCT < SRR4302540.3498630/94‑1 (MQ=57)
AACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑TCC‑C‑CC‑‑CCCCCC‑‑GGTCGAAGATTTAGCAATACACCTATGGGTC > SRR4302540.2715368/1‑94 (MQ=60)
AACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑TC‑‑C‑CC‑‑CCCCCC‑‑GTTCGAAGATTGAGCAATACACCTATGCGTCT < SRR4302540.667842/94‑1 (MQ=60)
AACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑T‑‑‑C‑CC‑‑CCCCCCcccttcccaaattgagaaaaaaaccaatccgcc > SRR4302540.1979182/1‑61 (MQ=60)
acccgtttagggctttacccgcgtccccaTCAAATGCGATTCTGCTACAAAC‑C‑‑‑C‑CC‑‑CCCCCC‑‑GTTCGAAGATTGAGCAATACACCTATGCGTCT < SRR4302540.8578463/65‑1 (MQ=60)
ACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑TCC‑C‑CC‑‑CCCCCC‑‑GTTCGAAGATTGAGCAATACACCTATGCGTCT < SRR4302540.4600959/94‑1 (MQ=60)
GGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑TC‑‑C‑CC‑‑CCCCCC‑‑GTTCGAAGATTGAGCAATACACCTATGCGTCTAAAC < SRR4302540.7742796/94‑1 (MQ=60)
GGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑TC‑‑C‑CC‑‑CCCCCC‑‑GCTCGAAGATTGAGGAATACCCCTCTGAGTCTAAAC > SRR4302540.331033/1‑94 (MQ=60)
CGTTAGCGGCTTACCCGCGGTCACATTCAAATTCGATTCTGCTACAA‑‑‑TCC‑C‑CC‑‑CCCCCC‑‑GTTCGAAGATTGAGCAATACACCTATGCGTCTAAA < SRR4302540.9324049/94‑1 (MQ=60)
GTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑TCCCC‑CA‑‑CCCCCC‑‑GTTCGAAGATTGAGCAATACACCTATGCGTCTAAA < SRR4302540.9703533/94‑1 (MQ=60)
GTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑TCC‑C‑CC‑‑CCCCCC‑‑GTTCGAAGATTGAGCAATACACCTATGCGTCTAAAC < SRR4302540.6354283/94‑1 (MQ=60)
GTTAGCGGCTGACCCGCGGTCCAATTCAAATGCGATTCTGCTACAA‑‑‑TCC‑C‑CC‑‑CCCCCC‑‑GTTCGAAGATTGAGCAATACACCTATGCGTCTAAAC < SRR4302540.6477837/94‑1 (MQ=60)
TTAGCGGCTTACACACGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑T‑‑‑C‑CC‑‑CCCCCCcccgccacgaggtacgcataaaaccttcacctccacacc > SRR4302540.7356825/1‑55 (MQ=60)
TAGCGGCTTACCCGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑TC‑‑C‑CC‑‑CCCCCC‑‑GTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCC < SRR4302540.8801472/94‑1 (MQ=60)
TAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑T‑‑‑C‑CC‑‑CCCCCC‑‑GTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCG < SRR4302540.5503646/94‑1 (MQ=60)
AGCGGCTTACCCGGGGTCACATTCAAATGCCATTCTGCTACAA‑‑‑TCC‑C‑CC‑‑CCCCCC‑‑GTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCC < SRR4302540.4225483/94‑1 (MQ=60)
AGCGGCTTACACGCGGTCACATTTAAATGCGATTCTGCTACAA‑‑‑TCC‑C‑CC‑‑CCCCCC‑‑GTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCC < SRR4302540.4723547/94‑1 (MQ=60)
AGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑TCC‑C‑CC‑‑CCCCCC‑‑GTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCC < SRR4302540.6385187/94‑1 (MQ=60)
GGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑TC‑‑C‑CC‑‑CCCCCC‑‑GTTCTAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCC < SRR4302540.9445948/94‑1 (MQ=60)
GCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑TC‑‑C‑CC‑‑CCCCCC‑‑GTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCA < SRR4302540.3043639/94‑1 (MQ=60)
CTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑T‑‑‑C‑CC‑‑CCCCCCcccctttcggcgatggtagtacaaacacctgctgaccaccacccgc > SRR4302540.105759/1‑48 (MQ=60)
TTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑TC‑‑C‑CC‑‑CCCCCC‑‑GCTCGAAAGTTGAGCAACACACCTTAGCGCCTAAACCCCGGCCCAC > SRR4302540.4030049/1‑94 (MQ=40)
TTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑T‑‑‑C‑CC‑‑CCCCCCccgcctcaagcttggccaaccacccatcgccgctaaaccccgcccaa > SRR4302540.9889205/1‑47 (MQ=60)
TTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑T‑‑‑C‑CC‑‑CCCCCCccccctgcaccgacgtgtcaatctatcccacctcgcaacacgcgcgc > SRR4302540.7347344/1‑47 (MQ=60)
TTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑T‑‑‑C‑CC‑‑CCCCCCcccccgtgaaagattagggattaacctactggggcaaacacacggaa > SRR4302540.3539059/1‑47 (MQ=60)
TACACGCGGGCACATTCAAATGCGATTCTGCTACAACC‑C‑‑‑C‑CC‑‑CCCCCC‑‑GTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAAC < SRR4302540.5792011/94‑1 (MQ=60)
TCACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑TCC‑C‑CC‑‑CCCCCC‑‑GTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACA < SRR4302540.3408995/94‑1 (MQ=60)
ACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑TCC‑C‑CC‑‑CCCCCC‑‑GTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACA < SRR4302540.5624087/94‑1 (MQ=60)
CCCGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑TCC‑C‑CC‑‑CCCCCC‑‑GTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAA < SRR4302540.3384498/94‑1 (MQ=60)
CCCGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑TC‑‑C‑CC‑‑CCCCCC‑‑GTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAAC < SRR4302540.3308328/94‑1 (MQ=60)
CACGCGGTTACATTCAAATGCGATTCTGCTACAA‑‑‑TC‑‑C‑CC‑‑CCCCCC‑‑GTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAAC < SRR4302540.3308326/94‑1 (MQ=60)
CACGCGGTCCCCTTCAAATGCGATTCTGCTACAA‑‑‑TCC‑C‑CC‑‑CCCCCC‑‑GTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAA < SRR4302540.7903163/94‑1 (MQ=60)
CCGCGGTCACATTCAAATGCGATTCTGCTACAACC‑C‑‑‑C‑CC‑‑CCCCCC‑‑GTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAAC < SRR4302540.3246519/94‑1 (MQ=60)
ACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑TC‑‑C‑CC‑‑CCCCCC‑‑GTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACA < SRR4302540.7517248/94‑1 (MQ=60)
GCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑T‑‑‑C‑CC‑‑CCCCCC‑‑GTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCCGCCAACAACAAGC > SRR4302540.10028625/1‑94 (MQ=60)
CGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑T‑‑‑C‑CC‑‑CCCCCCccggtggagaaatgagagaaaacaatagcgcgctcaaaccccgccacaaaaaaa > SRR4302540.8945796/1‑40 (MQ=60)
GGTCACATTCAAATGCGATTCTGCTACAA‑‑‑TC‑‑C‑CC‑‑CCCCCC‑‑GTTCGAAGATTGAGCAATACACCATTGCGTCTAAACCCCGGCCAACAACcaact > SRR4302540.349298/1‑89 (MQ=60)
GGGCACATTCAAATGCGATTCTGCTACAA‑‑‑TC‑‑C‑CC‑‑CCCCCC‑‑GTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCT < SRR4302540.3509009/94‑1 (MQ=60)
GTCACATTCAAATGCGATTCTGCTACAA‑‑‑TC‑‑C‑CC‑‑CCCCCC‑‑GTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTG < SRR4302540.7104307/94‑1 (MQ=60)
GTCACATTCAAATGCGATTCTGCTACAA‑‑‑T‑‑‑C‑CC‑‑CCCCCC‑‑GTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGT < SRR4302540.9922280/94‑1 (MQ=60)
TCACCTTCAAATGCGATTCTGCTACAA‑‑‑TC‑‑C‑CC‑‑CCCCCC‑‑GTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGT < SRR4302540.494781/94‑1 (MQ=60)
TCACATTCAAATGCGATTCTGCTACAA‑‑‑TCC‑C‑CC‑‑CCCCCC‑‑GTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTG < SRR4302540.1295851/94‑1 (MQ=60)
TCACATTCAAATGCGATTCTGCTACAA‑‑‑T‑‑‑C‑Ccccaccccggtccgagattgagagaaacagcgatgggactaaaccccgcgcaaccacaatctat > SRR4302540.193191/1‑30 (MQ=60)
CATTCAAATGCTATTCTGCTACAA‑‑‑TCC‑C‑CC‑‑CCCCCC‑‑GTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCG < SRR4302540.4131472/94‑1 (MQ=60)
ATTCAAATGCGATTCTGCTACAA‑‑‑TCCCC‑CC‑‑CCCCCC‑‑GTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCG < SRR4302540.4490841/94‑1 (MQ=60)
ATTCAAATGCGATTCTGCTACAA‑‑‑TC‑‑C‑CC‑‑CCCCCC‑‑GTTCGCAGATTGAGCAACACACCTATGCGTCTAAACCCCGGCCCACAACAAACTGTCGAA > SRR4302540.6294793/1‑94 (MQ=60)
ATTCAAATGCGATTCTGCTACAA‑‑‑TC‑‑C‑CC‑‑CCCCCC‑‑GTTCGAAGATTGAGCAATAACCCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAA > SRR4302540.1194533/1‑94 (MQ=60)
ATTCAAATGCGATTCTGCTACAA‑‑‑T‑‑‑C‑CT‑‑CCCCCC‑‑GTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAAT > SRR4302540.289715/1‑94 (MQ=60)
ATTCAAATGCGATTCTGCTACAA‑‑‑T‑‑‑C‑CC‑‑CCCCCCCAGTTCGAAGATTGAGCCATACAACTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGA > SRR4302540.5472245/1‑94 (MQ=60)
TCAAATGCGATTCTGCTACAAAC‑C‑‑‑C‑CC‑‑CCCCCC‑‑GTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAAT < SRR4302540.8501249/94‑1 (MQ=60)
AAATGCTATTCTGCTACAA‑‑‑TCC‑C‑CC‑‑CCCCCC‑‑GTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTC < SRR4302540.6437122/94‑1 (MQ=60)
AAATGCGATTCTGCTACAAAC‑C‑‑‑C‑CC‑‑CCCCCC‑‑GTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTC < SRR4302540.6437123/94‑1 (MQ=60)
CGATTCTGCTACAA‑‑‑TC‑‑C‑CC‑‑CCCCCC‑‑GTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTACC < SRR4302540.3605611/94‑1 (MQ=60)
GATTCTGTTACAA‑‑‑TCC‑C‑CC‑‑CCCCCC‑‑GTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTACC < SRR4302540.6740815/94‑1 (MQ=60)
GATTCTGCTACAAC‑‑C‑‑‑C‑CC‑‑CCCCCC‑‑GTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTACCG < SRR4302540.4216494/94‑1 (MQ=60)
ATTCTGCTACAA‑‑‑TC‑‑C‑CC‑‑CCCCCC‑‑GTTCGAAGATTGAGCAATACCCCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTACCGG < SRR4302540.8856283/94‑1 (MQ=60)
ATTCTGCTACAA‑‑‑TC‑‑C‑CC‑‑CCCCCC‑‑GTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTACCGG < SRR4302540.8856281/94‑1 (MQ=60)
TTCTGCTACAA‑‑‑TCC‑C‑CC‑‑CCCCCC‑‑GTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTACCGG < SRR4302540.8576350/94‑1 (MQ=60)
TTCTGCTACAA‑‑‑TC‑‑C‑CC‑‑CCCCCC‑‑GTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTACCGGC < SRR4302540.1573239/94‑1 (MQ=60)
TCTGCTACAAC‑‑C‑‑‑C‑CC‑‑CCCCCC‑‑GTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTACCGGCC < SRR4302540.3462038/94‑1 (MQ=60)
CTGCTACAA‑‑‑TC‑‑C‑CC‑‑CCCCCC‑‑GTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAACCTGCCCAATTCGTTACCGGCCC > SRR4302540.3346914/1‑94 (MQ=60)
TGCTACAA‑‑‑T‑‑‑C‑CTCCCCCCCC‑‑GTTCGAAGATTGAGCAATACACCTATGCGTCTAACCCCCGGCCAACAACAAGCTGTCGAATTCGTTCCCGGCCC > SRR4302540.2325890/1‑94 (MQ=60)
GCTACAA‑‑‑TC‑‑C‑CC‑‑CCCCCC‑‑GTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAAAAACAAGCTGACGAATTCGTTACCGGCCCCT > SRR4302540.7093113/1‑94 (MQ=60)
CTACAA‑‑‑TCC‑C‑CC‑‑CCCCCC‑‑GTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTACCGGCCCCT < SRR4302540.4014898/94‑1 (MQ=60)
ACAA‑‑‑TC‑‑C‑CC‑‑CCCCCC‑‑GTTCGAAGATTGAGCAAAACACCCATGCGGCTAAACCCCGGCCAACAAAAAGCTGTCGAAATCTTTACCCGCCCCCGCC > SRR4302540.2135803/1‑94 (MQ=46)
T‑‑‑C‑CC‑‑CCCCCC‑‑GTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTACCGGCCCCTGCCTGGTG < SRR4302540.4011852/94‑1 (MQ=60)
C‑CC‑‑CCCCCC‑‑GTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTACCGGCCCCTGCCTGGCGC > SRR4302540.6552152/1‑94 (MQ=60)
CT‑‑CCCCCC‑‑GTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTACCGGCCCCTGCCTGGTGCT < SRR4302540.4751153/94‑1 (MQ=60)
CC‑‑CCCCCC‑‑GTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTACCGGCCCCTGCCTGGTGCT > SRR4302540.9375052/1‑94 (MQ=60)
CC‑‑CCCCCC‑‑GTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTACCGGCCCCTGCCTGGTGCT < SRR4302540.5322877/94‑1 (MQ=60)
CC‑‑CCCCCC‑‑GTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTACCGGCCCCTGCCTGGTGCT < SRR4302540.4978292/94‑1 (MQ=60)
CC‑‑CCCCCC‑‑GTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTACCGGCCCCTGCCTGGTGCT < SRR4302540.9663959/94‑1 (MQ=60)
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CGATTTCGGTCTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑T‑‑‑C‑CT‑‑CCCCCC‑‑GTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTACCGGCCCCTGCCTGGTGCT > NC_000913/3958167‑3958353
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
